diff --git a/R/model.R b/R/model.R index b1e79914..1f97d738 100644 --- a/R/model.R +++ b/R/model.R @@ -25,7 +25,7 @@ FitMultinom <- function(data, #' @export #' FitMultinomWeekly <- function(variant_df, newdata_df) { - model <- multinom(formula = lineage_collapsed ~ ns(WeekYearCollected, 2), weights = n, data = variant_df, maxit = 1000) + model <- multinom(formula = lineage_collapsed ~ ns(WeekYearCollected, 2), weights = n, data = variant_df, maxit = 1000, trace = FALSE) preds <- predict(model, newdata = newdata_df, type = "prob") x <- sweep(x = preds, MARGIN = 1, STATS = newdata_df$n, FUN = "*") mode(x) <- "integer" diff --git a/R/visualization.R b/R/visualization.R index 2a75ff2e..3dda3ae2 100644 --- a/R/visualization.R +++ b/R/visualization.R @@ -243,7 +243,8 @@ PlotMullerDailyPrevalence <- function(df, ncol = 4) { #' @importFrom patchwork wrap_plots #' @export #' -PlotVariantPrevalenceAnimated <- function(df, title = NULL, caption = "**Source: gisaid.org**
", colors = NULL, date_breaks = "14 days", trans_y = "identity") { +PlotVariantPrevalenceAnimated <- function(df, title = NULL, caption = "**Source: gisaid.org**
", + colors = NULL, date_breaks = "14 days", trans_y = "identity") { if (!is.null(colors)) { color_values <- colors } else { @@ -255,7 +256,8 @@ PlotVariantPrevalenceAnimated <- function(df, title = NULL, caption = "**Source: ) + geom_line() + scale_x_yearweek(date_breaks = date_breaks, date_labels = "%d %b %Y", guide = guide_axis(angle = 90)) + - scale_y_continuous(labels = label_number(accuracy = 1, scale_cut = cut_short_scale())) + # , trans = trans_y) + + scale_y_continuous(labels = label_number(accuracy = NULL, scale_cut = cut_short_scale())) + # , trans = trans_y) + + #scale_y_continuous(labels = label_number(accuracy = 1, scale_cut = cut_short_scale()), trans = trans_y) + geom_label(hjust = 0, aes(label = variant), nudge_x = 10, show.legend = FALSE) + geom_point() + coord_cartesian(ylim = c(0, NA), clip = "off") + @@ -269,7 +271,7 @@ PlotVariantPrevalenceAnimated <- function(df, title = NULL, caption = "**Source: caption = paste0(caption, Sys.Date()) ) + theme(legend.position = "bottom", axis.title.y = element_text(margin = margin(t = 0, r = 20, b = 0, l = 0))) - anim <- the_anim + transition_reveal(Date) + view_follow(fixed_y = c(0, NA), fixed_x = T) + anim <- the_anim + transition_reveal(Date) + view_follow(fixed_y = T, fixed_x = T) anim <- animate(anim, renderer = gifski_renderer(), height = 900, width = 1100, res = 150, nframes = 300, rewind = T, end_pause = 30) return(anim) } diff --git a/docs/404.html b/docs/404.html index 9bd16e7b..23968087 100644 --- a/docs/404.html +++ b/docs/404.html @@ -30,7 +30,7 @@ covmuller - 0.1.2.0003 + 0.1.2.0005 - - - - - -
- - - - -
-
-

Multinomial modeling - Germany

- - - Source: vignettes/MultinomialModeling-Germany.Rmd -
MultinomialModeling-Germany.Rmd
-
- - - - -
-gisaid_metadata <- qs::qread(file = "~/data/epicov/metadata_tsv_2024_01_08.qs")
-gisaid_germany <- gisaid_metadata %>%
-  filter(Country == "Germany") %>%
-  filter(Host == "Human")
-gisaid_germany <- FormatGISAIDMetadata(gisaid_germany) %>%
-  filter(State != "") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-

Plot total sequenced cases -

-
-country_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_germany, rename_country_as_state = TRUE)
-p0 <- BarPlot(country_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "Germany")
-p0
-

-
-
-

Plot stateswise sequenced cases -

-
-state_seq_stats <- TotalSequencesPerMonthStatewise(gisaid_germany)
-state_seq_stats_summary <- state_seq_stats %>%
-  group_by(State) %>%
-  summarise(value = sum(value))
-p1 <- BarPlot(state_seq_stats_summary, xaxis = "State", ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "Germany")
-p1
-

-
-

Get VOCs -

-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-
-gisaid_germany_collapsed <- CollapseLineageToVOCs(
-  variant_df = gisaid_germany,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-gisaid_germany_collapsed_sel <- gisaid_germany_collapsed %>%
-  filter(MonthYearCollected >= "Oct 2022") %>%
-  filter(lineage_collapsed != "Unassigned") %>%
-  filter(State != "Unknown")
-
-vocs_to_keep <- table(gisaid_germany_collapsed_sel$lineage_collapsed)
-vocs_to_keep <- vocs_to_keep[vocs_to_keep > 50]
-
-gisaid_germany_collapsed_sel <- gisaid_germany_collapsed_sel %>% filter(lineage_collapsed %in% names(vocs_to_keep))
-
-gisaid_germany_shared_dateweek <- SummarizeVariantsDatewise(gisaid_germany_collapsed_sel, by_state = TRUE)
-head(gisaid_germany_shared_dateweek)
-
## # A tibble: 6 × 4
-##   State             DateCollectedNumeric lineage_collapsed     n
-##   <chr>                            <dbl> <chr>             <int>
-## 1 Baden-Wurttemberg                19268 BA.5                  1
-## 2 Baden-Wurttemberg                19270 BA.5                  1
-## 3 Baden-Wurttemberg                19276 Others                1
-## 4 Baden-Wurttemberg                19278 BA.5                  2
-## 5 Baden-Wurttemberg                19279 BA.2.75               1
-## 6 Baden-Wurttemberg                19279 BA.4                  1
-
-fit_germany_multi_predsbystate <- FitMultinomStatewiseDaily(gisaid_germany_shared_dateweek)
-
## # weights:  147 (120 variable)
-## initial  value 84514.769594 
-## iter  10 value 58871.333180
-## iter  20 value 55522.530928
-## iter  30 value 50503.510775
-## iter  40 value 47871.511519
-## iter  50 value 47299.292070
-## iter  60 value 46963.614174
-## iter  70 value 46668.970432
-## iter  80 value 46535.784282
-## iter  90 value 46498.287724
-## iter 100 value 46485.928726
-## iter 110 value 46484.524254
-## iter 120 value 46484.171431
-## iter 130 value 46484.026750
-## final  value 46483.999949 
-## converged
-
-head(fit_germany_multi_predsbystate)
-
##   lineage_collapsed DateCollectedNumeric             State        prob
-## 1              BA.2                19268 Baden-Wurttemberg 0.002395273
-## 2           BA.2.75                19268 Baden-Wurttemberg 0.001983825
-## 3              BA.4                19268 Baden-Wurttemberg 0.010924456
-## 4              BA.5                19268 Baden-Wurttemberg 0.561990359
-## 5             BQ.1+                19268 Baden-Wurttemberg 0.098423301
-## 6            Others                19268 Baden-Wurttemberg 0.324110466
-##            SE df     asymp.LCL   asymp.UCL DateCollected
-## 1 0.001243669 NA -4.227349e-05 0.004832819    2022-10-03
-## 2 0.001397073 NA -7.543881e-04 0.004722038    2022-10-03
-## 3 0.006465575 NA -1.747839e-03 0.023596750    2022-10-03
-## 4 0.029268277 NA  5.046256e-01 0.619355127    2022-10-03
-## 5 0.010256478 NA  7.832097e-02 0.118525630    2022-10-03
-## 6 0.023882935 NA  2.773008e-01 0.370920159    2022-10-03
-
-
-
-

Plot Smooth Muller Plots -

-
-muller_germanybystate_mfit <- PlotMullerDailyPrevalence(fit_germany_multi_predsbystate, ncol = 3)
-muller_germanybystate_mfit
-

-
-
-
- - - - -
- - - - - - - diff --git a/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-3-1.png deleted file mode 100644 index be79aa34..00000000 Binary files a/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-3-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-4-1.png deleted file mode 100644 index 47e0eba6..00000000 Binary files a/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-4-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-8-1.png deleted file mode 100644 index 3201e0c2..00000000 Binary files a/docs/articles/MultinomialModeling-Germany_files/figure-html/unnamed-chunk-8-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_Australia.html b/docs/articles/MultinomialModeling_Australia.html deleted file mode 100644 index 3c4da48b..00000000 --- a/docs/articles/MultinomialModeling_Australia.html +++ /dev/null @@ -1,271 +0,0 @@ - - - - - - - - -Multinomial modeling - Australia • covmuller - - - - - - - - - - Skip to contents - - -
- - - - -
-
-

Multinomial modeling - Australia

- - - Source: vignettes/MultinomialModeling_Australia.Rmd -
MultinomialModeling_Australia.Rmd
-
- - - - -
-gisaid_metadata <- qs::qread(file = "~/data/epicov/metadata_tsv_2024_01_08.qs")
-gisaid_australia <- gisaid_metadata %>%
-  filter(Country == "Australia") %>%
-  filter(Host == "Human")
-gisaid_australia <- FormatGISAIDMetadata(gisaid_australia)
-gisaid_australia$State <- gsub(pattern = "?", replacement = "", x = gisaid_australia$State)
-
-gisaid_australia <- gisaid_australia %>%
-  filter(State != "") %>%
-  arrange(State, MonthYearCollected)
-gisaid_australia <- gisaid_australia %>% filter(State != "Unknown")
-
-

Plot total sequenced cases -

-
-country_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_australia, rename_country_as_state = TRUE)
-p0 <- BarPlot(country_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "Australia")
-p0
-

-
-
-

Get VOCs -

-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-
-gisaid_australia_collapsed <- CollapseLineageToVOCs(
-  variant_df = gisaid_australia,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-gisaid_australia_collapsed_sel <- gisaid_australia_collapsed %>%
-  filter(MonthYearCollected >= "Oct 2022") %>%
-  filter(lineage_collapsed != "Unassigned")
-
-vocs_to_keep <- table(gisaid_australia_collapsed_sel$lineage_collapsed)
-vocs_to_keep <- vocs_to_keep[vocs_to_keep > 100]
-
-gisaid_australia_collapsed_sel <- gisaid_australia_collapsed_sel %>% filter(lineage_collapsed %in% names(vocs_to_keep))
-gisaid_australia_shared_dateweek <- SummarizeVariantsDatewise(gisaid_australia_collapsed_sel, by_state = TRUE)
-head(gisaid_australia_shared_dateweek)
-
## # A tibble: 6 × 4
-##   State                        DateCollectedNumeric lineage_collapsed     n
-##   <chr>                                       <dbl> <chr>             <int>
-## 1 Australian Capital Territory                19266 BA.4                  1
-## 2 Australian Capital Territory                19266 BA.5                  1
-## 3 Australian Capital Territory                19268 BA.5                  3
-## 4 Australian Capital Territory                19269 BA.5                  5
-## 5 Australian Capital Territory                19269 Others                2
-## 6 Australian Capital Territory                19270 BA.5                  6
-
-fit_australia_multi_predsbystate <- FitMultinomStatewiseDaily(gisaid_australia_shared_dateweek)
-
## # weights:  77 (60 variable)
-## initial  value 81868.331791 
-## iter  10 value 44070.203776
-## iter  20 value 41147.140310
-## iter  30 value 37628.202667
-## iter  40 value 35644.341491
-## iter  50 value 34806.030962
-## iter  60 value 34524.606747
-## iter  70 value 34495.422733
-## iter  80 value 34488.423228
-## iter  90 value 34487.026907
-## iter 100 value 34486.832770
-## iter 110 value 34486.808519
-## final  value 34486.800097 
-## converged
-
-head(fit_australia_multi_predsbystate)
-
##   lineage_collapsed DateCollectedNumeric                        State
-## 1              BA.2                19266 Australian Capital Territory
-## 2           BA.2.75                19266 Australian Capital Territory
-## 3              BA.4                19266 Australian Capital Territory
-## 4              BA.5                19266 Australian Capital Territory
-## 5             BQ.1+                19266 Australian Capital Territory
-## 6            Others                19266 Australian Capital Territory
-##         prob          SE df   asymp.LCL  asymp.UCL DateCollected
-## 1 0.01287056 0.004330736 NA 0.004382473 0.02135865    2022-10-01
-## 2 0.02820800 0.007365799 NA 0.013771296 0.04264470    2022-10-01
-## 3 0.06585284 0.013198964 NA 0.039983347 0.09172233    2022-10-01
-## 4 0.67639409 0.020085207 NA 0.637027807 0.71576037    2022-10-01
-## 5 0.03872073 0.004079806 NA 0.030724455 0.04671700    2022-10-01
-## 6 0.17760819 0.012103338 NA 0.153886085 0.20133030    2022-10-01
-
-
-

Plot Smooth Muller Plots -

-
-muller_australiabystate_mfit <- PlotMullerDailyPrevalence(fit_australia_multi_predsbystate, ncol = 3)
-muller_australiabystate_mfit
-

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-
- - - - -
- - - - - - - diff --git a/docs/articles/MultinomialModeling_Australia_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/MultinomialModeling_Australia_files/figure-html/unnamed-chunk-3-1.png deleted file mode 100644 index c80f8e5b..00000000 Binary files a/docs/articles/MultinomialModeling_Australia_files/figure-html/unnamed-chunk-3-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_Australia_files/figure-html/unnamed-chunk-7-1.png b/docs/articles/MultinomialModeling_Australia_files/figure-html/unnamed-chunk-7-1.png deleted file mode 100644 index 5a138f09..00000000 Binary files a/docs/articles/MultinomialModeling_Australia_files/figure-html/unnamed-chunk-7-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_Canada.html b/docs/articles/MultinomialModeling_Canada.html deleted file mode 100644 index 1ea69353..00000000 --- a/docs/articles/MultinomialModeling_Canada.html +++ /dev/null @@ -1,268 +0,0 @@ - - - - - - - - -Multinomial modeling - Canada • covmuller - - - - - - - - - - Skip to contents - - -
- - - - -
-
-

Multinomial modeling - Canada

- - - Source: vignettes/MultinomialModeling_Canada.Rmd -
MultinomialModeling_Canada.Rmd
-
- - - - -
-gisaid_metadata <- qs::qread(file = "~/data/epicov/metadata_tsv_2024_01_08.qs")
-gisaid_canada <- gisaid_metadata %>%
-  filter(Country == "Canada") %>%
-  filter(Host == "Human")
-gisaid_canada <- FormatGISAIDMetadata(gisaid_canada)
-gisaid_canada <- gisaid_canada %>%
-  arrange(State, MonthYearCollected)
-gisaid_canada$State <- CleanCanadaStates(gisaid_canada$State)
-gisaid_canada <- gisaid_canada %>% filter(State != "Unknown")
-
-

Plot total sequenced cases -

-
-country_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_canada, rename_country_as_state = TRUE)
-p0 <- BarPlot(country_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "Canada")
-p0
-

-
-
-

Get VOCs -

-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-
-gisaid_canada_collapsed <- CollapseLineageToVOCs(
-  variant_df = gisaid_canada,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-gisaid_canada_collapsed_sel <- gisaid_canada_collapsed %>% filter(MonthYearCollected >= "Oct 2022")
-
-vocs_to_keep <- table(gisaid_canada_collapsed_sel$lineage_collapsed)
-vocs_to_keep <- vocs_to_keep[vocs_to_keep > 100]
-
-gisaid_canada_collapsed_sel <- gisaid_canada_collapsed_sel %>% filter(lineage_collapsed %in% names(vocs_to_keep))
-gisaid_canada_shared_dateweek <- SummarizeVariantsDatewise(gisaid_canada_collapsed_sel, by_state = TRUE)
-head(gisaid_canada_shared_dateweek)
-
## # A tibble: 6 × 4
-##   State   DateCollectedNumeric lineage_collapsed     n
-##   <chr>                  <dbl> <chr>             <int>
-## 1 Alberta                19270 BA.5                  1
-## 2 Alberta                19287 BA.5                  1
-## 3 Alberta                19288 BA.5                  1
-## 4 Alberta                19288 BQ.1+                 1
-## 5 Alberta                19289 BA.5                  4
-## 6 Alberta                19289 BQ.1+                 1
-
-fit_canada_multi_predsbystate <- FitMultinomStatewiseDaily(gisaid_canada_shared_dateweek)
-
## # weights:  78 (60 variable)
-## initial  value 187840.895716 
-## iter  10 value 110689.126358
-## iter  20 value 108427.020931
-## iter  30 value 97154.791951
-## iter  40 value 92547.846240
-## iter  50 value 90348.395369
-## iter  60 value 87691.764293
-## iter  70 value 86673.506577
-## iter  80 value 86654.378224
-## iter  90 value 86644.678472
-## iter 100 value 86643.817674
-## iter 110 value 86643.284694
-## iter 120 value 86642.851219
-## final  value 86642.812520 
-## converged
-
-head(fit_canada_multi_predsbystate)
-
##   lineage_collapsed DateCollectedNumeric   State         prob           SE df
-## 1           BA.2.75                19267 Alberta 0.0831165146 2.476606e-02 NA
-## 2              BA.4                19267 Alberta 0.0751094919 9.840250e-03 NA
-## 3              BA.5                19267 Alberta 0.6992750081 2.212831e-02 NA
-## 4             BQ.1+                19267 Alberta 0.0812395411 4.443272e-03 NA
-## 5            Others                19267 Alberta 0.0608317700 3.659269e-03 NA
-## 6               XBB                19267 Alberta 0.0004276743 3.649025e-05 NA
-##      asymp.LCL    asymp.UCL DateCollected
-## 1 0.0345759243 0.1316571050    2022-10-02
-## 2 0.0558229555 0.0943960282    2022-10-02
-## 3 0.6559043089 0.7426457072    2022-10-02
-## 4 0.0725308871 0.0899481950    2022-10-02
-## 5 0.0536597344 0.0680038056    2022-10-02
-## 6 0.0003561548 0.0004991939    2022-10-02
-
-
-

Plot Smooth Muller Plots -

-
-muller_canadabystate_mfit <- PlotMullerDailyPrevalence(fit_canada_multi_predsbystate, ncol = 3)
-muller_canadabystate_mfit
-

-
-
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- - - - -
-
-

Multinomial modeling - India

- - - Source: vignettes/MultinomialModeling_India.Rmd -
MultinomialModeling_India.Rmd
-
- - - -
suppressPackageStartupMessages({
-  library(covmuller)
-  library(tidyverse)
-})
-theme_set(CovmullerTheme())
-
gisaid_metadata <- qs::qread(file = "~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-

Plot total sequenced cases

-
country_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india, rename_country_as_state = TRUE)
-p0 <- BarPlot(country_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "India")
-p0
-

-
-
-

Plot stateswise sequenced cases

-
state_seq_stats <- TotalSequencesPerMonthStatewise(gisaid_india)
-state_seq_stats_summary <- state_seq_stats %>%
-  group_by(State) %>%
-  summarise(value = sum(value))
-state_seq_stats_summary$State[state_seq_stats_summary$State == "Dadra and Nagar Haveli and Daman and Diu"] <- "Dadra/N Haveli/Daman/Diu"
-p1 <- BarPlot(state_seq_stats_summary, xaxis = "State", ylabel = "Total sequences deposited", color = "slateblue1", label_si = TRUE, xangle = 90, title = "India")
-p1
-

-
-

Get VOCs

-
vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-
gisaid_india_collapsed <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-gisaid_india_collapsed_sel <- gisaid_india_collapsed %>%
-  filter(MonthYearCollected >= "Oct 2022") %>%
-  filter(lineage_collapsed != "Unassigned")
-vocs_to_keep <- table(gisaid_india_collapsed_sel$lineage_collapsed)
-vocs_to_keep <- vocs_to_keep[vocs_to_keep > 100]
-
-gisaid_india_collapsed_sel <- gisaid_india_collapsed_sel %>% filter(lineage_collapsed %in% names(vocs_to_keep))
-
-gisaid_india_shared_dateweek <- SummarizeVariantsDatewise(gisaid_india_collapsed_sel, by_state = TRUE)
-head(gisaid_india_shared_dateweek)
-
## # A tibble: 6 × 4
-##   State             DateCollectedNumeric lineage_collapsed     n
-##   <chr>                            <dbl> <chr>             <int>
-## 1 Andhra Pradesh                   19448 XBB                   1
-## 2 Andhra Pradesh                   19506 XBB                   1
-## 3 Arunachal Pradesh                19361 XBB                   1
-## 4 Arunachal Pradesh                19459 XBB                   1
-## 5 Arunachal Pradesh                19556 XBB                   1
-## 6 Arunachal Pradesh                19611 Others                1
-
fit_india_multi_predsbystate <- FitMultinomStatewiseDaily(gisaid_india_shared_dateweek)
-
## # weights:  204 (165 variable)
-## initial  value 32936.122563 
-## iter  10 value 11412.728941
-## iter  20 value 10497.898156
-## iter  30 value 10060.762985
-## iter  40 value 9915.848503
-## iter  50 value 9795.429255
-## iter  60 value 9722.564462
-## iter  70 value 9691.424610
-## iter  80 value 9677.049745
-## iter  90 value 9675.962483
-## iter 100 value 9675.837818
-## iter 110 value 9675.761679
-## final  value 9675.760375 
-## converged
-
head(fit_india_multi_predsbystate)
-
##   lineage_collapsed DateCollectedNumeric          State         prob
-## 1              BA.2                19266 Andhra Pradesh 7.813500e-05
-## 2           BA.2.75                19266 Andhra Pradesh 4.233569e-05
-## 3            BA.2.X                19266 Andhra Pradesh 4.508509e-08
-## 4             BQ.1+                19266 Andhra Pradesh 1.724266e-08
-## 5            Others                19266 Andhra Pradesh 1.775514e-03
-## 6               XBB                19266 Andhra Pradesh 9.981040e-01
-##             SE df     asymp.LCL    asymp.UCL DateCollected
-## 1 7.635012e-05 NA -7.150849e-05 2.277785e-04    2022-10-01
-## 2 1.180819e-04 NA -1.891006e-04 2.737720e-04    2022-10-01
-## 3 2.883637e-08 NA -1.143316e-08 1.016033e-07    2022-10-01
-## 4 1.160411e-08 NA -5.500971e-09 3.998630e-08    2022-10-01
-## 5 1.676378e-03 NA -1.510127e-03 5.061154e-03    2022-10-01
-## 6 1.737326e-03 NA  9.946989e-01 1.001509e+00    2022-10-01
-
-
-
-

Plot Smooth Muller Plots

-
muller_indiabystate_mfit <- PlotMullerDailyPrevalence(fit_india_multi_predsbystate)
-muller_indiabystate_mfit
-

-
-
- - - -
- - - - - - diff --git a/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-3-1.png deleted file mode 100644 index 20826a93..00000000 Binary files a/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-3-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-4-1.png deleted file mode 100644 index 431b4440..00000000 Binary files a/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-4-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-8-1.png deleted file mode 100644 index 2bd215aa..00000000 Binary files a/docs/articles/MultinomialModeling_India_files/figure-html/unnamed-chunk-8-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_SouthAfrica.html b/docs/articles/MultinomialModeling_SouthAfrica.html deleted file mode 100644 index fb1b02f4..00000000 --- a/docs/articles/MultinomialModeling_SouthAfrica.html +++ /dev/null @@ -1,275 +0,0 @@ - - - - - - - - -Multinomial modeling - South Africa • covmuller - - - - - - - - - - Skip to contents - - -
- - - - -
-
-

Multinomial modeling - South Africa

- - - Source: vignettes/MultinomialModeling_SouthAfrica.Rmd -
MultinomialModeling_SouthAfrica.Rmd
-
- - - - -
-gisaid_metadata <- qs::qread(file = "~/data/epicov/metadata_tsv_2024_01_08.qs")
-gisaid_southafrica <- gisaid_metadata %>%
-  filter(Country == "South Africa") %>%
-  filter(Host == "Human")
-gisaid_southafrica <- FormatGISAIDMetadata(gisaid_southafrica)
-gisaid_southafrica <- gisaid_southafrica %>%
-  arrange(State, MonthYearCollected)
-gisaid_southafrica$State <- CleanSouthAfricanStates(gisaid_southafrica$State)
-
-

Plot total sequenced cases -

-
-country_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_southafrica, rename_country_as_state = TRUE)
-p0 <- BarPlot(country_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "South Africa")
-p0
-

-
-
-

Plot stateswise sequenced cases -

-
-state_seq_stats <- TotalSequencesPerMonthStatewise(gisaid_southafrica)
-state_seq_stats_summary <- state_seq_stats %>%
-  group_by(State) %>%
-  summarise(value = sum(value))
-p1 <- BarPlot(state_seq_stats_summary, xaxis = "State", ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "South Africa")
-p1
-

-
-

Get VOCs -

-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-
-gisaid_southafrica_collapsed <- CollapseLineageToVOCs(
-  variant_df = gisaid_southafrica,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-gisaid_southafrica_collapsed_sel <- gisaid_southafrica_collapsed %>%
-  filter(MonthYearCollected >= "Oct 2022") %>%
-  filter(lineage_collapsed != "Unassigned") %>%
-  filter(State != "Unknown")
-
-vocs_to_keep <- table(gisaid_southafrica_collapsed_sel$lineage_collapsed)
-vocs_to_keep <- vocs_to_keep[vocs_to_keep > 50]
-
-gisaid_southafrica_collapsed_sel <- gisaid_southafrica_collapsed_sel %>% filter(lineage_collapsed %in% names(vocs_to_keep))
-
-gisaid_southafrica_shared_dateweek <- SummarizeVariantsDatewise(gisaid_southafrica_collapsed_sel, by_state = TRUE)
-head(gisaid_southafrica_shared_dateweek)
-
## # A tibble: 6 × 4
-##   State        DateCollectedNumeric lineage_collapsed     n
-##   <chr>                       <dbl> <chr>             <int>
-## 1 Eastern Cape                19340 BQ.1+                 1
-## 2 Eastern Cape                19366 BA.5                  1
-## 3 Eastern Cape                19366 BQ.1+                 1
-## 4 Eastern Cape                19367 BA.5                  2
-## 5 Eastern Cape                19367 BQ.1+                 1
-## 6 Eastern Cape                19367 Others                1
-
-fit_southafrica_multi_predsbystate <- FitMultinomStatewiseDaily(gisaid_southafrica_shared_dateweek)
-
## # weights:  48 (33 variable)
-## initial  value 6332.592642 
-## iter  10 value 4506.511198
-## iter  20 value 3774.308144
-## iter  30 value 3687.379840
-## iter  40 value 3674.078156
-## final  value 3673.923064 
-## converged
-
-head(fit_southafrica_multi_predsbystate)
-
##   lineage_collapsed DateCollectedNumeric        State         prob           SE
-## 1              BA.5                19269 Eastern Cape 0.7749025935 6.623080e-02
-## 2             BQ.1+                19269 Eastern Cape 0.0033670249 1.433762e-03
-## 3            Others                19269 Eastern Cape 0.2215801968 6.561908e-02
-## 4               XBB                19269 Eastern Cape 0.0001501848 7.306782e-05
-## 5              BA.5                19276 Eastern Cape 0.7560557338 6.532893e-02
-## 6             BQ.1+                19276 Eastern Cape 0.0054931242 2.150660e-03
-##   df    asymp.LCL    asymp.UCL DateCollected
-## 1 NA 6.450926e-01 0.9047125748    2022-10-04
-## 2 NA 5.569034e-04 0.0061771465    2022-10-04
-## 3 NA 9.296916e-02 0.3501912359    2022-10-04
-## 4 NA 6.974489e-06 0.0002933951    2022-10-04
-## 5 NA 6.280134e-01 0.8840980854    2022-10-11
-## 6 NA 1.277908e-03 0.0097083406    2022-10-11
-
-
-
-

Plot Smooth Muller Plots -

-
-muller_southafricabystate_mfit <- PlotMullerDailyPrevalence(fit_southafrica_multi_predsbystate, ncol = 3)
-muller_southafricabystate_mfit
-

-
-
-
- - - - -
- - - - - - - diff --git a/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-3-1.png b/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-3-1.png deleted file mode 100644 index f7cc4a7b..00000000 Binary files a/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-3-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-4-1.png b/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-4-1.png deleted file mode 100644 index 3b36f7da..00000000 Binary files a/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-4-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-8-1.png deleted file mode 100644 index 2eb93b00..00000000 Binary files a/docs/articles/MultinomialModeling_SouthAfrica_files/figure-html/unnamed-chunk-8-1.png and /dev/null differ diff --git a/docs/articles/MultinomialModeling_UK.html b/docs/articles/MultinomialModeling_UK.html deleted file mode 100644 index 39054462..00000000 --- a/docs/articles/MultinomialModeling_UK.html +++ /dev/null @@ -1,267 +0,0 @@ - - - - - - - - -Multinomial modeling - United Kingdom • covmuller - - - - - - - - - - Skip to contents - - -
- - - - -
-
-

Multinomial modeling - United Kingdom

- - - Source: vignettes/MultinomialModeling_UK.Rmd -
MultinomialModeling_UK.Rmd
-
- - - - -
-gisaid_metadata <- qs::qread(file = "~/data/epicov/metadata_tsv_2024_01_08.qs")
-gisaid_uk <- gisaid_metadata %>%
-  filter(Country == "United Kingdom") %>%
-  filter(Host == "Human")
-gisaid_uk <- FormatGISAIDMetadata(gisaid_uk)
-gisaid_uk <- gisaid_uk %>%
-  filter(State != "") %>%
-  arrange(State, MonthYearCollected)
-
-

Plot total sequenced cases -

-
-country_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_uk, rename_country_as_state = TRUE)
-p0 <- BarPlot(country_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, xangle = 90, title = "United Kingdom")
-p0
-

-
-
-

Get VOCs -

-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-
-gisaid_uk_collapsed <- CollapseLineageToVOCs(
-  variant_df = gisaid_uk,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-gisaid_uk_collapsed_sel <- gisaid_uk_collapsed %>%
-  filter(MonthYearCollected >= "Oct 2022") %>%
-  filter(lineage_collapsed != "Unassigned")
-
-vocs_to_keep <- table(gisaid_uk_collapsed_sel$lineage_collapsed)
-vocs_to_keep <- vocs_to_keep[vocs_to_keep > 100]
-
-gisaid_uk_collapsed_sel <- gisaid_uk_collapsed_sel %>% filter(lineage_collapsed %in% names(vocs_to_keep))
-gisaid_uk_shared_dateweek <- SummarizeVariantsDatewise(gisaid_uk_collapsed_sel, by_state = TRUE)
-head(gisaid_uk_shared_dateweek)
-
## # A tibble: 6 × 4
-##   State   DateCollectedNumeric lineage_collapsed     n
-##   <chr>                  <dbl> <chr>             <int>
-## 1 England                19266 BA.2.75               1
-## 2 England                19266 BA.5                  1
-## 3 England                19266 Others                2
-## 4 England                19267 BA.4                  2
-## 5 England                19267 BA.5                  3
-## 6 England                19267 Others                3
-
-fit_uk_multi_predsbystate <- FitMultinomStatewiseDaily(gisaid_uk_shared_dateweek)
-
## # weights:  42 (30 variable)
-## initial  value 212260.785522 
-## iter  10 value 132682.285811
-## iter  20 value 124684.559590
-## iter  30 value 114429.990736
-## iter  40 value 111295.757402
-## iter  50 value 110969.952275
-## iter  60 value 110927.717094
-## iter  70 value 110926.524749
-## iter  80 value 110926.239561
-## iter  90 value 110924.251868
-## iter 100 value 110922.200728
-## final  value 110922.032284 
-## converged
-
-head(fit_uk_multi_predsbystate)
-
##   lineage_collapsed DateCollectedNumeric   State         prob           SE df
-## 1           BA.2.75                19266 England 0.0327501455 8.594579e-03 NA
-## 2              BA.4                19266 England 0.0497328609 9.222749e-03 NA
-## 3              BA.5                19266 England 0.6155197047 1.628229e-02 NA
-## 4             BQ.1+                19266 England 0.1886427943 9.305751e-03 NA
-## 5            Others                19266 England 0.1124983741 5.583855e-03 NA
-## 6               XBB                19266 England 0.0008561205 5.794389e-05 NA
-##      asymp.LCL    asymp.UCL DateCollected
-## 1 0.0159050796 0.0495952114    2022-10-01
-## 2 0.0316566054 0.0678091164    2022-10-01
-## 3 0.5836070074 0.6474324020    2022-10-01
-## 4 0.1704038582 0.2068817303    2022-10-01
-## 5 0.1015542204 0.1234425279    2022-10-01
-## 6 0.0007425525 0.0009696884    2022-10-01
-
-
-

Plot Smooth Muller Plots -

-
-muller_ukbystate_mfit <- PlotMullerDailyPrevalence(fit_uk_multi_predsbystate, ncol = 3)
-muller_ukbystate_mfit
-

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projected weekly cases - Bengaluru (India) • covmuller - - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Bengaluru (India)

- - - Source: vignettes/VariantAnimation-Bengaluru.Rmd -
VariantAnimation-Bengaluru.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Bengaluru -

-
-Bengaluru_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District %in% c("Bengaluru Urban", "Bengaluru Rural"))
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(Bengaluru_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [3]
-##   MonthYear State     District        value
-##   <yearmon> <chr>     <chr>           <dbl>
-## 1 Apr 2020  Karnataka Bengaluru Rural     6
-## 2 Apr 2020  Karnataka Bengaluru Urban   141
-## 3 May 2020  Karnataka Bengaluru Rural     9
-## 4 May 2020  Karnataka Bengaluru Urban   218
-## 5 Jun 2020  Karnataka Bengaluru Rural   114
-## 6 Jun 2020  Karnataka Bengaluru Urban  4196
-
-

Plot monthly cases for Bengaluru -

-
-p1 <- BarPlot(Bengaluru_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Bengaluru (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Bengaluru -

-
-Bengaluru_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "Bengaluru"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(Bengaluru_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Bengaluru (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Bengaluru sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-Bengaluru_monthly_cases_tmp <- Bengaluru_monthly_cases %>% select(MonthYear, value)
-Bengaluru_monthly_cases_tmp$State <- "India"
-Bengaluru_monthly_cases_tmp$type <- "Confirmed"
-
-Bengaluru_monthly_cases_tmp <- Bengaluru_monthly_cases_tmp %>%
-  group_by(MonthYear, State, type) %>%
-  summarise(value = sum(value))
-
-Bengaluru_monthly_cases_tmp <- Bengaluru_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = Bengaluru_seq_stats,
-  confirmed_long = Bengaluru_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Bengaluru (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "Bengaluru") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Bengaluru Urban", "Bengaluru Rural")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  44 (30 variable)
-## initial  value 27280.854519 
-## iter  10 value 12654.212777
-## iter  20 value 6673.400386
-## iter  30 value 5900.795573
-## iter  40 value 5579.611334
-## iter  50 value 5437.754669
-## iter  60 value 5289.623501
-## iter  70 value 5089.205002
-## iter  80 value 4828.414224
-## iter  90 value 4722.853944
-## iter 100 value 4716.025496
-## iter 110 value 4708.762722
-## iter 120 value 4703.187810
-## iter 130 value 4702.317236
-## iter 140 value 4700.036796
-## iter 150 value 4698.415786
-## iter 160 value 4691.593834
-## iter 170 value 4666.532005
-## iter 180 value 4647.199789
-## iter 190 value 4645.953016
-## iter 200 value 4644.413888
-## iter 210 value 4640.909007
-## iter 220 value 4639.913660
-## iter 230 value 4639.756334
-## iter 240 value 4639.163422
-## iter 250 value 4637.084115
-## iter 260 value 4636.784964
-## iter 270 value 4635.808570
-## iter 280 value 4634.779618
-## iter 290 value 4634.438043
-## iter 300 value 4634.244641
-## final  value 4632.480217 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Bengaluru (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Bengaluru_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Bengaluru Urban", "Bengaluru Rural")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Bengaluru") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 13260.587551 
-## iter  10 value 4244.312127
-## iter  20 value 3571.482803
-## iter  30 value 3494.250103
-## iter  40 value 3457.604725
-## iter  50 value 3444.861697
-## iter  60 value 3440.569061
-## iter  70 value 3439.411840
-## iter  80 value 3438.525153
-## iter  90 value 3438.196092
-## iter 100 value 3437.826340
-## iter 110 value 3437.265419
-## iter 120 value 3437.234425
-## iter 130 value 3437.191321
-## iter 140 value 3437.012394
-## iter 150 value 3436.953845
-## iter 160 value 3436.881184
-## iter 170 value 3436.695579
-## iter 180 value 3436.659370
-## iter 190 value 3436.612976
-## iter 200 value 3436.592489
-## iter 210 value 3436.564673
-## iter 220 value 3436.539005
-## final  value 3436.537103 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Bengaluru (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Bengaluru_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(District %in% c("Bengaluru Urban", "Bengaluru Rural")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Bengaluru") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 13260.587551 
-## iter  10 value 4244.312127
-## iter  20 value 3571.482803
-## iter  30 value 3494.250103
-## iter  40 value 3457.604725
-## iter  50 value 3444.861697
-## iter  60 value 3440.569061
-## iter  70 value 3439.411840
-## iter  80 value 3438.525153
-## iter  90 value 3438.196092
-## iter 100 value 3437.826340
-## iter 110 value 3437.265419
-## iter 120 value 3437.234425
-## iter 130 value 3437.191321
-## iter 140 value 3437.012394
-## iter 150 value 3436.953845
-## iter 160 value 3436.881184
-## iter 170 value 3436.695579
-## iter 180 value 3436.659370
-## iter 190 value 3436.612976
-## iter 200 value 3436.592489
-## iter 210 value 3436.564673
-## iter 220 value 3436.539005
-## final  value 3436.537103 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Bengaluru (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Bengaluru_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - - -
- - - - - - - diff --git a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Bengaluru_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Bengaluru_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Bengaluru_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Bengaluru_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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.paginate_button:active{background:#3a3a3a} diff --git a/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/js/jquery.dataTables.min.js b/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/js/jquery.dataTables.min.js deleted file mode 100644 index f786b0da..00000000 --- a/docs/articles/VariantAnimation-Bengaluru_files/dt-core-1.13.6/js/jquery.dataTables.min.js +++ /dev/null @@ -1,4 +0,0 @@ -/*! DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Chennai (India)

- - - Source: vignettes/VariantAnimation-Chennai.Rmd -
VariantAnimation-Chennai.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- "Unknown"
-
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

State of origin of BA/4/BA.5 sequences? -

-
-gisaid_india %>%
-  filter(pangolin_lineage %in% c("BA.4", "BA.5")) %>%
-  pull(State) %>%
-  table() %>%
-  as.data.frame() %>%
-  arrange(desc(Freq)) %>%
-  DT::datatable()
-
- -
-
-

City of origin of BA.4/BA.5 sequences? -

-
-gisaid_india %>%
-  filter(pangolin_lineage %in% c("BA.4", "BA.5")) %>%
-  pull(custom_city) %>%
-  table() %>%
-  as.data.frame() %>%
-  arrange(desc(Freq)) %>%
-  DT::datatable()
-
- -
-
-

Get monthly cases for Chennai -

-
-chennai_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District == "Chennai")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(chennai_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [6]
-##   MonthYear State      District value
-##   <yearmon> <chr>      <chr>    <dbl>
-## 1 Apr 2020  Tamil Nadu Chennai    910
-## 2 May 2020  Tamil Nadu Chennai  13889
-## 3 Jun 2020  Tamil Nadu Chennai  43528
-## 4 Jul 2020  Tamil Nadu Chennai  41467
-## 5 Aug 2020  Tamil Nadu Chennai  35803
-## 6 Sep 2020  Tamil Nadu Chennai  31779
-
-

Plot monthly cases for Chennai -

-
-p1 <- BarPlot(chennai_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Chennai (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Chennai -

-
-chennai_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "Chennai"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(chennai_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Chennai (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Chennai sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-chennai_monthly_cases_tmp <- chennai_monthly_cases %>% select(MonthYear, value)
-chennai_monthly_cases_tmp$State <- "India"
-chennai_monthly_cases_tmp$type <- "Confirmed"
-
-chennai_monthly_cases_tmp <- chennai_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = chennai_seq_stats,
-  confirmed_long = chennai_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Chennai (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(custom_city == "Chennai"))
-state_month_counts$State <- "Chennai"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "Chennai") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Chennai")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  48 (33 variable)
-## initial  value 15605.213761 
-## iter  10 value 9346.725587
-## iter  20 value 6735.265161
-## iter  30 value 6252.767740
-## iter  40 value 5962.591363
-## iter  50 value 5839.616667
-## iter  60 value 5688.700478
-## iter  70 value 5646.847872
-## iter  80 value 5644.264029
-## iter  90 value 5635.112092
-## iter 100 value 5632.626406
-## iter 110 value 5611.731368
-## iter 120 value 5608.160319
-## iter 130 value 5602.430986
-## iter 140 value 5602.085418
-## iter 150 value 5601.992062
-## iter 160 value 5601.547330
-## iter 170 value 5599.095961
-## iter 180 value 5597.310934
-## iter 190 value 5596.025887
-## iter 200 value 5586.144855
-## iter 210 value 5582.730045
-## iter 220 value 5582.206277
-## iter 230 value 5581.641031
-## iter 240 value 5580.844556
-## iter 250 value 5578.550303
-## iter 260 value 5577.858001
-## iter 270 value 5577.656828
-## iter 280 value 5577.632627
-## iter 290 value 5577.545751
-## iter 300 value 5577.491586
-## iter 310 value 5577.422956
-## iter 320 value 5576.188103
-## iter 330 value 5571.337207
-## final  value 5569.995071 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Chennai (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Chennai_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Chennai")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Chennai") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 9646.732682 
-## iter  10 value 4436.449277
-## iter  20 value 3750.586782
-## iter  30 value 3524.118672
-## iter  40 value 3477.534654
-## iter  50 value 3461.347353
-## iter  60 value 3457.749224
-## iter  70 value 3455.803570
-## iter  80 value 3455.186713
-## iter  90 value 3453.396263
-## iter 100 value 3451.684841
-## iter 110 value 3448.796346
-## iter 120 value 3448.681536
-## iter 130 value 3448.621780
-## iter 140 value 3448.598491
-## iter 150 value 3448.517228
-## iter 160 value 3448.295038
-## iter 170 value 3448.240697
-## iter 180 value 3448.196202
-## iter 190 value 3448.104299
-## iter 200 value 3448.042618
-## iter 210 value 3448.020950
-## iter 220 value 3447.924799
-## iter 230 value 3447.797141
-## iter 240 value 3447.738687
-## iter 250 value 3447.697683
-## iter 260 value 3447.677071
-## iter 270 value 3447.658190
-## iter 280 value 3447.631436
-## iter 290 value 3447.563336
-## iter 300 value 3447.544602
-## final  value 3447.504293 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Chennai (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Chennai_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(District %in% c("Chennai")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Chennai") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 9646.732682 
-## iter  10 value 4436.449277
-## iter  20 value 3750.586782
-## iter  30 value 3524.118672
-## iter  40 value 3477.534654
-## iter  50 value 3461.347353
-## iter  60 value 3457.749224
-## iter  70 value 3455.803570
-## iter  80 value 3455.186713
-## iter  90 value 3453.396263
-## iter 100 value 3451.684841
-## iter 110 value 3448.796346
-## iter 120 value 3448.681536
-## iter 130 value 3448.621780
-## iter 140 value 3448.598491
-## iter 150 value 3448.517228
-## iter 160 value 3448.295038
-## iter 170 value 3448.240697
-## iter 180 value 3448.196202
-## iter 190 value 3448.104299
-## iter 200 value 3448.042618
-## iter 210 value 3448.020950
-## iter 220 value 3447.924799
-## iter 230 value 3447.797141
-## iter 240 value 3447.738687
-## iter 250 value 3447.697683
-## iter 260 value 3447.677071
-## iter 270 value 3447.658190
-## iter 280 value 3447.631436
-## iter 290 value 3447.563336
-## iter 300 value 3447.544602
-## final  value 3447.504293 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Chennai (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Chennai_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Chennai_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Chennai_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Chennai_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Chennai_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Chennai_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Chennai_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Chennai_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Chennai_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Chennai_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - New Delhi (India)

- - - Source: vignettes/VariantAnimation-Delhi.Rmd -
VariantAnimation-Delhi.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Delhi -

-
-NewDelhi_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District == "Delhi")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(NewDelhi_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [6]
-##   MonthYear State District  value
-##   <yearmon> <chr> <chr>     <dbl>
-## 1 Apr 2020  Delhi Delhi      3515
-## 2 May 2020  Delhi Delhi     16329
-## 3 Jun 2020  Delhi Delhi     67516
-## 4 Jul 2020  Delhi Delhi     48238
-## 5 Aug 2020  Delhi Delhi     39150
-## 6 Sep 2020  Delhi Delhi    104967
-
-

Plot monthly cases for New Delhi -

-
-p1 <- BarPlot(NewDelhi_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - New Delhi (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for New Delhi -

-
-NewDelhi_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "New Delhi"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(NewDelhi_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from New Delhi (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has New Delhi sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-NewDelhi_monthly_cases_cases_tmp <- NewDelhi_monthly_cases %>% select(MonthYear, value)
-NewDelhi_monthly_cases_cases_tmp$State <- "India"
-NewDelhi_monthly_cases_cases_tmp$type <- "Confirmed"
-
-NewDelhi_monthly_cases_cases_tmp <- NewDelhi_monthly_cases_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = NewDelhi_seq_stats,
-  confirmed_long = NewDelhi_monthly_cases_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from New Delhi (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(custom_city == "New Delhi"))
-state_month_counts$State <- "New Delhi"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "New Delhi") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Delhi")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  32 (21 variable)
-## initial  value 4302.364550 
-## iter  10 value 1572.411772
-## iter  20 value 1123.483648
-## iter  30 value 1016.583002
-## iter  40 value 997.937340
-## iter  50 value 984.531287
-## iter  60 value 942.126087
-## iter  70 value 936.966776
-## iter  80 value 921.123735
-## iter  90 value 918.589362
-## iter 100 value 917.222805
-## iter 110 value 909.578605
-## iter 120 value 904.884701
-## iter 130 value 884.008789
-## iter 140 value 881.890180
-## iter 150 value 881.523712
-## iter 160 value 881.336429
-## iter 170 value 877.763992
-## iter 180 value 877.432142
-## iter 190 value 877.150836
-## iter 200 value 876.799542
-## iter 210 value 876.346739
-## iter 220 value 876.299027
-## iter 230 value 876.256709
-## iter 240 value 876.049911
-## iter 250 value 875.612340
-## iter 260 value 874.869984
-## iter 270 value 874.552435
-## iter 280 value 874.227920
-## iter 290 value 873.978667
-## iter 300 value 873.901212
-## iter 310 value 873.879910
-## iter 320 value 873.859179
-## iter 330 value 873.711357
-## iter 340 value 873.060577
-## iter 350 value 872.863673
-## iter 360 value 872.577441
-## iter 370 value 872.384707
-## iter 380 value 872.127411
-## iter 390 value 871.977778
-## iter 400 value 871.876208
-## iter 410 value 871.847102
-## iter 420 value 871.508436
-## iter 430 value 871.060681
-## final  value 871.057527 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in New Delhi (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/NewDelhi_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Delhi")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "New Delhi") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  24 (15 variable)
-## initial  value 987.259468 
-## iter  10 value 209.938281
-## iter  20 value 191.017827
-## iter  30 value 189.292215
-## iter  40 value 188.434340
-## iter  50 value 187.750904
-## iter  60 value 187.394283
-## iter  70 value 187.164293
-## iter  80 value 187.015105
-## iter  90 value 186.962660
-## iter 100 value 186.868844
-## iter 110 value 186.823994
-## iter 120 value 186.791548
-## iter 130 value 186.759796
-## iter 140 value 186.719025
-## iter 150 value 186.694064
-## iter 160 value 186.685413
-## iter 170 value 186.677086
-## iter 180 value 186.655211
-## iter 190 value 186.632648
-## iter 200 value 186.619366
-## iter 210 value 186.607642
-## iter 220 value 186.588133
-## iter 230 value 186.576262
-## iter 240 value 186.566091
-## iter 250 value 186.539792
-## iter 260 value 186.514579
-## iter 270 value 186.512583
-## iter 280 value 186.498376
-## final  value 186.498347 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in New Delhi (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/NewDelhi_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "New Delhi") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  24 (15 variable)
-## initial  value 987.259468 
-## iter  10 value 209.938281
-## iter  20 value 191.017827
-## iter  30 value 189.292215
-## iter  40 value 188.434340
-## iter  50 value 187.750904
-## iter  60 value 187.394283
-## iter  70 value 187.164293
-## iter  80 value 187.015105
-## iter  90 value 186.962660
-## iter 100 value 186.868844
-## iter 110 value 186.823994
-## iter 120 value 186.791548
-## iter 130 value 186.759796
-## iter 140 value 186.719025
-## iter 150 value 186.694064
-## iter 160 value 186.685413
-## iter 170 value 186.677086
-## iter 180 value 186.655211
-## iter 190 value 186.632648
-## iter 200 value 186.619366
-## iter 210 value 186.607642
-## iter 220 value 186.588133
-## iter 230 value 186.576262
-## iter 240 value 186.566091
-## iter 250 value 186.539792
-## iter 260 value 186.514579
-## iter 270 value 186.512583
-## iter 280 value 186.498376
-## final  value 186.498347 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in New Delhi (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/NewDelhi_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Delhi_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Delhi_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Delhi_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Delhi_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Delhi_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Delhi_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Delhi_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Delhi_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Delhi_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Gujarat (India)

- - - Source: vignettes/VariantAnimation-Gujarat.Rmd -
VariantAnimation-Gujarat.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-state_counts <- as.data.frame(table(gisaid_india$State)) %>% rename(State = Var1, `Total sequences` = Freq)
-
-DT::datatable(state_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Gujarat -

-
-Gujarat_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong() %>% filter(State == "Gujarat")
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(Gujarat_monthly_cases)
-
##   MonthYear   State value      type
-## 1  Mar 2020 Gujarat    74 Confirmed
-## 2  Apr 2020 Gujarat  4321 Confirmed
-## 3  May 2020 Gujarat 12399 Confirmed
-## 4  Jun 2020 Gujarat 15849 Confirmed
-## 5  Jul 2020 Gujarat 28795 Confirmed
-## 6  Aug 2020 Gujarat 34997 Confirmed
-
-

Plot monthly cases for Gujarat -

-
-p1 <- BarPlot(Gujarat_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Gujarat (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Gujarat -

-
-Gujarat_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(State == "Gujarat"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(Gujarat_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Gujarat (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Gujarat sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-Gujarat_monthly_cases_tmp <- Gujarat_monthly_cases %>% select(MonthYear, value)
-Gujarat_monthly_cases_tmp$State <- "India"
-Gujarat_monthly_cases_tmp$type <- "Confirmed"
-
-Gujarat_monthly_cases_tmp <- Gujarat_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = Gujarat_seq_stats,
-  confirmed_long = Gujarat_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Gujarat (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(State == "Gujarat"))
-state_month_counts$State <- "Gujarat"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(State == "Gujarat") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(State %in% c("Gujarat")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  52 (36 variable)
-## initial  value 38764.079639 
-## iter  10 value 17744.693245
-## iter  20 value 15353.290900
-## iter  30 value 11804.024603
-## iter  40 value 11003.283524
-## iter  50 value 9855.261192
-## iter  60 value 9537.385392
-## iter  70 value 9478.499569
-## iter  80 value 9461.186853
-## iter  90 value 9456.051637
-## iter 100 value 9431.217254
-## iter 110 value 9407.310468
-## iter 120 value 9377.377643
-## iter 130 value 9344.599124
-## iter 140 value 9330.446441
-## iter 150 value 9322.375629
-## iter 160 value 9321.930201
-## iter 170 value 9317.108359
-## iter 180 value 9312.966862
-## iter 190 value 9309.077117
-## iter 200 value 9301.992421
-## iter 210 value 9286.413430
-## iter 220 value 9269.038826
-## iter 230 value 9268.396739
-## iter 240 value 9265.527420
-## iter 250 value 9262.656451
-## iter 260 value 9261.791977
-## iter 270 value 9260.319589
-## iter 280 value 9259.472335
-## iter 290 value 9258.206341
-## iter 300 value 9257.205463
-## iter 310 value 9257.153682
-## iter 320 value 9256.630873
-## iter 330 value 9255.452898
-## iter 340 value 9254.743776
-## iter 350 value 9253.155977
-## iter 360 value 9251.176747
-## iter 370 value 9250.928093
-## iter 380 value 9250.915270
-## iter 390 value 9250.734815
-## iter 400 value 9250.429761
-## iter 410 value 9250.151556
-## iter 420 value 9249.753608
-## iter 430 value 9249.158697
-## iter 440 value 9248.140073
-## iter 450 value 9248.120433
-## iter 460 value 9247.903035
-## iter 470 value 9247.734087
-## iter 480 value 9247.487534
-## iter 490 value 9247.092301
-## iter 500 value 9246.875676
-## iter 510 value 9246.698038
-## final  value 9246.641456 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Gujarat (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Gujarat_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(State %in% c("Gujarat")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Gujarat") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 21402.528439 
-## iter  10 value 10912.220209
-## iter  20 value 8286.883657
-## iter  30 value 6854.495448
-## iter  40 value 6689.035906
-## iter  50 value 6650.708185
-## iter  60 value 6608.192890
-## iter  70 value 6586.968376
-## iter  80 value 6547.505054
-## iter  90 value 6528.787140
-## iter 100 value 6527.524930
-## iter 110 value 6527.321975
-## final  value 6527.321571 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Gujarat (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Gujarat_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(State %in% c("Gujarat")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Gujarat") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 21402.528439 
-## iter  10 value 10912.220209
-## iter  20 value 8286.883657
-## iter  30 value 6854.495448
-## iter  40 value 6689.035906
-## iter  50 value 6650.708185
-## iter  60 value 6608.192890
-## iter  70 value 6586.968376
-## iter  80 value 6547.505054
-## iter  90 value 6528.787140
-## iter 100 value 6527.524930
-## iter 110 value 6527.321975
-## final  value 6527.321571 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Gujarat (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Gujarat_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Gujarat_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Gujarat_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Gujarat_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Gujarat_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Gujarat_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Gujarat_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. 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.paginate_button:active{background:#3a3a3a} diff --git a/docs/articles/VariantAnimation-Gujarat_files/dt-core-1.13.6/js/jquery.dataTables.min.js b/docs/articles/VariantAnimation-Gujarat_files/dt-core-1.13.6/js/jquery.dataTables.min.js deleted file mode 100644 index f786b0da..00000000 --- a/docs/articles/VariantAnimation-Gujarat_files/dt-core-1.13.6/js/jquery.dataTables.min.js +++ /dev/null @@ -1,4 +0,0 @@ -/*! DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Jaipur (India)

- - - Source: vignettes/VariantAnimation-Jaipur.Rmd -
VariantAnimation-Jaipur.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Jaipur -

-
-chennai_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District == "Jaipur")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(chennai_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [6]
-##   MonthYear State     District value
-##   <yearmon> <chr>     <chr>    <dbl>
-## 1 Apr 2020  Rajasthan Jaipur     907
-## 2 May 2020  Rajasthan Jaipur    1084
-## 3 Jun 2020  Rajasthan Jaipur    1327
-## 4 Jul 2020  Rajasthan Jaipur    2100
-## 5 Aug 2020  Rajasthan Jaipur    5373
-## 6 Sep 2020  Rajasthan Jaipur   10697
-
-

Plot monthly cases for Jaipur -

-
-p1 <- BarPlot(chennai_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Jaipur (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Jaipur -

-
-chennai_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "Jaipur"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(chennai_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Jaipur (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Jaipur sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-chennai_monthly_cases_tmp <- chennai_monthly_cases %>% select(MonthYear, value)
-chennai_monthly_cases_tmp$State <- "India"
-chennai_monthly_cases_tmp$type <- "Confirmed"
-
-chennai_monthly_cases_tmp <- chennai_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = chennai_seq_stats,
-  confirmed_long = chennai_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Jaipur (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "Jaipur") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Jaipur")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  40 (27 variable)
-## initial  value 11706.342613 
-## iter  10 value 4681.457858
-## iter  20 value 3325.044410
-## iter  30 value 2938.538953
-## iter  40 value 2903.499413
-## iter  50 value 2893.454462
-## iter  60 value 2886.934015
-## iter  70 value 2881.288738
-## iter  80 value 2878.495549
-## iter  90 value 2872.100772
-## iter 100 value 2865.587078
-## iter 110 value 2864.104513
-## iter 120 value 2864.001574
-## iter 130 value 2863.350780
-## iter 140 value 2862.395382
-## iter 150 value 2861.821554
-## iter 160 value 2861.059578
-## iter 170 value 2860.837644
-## iter 180 value 2860.742589
-## iter 190 value 2860.225128
-## iter 200 value 2859.887634
-## iter 210 value 2859.745341
-## iter 220 value 2859.447069
-## final  value 2859.442954 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Jaipur (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Jaipur_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Jaipur")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Jaipur") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  36 (24 variable)
-## initial  value 8342.861720 
-## iter  10 value 2201.853970
-## iter  20 value 1760.387081
-## iter  30 value 1741.001963
-## iter  40 value 1738.075480
-## iter  50 value 1737.470349
-## iter  60 value 1737.383133
-## iter  70 value 1737.021345
-## iter  80 value 1736.696090
-## iter  90 value 1735.985709
-## iter 100 value 1735.223423
-## iter 110 value 1735.215896
-## iter 120 value 1735.153141
-## iter 130 value 1735.093217
-## iter 140 value 1735.066843
-## iter 150 value 1735.054569
-## iter 160 value 1735.047039
-## iter 170 value 1735.045111
-## iter 180 value 1735.038829
-## iter 190 value 1734.946306
-## final  value 1734.930932 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Jaipur (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Jaipur_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(District %in% c("Jaipur")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Jaipur") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  36 (24 variable)
-## initial  value 8342.861720 
-## iter  10 value 2201.853970
-## iter  20 value 1760.387081
-## iter  30 value 1741.001963
-## iter  40 value 1738.075480
-## iter  50 value 1737.470349
-## iter  60 value 1737.383133
-## iter  70 value 1737.021345
-## iter  80 value 1736.696090
-## iter  90 value 1735.985709
-## iter 100 value 1735.223423
-## iter 110 value 1735.215896
-## iter 120 value 1735.153141
-## iter 130 value 1735.093217
-## iter 140 value 1735.066843
-## iter 150 value 1735.054569
-## iter 160 value 1735.047039
-## iter 170 value 1735.045111
-## iter 180 value 1735.038829
-## iter 190 value 1734.946306
-## final  value 1734.930932 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Jaipur (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Jaipur_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Jaipur_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Jaipur_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Jaipur_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Jaipur_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Jaipur_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Jaipur_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Jaipur_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Jaipur_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Jaipur_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Maharashtra (India)

- - - Source: vignettes/VariantAnimation-Maharashtra.Rmd -
VariantAnimation-Maharashtra.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-state_counts <- as.data.frame(table(gisaid_india$State)) %>% rename(State = Var1, `Total sequences` = Freq)
-
-DT::datatable(state_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Maharashtra -

-
-Maharashtra_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong() %>% filter(State == "Maharashtra")
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(Maharashtra_monthly_cases)
-
##   MonthYear       State  value      type
-## 1  Mar 2020 Maharashtra    302 Confirmed
-## 2  Apr 2020 Maharashtra  10196 Confirmed
-## 3  May 2020 Maharashtra  57157 Confirmed
-## 4  Jun 2020 Maharashtra 107106 Confirmed
-## 5  Jul 2020 Maharashtra 247357 Confirmed
-## 6  Aug 2020 Maharashtra 370423 Confirmed
-
-

Plot monthly cases for Maharashtra -

-
-p1 <- BarPlot(Maharashtra_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Maharashtra (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Maharashtra -

-
-Maharashtra_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(State == "Maharashtra"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(Maharashtra_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Maharashtra (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Maharashtra sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-Maharashtra_monthly_cases_tmp <- Maharashtra_monthly_cases %>% select(MonthYear, value)
-Maharashtra_monthly_cases_tmp$State <- "India"
-Maharashtra_monthly_cases_tmp$type <- "Confirmed"
-
-Maharashtra_monthly_cases_tmp <- Maharashtra_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = Maharashtra_seq_stats,
-  confirmed_long = Maharashtra_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Maharashtra (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(State == "Maharashtra"))
-state_month_counts$State <- "Maharashtra"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(State == "Maharashtra") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(State %in% c("Maharashtra")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  56 (39 variable)
-## initial  value 92290.473874 
-## iter  10 value 43786.967640
-## iter  20 value 38091.652452
-## iter  30 value 29729.814614
-## iter  40 value 23751.363919
-## iter  50 value 22918.378841
-## iter  60 value 22241.960092
-## iter  70 value 21845.092602
-## iter  80 value 21640.028155
-## iter  90 value 21631.796291
-## iter 100 value 21489.927178
-## iter 110 value 21354.827950
-## iter 120 value 21295.057141
-## iter 130 value 21178.168747
-## iter 140 value 21137.030647
-## iter 150 value 21086.081089
-## iter 160 value 21079.634831
-## iter 170 value 21079.576266
-## iter 180 value 21078.868718
-## iter 190 value 21077.226378
-## iter 200 value 21072.273570
-## iter 210 value 21065.960936
-## iter 220 value 21062.511129
-## iter 230 value 21056.534789
-## iter 240 value 21046.623545
-## iter 250 value 21046.531874
-## iter 260 value 21043.480253
-## iter 270 value 21041.654565
-## iter 280 value 21038.878821
-## iter 290 value 21037.633188
-## iter 300 value 21035.886300
-## iter 310 value 21035.108472
-## final  value 21034.906542 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Maharashtra (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Maharashtra_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(State %in% c("Maharashtra")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Maharashtra") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 37958.682168 
-## iter  10 value 17440.035895
-## iter  20 value 14321.931849
-## iter  30 value 12536.769841
-## iter  40 value 12219.945997
-## iter  50 value 12169.134388
-## iter  60 value 12132.151435
-## iter  70 value 12120.294917
-## iter  80 value 12108.850280
-## iter  90 value 12089.693685
-## iter 100 value 12083.727592
-## iter 110 value 12080.349532
-## iter 120 value 12079.978119
-## final  value 12079.589240 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Maharashtra (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Maharashtra_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(State %in% c("Maharashtra")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Maharashtra") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 37958.682168 
-## iter  10 value 17440.035895
-## iter  20 value 14321.931849
-## iter  30 value 12536.769841
-## iter  40 value 12219.945997
-## iter  50 value 12169.134388
-## iter  60 value 12132.151435
-## iter  70 value 12120.294917
-## iter  80 value 12108.850280
-## iter  90 value 12089.693685
-## iter 100 value 12083.727592
-## iter 110 value 12080.349532
-## iter 120 value 12079.978119
-## final  value 12079.589240 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Maharashtra (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Maharashtra_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Maharashtra_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Maharashtra_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Maharashtra_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Maharashtra_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Maharashtra_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Maharashtra_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Maharashtra_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Mumbai (India)

- - - Source: vignettes/VariantAnimation-Mumbai.Rmd -
VariantAnimation-Mumbai.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Mumbai -

-
-Mumbai_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District == "Mumbai")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(Mumbai_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [6]
-##   MonthYear State       District value
-##   <yearmon> <chr>       <chr>    <dbl>
-## 1 Apr 2020  Maharashtra Mumbai    7061
-## 2 May 2020  Maharashtra Mumbai   32625
-## 3 Jun 2020  Maharashtra Mumbai   37972
-## 4 Jul 2020  Maharashtra Mumbai   36626
-## 5 Aug 2020  Maharashtra Mumbai   32340
-## 6 Sep 2020  Maharashtra Mumbai   59463
-
-

Plot monthly cases for Mumbai -

-
-p1 <- BarPlot(Mumbai_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Mumbai (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Mumbai -

-
-Mumbai_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "Mumbai"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(Mumbai_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Mumbai (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Mumbai sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-Mumbai_monthly_cases_tmp <- Mumbai_monthly_cases %>% select(MonthYear, value)
-Mumbai_monthly_cases_tmp$State <- "India"
-Mumbai_monthly_cases_tmp$type <- "Confirmed"
-
-Mumbai_monthly_cases_tmp <- Mumbai_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = Mumbai_seq_stats,
-  confirmed_long = Mumbai_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Mumbai (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(custom_city == "Mumbai"))
-state_month_counts$State <- "Mumbai"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "Mumbai") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Mumbai")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  44 (30 variable)
-## initial  value 15574.329797 
-## iter  10 value 7180.065979
-## iter  20 value 4687.044311
-## iter  30 value 4136.486563
-## iter  40 value 3969.175266
-## iter  50 value 3825.992578
-## iter  60 value 3799.447246
-## iter  70 value 3780.892669
-## iter  80 value 3777.022187
-## iter  90 value 3766.742649
-## iter 100 value 3759.681911
-## iter 110 value 3750.156800
-## iter 120 value 3732.670839
-## iter 130 value 3732.047471
-## iter 140 value 3729.770426
-## iter 150 value 3727.391408
-## iter 160 value 3725.303330
-## iter 170 value 3721.171763
-## iter 180 value 3718.983600
-## iter 190 value 3718.679393
-## iter 200 value 3718.266131
-## iter 210 value 3717.388299
-## iter 220 value 3716.550086
-## iter 230 value 3714.654290
-## iter 240 value 3711.627573
-## iter 250 value 3709.147146
-## iter 260 value 3707.628286
-## iter 270 value 3706.024933
-## iter 280 value 3705.084712
-## iter 290 value 3704.698938
-## iter 300 value 3704.246987
-## final  value 3703.258517 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Mumbai (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Mumbai_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Mumbai")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Mumbai") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 8236.346878 
-## iter  10 value 3535.607096
-## iter  20 value 2813.442453
-## iter  30 value 2610.377376
-## iter  40 value 2578.461798
-## iter  50 value 2569.905312
-## iter  60 value 2553.883708
-## iter  70 value 2552.515452
-## iter  80 value 2550.730665
-## iter  90 value 2548.764127
-## iter 100 value 2546.005380
-## iter 110 value 2544.766794
-## iter 120 value 2544.734442
-## iter 130 value 2544.663193
-## iter 140 value 2544.585915
-## iter 150 value 2544.447931
-## iter 160 value 2544.395797
-## iter 170 value 2544.295029
-## iter 180 value 2544.210785
-## iter 190 value 2544.163845
-## iter 200 value 2544.089318
-## iter 210 value 2543.958257
-## iter 220 value 2543.905407
-## final  value 2543.903712 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Mumbai (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Mumbai_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(District %in% c("Mumbai")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Mumbai") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 8236.346878 
-## iter  10 value 3535.607096
-## iter  20 value 2813.442453
-## iter  30 value 2610.377376
-## iter  40 value 2578.461798
-## iter  50 value 2569.905312
-## iter  60 value 2553.883708
-## iter  70 value 2552.515452
-## iter  80 value 2550.730665
-## iter  90 value 2548.764127
-## iter 100 value 2546.005380
-## iter 110 value 2544.766794
-## iter 120 value 2544.734442
-## iter 130 value 2544.663193
-## iter 140 value 2544.585915
-## iter 150 value 2544.447931
-## iter 160 value 2544.395797
-## iter 170 value 2544.295029
-## iter 180 value 2544.210785
-## iter 190 value 2544.163845
-## iter 200 value 2544.089318
-## iter 210 value 2543.958257
-## iter 220 value 2543.905407
-## final  value 2543.903712 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Mumbai (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Mumbai_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Mumbai_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Mumbai_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Mumbai_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Mumbai_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Mumbai_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Mumbai_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Mumbai_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Mumbai_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Mumbai_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Pune (India)

- - - Source: vignettes/VariantAnimation-Pune.Rmd -
VariantAnimation-Pune.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Pune -

-
-pune_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District == "Pune")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(pune_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [6]
-##   MonthYear State       District  value
-##   <yearmon> <chr>       <chr>     <dbl>
-## 1 Apr 2020  Maharashtra Pune       1248
-## 2 May 2020  Maharashtra Pune       6671
-## 3 Jun 2020  Maharashtra Pune      14408
-## 4 Jul 2020  Maharashtra Pune      66904
-## 5 Aug 2020  Maharashtra Pune      85874
-## 6 Sep 2020  Maharashtra Pune     117959
-
-

Plot monthly cases for Pune -

-
-p1 <- BarPlot(pune_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Pune (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Pune -

-
-pune_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "Pune"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(pune_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Pune (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Pune sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-pune_monthly_cases_tmp <- pune_monthly_cases %>% select(MonthYear, value)
-pune_monthly_cases_tmp$State <- "India"
-pune_monthly_cases_tmp$type <- "Confirmed"
-
-pune_monthly_cases_tmp <- pune_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = pune_seq_stats,
-  confirmed_long = pune_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Pune (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "Pune") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Pune")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  52 (36 variable)
-## initial  value 26365.114445 
-## iter  10 value 10731.681151
-## iter  20 value 8389.572652
-## iter  30 value 6956.285036
-## iter  40 value 6724.558551
-## iter  50 value 6644.032773
-## iter  60 value 6616.894159
-## iter  70 value 6587.235569
-## iter  80 value 6577.882868
-## iter  90 value 6565.279637
-## iter 100 value 6550.615508
-## iter 110 value 6530.419414
-## iter 120 value 6467.482211
-## iter 130 value 6439.851698
-## iter 140 value 6433.203889
-## iter 150 value 6431.338248
-## iter 160 value 6431.072707
-## iter 170 value 6429.650312
-## iter 180 value 6424.966426
-## iter 190 value 6413.818624
-## iter 200 value 6406.000393
-## iter 210 value 6404.379934
-## iter 220 value 6401.117424
-## iter 220 value 6401.117420
-## final  value 6401.117420 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Pune (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Pune_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Pune")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Pune") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 10212.635967 
-## iter  10 value 4590.350258
-## iter  20 value 3862.561393
-## iter  30 value 3544.750729
-## iter  40 value 3498.023239
-## iter  50 value 3486.433437
-## iter  60 value 3483.069952
-## iter  70 value 3481.649036
-## iter  80 value 3479.685451
-## iter  90 value 3477.707985
-## iter 100 value 3474.316912
-## iter 110 value 3469.635470
-## iter 120 value 3467.322351
-## iter 130 value 3467.158034
-## iter 140 value 3466.778290
-## iter 150 value 3466.453209
-## iter 160 value 3466.383448
-## iter 170 value 3466.319461
-## iter 180 value 3466.184408
-## iter 190 value 3464.589688
-## iter 200 value 3464.203208
-## iter 210 value 3464.012242
-## iter 220 value 3463.948100
-## iter 230 value 3463.938896
-## iter 240 value 3463.904465
-## iter 250 value 3463.886884
-## iter 260 value 3463.879986
-## iter 270 value 3463.859002
-## iter 280 value 3463.842795
-## iter 290 value 3463.830995
-## iter 300 value 3463.563810
-## iter 310 value 3463.375418
-## iter 320 value 3463.337145
-## iter 330 value 3463.179199
-## iter 340 value 3463.123598
-## iter 350 value 3463.096437
-## iter 360 value 3463.085424
-## final  value 3463.079789 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Pune (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Pune_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(District %in% c("Pune")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Pune") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 10212.635967 
-## iter  10 value 4590.350258
-## iter  20 value 3862.561393
-## iter  30 value 3544.750729
-## iter  40 value 3498.023239
-## iter  50 value 3486.433437
-## iter  60 value 3483.069952
-## iter  70 value 3481.649036
-## iter  80 value 3479.685451
-## iter  90 value 3477.707985
-## iter 100 value 3474.316912
-## iter 110 value 3469.635470
-## iter 120 value 3467.322351
-## iter 130 value 3467.158034
-## iter 140 value 3466.778290
-## iter 150 value 3466.453209
-## iter 160 value 3466.383448
-## iter 170 value 3466.319461
-## iter 180 value 3466.184408
-## iter 190 value 3464.589688
-## iter 200 value 3464.203208
-## iter 210 value 3464.012242
-## iter 220 value 3463.948100
-## iter 230 value 3463.938896
-## iter 240 value 3463.904465
-## iter 250 value 3463.886884
-## iter 260 value 3463.879986
-## iter 270 value 3463.859002
-## iter 280 value 3463.842795
-## iter 290 value 3463.830995
-## iter 300 value 3463.563810
-## iter 310 value 3463.375418
-## iter 320 value 3463.337145
-## iter 330 value 3463.179199
-## iter 340 value 3463.123598
-## iter 350 value 3463.096437
-## iter 360 value 3463.085424
-## final  value 3463.079789 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Pune (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Pune_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Pune_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Pune_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Pune_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Pune_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Pune_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Pune_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Pune_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Pune_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Pune_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Pune_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Pune_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Pune_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Pune_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - -
-
-

Animation of projected weekly cases - South Africa

- - - Source: vignettes/VariantAnimation-SouthAfrica.Rmd -
VariantAnimation-SouthAfrica.Rmd
-
- - - - -
-

Get variants data for South Africa -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_South_Africa<- gisaid_metadata %>%
-  filter(Country == "South Africa") %>%
-  filter(Host == "Human")
-# format metadata
-gisaid_South_Africa<- FormatGISAIDMetadata(gisaid_South_Africa)
-gisaid_South_Africa<- gisaid_South_Africa%>%
-  arrange(State, MonthYearCollected) %>%
-  filter(pangolin_lineage != "Unknown")
-
-vocs <- GetVOCs()
-custom_voc_mapping <- list(
-  `JN.1` = "JN.1",
-  `JN.1.*` = "JN.1",
-  `HV.1` = "HV.1",
-  `HV.1.*` = "HV.1"
-)
-gisaid_South_Africa<- gisaid_South_Africa%>% filter(pangolin_lineage != "None")
-
-gisaid_South_Africa<- CollapseLineageToVOCs(
-  variant_df = gisaid_South_Africa,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Get weekly cases for South Africa -

-
-GetCases <- function() {
-  data <- read.csv("https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/cases_deaths/new_cases.csv")
-  confirmed <- data %>% select(date, South.Africa)
-  colnames(confirmed)[2] <- c("cases")
-  confirmed$MonthYear <- GetMonthYear(confirmed$date)
-  confirmed$WeekYear <- tsibble::yearweek(confirmed$date)
-  return(confirmed)
-}
-
-
-GetCasesLong <- function() {
-  data <- read.csv("https://raw.githubusercontent.com/owid/covid-19-data/master/public/data/cases_deaths/new_cases.csv")
-  confirmed <- data %>% select(date, South.Africa)
-  colnames(confirmed)[2] <- c("cases")
-  confirmed$MonthYear <- GetMonthYear(confirmed$date)
-  confirmed$WeekYear <- tsibble::yearweek(confirmed$date)
-  confirmed_subset_weekwise <- confirmed %>%
-    group_by(WeekYear) %>%
-    summarise(cases = mean(cases, na.rm = T)) %>%
-    arrange(WeekYear)
-  confirmed_subset_weekwise$cases <- ceiling(confirmed_subset_weekwise$cases)
-  confirmed_subset_dateweekwise_long_india <- confirmed_subset_weekwise %>%
-    rename(n = cases) %>%
-    rename(WeekYearCollected = WeekYear)
-}
-
-
-confirmed <- GetCases()
-confirmed_subset_dateweekwise_long <- GetCasesLong()
-gisaid_South_Africa_weekwise <- SummarizeVariantsWeekwise(gisaid_South_Africa)
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_South_Africa)
-state_month_counts$State <- "South Africa"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-voc_to_keep <- gisaid_South_Africa_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 50) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_South_Africa_weekwise <- gisaid_South_Africa_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-South_Africa_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_South_Africa_weekwise, confirmed_subset_dateweekwise_long)
-#> # weights:  16 (9 variable)
-#> initial  value 76682.872585 
-#> iter  10 value 43003.485789
-#> iter  20 value 32374.818797
-#> iter  30 value 30927.203681
-#> final  value 30853.004403 
-#> converged
-the_anim <- PlotVariantPrevalenceAnimated(South_Africa_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in South Africa by variant", caption = "**Source: gisaid.org and ourworldindata.org/coronavirus**<br>", date_breaks = "100 days")
-gganimate::anim_save(filename = here::here("docs/articles/South_Africa_animated.gif"), animation = the_anim)
-

-

Look at cases from 2022,

-
-confirmed_subset_dateweekwise_long <- GetCasesLong() %>%
-  filter(WeekYearCollected >= tsibble::yearweek("2021 W35"))
-
-gisaid_South_Africa_subset <- gisaid_South_Africa%>% filter(MonthYearCollected > "Oct 2021")
-gisaid_South_Africa_weekwise <- SummarizeVariantsWeekwise(gisaid_South_Africa_subset)
-
-voc_to_keep <- gisaid_South_Africa_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 50) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_South_Africa_weekwise <- gisaid_South_Africa_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-South_Africa_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_South_Africa_weekwise, confirmed_subset_dateweekwise_long)
-#> # weights:  16 (9 variable)
-#> initial  value 38577.799481 
-#> iter  10 value 12403.598525
-#> iter  20 value 11748.439819
-#> iter  30 value 11741.935580
-#> final  value 11741.923305 
-#> converged
-the_anim <- PlotVariantPrevalenceAnimated(South_Africa_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in South Africa by variant", caption = "**Source: gisaid.org and ourworldindata.org/coronavirus**<br>", date_breaks = "100 days")
-gganimate::anim_save(filename = here::here("docs/articles/South_Africa_animated_2021.gif"), animation = the_anim)
-

Look at cases from -2023

-
-confirmed_subset_dateweekwise_long <- GetCasesLong() %>%
-  filter(WeekYearCollected >= tsibble::yearweek("2022 W35"))
-
-gisaid_South_Africa_subset <- gisaid_South_Africa%>% filter(MonthYearCollected > "October 2022")
-gisaid_South_Africa_weekwise <- SummarizeVariantsWeekwise(gisaid_South_Africa_subset)
-
-voc_to_keep <- gisaid_South_Africa_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 50) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_South_Africa_weekwise <- gisaid_South_Africa_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-South_Africa_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_South_Africa_weekwise, confirmed_subset_dateweekwise_long)
-#> # weights:  12 (6 variable)
-#> initial  value 6457.643033 
-#> iter  10 value 4860.204046
-#> final  value 4855.833005 
-#> converged
-the_anim <- PlotVariantPrevalenceAnimated(South_Africa_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in South Africa by variant", caption = "**Source: gisaid.org and ourworldindata.org/coronavirus**<br>")
-gganimate::anim_save(filename = here::here("docs/articles/South_Africa_animated_2023.gif"), animation = the_anim)
-

-

Look at cases in the past few weeks

-
-confirmed_subset_dateweekwise_long <- GetCasesLong() %>%
-  filter(WeekYearCollected >= tsibble::yearweek("2023 W23"))
-
-gisaid_South_Africa_subset <- gisaid_South_Africa%>% filter(MonthYearCollected > "June 2023")
-gisaid_South_Africa_weekwise <- SummarizeVariantsWeekwise(gisaid_South_Africa_subset)
-
-voc_to_keep <- gisaid_South_Africa_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 50) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_South_Africa_weekwise <- gisaid_South_Africa_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-South_Africa_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_South_Africa_weekwise, confirmed_subset_dateweekwise_long)
-#> # weights:  12 (6 variable)
-#> initial  value 1006.328856 
-#> iter  10 value 903.820969
-#> final  value 903.820954 
-#> converged
-the_anim <- PlotVariantPrevalenceAnimated(South_Africa_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in South Africa by variant", caption = "**Source: gisaid.org and ourworldindata.org/coronavirus**<br>")
-gganimate::anim_save(filename = here::here("docs/articles/South_Africa_animated_2024.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-SouthAfrica_files/figure-html/unnamed-chunk-5-1.png b/docs/articles/VariantAnimation-SouthAfrica_files/figure-html/unnamed-chunk-5-1.png deleted file mode 100644 index b32fb0a0..00000000 Binary files a/docs/articles/VariantAnimation-SouthAfrica_files/figure-html/unnamed-chunk-5-1.png and /dev/null differ diff --git a/docs/articles/VariantAnimation-Tamilnadu.html b/docs/articles/VariantAnimation-Tamilnadu.html deleted file mode 100644 index 4312deb2..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu.html +++ /dev/null @@ -1,478 +0,0 @@ - - - - - - - - -Animation of projected weekly cases - Tamil Nadu (India) • covmuller - - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Tamil Nadu (India)

- - - Source: vignettes/VariantAnimation-Tamilnadu.Rmd -
VariantAnimation-Tamilnadu.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-state_counts <- as.data.frame(table(gisaid_india$State)) %>% rename(State = Var1, `Total sequences` = Freq)
-
-DT::datatable(state_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Tamilnadu -

-
-Tamilnadu_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong() %>% filter(State == "Tamil Nadu")
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(Tamilnadu_monthly_cases)
-
##   MonthYear      State  value      type
-## 1  Mar 2020 Tamil Nadu    124 Confirmed
-## 2  Apr 2020 Tamil Nadu   2199 Confirmed
-## 3  May 2020 Tamil Nadu  20010 Confirmed
-## 4  Jun 2020 Tamil Nadu  67834 Confirmed
-## 5  Jul 2020 Tamil Nadu 155692 Confirmed
-## 6  Aug 2020 Tamil Nadu 182182 Confirmed
-
-

Plot monthly cases for Tamilnadu -

-
-p1 <- BarPlot(Tamilnadu_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Tamilnadu (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Tamilnadu -

-
-Tamilnadu_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(State == "Tamil Nadu"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(Tamilnadu_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Tamilnadu (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Tamilnadu sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-Tamilnadu_monthly_cases_tmp <- Tamilnadu_monthly_cases %>% select(MonthYear, value)
-Tamilnadu_monthly_cases_tmp$State <- "India"
-Tamilnadu_monthly_cases_tmp$type <- "Confirmed"
-
-Tamilnadu_monthly_cases_tmp <- Tamilnadu_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = Tamilnadu_seq_stats,
-  confirmed_long = Tamilnadu_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Tamilnadu (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(State == "Tamil Nadu"))
-state_month_counts$State <- "Tamil Nadu"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(State == "Tamil Nadu") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(State %in% c("Tamil Nadu")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  52 (36 variable)
-## initial  value 48882.804855 
-## iter  10 value 22261.083247
-## iter  20 value 16795.407813
-## iter  30 value 14581.674819
-## iter  40 value 13685.708514
-## iter  50 value 13450.947012
-## iter  60 value 13385.513385
-## iter  70 value 13270.613242
-## iter  80 value 13159.881372
-## iter  90 value 13086.982518
-## iter 100 value 13029.959873
-## iter 110 value 13016.284117
-## iter 120 value 13004.515557
-## iter 130 value 12983.865946
-## iter 140 value 12968.678387
-## iter 150 value 12964.228832
-## iter 160 value 12963.962687
-## iter 170 value 12960.911855
-## iter 180 value 12956.023478
-## iter 190 value 12952.260955
-## iter 200 value 12951.643359
-## iter 210 value 12947.955831
-## iter 220 value 12945.278961
-## iter 220 value 12945.278839
-## final  value 12945.278839 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Tamil Nadu (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Tamilnadu_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(State %in% c("Tamil Nadu")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Tamil Nadu") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 21887.988050 
-## iter  10 value 12913.556566
-## iter  20 value 10039.840106
-## iter  30 value 9160.350931
-## iter  40 value 9024.790026
-## iter  50 value 8994.142902
-## iter  60 value 8989.212071
-## iter  70 value 8986.497678
-## iter  80 value 8983.372214
-## iter  90 value 8977.915907
-## iter 100 value 8973.008756
-## iter 110 value 8970.750450
-## iter 120 value 8970.597054
-## final  value 8970.575063 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Tamil Nadu (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Tamilnadu_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(State %in% c("Tamil Nadu")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Tamil Nadu") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 21887.988050 
-## iter  10 value 12913.556566
-## iter  20 value 10039.840106
-## iter  30 value 9160.350931
-## iter  40 value 9024.790026
-## iter  50 value 8994.142902
-## iter  60 value 8989.212071
-## iter  70 value 8986.497678
-## iter  80 value 8983.372214
-## iter  90 value 8977.915907
-## iter 100 value 8973.008756
-## iter 110 value 8970.750450
-## iter 120 value 8970.597054
-## final  value 8970.575063 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Tamil Nadu (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Tamilnadu_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Tamilnadu_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Tamilnadu_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Tamilnadu_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VariantAnimation-Tamilnadu_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VariantAnimation-Tamilnadu_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VariantAnimation-Tamilnadu_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Telangana (India)

- - - Source: vignettes/VariantAnimation-Telangana.Rmd -
VariantAnimation-Telangana.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1` = "BA.1",
-  `BA.1.*` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.*` = "BA.2",
-  `BA.3` = "BA.3",
-  `BA.3.*` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.4.*` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.5.*` = "BA.5",
-  `XBB` = "XBB",
-  `XBB.1` = "XBB.1+",
-  `XBB.1.*` = "XBB.1+",
-  `XBB.1.5` = "XBB.1.5",
-  `BQ.1` = "BQ.1",
-  `BQ.1.*` = "BQ.1"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-state_counts <- as.data.frame(table(gisaid_india$State)) %>% rename(State = Var1, `Total sequences` = Freq)
-
-DT::datatable(state_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Telangana -

-
-Telangana_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong() %>% filter(State == "Telangana")
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(Telangana_monthly_cases)
-
##   MonthYear     State value      type
-## 1  Mar 2020 Telangana    97 Confirmed
-## 2  Apr 2020 Telangana   941 Confirmed
-## 3  May 2020 Telangana  1660 Confirmed
-## 4  Jun 2020 Telangana 13641 Confirmed
-## 5  Jul 2020 Telangana 46364 Confirmed
-## 6  Aug 2020 Telangana 61750 Confirmed
-
-

Plot monthly cases for Telangana -

-
-p1 <- BarPlot(Telangana_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Telangana (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Telangana -

-
-Telangana_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(State == "Telangana"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(Telangana_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Telangana (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Telangana sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-Telangana_monthly_cases_tmp <- Telangana_monthly_cases %>% select(MonthYear, value)
-Telangana_monthly_cases_tmp$State <- "India"
-Telangana_monthly_cases_tmp$type <- "Confirmed"
-
-Telangana_monthly_cases_tmp <- Telangana_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = Telangana_seq_stats,
-  confirmed_long = Telangana_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Telangana (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Distribution of variants -

-
-state_month_counts <- SummarizeVariantsMonthwise(gisaid_india %>% filter(State == "Telangana"))
-state_month_counts$State <- "Telangana"
-state_month_prevalence <- CountsToPrevalence(state_month_counts)
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-
-vocs[["omicron"]] <- NULL
-state_month_prevalence <- CollapseLineageToVOCs(
-  variant_df = state_month_prevalence,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping, summarize = FALSE
-)
-
-p5 <- StackedBarPlotPrevalence(state_month_prevalence)
-p5
-

-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(State == "Telangana") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(State %in% c("Telangana")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  60 (42 variable)
-## initial  value 53706.051588 
-## iter  10 value 19089.948274
-## iter  20 value 15271.923578
-## iter  30 value 12165.385199
-## iter  40 value 11696.811843
-## iter  50 value 11531.488444
-## iter  60 value 11407.396612
-## iter  70 value 11390.805643
-## iter  80 value 11378.215547
-## iter  90 value 11372.121578
-## iter 100 value 11368.524855
-## iter 110 value 11347.166496
-## iter 120 value 11338.343161
-## iter 130 value 11319.031443
-## iter 140 value 11304.937484
-## iter 150 value 11290.069718
-## iter 160 value 11284.086458
-## iter 170 value 11282.193713
-## iter 180 value 11281.614269
-## iter 190 value 11281.398993
-## iter 200 value 11277.649494
-## iter 210 value 11274.836315
-## iter 220 value 11274.261561
-## iter 230 value 11272.803028
-## iter 240 value 11269.009386
-## iter 250 value 11267.733930
-## iter 260 value 11266.798701
-## iter 270 value 11266.473193
-## iter 280 value 11266.188635
-## iter 290 value 11265.585484
-## iter 300 value 11264.690201
-## iter 310 value 11263.097225
-## iter 320 value 11262.670208
-## iter 330 value 11262.365255
-## iter 340 value 11261.702540
-## final  value 11261.523708 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Telangana (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Telangana_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(State %in% c("Telangana")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Telangana") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 20362.926657 
-## iter  10 value 8450.907437
-## iter  20 value 6005.436485
-## iter  30 value 5648.379329
-## iter  40 value 5595.073447
-## iter  50 value 5569.751321
-## iter  60 value 5563.255333
-## iter  70 value 5561.890705
-## iter  80 value 5559.413501
-## iter  90 value 5557.122944
-## iter 100 value 5556.345239
-## iter 110 value 5555.493314
-## iter 120 value 5555.244005
-## final  value 5555.165026 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Telangana (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Telangana_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong()
-
## Rows: 3183 Columns: 42
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr   (2): Date, Status
-## dbl  (39): TT, AN, AP, AR, AS, BR, CH, CT, DN, DD, DL, GA, GJ, HR, HP, JK, J...
-## date  (1): Date_YMD
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(State %in% c("Telangana")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(State == "Telangana") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  44 (30 variable)
-## initial  value 20362.926657 
-## iter  10 value 8450.907437
-## iter  20 value 6005.436485
-## iter  30 value 5648.379329
-## iter  40 value 5595.073447
-## iter  50 value 5569.751321
-## iter  60 value 5563.255333
-## iter  70 value 5561.890705
-## iter  80 value 5559.413501
-## iter  90 value 5557.122944
-## iter 100 value 5556.345239
-## iter 110 value 5555.493314
-## iter 120 value 5555.244005
-## final  value 5555.165026 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Telangana (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Telangana_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VariantAnimation-Telangana_files/datatables-binding-0.31/datatables.js b/docs/articles/VariantAnimation-Telangana_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VariantAnimation-Telangana_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VariantAnimation-Telangana_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VariantAnimation-Telangana_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VariantAnimation-Telangana_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VariantAnimation-Telangana_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. 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DataTables 1.13.6 - * ©2008-2023 SpryMedia Ltd - datatables.net/license - */ -!function(n){"use strict";var a;"function"==typeof define&&define.amd?define(["jquery"],function(t){return n(t,window,document)}):"object"==typeof exports?(a=require("jquery"),"undefined"==typeof window?module.exports=function(t,e){return t=t||window,e=e||a(t),n(e,t,t.document)}:n(a,window,window.document)):window.DataTable=n(jQuery,window,document)}(function(P,j,v,H){"use strict";function d(t){var e=parseInt(t,10);return!isNaN(e)&&isFinite(t)?e:null}function l(t,e,n){var a=typeof t,r="string"==a;return"number"==a||"bigint"==a||!!h(t)||(e&&r&&(t=$(t,e)),n&&r&&(t=t.replace(q,"")),!isNaN(parseFloat(t))&&isFinite(t))}function a(t,e,n){var a;return!!h(t)||(h(a=t)||"string"==typeof a)&&!!l(t.replace(V,"").replace(/ - - - - - - - - - Skip to contents - - -
- - - - - - - -
-
-

Animation of projected weekly cases - Kolkata (India)

- - - Source: vignettes/VarinatAnimation-Kolkata.Rmd -
VarinatAnimation-Kolkata.Rmd
-
- - - - -
-

Get variants data for India -

-
-gisaid_metadata <- qs::qread("~/data/epicov/metadata_tsv_2024_01_11.qs")
-gisaid_india <- FilterGISAIDIndia(gisaid_metadata_all = gisaid_metadata)
-
-vocs <- GetVOCs()
-omicron <- vocs[["omicron"]]
-vocs[["omicron"]] <- NULL
-custom_voc_mapping <- list(
-  `BA.1.1` = "BA.1",
-  `BA.1` = "BA.1",
-  `BA.2` = "BA.2",
-  `BA.2.10` = "BA.2.X",
-  `BA.2.10.1` = "BA.2.X",
-  `BA.2.12` = "BA.2.X",
-  `BA.2.12.1` = "BA.2.X",
-  `BA.3` = "BA.3",
-  `BA.4` = "BA.4",
-  `BA.5` = "BA.5",
-  `BA.2.74` = "BA.2.X",
-  `BA.2.75` = "BA.2.75",
-  `BA.2.76` = "BA.2.X",
-  `XBB.*` = "XBB",
-  `BQ.1` = "BQ.1+",
-  `BQ.1.*` = "BQ.1+"
-)
-gisaid_india <- gisaid_india %>%
-  filter(pangolin_lineage != "None") %>%
-  filter(pangolin_lineage != "Unassigned")
-
-gisaid_india$District <- stringr::str_to_title(gisaid_india$District)
-gisaid_india$City <- stringr::str_to_title(gisaid_india$City)
-
-gisaid_india$custom_city <- gisaid_india$City
-gisaid_india$custom_city[gisaid_india$custom_city == ""] <- gisaid_india$District[gisaid_india$custom_city == ""]
-
-gisaid_india$custom_city <- stringr::str_to_title(gisaid_india$custom_city)
-
-gisaid_india <- CollapseLineageToVOCs(
-  variant_df = gisaid_india,
-  vocs = vocs,
-  custom_voc_mapping = custom_voc_mapping,
-  summarize = FALSE
-)
-
-
-

Top 10 cities with most number of sequenced samples -

-
-city_counts <- as.data.frame(table(gisaid_india$custom_city)) %>% rename(City = Var1, `Total sequences` = Freq)
-
-DT::datatable(city_counts %>% arrange(desc(`Total sequences`)))
-
- -
-
-

Get monthly cases for Kolkata -

-
-chennai_monthly_cases <- GetIndiaConfirmedCasesMonthlyLong(level = "district") %>% filter(District == "Kolkata")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-head(chennai_monthly_cases)
-
## # A tibble: 6 × 4
-## # Groups:   MonthYear, State [6]
-##   MonthYear State       District value
-##   <yearmon> <chr>       <chr>    <dbl>
-## 1 Apr 2020  West Bengal Kolkata    184
-## 2 May 2020  West Bengal Kolkata   1941
-## 3 Jun 2020  West Bengal Kolkata   3859
-## 4 Jul 2020  West Bengal Kolkata  15655
-## 5 Aug 2020  West Bengal Kolkata  18518
-## 6 Sep 2020  West Bengal Kolkata  16255
-
-

Plot monthly cases for Kolkata -

-
-p1 <- BarPlot(chennai_monthly_cases, ylabel = "Cases per month", label_si = TRUE, title = "Total cases per month - Kolkata (India)", caption = "**Source: covid19bharat.org**<br>")
-p1
-

-
-
-
-

Get weekly cases for Kolkata -

-
-chennai_seq_stats <- TotalSequencesPerMonthCountrywise(gisaid_india %>% filter(custom_city == "Kolkata"), rename_country_as_state = TRUE)
-
-
-p2 <- BarPlot(chennai_seq_stats, ylabel = "Sequenced per month", color = "slateblue1", label_si = TRUE, title = "Total sequences deposited to GISAID from Kolkata (India)", caption = "**Source: gisaid.org **<br>")
-p2
-

-
-

Overall, how much has Kolkata sequenced over months? -

-

While the absolute numbers are informative, a more useful metric is -the proportion of cases (cases sequenced over total cases) that are -getting sequenced. Here we look at the proportion of cases that have -been sequenced in India over the course of the pandemic:

-
-chennai_monthly_cases_tmp <- chennai_monthly_cases %>% select(MonthYear, value)
-chennai_monthly_cases_tmp$State <- "India"
-chennai_monthly_cases_tmp$type <- "Confirmed"
-
-chennai_monthly_cases_tmp <- chennai_monthly_cases_tmp %>% select(MonthYear, State, value, type)
-sequencing_proportion <- CombineSequencedCases(
-  cases_sequenced = chennai_seq_stats,
-  confirmed_long = chennai_monthly_cases_tmp
-)
-p3 <- BarPlot(sequencing_proportion, yaxis = "percent_sequenced_collected", ylabel = "%  deposited to GISAID", color = "yellowgreen", title = "Proportion of cases deposited to GISAID from Kolkata (India)", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-p3
-

-
-p1 / p2 / p3
-

-
-
-
-

Project weekly cases to variant prevalence data from GISAID -

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
-
-
-gisaid_dist_weekwise <- SummarizeVariantsWeekwise(gisaid_india %>% filter(custom_city == "Kolkata") %>% arrange(WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist <- confirmed_subset_dateweekwise_long %>%
-  filter(District %in% c("Kolkata")) %>%
-  rename(n = value) %>%
-  rename(WeekYearCollected = WeekYear) %>%
-  dplyr::select(-contains("type")) %>%
-  filter(WeekYearCollected >= min(gisaid_dist_weekwise$WeekYearCollected))
-confirmed_subset_dateweekwise_long_dist$State <- NULL
-
-voc_to_keep <- gisaid_dist_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_dist_weekwise <- gisaid_dist_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-india_cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_dist_weekwise, confirmed_subset_dateweekwise_long_dist)
-
## # weights:  52 (36 variable)
-## initial  value 19798.844090 
-## iter  10 value 11435.635166
-## iter  20 value 9057.108989
-## iter  30 value 8157.246773
-## iter  40 value 7975.159693
-## iter  50 value 7858.708901
-## iter  60 value 7668.444190
-## iter  70 value 7580.672625
-## iter  80 value 7528.451751
-## iter  90 value 7513.272444
-## iter 100 value 7474.103534
-## iter 110 value 7445.218172
-## iter 120 value 7436.097829
-## iter 130 value 7434.641300
-## iter 140 value 7427.176775
-## iter 150 value 7420.804551
-## iter 160 value 7420.661086
-## iter 170 value 7416.507209
-## iter 180 value 7414.348054
-## iter 190 value 7411.764260
-## iter 200 value 7407.259358
-## iter 210 value 7399.943830
-## iter 220 value 7385.067901
-## iter 230 value 7384.795201
-## iter 240 value 7383.401682
-## iter 250 value 7382.550291
-## iter 260 value 7382.092938
-## iter 270 value 7381.786055
-## iter 280 value 7381.431294
-## iter 290 value 7381.101862
-## final  value 7380.868859 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(india_cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Kolkata (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**", date_breaks = "28 days")
-gganimate::anim_save(filename = here::here("docs/articles/Kolkata_animated.gif"), animation = the_anim)
-

-

Look at cases after January, 2022 only:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2021 W35")) %>%
-  filter(District %in% c("Kolkata")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Kolkata") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 9583.359157 
-## iter  10 value 5728.384893
-## iter  20 value 4972.850542
-## iter  30 value 4897.274384
-## iter  40 value 4863.449275
-## iter  50 value 4846.053188
-## iter  60 value 4843.406679
-## iter  70 value 4842.740416
-## iter  80 value 4834.636500
-## iter  90 value 4833.226017
-## iter 100 value 4832.262214
-## iter 110 value 4831.508361
-## iter 120 value 4831.250002
-## iter 130 value 4831.025131
-## iter 140 value 4830.942138
-## iter 150 value 4830.802627
-## iter 160 value 4830.678303
-## iter 170 value 4830.004841
-## iter 180 value 4829.978702
-## iter 190 value 4829.841942
-## iter 200 value 4829.711621
-## iter 210 value 4829.608746
-## iter 220 value 4829.532697
-## final  value 4829.520347 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Kolkata (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Kolkata_animated_2021.gif"), animation = the_anim)
-

-

Look at cases in the last few weeks:

-
-confirmed_subset_dateweekwise_long <- GetIndiaConfirmedCasesWeeklyLong(level = "district")
-
## Rows: 661869 Columns: 8
-## ── Column specification ────────────────────────────────────────────────────────
-## Delimiter: ","
-## chr  (2): State, District
-## dbl  (5): Confirmed, Recovered, Deceased, Other, Tested
-## date (1): Date
-## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
-
-confirmed_subset_dateweekwise_long <- confirmed_subset_dateweekwise_long %>%
-  filter(WeekYear >= tsibble::yearweek("2022 W12")) %>%
-  filter(District %in% c("Kolkata")) %>%
-  group_by(WeekYear) %>%
-  summarise(n = sum(value)) %>%
-  arrange(WeekYear) %>%
-  rename(WeekYearCollected = WeekYear)
-
-gisaid_dist <- gisaid_india %>%
-  filter(MonthYearCollected > "Dec 2021") %>%
-  filter(custom_city == "Kolkata") %>%
-  arrange(WeekYearCollected)
-
-gisaid_weekwise <- SummarizeVariantsWeekwise(gisaid_dist)
-
-voc_to_keep <- gisaid_weekwise %>%
-  group_by(lineage_collapsed) %>%
-  summarise(n_sum = sum(n)) %>%
-  filter(n_sum > 1) %>%
-  pull(lineage_collapsed) %>%
-  unique()
-gisaid_weekwise <- gisaid_weekwise %>% filter(lineage_collapsed %in% voc_to_keep)
-
-cases_pred_prob_sel_long <- FitMultinomWeekly(gisaid_weekwise, confirmed_subset_dateweekwise_long)
-
## # weights:  40 (27 variable)
-## initial  value 9583.359157 
-## iter  10 value 5728.384893
-## iter  20 value 4972.850542
-## iter  30 value 4897.274384
-## iter  40 value 4863.449275
-## iter  50 value 4846.053188
-## iter  60 value 4843.406679
-## iter  70 value 4842.740416
-## iter  80 value 4834.636500
-## iter  90 value 4833.226017
-## iter 100 value 4832.262214
-## iter 110 value 4831.508361
-## iter 120 value 4831.250002
-## iter 130 value 4831.025131
-## iter 140 value 4830.942138
-## iter 150 value 4830.802627
-## iter 160 value 4830.678303
-## iter 170 value 4830.004841
-## iter 180 value 4829.978702
-## iter 190 value 4829.841942
-## iter 200 value 4829.711621
-## iter 210 value 4829.608746
-## iter 220 value 4829.532697
-## final  value 4829.520347 
-## converged
-
-the_anim <- PlotVariantPrevalenceAnimated(cases_pred_prob_sel_long, title = "Estimated cases (weekly average) in Kolkata (India) by variant", caption = "**Source: gisaid.org and covid19bharat.org**<br>")
-
## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-## `geom_line()`: Each group consists of only one observation.
-## ℹ Do you need to adjust the group aesthetic?
-
-gganimate::anim_save(filename = here::here("docs/articles/Kolkata_animated_2022.gif"), animation = the_anim)
-

-
-
-
- - - -
-

-

Developed by Saket Choudhary.

-
- -
-

-

Site built with pkgdown 2.0.7.

-
- -
-
- - - - - - - diff --git a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/css/crosstalk.min.css b/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/css/crosstalk.min.css deleted file mode 100644 index 6b453828..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/css/crosstalk.min.css +++ /dev/null @@ -1 +0,0 @@ -.container-fluid.crosstalk-bscols{margin-left:-30px;margin-right:-30px;white-space:normal}body>.container-fluid.crosstalk-bscols{margin-left:auto;margin-right:auto}.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:inline-block;padding-right:12px;vertical-align:top}@media only screen and (max-width: 480px){.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column{display:block;padding-right:inherit}}.crosstalk-input{margin-bottom:15px}.crosstalk-input .control-label{margin-bottom:0;vertical-align:middle}.crosstalk-input input[type="checkbox"]{margin:4px 0 0;margin-top:1px;line-height:normal}.crosstalk-input .checkbox{position:relative;display:block;margin-top:10px;margin-bottom:10px}.crosstalk-input .checkbox>label{padding-left:20px;margin-bottom:0;font-weight:400;cursor:pointer}.crosstalk-input .checkbox input[type="checkbox"],.crosstalk-input .checkbox-inline input[type="checkbox"]{position:absolute;margin-top:2px;margin-left:-20px}.crosstalk-input .checkbox+.checkbox{margin-top:-5px}.crosstalk-input .checkbox-inline{position:relative;display:inline-block;padding-left:20px;margin-bottom:0;font-weight:400;vertical-align:middle;cursor:pointer}.crosstalk-input .checkbox-inline+.checkbox-inline{margin-top:0;margin-left:10px} diff --git a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.js b/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.js deleted file mode 100644 index fd9eb53d..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.js +++ /dev/null @@ -1,1474 +0,0 @@ -(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require=="function"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error("Cannot find module '"+o+"'");throw f.code="MODULE_NOT_FOUND",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require=="function"&&require;for(var o=0;o b) { - return 1; - } -} - -/** - * @private - */ - -var FilterSet = function () { - function FilterSet() { - _classCallCheck(this, FilterSet); - - this.reset(); - } - - _createClass(FilterSet, [{ - key: "reset", - value: function reset() { - // Key: handle ID, Value: array of selected keys, or null - this._handles = {}; - // Key: key string, Value: count of handles that include it - this._keys = {}; - this._value = null; - this._activeHandles = 0; - } - }, { - key: "update", - value: function update(handleId, keys) { - if (keys !== null) { - keys = keys.slice(0); // clone before sorting - keys.sort(naturalComparator); - } - - var _diffSortedLists = (0, _util.diffSortedLists)(this._handles[handleId], keys), - added = _diffSortedLists.added, - removed = _diffSortedLists.removed; - - this._handles[handleId] = keys; - - for (var i = 0; i < added.length; i++) { - this._keys[added[i]] = (this._keys[added[i]] || 0) + 1; - } - for (var _i = 0; _i < removed.length; _i++) { - this._keys[removed[_i]]--; - } - - this._updateValue(keys); - } - - /** - * @param {string[]} keys Sorted array of strings that indicate - * a superset of possible keys. - * @private - */ - - }, { - key: "_updateValue", - value: function _updateValue() { - var keys = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : this._allKeys; - - var handleCount = Object.keys(this._handles).length; - if (handleCount === 0) { - this._value = null; - } else { - this._value = []; - for (var i = 0; i < keys.length; i++) { - var count = this._keys[keys[i]]; - if (count === handleCount) { - this._value.push(keys[i]); - } - } - } - } - }, { - key: "clear", - value: function clear(handleId) { - if (typeof this._handles[handleId] === "undefined") { - return; - } - - var keys = this._handles[handleId]; - if (!keys) { - keys = []; - } - - for (var i = 0; i < keys.length; i++) { - this._keys[keys[i]]--; - } - delete this._handles[handleId]; - - this._updateValue(); - } - }, { - key: "value", - get: function get() { - return this._value; - } - }, { - key: "_allKeys", - get: function get() { - var allKeys = Object.keys(this._keys); - allKeys.sort(naturalComparator); - return allKeys; - } - }]); - - return FilterSet; -}(); - -exports.default = FilterSet; - -},{"./util":11}],4:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.default = group; - -var _var2 = require("./var"); - -var _var3 = _interopRequireDefault(_var2); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -// Use a global so that multiple copies of crosstalk.js can be loaded and still -// have groups behave as singletons across all copies. -global.__crosstalk_groups = global.__crosstalk_groups || {}; -var groups = global.__crosstalk_groups; - -function group(groupName) { - if (groupName && typeof groupName === "string") { - if (!groups.hasOwnProperty(groupName)) { - groups[groupName] = new Group(groupName); - } - return groups[groupName]; - } else if ((typeof groupName === "undefined" ? "undefined" : _typeof(groupName)) === "object" && groupName._vars && groupName.var) { - // Appears to already be a group object - return groupName; - } else if (Array.isArray(groupName) && groupName.length == 1 && typeof groupName[0] === "string") { - return group(groupName[0]); - } else { - throw new Error("Invalid groupName argument"); - } -} - -var Group = function () { - function Group(name) { - _classCallCheck(this, Group); - - this.name = name; - this._vars = {}; - } - - _createClass(Group, [{ - key: "var", - value: function _var(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - if (!this._vars.hasOwnProperty(name)) this._vars[name] = new _var3.default(this, name); - return this._vars[name]; - } - }, { - key: "has", - value: function has(name) { - if (!name || typeof name !== "string") { - throw new Error("Invalid var name"); - } - - return this._vars.hasOwnProperty(name); - } - }]); - - return Group; -}(); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./var":12}],5:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _selection = require("./selection"); - -var _filter = require("./filter"); - -var _input = require("./input"); - -require("./input_selectize"); - -require("./input_checkboxgroup"); - -require("./input_slider"); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -var defaultGroup = (0, _group2.default)("default"); - -function var_(name) { - return defaultGroup.var(name); -} - -function has(name) { - return defaultGroup.has(name); -} - -if (global.Shiny) { - global.Shiny.addCustomMessageHandler("update-client-value", function (message) { - if (typeof message.group === "string") { - (0, _group2.default)(message.group).var(message.name).set(message.value); - } else { - var_(message.name).set(message.value); - } - }); -} - -var crosstalk = { - group: _group2.default, - var: var_, - has: has, - SelectionHandle: _selection.SelectionHandle, - FilterHandle: _filter.FilterHandle, - bind: _input.bind -}; - -/** - * @namespace crosstalk - */ -exports.default = crosstalk; - -global.crosstalk = crosstalk; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./group":4,"./input":6,"./input_checkboxgroup":7,"./input_selectize":8,"./input_slider":9,"./selection":10}],6:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.register = register; -exports.bind = bind; -var $ = global.jQuery; - -var bindings = {}; - -function register(reg) { - bindings[reg.className] = reg; - if (global.document && global.document.readyState !== "complete") { - $(function () { - bind(); - }); - } else if (global.document) { - setTimeout(bind, 100); - } -} - -function bind() { - Object.keys(bindings).forEach(function (className) { - var binding = bindings[className]; - $("." + binding.className).not(".crosstalk-input-bound").each(function (i, el) { - bindInstance(binding, el); - }); - }); -} - -// Escape jQuery identifier -function $escape(val) { - return val.replace(/([!"#$%&'()*+,./:;<=>?@[\\\]^`{|}~])/g, "\\$1"); -} - -function bindEl(el) { - var $el = $(el); - Object.keys(bindings).forEach(function (className) { - if ($el.hasClass(className) && !$el.hasClass("crosstalk-input-bound")) { - var binding = bindings[className]; - bindInstance(binding, el); - } - }); -} - -function bindInstance(binding, el) { - var jsonEl = $(el).find("script[type='application/json'][data-for='" + $escape(el.id) + "']"); - var data = JSON.parse(jsonEl[0].innerText); - - var instance = binding.factory(el, data); - $(el).data("crosstalk-instance", instance); - $(el).addClass("crosstalk-input-bound"); -} - -if (global.Shiny) { - var inputBinding = new global.Shiny.InputBinding(); - var _$ = global.jQuery; - _$.extend(inputBinding, { - find: function find(scope) { - return _$(scope).find(".crosstalk-input"); - }, - initialize: function initialize(el) { - if (!_$(el).hasClass("crosstalk-input-bound")) { - bindEl(el); - } - }, - getId: function getId(el) { - return el.id; - }, - getValue: function getValue(el) {}, - setValue: function setValue(el, value) {}, - receiveMessage: function receiveMessage(el, data) {}, - subscribe: function subscribe(el, callback) { - _$(el).data("crosstalk-instance").resume(); - }, - unsubscribe: function unsubscribe(el) { - _$(el).data("crosstalk-instance").suspend(); - } - }); - global.Shiny.inputBindings.register(inputBinding, "crosstalk.inputBinding"); -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{}],7:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-checkboxgroup", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - var $el = $(el); - $el.on("change", "input[type='checkbox']", function () { - var checked = $el.find("input[type='checkbox']:checked"); - if (checked.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - checked.each(function () { - data.map[this.value].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],8:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; - -input.register({ - className: "crosstalk-input-select", - - factory: function factory(el, data) { - /* - * items: {value: [...], label: [...]} - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - - var first = [{ value: "", label: "(All)" }]; - var items = util.dataframeToD3(data.items); - var opts = { - options: first.concat(items), - valueField: "value", - labelField: "label", - searchField: "label" - }; - - var select = $(el).find("select")[0]; - - var selectize = $(select).selectize(opts)[0].selectize; - - var ctHandle = new _filter.FilterHandle(data.group); - - var lastKnownKeys = void 0; - selectize.on("change", function () { - if (selectize.items.length === 0) { - lastKnownKeys = null; - ctHandle.clear(); - } else { - var keys = {}; - selectize.items.forEach(function (group) { - data.map[group].forEach(function (key) { - keys[key] = true; - }); - }); - var keyArray = Object.keys(keys); - keyArray.sort(); - lastKnownKeys = keyArray; - ctHandle.set(keyArray); - } - }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6,"./util":11}],9:[function(require,module,exports){ -(function (global){ -"use strict"; - -var _slicedToArray = function () { function sliceIterator(arr, i) { var _arr = []; var _n = true; var _d = false; var _e = undefined; try { for (var _i = arr[Symbol.iterator](), _s; !(_n = (_s = _i.next()).done); _n = true) { _arr.push(_s.value); if (i && _arr.length === i) break; } } catch (err) { _d = true; _e = err; } finally { try { if (!_n && _i["return"]) _i["return"](); } finally { if (_d) throw _e; } } return _arr; } return function (arr, i) { if (Array.isArray(arr)) { return arr; } else if (Symbol.iterator in Object(arr)) { return sliceIterator(arr, i); } else { throw new TypeError("Invalid attempt to destructure non-iterable instance"); } }; }(); - -var _input = require("./input"); - -var input = _interopRequireWildcard(_input); - -var _filter = require("./filter"); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -var $ = global.jQuery; -var strftime = global.strftime; - -input.register({ - className: "crosstalk-input-slider", - - factory: function factory(el, data) { - /* - * map: {"groupA": ["keyA", "keyB", ...], ...} - * group: "ct-groupname" - */ - var ctHandle = new _filter.FilterHandle(data.group); - - var opts = {}; - var $el = $(el).find("input"); - var dataType = $el.data("data-type"); - var timeFormat = $el.data("time-format"); - var round = $el.data("round"); - var timeFormatter = void 0; - - // Set up formatting functions - if (dataType === "date") { - timeFormatter = strftime.utc(); - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "datetime") { - var timezone = $el.data("timezone"); - if (timezone) timeFormatter = strftime.timezone(timezone);else timeFormatter = strftime; - - opts.prettify = function (num) { - return timeFormatter(timeFormat, new Date(num)); - }; - } else if (dataType === "number") { - if (typeof round !== "undefined") opts.prettify = function (num) { - var factor = Math.pow(10, round); - return Math.round(num * factor) / factor; - }; - } - - $el.ionRangeSlider(opts); - - function getValue() { - var result = $el.data("ionRangeSlider").result; - - // Function for converting numeric value from slider to appropriate type. - var convert = void 0; - var dataType = $el.data("data-type"); - if (dataType === "date") { - convert = function convert(val) { - return formatDateUTC(new Date(+val)); - }; - } else if (dataType === "datetime") { - convert = function convert(val) { - // Convert ms to s - return +val / 1000; - }; - } else { - convert = function convert(val) { - return +val; - }; - } - - if ($el.data("ionRangeSlider").options.type === "double") { - return [convert(result.from), convert(result.to)]; - } else { - return convert(result.from); - } - } - - var lastKnownKeys = null; - - $el.on("change.crosstalkSliderInput", function (event) { - if (!$el.data("updating") && !$el.data("animating")) { - var _getValue = getValue(), - _getValue2 = _slicedToArray(_getValue, 2), - from = _getValue2[0], - to = _getValue2[1]; - - var keys = []; - for (var i = 0; i < data.values.length; i++) { - var val = data.values[i]; - if (val >= from && val <= to) { - keys.push(data.keys[i]); - } - } - keys.sort(); - ctHandle.set(keys); - lastKnownKeys = keys; - } - }); - - // let $el = $(el); - // $el.on("change", "input[type="checkbox"]", function() { - // let checked = $el.find("input[type="checkbox"]:checked"); - // if (checked.length === 0) { - // ctHandle.clear(); - // } else { - // let keys = {}; - // checked.each(function() { - // data.map[this.value].forEach(function(key) { - // keys[key] = true; - // }); - // }); - // let keyArray = Object.keys(keys); - // keyArray.sort(); - // ctHandle.set(keyArray); - // } - // }); - - return { - suspend: function suspend() { - ctHandle.clear(); - }, - resume: function resume() { - if (lastKnownKeys) ctHandle.set(lastKnownKeys); - } - }; - } -}); - -// Convert a number to a string with leading zeros -function padZeros(n, digits) { - var str = n.toString(); - while (str.length < digits) { - str = "0" + str; - }return str; -} - -// Given a Date object, return a string in yyyy-mm-dd format, using the -// UTC date. This may be a day off from the date in the local time zone. -function formatDateUTC(date) { - if (date instanceof Date) { - return date.getUTCFullYear() + "-" + padZeros(date.getUTCMonth() + 1, 2) + "-" + padZeros(date.getUTCDate(), 2); - } else { - return null; - } -} - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./filter":2,"./input":6}],10:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); -exports.SelectionHandle = undefined; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -var _group = require("./group"); - -var _group2 = _interopRequireDefault(_group); - -var _util = require("./util"); - -var util = _interopRequireWildcard(_util); - -function _interopRequireWildcard(obj) { if (obj && obj.__esModule) { return obj; } else { var newObj = {}; if (obj != null) { for (var key in obj) { if (Object.prototype.hasOwnProperty.call(obj, key)) newObj[key] = obj[key]; } } newObj.default = obj; return newObj; } } - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -/** - * Use this class to read and write (and listen for changes to) the selection - * for a Crosstalk group. This is intended to be used for linked brushing. - * - * If two (or more) `SelectionHandle` instances in the same webpage share the - * same group name, they will share the same state. Setting the selection using - * one `SelectionHandle` instance will result in the `value` property instantly - * changing across the others, and `"change"` event listeners on all instances - * (including the one that initiated the sending) will fire. - * - * @param {string} [group] - The name of the Crosstalk group, or if none, - * null or undefined (or any other falsy value). This can be changed later - * via the [SelectionHandle#setGroup](#setGroup) method. - * @param {Object} [extraInfo] - An object whose properties will be copied to - * the event object whenever an event is emitted. - */ -var SelectionHandle = exports.SelectionHandle = function () { - function SelectionHandle() { - var group = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : null; - var extraInfo = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : null; - - _classCallCheck(this, SelectionHandle); - - this._eventRelay = new _events2.default(); - this._emitter = new util.SubscriptionTracker(this._eventRelay); - - // Name of the group we're currently tracking, if any. Can change over time. - this._group = null; - // The Var we're currently tracking, if any. Can change over time. - this._var = null; - // The event handler subscription we currently have on var.on("change"). - this._varOnChangeSub = null; - - this._extraInfo = util.extend({ sender: this }, extraInfo); - - this.setGroup(group); - } - - /** - * Changes the Crosstalk group membership of this SelectionHandle. The group - * being switched away from (if any) will not have its selection value - * modified as a result of calling `setGroup`, even if this handle was the - * most recent handle to set the selection of the group. - * - * The group being switched to (if any) will also not have its selection value - * modified as a result of calling `setGroup`. If you want to set the - * selection value of the new group, call `set` explicitly. - * - * @param {string} group - The name of the Crosstalk group, or null (or - * undefined) to clear the group. - */ - - - _createClass(SelectionHandle, [{ - key: "setGroup", - value: function setGroup(group) { - var _this = this; - - // If group is unchanged, do nothing - if (this._group === group) return; - // Treat null, undefined, and other falsy values the same - if (!this._group && !group) return; - - if (this._var) { - this._var.off("change", this._varOnChangeSub); - this._var = null; - this._varOnChangeSub = null; - } - - this._group = group; - - if (group) { - this._var = (0, _group2.default)(group).var("selection"); - var sub = this._var.on("change", function (e) { - _this._eventRelay.trigger("change", e, _this); - }); - this._varOnChangeSub = sub; - } - } - - /** - * Retrieves the current selection for the group represented by this - * `SelectionHandle`. - * - * - If no selection is active, then this value will be falsy. - * - If a selection is active, but no data points are selected, then this - * value will be an empty array. - * - If a selection is active, and data points are selected, then the keys - * of the selected data points will be present in the array. - */ - - }, { - key: "_mergeExtraInfo", - - - /** - * Combines the given `extraInfo` (if any) with the handle's default - * `_extraInfo` (if any). - * @private - */ - value: function _mergeExtraInfo(extraInfo) { - // Important incidental effect: shallow clone is returned - return util.extend({}, this._extraInfo ? this._extraInfo : null, extraInfo ? extraInfo : null); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see - * {@link SelectionHandle#value}). - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any options that were - * passed into the `SelectionHandle` constructor). - */ - - }, { - key: "set", - value: function set(selectedKeys, extraInfo) { - if (this._var) this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo)); - } - - /** - * Overwrites the current selection for the group, and raises the `"change"` - * event among all of the group's '`SelectionHandle` instances (including - * this one). - * - * @fires SelectionHandle#change - * @param {Object} [extraInfo] - Extra properties to be included on the event - * object that's passed to listeners (in addition to any that were passed - * into the `SelectionHandle` constructor). - */ - - }, { - key: "clear", - value: function clear(extraInfo) { - if (this._var) this.set(void 0, this._mergeExtraInfo(extraInfo)); - } - - /** - * Subscribes to events on this `SelectionHandle`. - * - * @param {string} eventType - Indicates the type of events to listen to. - * Currently, only `"change"` is supported. - * @param {SelectionHandle~listener} listener - The callback function that - * will be invoked when the event occurs. - * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel - * this subscription. - */ - - }, { - key: "on", - value: function on(eventType, listener) { - return this._emitter.on(eventType, listener); - } - - /** - * Cancels event subscriptions created by {@link SelectionHandle#on}. - * - * @param {string} eventType - The type of event to unsubscribe. - * @param {string|SelectionHandle~listener} listener - Either the callback - * function previously passed into {@link SelectionHandle#on}, or the - * string that was returned from {@link SelectionHandle#on}. - */ - - }, { - key: "off", - value: function off(eventType, listener) { - return this._emitter.off(eventType, listener); - } - - /** - * Shuts down the `SelectionHandle` object. - * - * Removes all event listeners that were added through this handle. - */ - - }, { - key: "close", - value: function close() { - this._emitter.removeAllListeners(); - this.setGroup(null); - } - }, { - key: "value", - get: function get() { - return this._var ? this._var.get() : null; - } - }]); - - return SelectionHandle; -}(); - -/** - * @callback SelectionHandle~listener - * @param {Object} event - An object containing details of the event. For - * `"change"` events, this includes the properties `value` (the new - * value of the selection, or `undefined` if no selection is active), - * `oldValue` (the previous value of the selection), and `sender` (the - * `SelectionHandle` instance that made the change). - */ - -/** - * @event SelectionHandle#change - * @type {object} - * @property {object} value - The new value of the selection, or `undefined` - * if no selection is active. - * @property {object} oldValue - The previous value of the selection. - * @property {SelectionHandle} sender - The `SelectionHandle` instance that - * changed the value. - */ - -},{"./events":1,"./group":4,"./util":11}],11:[function(require,module,exports){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -exports.extend = extend; -exports.checkSorted = checkSorted; -exports.diffSortedLists = diffSortedLists; -exports.dataframeToD3 = dataframeToD3; - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -function extend(target) { - for (var _len = arguments.length, sources = Array(_len > 1 ? _len - 1 : 0), _key = 1; _key < _len; _key++) { - sources[_key - 1] = arguments[_key]; - } - - for (var i = 0; i < sources.length; i++) { - var src = sources[i]; - if (typeof src === "undefined" || src === null) continue; - - for (var key in src) { - if (src.hasOwnProperty(key)) { - target[key] = src[key]; - } - } - } - return target; -} - -function checkSorted(list) { - for (var i = 1; i < list.length; i++) { - if (list[i] <= list[i - 1]) { - throw new Error("List is not sorted or contains duplicate"); - } - } -} - -function diffSortedLists(a, b) { - var i_a = 0; - var i_b = 0; - - if (!a) a = []; - if (!b) b = []; - - var a_only = []; - var b_only = []; - - checkSorted(a); - checkSorted(b); - - while (i_a < a.length && i_b < b.length) { - if (a[i_a] === b[i_b]) { - i_a++; - i_b++; - } else if (a[i_a] < b[i_b]) { - a_only.push(a[i_a++]); - } else { - b_only.push(b[i_b++]); - } - } - - if (i_a < a.length) a_only = a_only.concat(a.slice(i_a)); - if (i_b < b.length) b_only = b_only.concat(b.slice(i_b)); - return { - removed: a_only, - added: b_only - }; -} - -// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... } -// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ] -function dataframeToD3(df) { - var names = []; - var length = void 0; - for (var name in df) { - if (df.hasOwnProperty(name)) names.push(name); - if (_typeof(df[name]) !== "object" || typeof df[name].length === "undefined") { - throw new Error("All fields must be arrays"); - } else if (typeof length !== "undefined" && length !== df[name].length) { - throw new Error("All fields must be arrays of the same length"); - } - length = df[name].length; - } - var results = []; - var item = void 0; - for (var row = 0; row < length; row++) { - item = {}; - for (var col = 0; col < names.length; col++) { - item[names[col]] = df[names[col]][row]; - } - results.push(item); - } - return results; -} - -/** - * Keeps track of all event listener additions/removals and lets all active - * listeners be removed with a single operation. - * - * @private - */ - -var SubscriptionTracker = exports.SubscriptionTracker = function () { - function SubscriptionTracker(emitter) { - _classCallCheck(this, SubscriptionTracker); - - this._emitter = emitter; - this._subs = {}; - } - - _createClass(SubscriptionTracker, [{ - key: "on", - value: function on(eventType, listener) { - var sub = this._emitter.on(eventType, listener); - this._subs[sub] = eventType; - return sub; - } - }, { - key: "off", - value: function off(eventType, listener) { - var sub = this._emitter.off(eventType, listener); - if (sub) { - delete this._subs[sub]; - } - return sub; - } - }, { - key: "removeAllListeners", - value: function removeAllListeners() { - var _this = this; - - var current_subs = this._subs; - this._subs = {}; - Object.keys(current_subs).forEach(function (sub) { - _this._emitter.off(current_subs[sub], sub); - }); - } - }]); - - return SubscriptionTracker; -}(); - -},{}],12:[function(require,module,exports){ -(function (global){ -"use strict"; - -Object.defineProperty(exports, "__esModule", { - value: true -}); - -var _typeof = typeof Symbol === "function" && typeof Symbol.iterator === "symbol" ? function (obj) { return typeof obj; } : function (obj) { return obj && typeof Symbol === "function" && obj.constructor === Symbol && obj !== Symbol.prototype ? "symbol" : typeof obj; }; - -var _createClass = function () { function defineProperties(target, props) { for (var i = 0; i < props.length; i++) { var descriptor = props[i]; descriptor.enumerable = descriptor.enumerable || false; descriptor.configurable = true; if ("value" in descriptor) descriptor.writable = true; Object.defineProperty(target, descriptor.key, descriptor); } } return function (Constructor, protoProps, staticProps) { if (protoProps) defineProperties(Constructor.prototype, protoProps); if (staticProps) defineProperties(Constructor, staticProps); return Constructor; }; }(); - -var _events = require("./events"); - -var _events2 = _interopRequireDefault(_events); - -function _interopRequireDefault(obj) { return obj && obj.__esModule ? obj : { default: obj }; } - -function _classCallCheck(instance, Constructor) { if (!(instance instanceof Constructor)) { throw new TypeError("Cannot call a class as a function"); } } - -var Var = function () { - function Var(group, name, /*optional*/value) { - _classCallCheck(this, Var); - - this._group = group; - this._name = name; - this._value = value; - this._events = new _events2.default(); - } - - _createClass(Var, [{ - key: "get", - value: function get() { - return this._value; - } - }, { - key: "set", - value: function set(value, /*optional*/event) { - if (this._value === value) { - // Do nothing; the value hasn't changed - return; - } - var oldValue = this._value; - this._value = value; - // Alert JavaScript listeners that the value has changed - var evt = {}; - if (event && (typeof event === "undefined" ? "undefined" : _typeof(event)) === "object") { - for (var k in event) { - if (event.hasOwnProperty(k)) evt[k] = event[k]; - } - } - evt.oldValue = oldValue; - evt.value = value; - this._events.trigger("change", evt, this); - - // TODO: Make this extensible, to let arbitrary back-ends know that - // something has changed - if (global.Shiny && global.Shiny.onInputChange) { - global.Shiny.onInputChange(".clientValue-" + (this._group.name !== null ? this._group.name + "-" : "") + this._name, typeof value === "undefined" ? null : value); - } - } - }, { - key: "on", - value: function on(eventType, listener) { - return this._events.on(eventType, listener); - } - }, { - key: "off", - value: function off(eventType, listener) { - return this._events.off(eventType, listener); - } - }]); - - return Var; -}(); - -exports.default = Var; - -}).call(this,typeof global !== "undefined" ? global : typeof self !== "undefined" ? self : typeof window !== "undefined" ? window : {}) - -},{"./events":1}]},{},[5]) -//# sourceMappingURL=crosstalk.js.map diff --git a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.js.map b/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.js.map deleted file mode 100644 index cff94f08..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.js.map +++ /dev/null @@ -1,37 +0,0 @@ -{ - "version": 3, - "sources": [ - "node_modules/browser-pack/_prelude.js", - "javascript/src/events.js", - "javascript/src/filter.js", - "javascript/src/filterset.js", - "javascript/src/group.js", - "javascript/src/index.js", - "javascript/src/input.js", - "javascript/src/input_checkboxgroup.js", - "javascript/src/input_selectize.js", - "javascript/src/input_slider.js", - "javascript/src/selection.js", - "javascript/src/util.js", - "javascript/src/var.js" - ], - "names": [], - "mappings": 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- "file": "generated.js", - "sourceRoot": "", - "sourcesContent": [ - "(function(){function e(t,n,r){function s(o,u){if(!n[o]){if(!t[o]){var a=typeof require==\"function\"&&require;if(!u&&a)return a(o,!0);if(i)return i(o,!0);var f=new Error(\"Cannot find module '\"+o+\"'\");throw f.code=\"MODULE_NOT_FOUND\",f}var l=n[o]={exports:{}};t[o][0].call(l.exports,function(e){var n=t[o][1][e];return s(n?n:e)},l,l.exports,e,t,n,r)}return n[o].exports}var i=typeof require==\"function\"&&require;for(var o=0;o {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n", - "import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n", - "import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n", - "import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n", - "let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n", - "import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n", - "import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n", - "export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n", - "import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n" - ] -} \ No newline at end of file diff --git a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.min.js b/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.min.js deleted file mode 100644 index b7ec0ac9..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/js/crosstalk.min.js +++ /dev/null @@ -1,2 +0,0 @@ -!function o(u,a,l){function s(n,e){if(!a[n]){if(!u[n]){var t="function"==typeof require&&require;if(!e&&t)return t(n,!0);if(f)return f(n,!0);var r=new Error("Cannot find module '"+n+"'");throw r.code="MODULE_NOT_FOUND",r}var i=a[n]={exports:{}};u[n][0].call(i.exports,function(e){var t=u[n][1][e];return s(t||e)},i,i.exports,o,u,a,l)}return a[n].exports}for(var f="function"==typeof require&&require,e=0;e?@[\\\]^`{|}~])/g,"\\$1")+"']"),r=JSON.parse(n[0].innerText),i=e.factory(t,r);o(t).data("crosstalk-instance",i),o(t).addClass("crosstalk-input-bound")}if(t.Shiny){var e=new t.Shiny.InputBinding,u=t.jQuery;u.extend(e,{find:function(e){return u(e).find(".crosstalk-input")},initialize:function(e){var t,n;u(e).hasClass("crosstalk-input-bound")||(n=o(t=e),Object.keys(r).forEach(function(e){n.hasClass(e)&&!n.hasClass("crosstalk-input-bound")&&i(r[e],t)}))},getId:function(e){return e.id},getValue:function(e){},setValue:function(e,t){},receiveMessage:function(e,t){},subscribe:function(e,t){u(e).data("crosstalk-instance").resume()},unsubscribe:function(e){u(e).data("crosstalk-instance").suspend()}}),t.Shiny.inputBindings.register(e,"crosstalk.inputBinding")}}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{}],7:[function(r,e,t){(function(e){"use strict";var t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(r("./input")),n=r("./filter");var a=e.jQuery;t.register({className:"crosstalk-input-checkboxgroup",factory:function(e,r){var i=new n.FilterHandle(r.group),o=void 0,u=a(e);return u.on("change","input[type='checkbox']",function(){var e=u.find("input[type='checkbox']:checked");if(0===e.length)o=null,i.clear();else{var t={};e.each(function(){r.map[this.value].forEach(function(e){t[e]=!0})});var n=Object.keys(t);n.sort(),o=n,i.set(n)}}),{suspend:function(){i.clear()},resume:function(){o&&i.set(o)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6}],8:[function(r,e,t){(function(e){"use strict";var t=n(r("./input")),l=n(r("./util")),s=r("./filter");function n(e){if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}var f=e.jQuery;t.register({className:"crosstalk-input-select",factory:function(e,n){var t=l.dataframeToD3(n.items),r={options:[{value:"",label:"(All)"}].concat(t),valueField:"value",labelField:"label",searchField:"label"},i=f(e).find("select")[0],o=f(i).selectize(r)[0].selectize,u=new s.FilterHandle(n.group),a=void 0;return o.on("change",function(){if(0===o.items.length)a=null,u.clear();else{var t={};o.items.forEach(function(e){n.map[e].forEach(function(e){t[e]=!0})});var e=Object.keys(t);e.sort(),a=e,u.set(e)}}),{suspend:function(){u.clear()},resume:function(){a&&u.set(a)}}}})}).call(this,"undefined"!=typeof global?global:"undefined"!=typeof self?self:"undefined"!=typeof window?window:{})},{"./filter":2,"./input":6,"./util":11}],9:[function(n,e,t){(function(e){"use strict";var d=function(e,t){if(Array.isArray(e))return e;if(Symbol.iterator in Object(e))return function(e,t){var n=[],r=!0,i=!1,o=void 0;try{for(var u,a=e[Symbol.iterator]();!(r=(u=a.next()).done)&&(n.push(u.value),!t||n.length!==t);r=!0);}catch(e){i=!0,o=e}finally{try{!r&&a.return&&a.return()}finally{if(i)throw o}}return n}(e,t);throw new TypeError("Invalid attempt to destructure non-iterable instance")},t=function(e){{if(e&&e.__esModule)return e;var t={};if(null!=e)for(var n in e)Object.prototype.hasOwnProperty.call(e,n)&&(t[n]=e[n]);return t.default=e,t}}(n("./input")),a=n("./filter");var v=e.jQuery,p=e.strftime;function y(e,t){for(var n=e.toString();n.length {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Combine the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Close the handle. This clears this handle's contribution to the filter set,\n * and unsubscribes all event listeners.\n */\n close() {\n this._emitter.removeAllListeners();\n this.clear();\n this.setGroup(null);\n }\n\n /**\n * Clear this handle's contribution to the filter set.\n *\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n clear(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.clear(this._id);\n this._onChange(extraInfo);\n }\n\n /**\n * Set this handle's contribution to the filter set. This array should consist\n * of the keys of the rows that _should_ be displayed; any keys that are not\n * present in the array will be considered _filtered out_. Note that multiple\n * `FilterHandle` instances in the group may each contribute an array of keys,\n * and only those keys that appear in _all_ of the arrays make it through the\n * filter.\n *\n * @param {string[]} keys - Empty array, or array of keys. To clear the\n * filter, don't pass an empty array; instead, use the\n * {@link FilterHandle#clear} method.\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `FilterHandle` constructor).\n * \n * @fires FilterHandle#change\n */\n set(keys, extraInfo) {\n if (!this._filterSet)\n return;\n this._filterSet.update(this._id, keys);\n this._onChange(extraInfo);\n }\n\n /**\n * @return {string[]|null} - Either: 1) an array of keys that made it through\n * all of the `FilterHandle` instances, or, 2) `null`, which means no filter\n * is being applied (all data should be displayed).\n */\n get filteredKeys() {\n return this._filterSet ? this._filterSet.value : null;\n }\n\n /**\n * Subscribe to events on this `FilterHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {FilterHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link FilterHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancel event subscriptions created by {@link FilterHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|FilterHandle~listener} listener - Either the callback\n * function previously passed into {@link FilterHandle#on}, or the\n * string that was returned from {@link FilterHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n _onChange(extraInfo) {\n if (!this._filterSet)\n return;\n this._filterVar.set(this._filterSet.value, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * @callback FilterHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the filter set, or `null` if no filter set is active),\n * `oldValue` (the previous value of the filter set), and `sender` (the\n * `FilterHandle` instance that made the change).\n */\n\n}\n\n/**\n * @event FilterHandle#change\n * @type {object}\n * @property {object} value - The new value of the filter set, or `null`\n * if no filter set is active.\n * @property {object} oldValue - The previous value of the filter set.\n * @property {FilterHandle} sender - The `FilterHandle` instance that\n * changed the value.\n */\n","import { diffSortedLists } from \"./util\";\n\nfunction naturalComparator(a, b) {\n if (a === b) {\n return 0;\n } else if (a < b) {\n return -1;\n } else if (a > b) {\n return 1;\n }\n}\n\n/**\n * @private\n */\nexport default class FilterSet {\n constructor() {\n this.reset();\n }\n\n reset() {\n // Key: handle ID, Value: array of selected keys, or null\n this._handles = {};\n // Key: key string, Value: count of handles that include it\n this._keys = {};\n this._value = null;\n this._activeHandles = 0;\n }\n\n get value() {\n return this._value;\n }\n\n update(handleId, keys) {\n if (keys !== null) {\n keys = keys.slice(0); // clone before sorting\n keys.sort(naturalComparator);\n }\n\n let {added, removed} = diffSortedLists(this._handles[handleId], keys);\n this._handles[handleId] = keys;\n\n for (let i = 0; i < added.length; i++) {\n this._keys[added[i]] = (this._keys[added[i]] || 0) + 1;\n }\n for (let i = 0; i < removed.length; i++) {\n this._keys[removed[i]]--;\n }\n\n this._updateValue(keys);\n }\n\n /**\n * @param {string[]} keys Sorted array of strings that indicate\n * a superset of possible keys.\n * @private\n */\n _updateValue(keys = this._allKeys) {\n let handleCount = Object.keys(this._handles).length;\n if (handleCount === 0) {\n this._value = null;\n } else {\n this._value = [];\n for (let i = 0; i < keys.length; i++) {\n let count = this._keys[keys[i]];\n if (count === handleCount) {\n this._value.push(keys[i]);\n }\n }\n }\n }\n\n clear(handleId) {\n if (typeof(this._handles[handleId]) === \"undefined\") {\n return;\n }\n\n let keys = this._handles[handleId];\n if (!keys) {\n keys = [];\n }\n\n for (let i = 0; i < keys.length; i++) {\n this._keys[keys[i]]--;\n }\n delete this._handles[handleId];\n\n this._updateValue();\n }\n\n get _allKeys() {\n let allKeys = Object.keys(this._keys);\n allKeys.sort(naturalComparator);\n return allKeys;\n }\n}\n","import Var from \"./var\";\n\n// Use a global so that multiple copies of crosstalk.js can be loaded and still\n// have groups behave as singletons across all copies.\nglobal.__crosstalk_groups = global.__crosstalk_groups || {};\nlet groups = global.__crosstalk_groups;\n\nexport default function group(groupName) {\n if (groupName && typeof(groupName) === \"string\") {\n if (!groups.hasOwnProperty(groupName)) {\n groups[groupName] = new Group(groupName);\n }\n return groups[groupName];\n } else if (typeof(groupName) === \"object\" && groupName._vars && groupName.var) {\n // Appears to already be a group object\n return groupName;\n } else if (Array.isArray(groupName) &&\n groupName.length == 1 &&\n typeof(groupName[0]) === \"string\") {\n return group(groupName[0]);\n } else {\n throw new Error(\"Invalid groupName argument\");\n }\n}\n\nclass Group {\n constructor(name) {\n this.name = name;\n this._vars = {};\n }\n\n var(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n if (!this._vars.hasOwnProperty(name))\n this._vars[name] = new Var(this, name);\n return this._vars[name];\n }\n\n has(name) {\n if (!name || typeof(name) !== \"string\") {\n throw new Error(\"Invalid var name\");\n }\n\n return this._vars.hasOwnProperty(name);\n }\n}\n","import group from \"./group\";\nimport { SelectionHandle } from \"./selection\";\nimport { FilterHandle } from \"./filter\";\nimport { bind } from \"./input\";\nimport \"./input_selectize\";\nimport \"./input_checkboxgroup\";\nimport \"./input_slider\";\n\nconst defaultGroup = group(\"default\");\n\nfunction var_(name) {\n return defaultGroup.var(name);\n}\n\nfunction has(name) {\n return defaultGroup.has(name);\n}\n\nif (global.Shiny) {\n global.Shiny.addCustomMessageHandler(\"update-client-value\", function(message) {\n if (typeof(message.group) === \"string\") {\n group(message.group).var(message.name).set(message.value);\n } else {\n var_(message.name).set(message.value);\n }\n });\n}\n\nconst crosstalk = {\n group: group,\n var: var_,\n has: has,\n SelectionHandle: SelectionHandle,\n FilterHandle: FilterHandle,\n bind: bind\n};\n\n/**\n * @namespace crosstalk\n */\nexport default crosstalk;\nglobal.crosstalk = crosstalk;\n","let $ = global.jQuery;\n\nlet bindings = {};\n\nexport function register(reg) {\n bindings[reg.className] = reg;\n if (global.document && global.document.readyState !== \"complete\") {\n $(() => {\n bind();\n });\n } else if (global.document) {\n setTimeout(bind, 100);\n }\n}\n\nexport function bind() {\n Object.keys(bindings).forEach(function(className) {\n let binding = bindings[className];\n $(\".\" + binding.className).not(\".crosstalk-input-bound\").each(function(i, el) {\n bindInstance(binding, el);\n });\n });\n}\n\n// Escape jQuery identifier\nfunction $escape(val) {\n return val.replace(/([!\"#$%&'()*+,./:;<=>?@[\\\\\\]^`{|}~])/g, \"\\\\$1\");\n}\n\nfunction bindEl(el) {\n let $el = $(el);\n Object.keys(bindings).forEach(function(className) {\n if ($el.hasClass(className) && !$el.hasClass(\"crosstalk-input-bound\")) {\n let binding = bindings[className];\n bindInstance(binding, el);\n }\n });\n}\n\nfunction bindInstance(binding, el) {\n let jsonEl = $(el).find(\"script[type='application/json'][data-for='\" + $escape(el.id) + \"']\");\n let data = JSON.parse(jsonEl[0].innerText);\n\n let instance = binding.factory(el, data);\n $(el).data(\"crosstalk-instance\", instance);\n $(el).addClass(\"crosstalk-input-bound\");\n}\n\nif (global.Shiny) {\n let inputBinding = new global.Shiny.InputBinding();\n let $ = global.jQuery;\n $.extend(inputBinding, {\n find: function(scope) {\n return $(scope).find(\".crosstalk-input\");\n },\n initialize: function(el) {\n if (!$(el).hasClass(\"crosstalk-input-bound\")) {\n bindEl(el);\n }\n },\n getId: function(el) {\n return el.id;\n },\n getValue: function(el) {\n\n },\n setValue: function(el, value) {\n\n },\n receiveMessage: function(el, data) {\n\n },\n subscribe: function(el, callback) {\n $(el).data(\"crosstalk-instance\").resume();\n },\n unsubscribe: function(el) {\n $(el).data(\"crosstalk-instance\").suspend();\n }\n });\n global.Shiny.inputBindings.register(inputBinding, \"crosstalk.inputBinding\");\n}\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-checkboxgroup\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n let $el = $(el);\n $el.on(\"change\", \"input[type='checkbox']\", function() {\n let checked = $el.find(\"input[type='checkbox']:checked\");\n if (checked.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n checked.each(function() {\n data.map[this.value].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport * as util from \"./util\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\n\ninput.register({\n className: \"crosstalk-input-select\",\n\n factory: function(el, data) {\n /*\n * items: {value: [...], label: [...]}\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n\n let first = [{value: \"\", label: \"(All)\"}];\n let items = util.dataframeToD3(data.items);\n let opts = {\n options: first.concat(items),\n valueField: \"value\",\n labelField: \"label\",\n searchField: \"label\"\n };\n\n let select = $(el).find(\"select\")[0];\n\n let selectize = $(select).selectize(opts)[0].selectize;\n\n let ctHandle = new FilterHandle(data.group);\n\n let lastKnownKeys;\n selectize.on(\"change\", function() {\n if (selectize.items.length === 0) {\n lastKnownKeys = null;\n ctHandle.clear();\n } else {\n let keys = {};\n selectize.items.forEach(function(group) {\n data.map[group].forEach(function(key) {\n keys[key] = true;\n });\n });\n let keyArray = Object.keys(keys);\n keyArray.sort();\n lastKnownKeys = keyArray;\n ctHandle.set(keyArray);\n }\n });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n","import * as input from \"./input\";\nimport { FilterHandle } from \"./filter\";\n\nlet $ = global.jQuery;\nlet strftime = global.strftime;\n\ninput.register({\n className: \"crosstalk-input-slider\",\n\n factory: function(el, data) {\n /*\n * map: {\"groupA\": [\"keyA\", \"keyB\", ...], ...}\n * group: \"ct-groupname\"\n */\n let ctHandle = new FilterHandle(data.group);\n\n let opts = {};\n let $el = $(el).find(\"input\");\n let dataType = $el.data(\"data-type\");\n let timeFormat = $el.data(\"time-format\");\n let round = $el.data(\"round\");\n let timeFormatter;\n\n // Set up formatting functions\n if (dataType === \"date\") {\n timeFormatter = strftime.utc();\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n\n } else if (dataType === \"datetime\") {\n let timezone = $el.data(\"timezone\");\n if (timezone)\n timeFormatter = strftime.timezone(timezone);\n else\n timeFormatter = strftime;\n\n opts.prettify = function(num) {\n return timeFormatter(timeFormat, new Date(num));\n };\n } else if (dataType === \"number\") {\n if (typeof round !== \"undefined\")\n opts.prettify = function(num) {\n let factor = Math.pow(10, round);\n return Math.round(num * factor) / factor;\n };\n }\n\n $el.ionRangeSlider(opts);\n\n function getValue() {\n let result = $el.data(\"ionRangeSlider\").result;\n\n // Function for converting numeric value from slider to appropriate type.\n let convert;\n let dataType = $el.data(\"data-type\");\n if (dataType === \"date\") {\n convert = function(val) {\n return formatDateUTC(new Date(+val));\n };\n } else if (dataType === \"datetime\") {\n convert = function(val) {\n // Convert ms to s\n return +val / 1000;\n };\n } else {\n convert = function(val) { return +val; };\n }\n\n if ($el.data(\"ionRangeSlider\").options.type === \"double\") {\n return [convert(result.from), convert(result.to)];\n } else {\n return convert(result.from);\n }\n }\n\n let lastKnownKeys = null;\n\n $el.on(\"change.crosstalkSliderInput\", function(event) {\n if (!$el.data(\"updating\") && !$el.data(\"animating\")) {\n let [from, to] = getValue();\n let keys = [];\n for (let i = 0; i < data.values.length; i++) {\n let val = data.values[i];\n if (val >= from && val <= to) {\n keys.push(data.keys[i]);\n }\n }\n keys.sort();\n ctHandle.set(keys);\n lastKnownKeys = keys;\n }\n });\n\n\n // let $el = $(el);\n // $el.on(\"change\", \"input[type=\"checkbox\"]\", function() {\n // let checked = $el.find(\"input[type=\"checkbox\"]:checked\");\n // if (checked.length === 0) {\n // ctHandle.clear();\n // } else {\n // let keys = {};\n // checked.each(function() {\n // data.map[this.value].forEach(function(key) {\n // keys[key] = true;\n // });\n // });\n // let keyArray = Object.keys(keys);\n // keyArray.sort();\n // ctHandle.set(keyArray);\n // }\n // });\n\n return {\n suspend: function() {\n ctHandle.clear();\n },\n resume: function() {\n if (lastKnownKeys)\n ctHandle.set(lastKnownKeys);\n }\n };\n }\n});\n\n\n// Convert a number to a string with leading zeros\nfunction padZeros(n, digits) {\n let str = n.toString();\n while (str.length < digits)\n str = \"0\" + str;\n return str;\n}\n\n// Given a Date object, return a string in yyyy-mm-dd format, using the\n// UTC date. This may be a day off from the date in the local time zone.\nfunction formatDateUTC(date) {\n if (date instanceof Date) {\n return date.getUTCFullYear() + \"-\" +\n padZeros(date.getUTCMonth()+1, 2) + \"-\" +\n padZeros(date.getUTCDate(), 2);\n\n } else {\n return null;\n }\n}\n","import Events from \"./events\";\nimport grp from \"./group\";\nimport * as util from \"./util\";\n\n/**\n * Use this class to read and write (and listen for changes to) the selection\n * for a Crosstalk group. This is intended to be used for linked brushing.\n *\n * If two (or more) `SelectionHandle` instances in the same webpage share the\n * same group name, they will share the same state. Setting the selection using\n * one `SelectionHandle` instance will result in the `value` property instantly\n * changing across the others, and `\"change\"` event listeners on all instances\n * (including the one that initiated the sending) will fire.\n *\n * @param {string} [group] - The name of the Crosstalk group, or if none,\n * null or undefined (or any other falsy value). This can be changed later\n * via the [SelectionHandle#setGroup](#setGroup) method.\n * @param {Object} [extraInfo] - An object whose properties will be copied to\n * the event object whenever an event is emitted.\n */\nexport class SelectionHandle {\n\n constructor(group = null, extraInfo = null) {\n this._eventRelay = new Events();\n this._emitter = new util.SubscriptionTracker(this._eventRelay);\n\n // Name of the group we're currently tracking, if any. Can change over time.\n this._group = null;\n // The Var we're currently tracking, if any. Can change over time.\n this._var = null;\n // The event handler subscription we currently have on var.on(\"change\").\n this._varOnChangeSub = null;\n\n this._extraInfo = util.extend({ sender: this }, extraInfo);\n\n this.setGroup(group);\n }\n\n /**\n * Changes the Crosstalk group membership of this SelectionHandle. The group\n * being switched away from (if any) will not have its selection value\n * modified as a result of calling `setGroup`, even if this handle was the\n * most recent handle to set the selection of the group.\n *\n * The group being switched to (if any) will also not have its selection value\n * modified as a result of calling `setGroup`. If you want to set the\n * selection value of the new group, call `set` explicitly.\n *\n * @param {string} group - The name of the Crosstalk group, or null (or\n * undefined) to clear the group.\n */\n setGroup(group) {\n // If group is unchanged, do nothing\n if (this._group === group)\n return;\n // Treat null, undefined, and other falsy values the same\n if (!this._group && !group)\n return;\n\n if (this._var) {\n this._var.off(\"change\", this._varOnChangeSub);\n this._var = null;\n this._varOnChangeSub = null;\n }\n\n this._group = group;\n\n if (group) {\n this._var = grp(group).var(\"selection\");\n let sub = this._var.on(\"change\", (e) => {\n this._eventRelay.trigger(\"change\", e, this);\n });\n this._varOnChangeSub = sub;\n }\n }\n\n /**\n * Retrieves the current selection for the group represented by this\n * `SelectionHandle`.\n *\n * - If no selection is active, then this value will be falsy.\n * - If a selection is active, but no data points are selected, then this\n * value will be an empty array.\n * - If a selection is active, and data points are selected, then the keys\n * of the selected data points will be present in the array.\n */\n get value() {\n return this._var ? this._var.get() : null;\n }\n\n /**\n * Combines the given `extraInfo` (if any) with the handle's default\n * `_extraInfo` (if any).\n * @private\n */\n _mergeExtraInfo(extraInfo) {\n // Important incidental effect: shallow clone is returned\n return util.extend({},\n this._extraInfo ? this._extraInfo : null,\n extraInfo ? extraInfo : null);\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {string[]} selectedKeys - Falsy, empty array, or array of keys (see\n * {@link SelectionHandle#value}).\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any options that were\n * passed into the `SelectionHandle` constructor).\n */\n set(selectedKeys, extraInfo) {\n if (this._var)\n this._var.set(selectedKeys, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Overwrites the current selection for the group, and raises the `\"change\"`\n * event among all of the group's '`SelectionHandle` instances (including\n * this one).\n *\n * @fires SelectionHandle#change\n * @param {Object} [extraInfo] - Extra properties to be included on the event\n * object that's passed to listeners (in addition to any that were passed\n * into the `SelectionHandle` constructor).\n */\n clear(extraInfo) {\n if (this._var)\n this.set(void 0, this._mergeExtraInfo(extraInfo));\n }\n\n /**\n * Subscribes to events on this `SelectionHandle`.\n *\n * @param {string} eventType - Indicates the type of events to listen to.\n * Currently, only `\"change\"` is supported.\n * @param {SelectionHandle~listener} listener - The callback function that\n * will be invoked when the event occurs.\n * @return {string} - A token to pass to {@link SelectionHandle#off} to cancel\n * this subscription.\n */\n on(eventType, listener) {\n return this._emitter.on(eventType, listener);\n }\n\n /**\n * Cancels event subscriptions created by {@link SelectionHandle#on}.\n *\n * @param {string} eventType - The type of event to unsubscribe.\n * @param {string|SelectionHandle~listener} listener - Either the callback\n * function previously passed into {@link SelectionHandle#on}, or the\n * string that was returned from {@link SelectionHandle#on}.\n */\n off(eventType, listener) {\n return this._emitter.off(eventType, listener);\n }\n\n /**\n * Shuts down the `SelectionHandle` object.\n *\n * Removes all event listeners that were added through this handle.\n */\n close() {\n this._emitter.removeAllListeners();\n this.setGroup(null);\n }\n}\n\n/**\n * @callback SelectionHandle~listener\n * @param {Object} event - An object containing details of the event. For\n * `\"change\"` events, this includes the properties `value` (the new\n * value of the selection, or `undefined` if no selection is active),\n * `oldValue` (the previous value of the selection), and `sender` (the\n * `SelectionHandle` instance that made the change).\n */\n\n/**\n * @event SelectionHandle#change\n * @type {object}\n * @property {object} value - The new value of the selection, or `undefined`\n * if no selection is active.\n * @property {object} oldValue - The previous value of the selection.\n * @property {SelectionHandle} sender - The `SelectionHandle` instance that\n * changed the value.\n */\n","export function extend(target, ...sources) {\n for (let i = 0; i < sources.length; i++) {\n let src = sources[i];\n if (typeof(src) === \"undefined\" || src === null)\n continue;\n\n for (let key in src) {\n if (src.hasOwnProperty(key)) {\n target[key] = src[key];\n }\n }\n }\n return target;\n}\n\nexport function checkSorted(list) {\n for (let i = 1; i < list.length; i++) {\n if (list[i] <= list[i-1]) {\n throw new Error(\"List is not sorted or contains duplicate\");\n }\n }\n}\n\nexport function diffSortedLists(a, b) {\n let i_a = 0;\n let i_b = 0;\n\n if (!a) a = [];\n if (!b) b = [];\n\n let a_only = [];\n let b_only = [];\n\n checkSorted(a);\n checkSorted(b);\n\n while (i_a < a.length && i_b < b.length) {\n if (a[i_a] === b[i_b]) {\n i_a++;\n i_b++;\n } else if (a[i_a] < b[i_b]) {\n a_only.push(a[i_a++]);\n } else {\n b_only.push(b[i_b++]);\n }\n }\n\n if (i_a < a.length)\n a_only = a_only.concat(a.slice(i_a));\n if (i_b < b.length)\n b_only = b_only.concat(b.slice(i_b));\n return {\n removed: a_only,\n added: b_only\n };\n}\n\n// Convert from wide: { colA: [1,2,3], colB: [4,5,6], ... }\n// to long: [ {colA: 1, colB: 4}, {colA: 2, colB: 5}, ... ]\nexport function dataframeToD3(df) {\n let names = [];\n let length;\n for (let name in df) {\n if (df.hasOwnProperty(name))\n names.push(name);\n if (typeof(df[name]) !== \"object\" || typeof(df[name].length) === \"undefined\") {\n throw new Error(\"All fields must be arrays\");\n } else if (typeof(length) !== \"undefined\" && length !== df[name].length) {\n throw new Error(\"All fields must be arrays of the same length\");\n }\n length = df[name].length;\n }\n let results = [];\n let item;\n for (let row = 0; row < length; row++) {\n item = {};\n for (let col = 0; col < names.length; col++) {\n item[names[col]] = df[names[col]][row];\n }\n results.push(item);\n }\n return results;\n}\n\n/**\n * Keeps track of all event listener additions/removals and lets all active\n * listeners be removed with a single operation.\n *\n * @private\n */\nexport class SubscriptionTracker {\n constructor(emitter) {\n this._emitter = emitter;\n this._subs = {};\n }\n\n on(eventType, listener) {\n let sub = this._emitter.on(eventType, listener);\n this._subs[sub] = eventType;\n return sub;\n }\n\n off(eventType, listener) {\n let sub = this._emitter.off(eventType, listener);\n if (sub) {\n delete this._subs[sub];\n }\n return sub;\n }\n\n removeAllListeners() {\n let current_subs = this._subs;\n this._subs = {};\n Object.keys(current_subs).forEach((sub) => {\n this._emitter.off(current_subs[sub], sub);\n });\n }\n}\n","import Events from \"./events\";\n\nexport default class Var {\n constructor(group, name, /*optional*/ value) {\n this._group = group;\n this._name = name;\n this._value = value;\n this._events = new Events();\n }\n\n get() {\n return this._value;\n }\n\n set(value, /*optional*/ event) {\n if (this._value === value) {\n // Do nothing; the value hasn't changed\n return;\n }\n let oldValue = this._value;\n this._value = value;\n // Alert JavaScript listeners that the value has changed\n let evt = {};\n if (event && typeof(event) === \"object\") {\n for (let k in event) {\n if (event.hasOwnProperty(k))\n evt[k] = event[k];\n }\n }\n evt.oldValue = oldValue;\n evt.value = value;\n this._events.trigger(\"change\", evt, this);\n\n // TODO: Make this extensible, to let arbitrary back-ends know that\n // something has changed\n if (global.Shiny && global.Shiny.onInputChange) {\n global.Shiny.onInputChange(\n \".clientValue-\" +\n (this._group.name !== null ? this._group.name + \"-\" : \"\") +\n this._name,\n typeof(value) === \"undefined\" ? null : value\n );\n }\n }\n\n on(eventType, listener) {\n return this._events.on(eventType, listener);\n }\n\n off(eventType, listener) {\n return this._events.off(eventType, listener);\n }\n}\n"]} \ No newline at end of file diff --git a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/scss/crosstalk.scss b/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/scss/crosstalk.scss deleted file mode 100644 index 35665616..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/crosstalk-1.2.1/scss/crosstalk.scss +++ /dev/null @@ -1,75 +0,0 @@ -/* Adjust margins outwards, so column contents line up with the edges of the - parent of container-fluid. */ -.container-fluid.crosstalk-bscols { - margin-left: -30px; - margin-right: -30px; - white-space: normal; -} - -/* But don't adjust the margins outwards if we're directly under the body, - i.e. we were the top-level of something at the console. */ -body > .container-fluid.crosstalk-bscols { - margin-left: auto; - margin-right: auto; -} - -.crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: inline-block; - padding-right: 12px; - vertical-align: top; -} - -@media only screen and (max-width:480px) { - .crosstalk-input-checkboxgroup .crosstalk-options-group .crosstalk-options-column { - display: block; - padding-right: inherit; - } -} - -/* Relevant BS3 styles to make filter_checkbox() look reasonable without Bootstrap */ -.crosstalk-input { - margin-bottom: 15px; /* a la .form-group */ - .control-label { - margin-bottom: 0; - vertical-align: middle; - } - input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px; - line-height: normal; - } - .checkbox { - position: relative; - display: block; - margin-top: 10px; - margin-bottom: 10px; - } - .checkbox > label{ - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - cursor: pointer; - } - .checkbox input[type="checkbox"], - .checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 2px; - margin-left: -20px; - } - .checkbox + .checkbox { - margin-top: -5px; - } - .checkbox-inline { - position: relative; - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: 400; - vertical-align: middle; - cursor: pointer; - } - .checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; - } -} diff --git a/docs/articles/VarinatAnimation-Kolkata_files/datatables-binding-0.31/datatables.js b/docs/articles/VarinatAnimation-Kolkata_files/datatables-binding-0.31/datatables.js deleted file mode 100644 index d21dff0b..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/datatables-binding-0.31/datatables.js +++ /dev/null @@ -1,1519 +0,0 @@ -(function() { - -// some helper functions: using a global object DTWidget so that it can be used -// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's -// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects -// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made -// a global object -var DTWidget = {}; - -// 123456666.7890 -> 123,456,666.7890 -var markInterval = function(d, digits, interval, mark, decMark, precision) { - x = precision ? d.toPrecision(digits) : d.toFixed(digits); - if (!/^-?[\d.]+$/.test(x)) return x; - var xv = x.split('.'); - if (xv.length > 2) return x; // should have at most one decimal point - xv[0] = xv[0].replace(new RegExp('\\B(?=(\\d{' + interval + '})+(?!\\d))', 'g'), mark); - return xv.join(decMark); -}; - -DTWidget.formatCurrency = function(data, currency, digits, interval, mark, decMark, before, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - var res = markInterval(d, digits, interval, mark, decMark); - res = before ? (/^-/.test(res) ? '-' + currency + res.replace(/^-/, '') : currency + res) : - res + currency; - return res; -}; - -DTWidget.formatString = function(data, prefix, suffix) { - var d = data; - if (d === null) return ''; - return prefix + d + suffix; -}; - -DTWidget.formatPercentage = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d * 100, digits, interval, mark, decMark) + '%'; -}; - -DTWidget.formatRound = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark); -}; - -DTWidget.formatSignif = function(data, digits, interval, mark, decMark, zeroPrint) { - var d = parseFloat(data); - if (isNaN(d)) return ''; - if (zeroPrint !== null && d === 0.0) return zeroPrint; - return markInterval(d, digits, interval, mark, decMark, true); -}; - -DTWidget.formatDate = function(data, method, params) { - var d = data; - if (d === null) return ''; - // (new Date('2015-10-28')).toDateString() may return 2015-10-27 because the - // actual time created could be like 'Tue Oct 27 2015 19:00:00 GMT-0500 (CDT)', - // i.e. the date-only string is treated as UTC time instead of local time - if ((method === 'toDateString' || method === 'toLocaleDateString') && /^\d{4,}\D\d{2}\D\d{2}$/.test(d)) { - d = d.split(/\D/); - d = new Date(d[0], d[1] - 1, d[2]); - } else { - d = new Date(d); - } - return d[method].apply(d, params); -}; - -window.DTWidget = DTWidget; - -// A helper function to update the properties of existing filters -var setFilterProps = function(td, props) { - // Update enabled/disabled state - var $input = $(td).find('input').first(); - var searchable = $input.data('searchable'); - $input.prop('disabled', !searchable || props.disabled); - - // Based on the filter type, set its new values - var type = td.getAttribute('data-type'); - if (['factor', 'logical'].includes(type)) { - // Reformat the new dropdown options for use with selectize - var new_vals = props.params.options.map(function(item) { - return { text: item, value: item }; - }); - - // Find the selectize object - var dropdown = $(td).find('.selectized').eq(0)[0].selectize; - - // Note the current values - var old_vals = dropdown.getValue(); - - // Remove the existing values - dropdown.clearOptions(); - - // Add the new options - dropdown.addOption(new_vals); - - // Preserve the existing values - dropdown.setValue(old_vals); - - } else if (['number', 'integer', 'date', 'time'].includes(type)) { - // Apply internal scaling to new limits. Updating scale not yet implemented. - var slider = $(td).find('.noUi-target').eq(0); - var scale = Math.pow(10, Math.max(0, +slider.data('scale') || 0)); - var new_vals = [props.params.min * scale, props.params.max * scale]; - - // Note what the new limits will be just for this filter - var new_lims = new_vals.slice(); - - // Determine the current values and limits - var old_vals = slider.val().map(Number); - var old_lims = slider.noUiSlider('options').range; - old_lims = [old_lims.min, old_lims.max]; - - // Preserve the current values if filters have been applied; otherwise, apply no filtering - if (old_vals[0] != old_lims[0]) { - new_vals[0] = Math.max(old_vals[0], new_vals[0]); - } - - if (old_vals[1] != old_lims[1]) { - new_vals[1] = Math.min(old_vals[1], new_vals[1]); - } - - // Update the endpoints of the slider - slider.noUiSlider({ - start: new_vals, - range: {'min': new_lims[0], 'max': new_lims[1]} - }, true); - } -}; - -var transposeArray2D = function(a) { - return a.length === 0 ? a : HTMLWidgets.transposeArray2D(a); -}; - -var crosstalkPluginsInstalled = false; - -function maybeInstallCrosstalkPlugins() { - if (crosstalkPluginsInstalled) - return; - crosstalkPluginsInstalled = true; - - $.fn.dataTable.ext.afnFiltering.push( - function(oSettings, aData, iDataIndex) { - var ctfilter = oSettings.nTable.ctfilter; - if (ctfilter && !ctfilter[iDataIndex]) - return false; - - var ctselect = oSettings.nTable.ctselect; - if (ctselect && !ctselect[iDataIndex]) - return false; - - return true; - } - ); -} - -HTMLWidgets.widget({ - name: "datatables", - type: "output", - renderOnNullValue: true, - initialize: function(el, width, height) { - // in order that the type=number inputs return a number - $.valHooks.number = { - get: function(el) { - var value = parseFloat(el.value); - return isNaN(value) ? "" : value; - } - }; - $(el).html(' '); - return { - data: null, - ctfilterHandle: new crosstalk.FilterHandle(), - ctfilterSubscription: null, - ctselectHandle: new crosstalk.SelectionHandle(), - ctselectSubscription: null - }; - }, - renderValue: function(el, data, instance) { - if (el.offsetWidth === 0 || el.offsetHeight === 0) { - instance.data = data; - return; - } - instance.data = null; - var $el = $(el); - $el.empty(); - - if (data === null) { - $el.append(' '); - // clear previous Shiny inputs (if any) - for (var i in instance.clearInputs) instance.clearInputs[i](); - instance.clearInputs = {}; - return; - } - - var crosstalkOptions = data.crosstalkOptions; - if (!crosstalkOptions) crosstalkOptions = { - 'key': null, 'group': null - }; - if (crosstalkOptions.group) { - maybeInstallCrosstalkPlugins(); - instance.ctfilterHandle.setGroup(crosstalkOptions.group); - instance.ctselectHandle.setGroup(crosstalkOptions.group); - } - - // if we are in the viewer then we always want to fillContainer and - // and autoHideNavigation (unless the user has explicitly set these) - if (window.HTMLWidgets.viewerMode) { - if (!data.hasOwnProperty("fillContainer")) - data.fillContainer = true; - if (!data.hasOwnProperty("autoHideNavigation")) - data.autoHideNavigation = true; - } - - // propagate fillContainer to instance (so we have it in resize) - instance.fillContainer = data.fillContainer; - - var cells = data.data; - - if (cells instanceof Array) cells = transposeArray2D(cells); - - $el.append(data.container); - var $table = $el.find('table'); - if (data.class) $table.addClass(data.class); - if (data.caption) $table.prepend(data.caption); - - if (!data.selection) data.selection = { - mode: 'none', selected: null, target: 'row', selectable: null - }; - if (HTMLWidgets.shinyMode && data.selection.mode !== 'none' && - data.selection.target === 'row+column') { - if ($table.children('tfoot').length === 0) { - $table.append($('')); - $table.find('thead tr').clone().appendTo($table.find('tfoot')); - } - } - - // column filters - var filterRow; - switch (data.filter) { - case 'top': - $table.children('thead').append(data.filterHTML); - filterRow = $table.find('thead tr:last td'); - break; - case 'bottom': - if ($table.children('tfoot').length === 0) { - $table.append($('')); - } - $table.children('tfoot').prepend(data.filterHTML); - filterRow = $table.find('tfoot tr:first td'); - break; - } - - var options = { searchDelay: 1000 }; - if (cells !== null) $.extend(options, { - data: cells - }); - - // options for fillContainer - var bootstrapActive = typeof($.fn.popover) != 'undefined'; - if (instance.fillContainer) { - - // force scrollX/scrollY and turn off autoWidth - options.scrollX = true; - options.scrollY = "100px"; // can be any value, we'll adjust below - - // if we aren't paginating then move around the info/filter controls - // to save space at the bottom and rephrase the info callback - if (data.options.paging === false) { - - // we know how to do this cleanly for bootstrap, not so much - // for other themes/layouts - if (bootstrapActive) { - options.dom = "<'row'<'col-sm-4'i><'col-sm-8'f>>" + - "<'row'<'col-sm-12'tr>>"; - } - - options.fnInfoCallback = function(oSettings, iStart, iEnd, - iMax, iTotal, sPre) { - return Number(iTotal).toLocaleString() + " records"; - }; - } - } - - // auto hide navigation if requested - // Note, this only works on client-side processing mode as on server-side, - // cells (data.data) is null; In addition, we require the pageLength option - // being provided explicitly to enable this. Despite we may be able to deduce - // the default value of pageLength, it may complicate things so we'd rather - // put this responsiblity to users and warn them on the R side. - if (data.autoHideNavigation === true && data.options.paging !== false) { - // strip all nav if length >= cells - if ((cells instanceof Array) && data.options.pageLength >= cells.length) - options.dom = bootstrapActive ? "<'row'<'col-sm-12'tr>>" : "t"; - // alternatively lean things out for flexdashboard mobile portrait - else if (bootstrapActive && window.FlexDashboard && window.FlexDashboard.isMobilePhone()) - options.dom = "<'row'<'col-sm-12'f>>" + - "<'row'<'col-sm-12'tr>>" + - "<'row'<'col-sm-12'p>>"; - } - - $.extend(true, options, data.options || {}); - - var searchCols = options.searchCols; - if (searchCols) { - searchCols = searchCols.map(function(x) { - return x === null ? '' : x.search; - }); - // FIXME: this means I don't respect the escapeRegex setting - delete options.searchCols; - } - - // server-side processing? - var server = options.serverSide === true; - - // use the dataSrc function to pre-process JSON data returned from R - var DT_rows_all = [], DT_rows_current = []; - if (server && HTMLWidgets.shinyMode && typeof options.ajax === 'object' && - /^session\/[\da-z]+\/dataobj/.test(options.ajax.url) && !options.ajax.dataSrc) { - options.ajax.dataSrc = function(json) { - DT_rows_all = $.makeArray(json.DT_rows_all); - DT_rows_current = $.makeArray(json.DT_rows_current); - var data = json.data; - if (!colReorderEnabled()) return data; - var table = $table.DataTable(), order = table.colReorder.order(), flag = true, i, j, row; - for (i = 0; i < order.length; ++i) if (order[i] !== i) flag = false; - if (flag) return data; - for (i = 0; i < data.length; ++i) { - row = data[i].slice(); - for (j = 0; j < order.length; ++j) data[i][j] = row[order[j]]; - } - return data; - }; - } - - var thiz = this; - if (instance.fillContainer) $table.on('init.dt', function(e) { - thiz.fillAvailableHeight(el, $(el).innerHeight()); - }); - // If the page contains serveral datatables and one of which enables colReorder, - // the table.colReorder.order() function will exist but throws error when called. - // So it seems like the only way to know if colReorder is enabled or not is to - // check the options. - var colReorderEnabled = function() { return "colReorder" in options; }; - var table = $table.DataTable(options); - $el.data('datatable', table); - - // Unregister previous Crosstalk event subscriptions, if they exist - if (instance.ctfilterSubscription) { - instance.ctfilterHandle.off("change", instance.ctfilterSubscription); - instance.ctfilterSubscription = null; - } - if (instance.ctselectSubscription) { - instance.ctselectHandle.off("change", instance.ctselectSubscription); - instance.ctselectSubscription = null; - } - - if (!crosstalkOptions.group) { - $table[0].ctfilter = null; - $table[0].ctselect = null; - } else { - var key = crosstalkOptions.key; - function keysToMatches(keys) { - if (!keys) { - return null; - } else { - var selectedKeys = {}; - for (var i = 0; i < keys.length; i++) { - selectedKeys[keys[i]] = true; - } - var matches = {}; - for (var j = 0; j < key.length; j++) { - if (selectedKeys[key[j]]) - matches[j] = true; - } - return matches; - } - } - - function applyCrosstalkFilter(e) { - $table[0].ctfilter = keysToMatches(e.value); - table.draw(); - } - instance.ctfilterSubscription = instance.ctfilterHandle.on("change", applyCrosstalkFilter); - applyCrosstalkFilter({value: instance.ctfilterHandle.filteredKeys}); - - function applyCrosstalkSelection(e) { - if (e.sender !== instance.ctselectHandle) { - table - .rows('.' + selClass, {search: 'applied'}) - .nodes() - .to$() - .removeClass(selClass); - if (selectedRows) - changeInput('rows_selected', selectedRows(), void 0, true); - } - - if (e.sender !== instance.ctselectHandle && e.value && e.value.length) { - var matches = keysToMatches(e.value); - - // persistent selection with plotly (& leaflet) - var ctOpts = crosstalk.var("plotlyCrosstalkOpts").get() || {}; - if (ctOpts.persistent === true) { - var matches = $.extend(matches, $table[0].ctselect); - } - - $table[0].ctselect = matches; - table.draw(); - } else { - if ($table[0].ctselect) { - $table[0].ctselect = null; - table.draw(); - } - } - } - instance.ctselectSubscription = instance.ctselectHandle.on("change", applyCrosstalkSelection); - // TODO: This next line doesn't seem to work when renderDataTable is used - applyCrosstalkSelection({value: instance.ctselectHandle.value}); - } - - var inArray = function(val, array) { - return $.inArray(val, $.makeArray(array)) > -1; - }; - - // search the i-th column - var searchColumn = function(i, value) { - var regex = false, ci = true; - if (options.search) { - regex = options.search.regex, - ci = options.search.caseInsensitive !== false; - } - // need to transpose the column index when colReorder is enabled - if (table.colReorder) i = table.colReorder.transpose(i); - return table.column(i).search(value, regex, !regex, ci); - }; - - if (data.filter !== 'none') { - - filterRow.each(function(i, td) { - - var $td = $(td), type = $td.data('type'), filter; - var $input = $td.children('div').first().children('input'); - var disabled = $input.prop('disabled'); - var searchable = table.settings()[0].aoColumns[i].bSearchable; - $input.prop('disabled', !searchable || disabled); - $input.data('searchable', searchable); // for updating later - $input.on('input blur', function() { - $input.next('span').toggle(Boolean($input.val())); - }); - // Bootstrap sets pointer-events to none and we won't be able to click - // the clear button - $input.next('span').css('pointer-events', 'auto').hide().click(function() { - $(this).hide().prev('input').val('').trigger('input').focus(); - }); - var searchCol; // search string for this column - if (searchCols && searchCols[i]) { - searchCol = searchCols[i]; - $input.val(searchCol).trigger('input'); - } - var $x = $td.children('div').last(); - - // remove the overflow: hidden attribute of the scrollHead - // (otherwise the scrolling table body obscures the filters) - // The workaround and the discussion from - // https://github.com/rstudio/DT/issues/554#issuecomment-518007347 - // Otherwise the filter selection will not be anchored to the values - // when the columns number is many and scrollX is enabled. - var scrollHead = $(el).find('.dataTables_scrollHead,.dataTables_scrollFoot'); - var cssOverflowHead = scrollHead.css('overflow'); - var scrollBody = $(el).find('.dataTables_scrollBody'); - var cssOverflowBody = scrollBody.css('overflow'); - var scrollTable = $(el).find('.dataTables_scroll'); - var cssOverflowTable = scrollTable.css('overflow'); - if (cssOverflowHead === 'hidden') { - $x.on('show hide', function(e) { - if (e.type === 'show') { - scrollHead.css('overflow', 'visible'); - scrollBody.css('overflow', 'visible'); - scrollTable.css('overflow-x', 'scroll'); - } else { - scrollHead.css('overflow', cssOverflowHead); - scrollBody.css('overflow', cssOverflowBody); - scrollTable.css('overflow-x', cssOverflowTable); - } - }); - $x.css('z-index', 25); - } - - if (inArray(type, ['factor', 'logical'])) { - $input.on({ - click: function() { - $input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus(); - }, - input: function() { - var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val(); - if (v1 === '[]') v1 = ''; - if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2)); - } - }); - var $input2 = $x.children('select'); - filter = $input2.selectize({ - options: $input2.data('options').map(function(v, i) { - return ({text: v, value: v}); - }), - plugins: ['remove_button'], - hideSelected: true, - onChange: function(value) { - if (value === null) value = []; // compatibility with jQuery 3.0 - $input.val(value.length ? JSON.stringify(value) : ''); - if (value.length) $input.trigger('input'); - $input.attr('title', $input.val()); - if (server) { - searchColumn(i, value.length ? JSON.stringify(value) : '').draw(); - return; - } - // turn off filter if nothing selected - $td.data('filter', value.length > 0); - table.draw(); // redraw table, and filters will be applied - } - }); - if (searchCol) filter[0].selectize.setValue(JSON.parse(searchCol)); - filter[0].selectize.on('blur', function() { - $x.hide().trigger('hide'); $input.parent().show(); $input.trigger('blur'); - }); - filter.next('div').css('margin-bottom', 'auto'); - } else if (type === 'character') { - var fun = function() { - searchColumn(i, $input.val()).draw(); - }; - if (server) { - fun = $.fn.dataTable.util.throttle(fun, options.searchDelay); - } - $input.on('input', fun); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - var $x0 = $x; - $x = $x0.children('div').first(); - $x0.css({ - 'background-color': '#fff', - 'border': '1px #ddd solid', - 'border-radius': '4px', - 'padding': data.vertical ? '35px 20px': '20px 20px 10px 20px' - }); - var $spans = $x0.children('span').css({ - 'margin-top': data.vertical ? '0' : '10px', - 'white-space': 'nowrap' - }); - var $span1 = $spans.first(), $span2 = $spans.last(); - var r1 = +$x.data('min'), r2 = +$x.data('max'); - // when the numbers are too small or have many decimal places, the - // slider may have numeric precision problems (#150) - var scale = Math.pow(10, Math.max(0, +$x.data('scale') || 0)); - r1 = Math.round(r1 * scale); r2 = Math.round(r2 * scale); - var scaleBack = function(x, scale) { - if (scale === 1) return x; - var d = Math.round(Math.log(scale) / Math.log(10)); - // to avoid problems like 3.423/100 -> 0.034230000000000003 - return (x / scale).toFixed(d); - }; - var slider_min = function() { - return filter.noUiSlider('options').range.min; - }; - var slider_max = function() { - return filter.noUiSlider('options').range.max; - }; - $input.on({ - focus: function() { - $x0.show().trigger('show'); - // first, make sure the slider div leaves at least 20px between - // the two (slider value) span's - $x0.width(Math.max(160, $span1.outerWidth() + $span2.outerWidth() + 20)); - // then, if the input is really wide or slider is vertical, - // make the slider the same width as the input - if ($x0.outerWidth() < $input.outerWidth() || data.vertical) { - $x0.outerWidth($input.outerWidth()); - } - // make sure the slider div does not reach beyond the right margin - if ($(window).width() < $x0.offset().left + $x0.width()) { - $x0.offset({ - 'left': $input.offset().left + $input.outerWidth() - $x0.outerWidth() - }); - } - }, - blur: function() { - $x0.hide().trigger('hide'); - }, - input: function() { - if ($input.val() === '') filter.val([slider_min(), slider_max()]); - }, - change: function() { - var v = $input.val().replace(/\s/g, ''); - if (v === '') return; - v = v.split('...'); - if (v.length !== 2) { - $input.parent().addClass('has-error'); - return; - } - if (v[0] === '') v[0] = slider_min(); - if (v[1] === '') v[1] = slider_max(); - $input.parent().removeClass('has-error'); - // treat date as UTC time at midnight - var strTime = function(x) { - var s = type === 'date' ? 'T00:00:00Z' : ''; - var t = new Date(x + s).getTime(); - // add 10 minutes to date since it does not hurt the date, and - // it helps avoid the tricky floating point arithmetic problems, - // e.g. sometimes the date may be a few milliseconds earlier - // than the midnight due to precision problems in noUiSlider - return type === 'date' ? t + 3600000 : t; - }; - if (inArray(type, ['date', 'time'])) { - v[0] = strTime(v[0]); - v[1] = strTime(v[1]); - } - if (v[0] != slider_min()) v[0] *= scale; - if (v[1] != slider_max()) v[1] *= scale; - filter.val(v); - } - }); - var formatDate = function(d, isoFmt) { - d = scaleBack(d, scale); - if (type === 'number') return d; - if (type === 'integer') return parseInt(d); - var x = new Date(+d); - var fmt = ('filterDateFmt' in data) ? data.filterDateFmt[i] : undefined; - if (fmt !== undefined && isoFmt === false) return x[fmt.method].apply(x, fmt.params); - if (type === 'date') { - var pad0 = function(x) { - return ('0' + x).substr(-2, 2); - }; - return x.getUTCFullYear() + '-' + pad0(1 + x.getUTCMonth()) - + '-' + pad0(x.getUTCDate()); - } else { - return x.toISOString(); - } - }; - var opts = type === 'date' ? { step: 60 * 60 * 1000 } : - type === 'integer' ? { step: 1 } : {}; - - opts.orientation = data.vertical ? 'vertical': 'horizontal'; - opts.direction = data.vertical ? 'rtl': 'ltr'; - - filter = $x.noUiSlider($.extend({ - start: [r1, r2], - range: {min: r1, max: r2}, - connect: true - }, opts)); - if (scale > 1) (function() { - var t1 = r1, t2 = r2; - var val = filter.val(); - while (val[0] > r1 || val[1] < r2) { - if (val[0] > r1) { - t1 -= val[0] - r1; - } - if (val[1] < r2) { - t2 += r2 - val[1]; - } - filter = $x.noUiSlider($.extend({ - start: [t1, t2], - range: {min: t1, max: t2}, - connect: true - }, opts), true); - val = filter.val(); - } - r1 = t1; r2 = t2; - })(); - var updateSliderText = function(v1, v2) { - $span1.text(formatDate(v1, false)); $span2.text(formatDate(v2, false)); - }; - updateSliderText(r1, r2); - var updateSlider = function(e) { - var val = filter.val(); - // turn off filter if in full range - $td.data('filter', val[0] > slider_min() || val[1] < slider_max()); - var v1 = formatDate(val[0]), v2 = formatDate(val[1]), ival; - if ($td.data('filter')) { - ival = v1 + ' ... ' + v2; - $input.attr('title', ival).val(ival).trigger('input'); - } else { - $input.attr('title', '').val(''); - } - updateSliderText(val[0], val[1]); - if (e.type === 'slide') return; // no searching when sliding only - if (server) { - searchColumn(i, $td.data('filter') ? ival : '').draw(); - return; - } - table.draw(); - }; - filter.on({ - set: updateSlider, - slide: updateSlider - }); - } - - // server-side processing will be handled by R (or whatever server - // language you use); the following code is only needed for client-side - // processing - if (server) { - // if a search string has been pre-set, search now - if (searchCol) searchColumn(i, searchCol).draw(); - return; - } - - var customFilter = function(settings, data, dataIndex) { - // there is no way to attach a search function to a specific table, - // and we need to make sure a global search function is not applied to - // all tables (i.e. a range filter in a previous table should not be - // applied to the current table); we use the settings object to - // determine if we want to perform searching on the current table, - // since settings.sTableId will be different to different tables - if (table.settings()[0] !== settings) return true; - // no filter on this column or no need to filter this column - if (typeof filter === 'undefined' || !$td.data('filter')) return true; - - var r = filter.val(), v, r0, r1; - var i_data = function(i) { - if (!colReorderEnabled()) return i; - var order = table.colReorder.order(), k; - for (k = 0; k < order.length; ++k) if (order[k] === i) return k; - return i; // in theory it will never be here... - } - v = data[i_data(i)]; - if (type === 'number' || type === 'integer') { - v = parseFloat(v); - // how to handle NaN? currently exclude these rows - if (isNaN(v)) return(false); - r0 = parseFloat(scaleBack(r[0], scale)) - r1 = parseFloat(scaleBack(r[1], scale)); - if (v >= r0 && v <= r1) return true; - } else if (type === 'date' || type === 'time') { - v = new Date(v); - r0 = new Date(r[0] / scale); r1 = new Date(r[1] / scale); - if (v >= r0 && v <= r1) return true; - } else if (type === 'factor') { - if (r.length === 0 || inArray(v, r)) return true; - } else if (type === 'logical') { - if (r.length === 0) return true; - if (inArray(v === '' ? 'na' : v, r)) return true; - } - return false; - }; - - $.fn.dataTable.ext.search.push(customFilter); - - // search for the preset search strings if it is non-empty - if (searchCol) { - if (inArray(type, ['factor', 'logical'])) { - filter[0].selectize.setValue(JSON.parse(searchCol)); - } else if (type === 'character') { - $input.trigger('input'); - } else if (inArray(type, ['number', 'integer', 'date', 'time'])) { - $input.trigger('change'); - } - } - - }); - - } - - // highlight search keywords - var highlight = function() { - var body = $(table.table().body()); - // removing the old highlighting first - body.unhighlight(); - - // don't highlight the "not found" row, so we get the rows using the api - if (table.rows({ filter: 'applied' }).data().length === 0) return; - // highlight global search keywords - body.highlight($.trim(table.search()).split(/\s+/)); - // then highlight keywords from individual column filters - if (filterRow) filterRow.each(function(i, td) { - var $td = $(td), type = $td.data('type'); - if (type !== 'character') return; - var $input = $td.children('div').first().children('input'); - var column = table.column(i).nodes().to$(), - val = $.trim($input.val()); - if (type !== 'character' || val === '') return; - column.highlight(val.split(/\s+/)); - }); - }; - - if (options.searchHighlight) { - table - .on('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth', highlight) - .on('destroy', function() { - // remove event handler - table.off('draw.dt.dth column-visibility.dt.dth column-reorder.dt.dth'); - }); - - // Set the option for escaping regex characters in our search string. This will be used - // for all future matching. - jQuery.fn.highlight.options.escapeRegex = (!options.search || !options.search.regex); - - // initial highlight for state saved conditions and initial states - highlight(); - } - - // run the callback function on the table instance - if (typeof data.callback === 'function') data.callback(table); - - // double click to edit the cell, row, column, or all cells - if (data.editable) table.on('dblclick.dt', 'tbody td', function(e) { - // only bring up the editor when the cell itself is dbclicked, and ignore - // other dbclick events bubbled up (e.g. from the ) - if (e.target !== this) return; - var target = [], immediate = false; - switch (data.editable.target) { - case 'cell': - target = [this]; - immediate = true; // edit will take effect immediately - break; - case 'row': - target = table.cells(table.cell(this).index().row, '*').nodes(); - break; - case 'column': - target = table.cells('*', table.cell(this).index().column).nodes(); - break; - case 'all': - target = table.cells().nodes(); - break; - default: - throw 'The editable parameter must be "cell", "row", "column", or "all"'; - } - var disableCols = data.editable.disable ? data.editable.disable.columns : null; - var numericCols = data.editable.numeric; - var areaCols = data.editable.area; - var dateCols = data.editable.date; - for (var i = 0; i < target.length; i++) { - (function(cell, current) { - var $cell = $(cell), html = $cell.html(); - var _cell = table.cell(cell), value = _cell.data(), index = _cell.index().column; - var $input; - if (inArray(index, numericCols)) { - $input = $(''); - } else if (inArray(index, areaCols)) { - $input = $(''); - } else if (inArray(index, dateCols)) { - $input = $(''); - } else { - $input = $(''); - } - if (!immediate) { - $cell.data('input', $input).data('html', html); - $input.attr('title', 'Hit Ctrl+Enter to finish editing, or Esc to cancel'); - } - $input.val(value); - if (inArray(index, disableCols)) { - $input.attr('readonly', '').css('filter', 'invert(25%)'); - } - $cell.empty().append($input); - if (cell === current) $input.focus(); - $input.css('width', '100%'); - - if (immediate) $input.on('blur', function(e) { - var valueNew = $input.val(); - if (valueNew !== value) { - _cell.data(valueNew); - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', [cellInfo(cell)], 'DT.cellInfo', null, {priority: 'event'}); - } - // for server-side processing, users have to call replaceData() to update the table - if (!server) table.draw(false); - } else { - $cell.html(html); - } - }).on('keyup', function(e) { - // hit Escape to cancel editing - if (e.keyCode === 27) $input.trigger('blur'); - }); - - // bulk edit (row, column, or all) - if (!immediate) $input.on('keyup', function(e) { - var removeInput = function($cell, restore) { - $cell.data('input').remove(); - if (restore) $cell.html($cell.data('html')); - } - if (e.keyCode === 27) { - for (var i = 0; i < target.length; i++) { - removeInput($(target[i]), true); - } - } else if (e.keyCode === 13 && e.ctrlKey) { - // Ctrl + Enter - var cell, $cell, _cell, cellData = []; - for (var i = 0; i < target.length; i++) { - cell = target[i]; $cell = $(cell); _cell = table.cell(cell); - _cell.data($cell.data('input').val()); - HTMLWidgets.shinyMode && cellData.push(cellInfo(cell)); - removeInput($cell, false); - } - if (HTMLWidgets.shinyMode) { - changeInput('cell_edit', cellData, 'DT.cellInfo', null, {priority: "event"}); - } - if (!server) table.draw(false); - } - }); - })(target[i], this); - } - }); - - // interaction with shiny - if (!HTMLWidgets.shinyMode && !crosstalkOptions.group) return; - - var methods = {}; - var shinyData = {}; - - methods.updateCaption = function(caption) { - if (!caption) return; - $table.children('caption').replaceWith(caption); - } - - // register clear functions to remove input values when the table is removed - instance.clearInputs = {}; - - var changeInput = function(id, value, type, noCrosstalk, opts) { - var event = id; - id = el.id + '_' + id; - if (type) id = id + ':' + type; - // do not update if the new value is the same as old value - if (event !== 'cell_edit' && !/_clicked$/.test(event) && shinyData.hasOwnProperty(id) && shinyData[id] === JSON.stringify(value)) - return; - shinyData[id] = JSON.stringify(value); - if (HTMLWidgets.shinyMode && Shiny.setInputValue) { - Shiny.setInputValue(id, value, opts); - if (!instance.clearInputs[id]) instance.clearInputs[id] = function() { - Shiny.setInputValue(id, null); - } - } - - // HACK - if (event === "rows_selected" && !noCrosstalk) { - if (crosstalkOptions.group) { - var keys = crosstalkOptions.key; - var selectedKeys = null; - if (value) { - selectedKeys = []; - for (var i = 0; i < value.length; i++) { - // The value array's contents use 1-based row numbers, so we must - // convert to 0-based before indexing into the keys array. - selectedKeys.push(keys[value[i] - 1]); - } - } - instance.ctselectHandle.set(selectedKeys); - } - } - }; - - var addOne = function(x) { - return x.map(function(i) { return 1 + i; }); - }; - - var unique = function(x) { - var ux = []; - $.each(x, function(i, el){ - if ($.inArray(el, ux) === -1) ux.push(el); - }); - return ux; - } - - // change the row index of a cell - var tweakCellIndex = function(cell) { - var info = cell.index(); - // some cell may not be valid. e.g, #759 - // when using the RowGroup extension, datatables will - // generate the row label and the cells are not part of - // the data thus contain no row/col info - if (info === undefined) - return {row: null, col: null}; - if (server) { - info.row = DT_rows_current[info.row]; - } else { - info.row += 1; - } - return {row: info.row, col: info.column}; - } - - var cleanSelectedValues = function() { - changeInput('rows_selected', []); - changeInput('columns_selected', []); - changeInput('cells_selected', transposeArray2D([]), 'shiny.matrix'); - } - // #828 we should clean the selection on the server-side when the table reloads - cleanSelectedValues(); - - // a flag to indicates if select extension is initialized or not - var flagSelectExt = table.settings()[0]._select !== undefined; - // the Select extension should only be used in the client mode and - // when the selection.mode is set to none - if (data.selection.mode === 'none' && !server && flagSelectExt) { - var updateRowsSelected = function() { - var rows = table.rows({selected: true}); - var selected = []; - $.each(rows.indexes().toArray(), function(i, v) { - selected.push(v + 1); - }); - changeInput('rows_selected', selected); - } - var updateColsSelected = function() { - var columns = table.columns({selected: true}); - changeInput('columns_selected', columns.indexes().toArray()); - } - var updateCellsSelected = function() { - var cells = table.cells({selected: true}); - var selected = []; - cells.every(function() { - var row = this.index().row; - var col = this.index().column; - selected = selected.concat([[row + 1, col]]); - }); - changeInput('cells_selected', transposeArray2D(selected), 'shiny.matrix'); - } - table.on('select deselect', function(e, dt, type, indexes) { - updateRowsSelected(); - updateColsSelected(); - updateCellsSelected(); - }) - } - - var selMode = data.selection.mode, selTarget = data.selection.target; - var selDisable = data.selection.selectable === false; - if (inArray(selMode, ['single', 'multiple'])) { - var selClass = inArray(data.style, ['bootstrap', 'bootstrap4']) ? 'active' : 'selected'; - // selected1: row indices; selected2: column indices - var initSel = function(x) { - if (x === null || typeof x === 'boolean' || selTarget === 'cell') { - return {rows: [], cols: []}; - } else if (selTarget === 'row') { - return {rows: $.makeArray(x), cols: []}; - } else if (selTarget === 'column') { - return {rows: [], cols: $.makeArray(x)}; - } else if (selTarget === 'row+column') { - return {rows: $.makeArray(x.rows), cols: $.makeArray(x.cols)}; - } - } - var selected = data.selection.selected; - var selected1 = initSel(selected).rows, selected2 = initSel(selected).cols; - // selectable should contain either all positive or all non-positive values, not both - // positive values indicate "selectable" while non-positive values means "nonselectable" - // the assertion is performed on R side. (only column indicides could be zero which indicates - // the row name) - var selectable = data.selection.selectable; - var selectable1 = initSel(selectable).rows, selectable2 = initSel(selectable).cols; - - // After users reorder the rows or filter the table, we cannot use the table index - // directly. Instead, we need this function to find out the rows between the two clicks. - // If user filter the table again between the start click and the end click, the behavior - // would be undefined, but it should not be a problem. - var shiftSelRowsIndex = function(start, end) { - var indexes = server ? DT_rows_all : table.rows({ search: 'applied' }).indexes().toArray(); - start = indexes.indexOf(start); end = indexes.indexOf(end); - // if start is larger than end, we need to swap - if (start > end) { - var tmp = end; end = start; start = tmp; - } - return indexes.slice(start, end + 1); - } - - var serverRowIndex = function(clientRowIndex) { - return server ? DT_rows_current[clientRowIndex] : clientRowIndex + 1; - } - - // row, column, or cell selection - var lastClickedRow; - if (inArray(selTarget, ['row', 'row+column'])) { - // Get the current selected rows. It will also - // update the selected1's value based on the current row selection state - // Note we can't put this function inside selectRows() directly, - // the reason is method.selectRows() will override selected1's value but this - // function will add rows to selected1 (keep the existing selection), which is - // inconsistent with column and cell selection. - var selectedRows = function() { - var rows = table.rows('.' + selClass); - var idx = rows.indexes().toArray(); - if (!server) { - selected1 = addOne(idx); - return selected1; - } - idx = idx.map(function(i) { - return DT_rows_current[i]; - }); - selected1 = selMode === 'multiple' ? unique(selected1.concat(idx)) : idx; - return selected1; - } - // Change selected1's value based on selectable1, then refresh the row state - var onlyKeepSelectableRows = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected1 = []; - return; - } - if (selectable1.length === 0) return; - var nonselectable = selectable1[0] <= 0; - if (nonselectable) { - // should make selectable1 positive - selected1 = $(selected1).not(selectable1.map(function(i) { return -i; })).get(); - } else { - selected1 = $(selected1).filter(selectable1).get(); - } - } - // Change selected1's value based on selectable1, then - // refresh the row selection state according to values in selected1 - var selectRows = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableRows(); - table.$('tr.' + selClass).removeClass(selClass); - if (selected1.length === 0) return; - if (server) { - table.rows({page: 'current'}).every(function() { - if (inArray(DT_rows_current[this.index()], selected1)) { - $(this.node()).addClass(selClass); - } - }); - } else { - var selected0 = selected1.map(function(i) { return i - 1; }); - $(table.rows(selected0).nodes()).addClass(selClass); - } - } - table.on('mousedown.dt', 'tbody tr', function(e) { - var $this = $(this), thisRow = table.row(this); - if (selMode === 'multiple') { - if (e.shiftKey && lastClickedRow !== undefined) { - // select or de-select depends on the last clicked row's status - var flagSel = !$this.hasClass(selClass); - var crtClickedRow = serverRowIndex(thisRow.index()); - if (server) { - var rowsIndex = shiftSelRowsIndex(lastClickedRow, crtClickedRow); - // update current page's selClass - rowsIndex.map(function(i) { - var rowIndex = DT_rows_current.indexOf(i); - if (rowIndex >= 0) { - var row = table.row(rowIndex).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - } - }); - // update selected1 - if (flagSel) { - selected1 = unique(selected1.concat(rowsIndex)); - } else { - selected1 = selected1.filter(function(index) { - return !inArray(index, rowsIndex); - }); - } - } else { - // js starts from 0 - shiftSelRowsIndex(lastClickedRow - 1, crtClickedRow - 1).map(function(value) { - var row = table.row(value).nodes().to$(); - var flagRowSel = !row.hasClass(selClass); - if (flagSel === flagRowSel) row.toggleClass(selClass); - }); - } - e.preventDefault(); - } else { - $this.toggleClass(selClass); - } - } else { - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - } else { - table.$('tr.' + selClass).removeClass(selClass); - $this.addClass(selClass); - } - } - if (server && !$this.hasClass(selClass)) { - var id = DT_rows_current[thisRow.index()]; - // remove id from selected1 since its class .selected has been removed - if (inArray(id, selected1)) selected1.splice($.inArray(id, selected1), 1); - } - selectedRows(); // update selected1's value based on selClass - selectRows(false); // only keep the selectable rows - changeInput('rows_selected', selected1); - changeInput('row_last_clicked', serverRowIndex(thisRow.index()), null, null, {priority: 'event'}); - lastClickedRow = serverRowIndex(thisRow.index()); - }); - selectRows(false); // in case users have specified pre-selected rows - // restore selected rows after the table is redrawn (e.g. sort/search/page); - // client-side tables will preserve the selections automatically; for - // server-side tables, we have to *real* row indices are in `selected1` - changeInput('rows_selected', selected1); - if (server) table.on('draw.dt', function(e) { selectRows(false); }); - methods.selectRows = function(selected, ignoreSelectable) { - selected1 = $.makeArray(selected); - selectRows(ignoreSelectable); - changeInput('rows_selected', selected1); - } - } - - if (inArray(selTarget, ['column', 'row+column'])) { - if (selTarget === 'row+column') { - $(table.columns().footer()).css('cursor', 'pointer'); - } - // update selected2's value based on selectable2 - var onlyKeepSelectableCols = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected2 = []; - return; - } - if (selectable2.length === 0) return; - var nonselectable = selectable2[0] <= 0; - if (nonselectable) { - // need to make selectable2 positive - selected2 = $(selected2).not(selectable2.map(function(i) { return -i; })).get(); - } else { - selected2 = $(selected2).filter(selectable2).get(); - } - } - // update selected2 and then - // refresh the col selection state according to values in selected2 - var selectCols = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCols(); - // if selected2 is not a valide index (e.g., larger than the column number) - // table.columns(selected2) will fail and result in a blank table - // this is different from the table.rows(), where the out-of-range indexes - // doesn't affect at all - selected2 = $(selected2).filter(table.columns().indexes()).get(); - table.columns().nodes().flatten().to$().removeClass(selClass); - if (selected2.length > 0) - table.columns(selected2).nodes().flatten().to$().addClass(selClass); - } - var callback = function() { - var colIdx = selTarget === 'column' ? table.cell(this).index().column : - $.inArray(this, table.columns().footer()), - thisCol = $(table.column(colIdx).nodes()); - if (colIdx === -1) return; - if (thisCol.hasClass(selClass)) { - thisCol.removeClass(selClass); - selected2.splice($.inArray(colIdx, selected2), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - thisCol.addClass(selClass); - selected2 = selMode === 'single' ? [colIdx] : unique(selected2.concat([colIdx])); - } - selectCols(false); // update selected2 based on selectable - changeInput('columns_selected', selected2); - } - if (selTarget === 'column') { - $(table.table().body()).on('click.dt', 'td', callback); - } else { - $(table.table().footer()).on('click.dt', 'tr th', callback); - } - selectCols(false); // in case users have specified pre-selected columns - changeInput('columns_selected', selected2); - if (server) table.on('draw.dt', function(e) { selectCols(false); }); - methods.selectColumns = function(selected, ignoreSelectable) { - selected2 = $.makeArray(selected); - selectCols(ignoreSelectable); - changeInput('columns_selected', selected2); - } - } - - if (selTarget === 'cell') { - var selected3 = [], selectable3 = []; - if (selected !== null) selected3 = selected; - if (selectable !== null && typeof selectable !== 'boolean') selectable3 = selectable; - var findIndex = function(ij, sel) { - for (var i = 0; i < sel.length; i++) { - if (ij[0] === sel[i][0] && ij[1] === sel[i][1]) return i; - } - return -1; - } - // Change selected3's value based on selectable3, then refresh the cell state - var onlyKeepSelectableCells = function() { - if (selDisable) { // users can't select; useful when only want backend select - selected3 = []; - return; - } - if (selectable3.length === 0) return; - var nonselectable = selectable3[0][0] <= 0; - var out = []; - if (nonselectable) { - selected3.map(function(ij) { - // should make selectable3 positive - if (findIndex([-ij[0], -ij[1]], selectable3) === -1) { out.push(ij); } - }); - } else { - selected3.map(function(ij) { - if (findIndex(ij, selectable3) > -1) { out.push(ij); } - }); - } - selected3 = out; - } - // Change selected3's value based on selectable3, then - // refresh the cell selection state according to values in selected3 - var selectCells = function(ignoreSelectable) { - if (!ignoreSelectable) onlyKeepSelectableCells(); - table.$('td.' + selClass).removeClass(selClass); - if (selected3.length === 0) return; - if (server) { - table.cells({page: 'current'}).every(function() { - var info = tweakCellIndex(this); - if (findIndex([info.row, info.col], selected3) > -1) - $(this.node()).addClass(selClass); - }); - } else { - selected3.map(function(ij) { - $(table.cell(ij[0] - 1, ij[1]).node()).addClass(selClass); - }); - } - }; - table.on('click.dt', 'tbody td', function() { - var $this = $(this), info = tweakCellIndex(table.cell(this)); - if ($this.hasClass(selClass)) { - $this.removeClass(selClass); - selected3.splice(findIndex([info.row, info.col], selected3), 1); - } else { - if (selMode === 'single') $(table.cells().nodes()).removeClass(selClass); - $this.addClass(selClass); - selected3 = selMode === 'single' ? [[info.row, info.col]] : - unique(selected3.concat([[info.row, info.col]])); - } - selectCells(false); // must call this to update selected3 based on selectable3 - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - }); - selectCells(false); // in case users have specified pre-selected columns - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - - if (server) table.on('draw.dt', function(e) { selectCells(false); }); - methods.selectCells = function(selected, ignoreSelectable) { - selected3 = selected ? selected : []; - selectCells(ignoreSelectable); - changeInput('cells_selected', transposeArray2D(selected3), 'shiny.matrix'); - } - } - } - - // expose some table info to Shiny - var updateTableInfo = function(e, settings) { - // TODO: is anyone interested in the page info? - // changeInput('page_info', table.page.info()); - var updateRowInfo = function(id, modifier) { - var idx; - if (server) { - idx = modifier.page === 'current' ? DT_rows_current : DT_rows_all; - } else { - var rows = table.rows($.extend({ - search: 'applied', - page: 'all' - }, modifier)); - idx = addOne(rows.indexes().toArray()); - } - changeInput('rows' + '_' + id, idx); - }; - updateRowInfo('current', {page: 'current'}); - updateRowInfo('all', {}); - } - table.on('draw.dt', updateTableInfo); - updateTableInfo(); - - // state info - table.on('draw.dt column-visibility.dt', function() { - changeInput('state', table.state()); - }); - changeInput('state', table.state()); - - // search info - var updateSearchInfo = function() { - changeInput('search', table.search()); - if (filterRow) changeInput('search_columns', filterRow.toArray().map(function(td) { - return $(td).find('input').first().val(); - })); - } - table.on('draw.dt', updateSearchInfo); - updateSearchInfo(); - - var cellInfo = function(thiz) { - var info = tweakCellIndex(table.cell(thiz)); - info.value = table.cell(thiz).data(); - return info; - } - // the current cell clicked on - table.on('click.dt', 'tbody td', function() { - changeInput('cell_clicked', cellInfo(this), null, null, {priority: 'event'}); - }) - changeInput('cell_clicked', {}); - - // do not trigger table selection when clicking on links unless they have classes - table.on('mousedown.dt', 'tbody td a', function(e) { - if (this.className === '') e.stopPropagation(); - }); - - methods.addRow = function(data, rowname, resetPaging) { - var n = table.columns().indexes().length, d = n - data.length; - if (d === 1) { - data = rowname.concat(data) - } else if (d !== 0) { - console.log(data); - console.log(table.columns().indexes()); - throw 'New data must be of the same length as current data (' + n + ')'; - }; - table.row.add(data).draw(resetPaging); - } - - methods.updateSearch = function(keywords) { - if (keywords.global !== null) - $(table.table().container()).find('input[type=search]').first() - .val(keywords.global).trigger('input'); - var columns = keywords.columns; - if (!filterRow || columns === null) return; - filterRow.toArray().map(function(td, i) { - var v = typeof columns === 'string' ? columns : columns[i]; - if (typeof v === 'undefined') { - console.log('The search keyword for column ' + i + ' is undefined') - return; - } - $(td).find('input').first().val(v).trigger('input'); - searchColumn(i, v); - }); - table.draw(); - } - - methods.hideCols = function(hide, reset) { - if (reset) table.columns().visible(true, false); - table.columns(hide).visible(false); - } - - methods.showCols = function(show, reset) { - if (reset) table.columns().visible(false, false); - table.columns(show).visible(true); - } - - methods.colReorder = function(order, origOrder) { - table.colReorder.order(order, origOrder); - } - - methods.selectPage = function(page) { - if (table.page.info().pages < page || page < 1) { - throw 'Selected page is out of range'; - }; - table.page(page - 1).draw(false); - } - - methods.reloadData = function(resetPaging, clearSelection) { - // empty selections first if necessary - if (methods.selectRows && inArray('row', clearSelection)) methods.selectRows([]); - if (methods.selectColumns && inArray('column', clearSelection)) methods.selectColumns([]); - if (methods.selectCells && inArray('cell', clearSelection)) methods.selectCells([]); - table.ajax.reload(null, resetPaging); - } - - // update table filters (set new limits of sliders) - methods.updateFilters = function(newProps) { - // loop through each filter in the filter row - filterRow.each(function(i, td) { - var k = i; - if (filterRow.length > newProps.length) { - if (i === 0) return; // first column is row names - k = i - 1; - } - // Update the filters to reflect the updated data. - // Allow "falsy" (e.g. NULL) to signify a no-op. - if (newProps[k]) { - setFilterProps(td, newProps[k]); - } - }); - }; - - table.shinyMethods = methods; - }, - resize: function(el, width, height, instance) { - if (instance.data) this.renderValue(el, instance.data, instance); - - // dynamically adjust height if fillContainer = TRUE - if (instance.fillContainer) - this.fillAvailableHeight(el, height); - - this.adjustWidth(el); - }, - - // dynamically set the scroll body to fill available height - // (used with fillContainer = TRUE) - fillAvailableHeight: function(el, availableHeight) { - - // see how much of the table is occupied by header/footer elements - // and use that to compute a target scroll body height - var dtWrapper = $(el).find('div.dataTables_wrapper'); - var dtScrollBody = $(el).find($('div.dataTables_scrollBody')); - var framingHeight = dtWrapper.innerHeight() - dtScrollBody.innerHeight(); - var scrollBodyHeight = availableHeight - framingHeight; - - // we need to set `max-height` to none as datatables library now sets this - // to a fixed height, disabling the ability to resize to fill the window, - // as it will be set to a fixed 100px under such circumstances, e.g., RStudio IDE, - // or FlexDashboard - // see https://github.com/rstudio/DT/issues/951#issuecomment-1026464509 - dtScrollBody.css('max-height', 'none'); - // set the height - dtScrollBody.height(scrollBodyHeight + 'px'); - }, - - // adjust the width of columns; remove the hard-coded widths on table and the - // scroll header when scrollX/Y are enabled - adjustWidth: function(el) { - var $el = $(el), table = $el.data('datatable'); - if (table) table.columns.adjust(); - $el.find('.dataTables_scrollHeadInner').css('width', '') - .children('table').css('margin-left', ''); - } -}); - - if (!HTMLWidgets.shinyMode) return; - - Shiny.addCustomMessageHandler('datatable-calls', function(data) { - var id = data.id; - var el = document.getElementById(id); - var table = el ? $(el).data('datatable') : null; - if (!table) { - console.log("Couldn't find table with id " + id); - return; - } - - var methods = table.shinyMethods, call = data.call; - if (methods[call.method]) { - methods[call.method].apply(table, call.args); - } else { - console.log("Unknown method " + call.method); - } - }); - -})(); diff --git a/docs/articles/VarinatAnimation-Kolkata_files/datatables-css-0.0.0/datatables-crosstalk.css b/docs/articles/VarinatAnimation-Kolkata_files/datatables-css-0.0.0/datatables-crosstalk.css deleted file mode 100644 index bd1159c8..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/datatables-css-0.0.0/datatables-crosstalk.css +++ /dev/null @@ -1,32 +0,0 @@ -.dt-crosstalk-fade { - opacity: 0.2; -} - -html body div.DTS div.dataTables_scrollBody { - background: none; -} - - -/* -Fix https://github.com/rstudio/DT/issues/563 -If the `table.display` is set to "block" (e.g., pkgdown), the browser will display -datatable objects strangely. The search panel and the page buttons will still be -in full-width but the table body will be "compact" and shorter. -In therory, having this attributes will affect `dom="t"` -with `display: block` users. But in reality, there should be no one. -We may remove the below lines in the future if the upstream agree to have this there. -See https://github.com/DataTables/DataTablesSrc/issues/160 -*/ - -table.dataTable { - display: table; -} - - -/* -When DTOutput(fill = TRUE), it receives a .html-fill-item class (via htmltools::bindFillRole()), which effectively amounts to `flex: 1 1 auto`. That's mostly fine, but the case where `fillContainer=TRUE`+`height:auto`+`flex-basis:auto` and the container (e.g., a bslib::card()) doesn't have a defined height is a bit problematic since the table wants to fit the parent but the parent wants to fit the table, which results pretty small table height (maybe because there is a minimum height somewhere?). It seems better in this case to impose a 400px height default for the table, which we can do by setting `flex-basis` to 400px (the table is still allowed to grow/shrink when the container has an opinionated height). -*/ - -.html-fill-container > .html-fill-item.datatables { - flex-basis: 400px; -} diff --git a/docs/articles/VarinatAnimation-Kolkata_files/dt-core-1.13.6/css/jquery.dataTables.extra.css b/docs/articles/VarinatAnimation-Kolkata_files/dt-core-1.13.6/css/jquery.dataTables.extra.css deleted file mode 100644 index b2dd141f..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/dt-core-1.13.6/css/jquery.dataTables.extra.css +++ /dev/null @@ -1,28 +0,0 @@ -/* Selected rows/cells */ -table.dataTable tr.selected td, table.dataTable td.selected { - background-color: #b0bed9 !important; -} -/* In case of scrollX/Y or FixedHeader */ -.dataTables_scrollBody .dataTables_sizing { - visibility: hidden; -} - -/* The datatables' theme CSS file doesn't define -the color but with white background. It leads to an issue that -when the HTML's body color is set to 'white', the user can't -see the text since the background is white. One case happens in the -RStudio's IDE when inline viewing the DT table inside an Rmd file, -if the IDE theme is set to "Cobalt". - -See https://github.com/rstudio/DT/issues/447 for more info - -This fixes should have little side-effects because all the other elements -of the default theme use the #333 font color. - -TODO: The upstream may use relative colors for both the table background -and the color. It means the table can display well without this patch -then. At that time, we need to remove the below CSS attributes. -*/ -div.datatables { - color: #333; -} diff --git a/docs/articles/VarinatAnimation-Kolkata_files/dt-core-1.13.6/css/jquery.dataTables.min.css b/docs/articles/VarinatAnimation-Kolkata_files/dt-core-1.13.6/css/jquery.dataTables.min.css deleted file mode 100644 index ad59f843..00000000 --- a/docs/articles/VarinatAnimation-Kolkata_files/dt-core-1.13.6/css/jquery.dataTables.min.css +++ /dev/null @@ -1 +0,0 @@ -:root{--dt-row-selected: 13, 110, 253;--dt-row-selected-text: 255, 255, 255;--dt-row-selected-link: 9, 10, 11;--dt-row-stripe: 0, 0, 0;--dt-row-hover: 0, 0, 0;--dt-column-ordering: 0, 0, 0;--dt-html-background: white}:root.dark{--dt-html-background: rgb(33, 37, 41)}table.dataTable td.dt-control{text-align:center;cursor:pointer}table.dataTable td.dt-control:before{display:inline-block;color:rgba(0, 0, 0, 0.5);content:"►"}table.dataTable tr.dt-hasChild td.dt-control:before{content:"▼"}html.dark table.dataTable 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