Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

I want to generate unnatural protein sequences from a gene family using Progen2 #24

Open
Seaxingzhou opened this issue Feb 15, 2023 · 1 comment

Comments

@Seaxingzhou
Copy link

I want to generate unnatural protein sequences from a gene family using Progen2, but I find that there are no protein family keywords or taxIDs in the Progen2/tokenizer.json file.
Could you provide a complete tokenizer.json file (containing family keywords and taxIDs, etc.) just like the one in the mapping_files/ folder from "https://doi.org/10.5281/zenodo.7296780"?
Also, can the keywords dictionary from mapping_files/ be used in Progen2 models? (I find that "<|bos|>":1 in "Progen2/tokenizer.json" but 1: '2Fe-2S' in "mapping_files/kw_to_name.p2") I look forward to your reply.

@tanoramb
Copy link

Hello,

I want to generate the same kind of proteins by providing keywords.
I am looking forward to your reply to this issue.

Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants