From bfac057d8fa119a63ea0daf7c66f4ab94109b149 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 20 Oct 2023 10:06:16 +0000 Subject: [PATCH 001/229] Use meson instead of configure for conda install --- .github/workflows/ci-conda.yml | 2 +- .vscode/settings.json | 3 +- meson.build | 40 +++++++++++++++++++ pkgs/sage-conf/pyproject.toml | 7 ++++ pkgs/sage-conf_meson/.gitignore | 7 ++++ pkgs/sage-conf_meson/README.rst | 1 + pkgs/sage-conf_meson/VERSION.txt | 1 + pkgs/sage-conf_meson/_sage_conf | 1 + pkgs/sage-conf_meson/pyproject.toml | 1 + pkgs/sage-conf_meson/sage_conf.py | 6 +++ pkgs/sage-conf_meson/setup.py | 62 +++++++++++++++++++++++++++++ src/doc/en/installation/conda.rst | 5 ++- 12 files changed, 133 insertions(+), 3 deletions(-) create mode 100644 meson.build create mode 100644 pkgs/sage-conf_meson/.gitignore create mode 120000 pkgs/sage-conf_meson/README.rst create mode 100644 pkgs/sage-conf_meson/VERSION.txt create mode 120000 pkgs/sage-conf_meson/_sage_conf create mode 120000 pkgs/sage-conf_meson/pyproject.toml create mode 100644 pkgs/sage-conf_meson/sage_conf.py create mode 100644 pkgs/sage-conf_meson/setup.py diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index e520fa17104..961cd439d18 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -91,7 +91,7 @@ jobs: shell: bash -l {0} run: | # Use --no-deps and pip check below to verify that all necessary dependencies are installed via conda. - pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf ./pkgs/sage-setup + pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf_meson ./pkgs/sage-setup pip install --no-build-isolation --no-deps -v -v -e ./src env: SAGE_NUM_THREADS: 2 diff --git a/.vscode/settings.json b/.vscode/settings.json index b3079a7c4ee..fc6789fe0e6 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -34,5 +34,6 @@ "sagemath", "Cython" ], - "editor.formatOnType": true + "editor.formatOnType": true, + "esbonio.sphinx.confDir": "" } diff --git a/meson.build b/meson.build new file mode 100644 index 00000000000..5cfb720d243 --- /dev/null +++ b/meson.build @@ -0,0 +1,40 @@ +project('sage', 'c') +cc = meson.get_compiler('c') +conf_data = configuration_data() + +conf_data.set('PACKAGE_VERSION', '1.2.3') + +maxima = find_program('maxima', required: true) +conf_data.set('SAGE_MAXIMA', maxima.path()) +# Conda's ecl does not have any problems with Maxima, so nothing needs to be set here: +conf_data.set('SAGE_MAXIMA_FAS', '') + +# Kenzo cannot yet be provided by the system, so we always use the SAGE_LOCAL path for now. +conf_data.set('SAGE_KENZO_FAS', '\'${prefix}\'/lib/ecl/kenzo.fas') + +conf_data.set('SAGE_ARB_LIBRARY', 'arb') + +#ntl = dependency('ntl', required: true) doesn't work, so ask the compiler directly: +ntl = cc.find_library('ntl', required: true) +# It can be found, so we don't have to set anything here: +conf_data.set('NTL_INCDIR', '') +conf_data.set('NTL_LIBDIR', '') + +ecl_config = find_program('ecl-config', required: true) +conf_data.set('SAGE_ECL_CONFIG', ecl_config.path()) + +conf_data.set('SAGE_ARCHFLAGS', 'unset') + +# not needed when using conda, as we then don't build any pc files +conf_data.set('SAGE_PKG_CONFIG_PATH', '') + +openmp = dependency('openmp', required : false) +if openmp.found() + conf_data.set('OPENMP_CFLAGS', '-fopenmp') + conf_data.set('OPENMP_CXXFLAGS', '-fopenmp') +endif + +configure_file(input : 'pkgs/sage-conf_conda/_sage_conf/_conf.py.in', + output : '_conf.py', + configuration : conf_data) + diff --git a/pkgs/sage-conf/pyproject.toml b/pkgs/sage-conf/pyproject.toml index 9787c3bdf00..9b39d5d8816 100644 --- a/pkgs/sage-conf/pyproject.toml +++ b/pkgs/sage-conf/pyproject.toml @@ -1,3 +1,10 @@ [build-system] requires = ["setuptools", "wheel"] build-backend = "setuptools.build_meta" + +[project] +name = "sage-conf" +dynamic = ["version"] + +[tool.setuptools.dynamic] +version = {file = ["VERSION.txt"]} diff --git a/pkgs/sage-conf_meson/.gitignore b/pkgs/sage-conf_meson/.gitignore new file mode 100644 index 00000000000..ff1f6bd336e --- /dev/null +++ b/pkgs/sage-conf_meson/.gitignore @@ -0,0 +1,7 @@ +/_sage_conf/_conf.py +/builddir +/build +/dist +/*.egg-info +/.tox +/bin/sage-env-config diff --git a/pkgs/sage-conf_meson/README.rst b/pkgs/sage-conf_meson/README.rst new file mode 120000 index 00000000000..feda886cd36 --- /dev/null +++ b/pkgs/sage-conf_meson/README.rst @@ -0,0 +1 @@ +../sage-conf/README.rst \ No newline at end of file diff --git a/pkgs/sage-conf_meson/VERSION.txt b/pkgs/sage-conf_meson/VERSION.txt new file mode 100644 index 00000000000..e3fab2e6628 --- /dev/null +++ b/pkgs/sage-conf_meson/VERSION.txt @@ -0,0 +1 @@ +10.2.beta7 diff --git a/pkgs/sage-conf_meson/_sage_conf b/pkgs/sage-conf_meson/_sage_conf new file mode 120000 index 00000000000..d92a91bef8c --- /dev/null +++ b/pkgs/sage-conf_meson/_sage_conf @@ -0,0 +1 @@ +../sage-conf/_sage_conf \ No newline at end of file diff --git a/pkgs/sage-conf_meson/pyproject.toml b/pkgs/sage-conf_meson/pyproject.toml new file mode 120000 index 00000000000..52c93c824e2 --- /dev/null +++ b/pkgs/sage-conf_meson/pyproject.toml @@ -0,0 +1 @@ +../sage-conf/pyproject.toml \ No newline at end of file diff --git a/pkgs/sage-conf_meson/sage_conf.py b/pkgs/sage-conf_meson/sage_conf.py new file mode 100644 index 00000000000..1b09bb76a83 --- /dev/null +++ b/pkgs/sage-conf_meson/sage_conf.py @@ -0,0 +1,6 @@ +from _sage_conf.__main__ import _main + +from builddir._conf import * +from builddir.build_info import CONDA_PREFIX, SAGE_ROOT + +SAGE_LOCAL = CONDA_PREFIX diff --git a/pkgs/sage-conf_meson/setup.py b/pkgs/sage-conf_meson/setup.py new file mode 100644 index 00000000000..34ce471d429 --- /dev/null +++ b/pkgs/sage-conf_meson/setup.py @@ -0,0 +1,62 @@ +import os +import sys +from distutils.command.build_scripts import \ + build_scripts as distutils_build_scripts +from pathlib import Path + +from setuptools import setup +from setuptools.command.build_py import build_py as setuptools_build_py +from setuptools.command.editable_wheel import \ + editable_wheel as setuptools_editable_wheel +from setuptools.errors import SetupError + + +class build_py(setuptools_build_py): + def run(self): + here = Path(__file__).parent + if self.editable_mode: + root = here.parent.parent + else: + raise SetupError('Not supported') + + conda_prefix = os.environ.get('CONDA_PREFIX', '') + if not conda_prefix: + raise SetupError( + 'No conda environment is active. ' + 'See https://doc.sagemath.org/html/en/installation/conda.html on how to get started.' + ) + + builddir = here / "builddir" + cmd = f"cd {root} && meson setup {builddir} --wipe" + print(f"Running {cmd}") + sys.stdout.flush() + if os.system(cmd) != 0: + raise SetupError("configure failed") + + # Write build info + with open(builddir / 'build_info.py', 'w', encoding="utf-8") as build_info: + build_info.write(f'SAGE_ROOT = "{root}"\n') + build_info.write(f'CONDA_PREFIX = "{conda_prefix}"\n') + + +class build_scripts(distutils_build_scripts): + def run(self): + self.distribution.scripts.append(os.path.join('bin', 'sage-env-config')) + if not self.distribution.entry_points: + self.entry_points = self.distribution.entry_points = dict() + distutils_build_scripts.run(self) + + +class editable_wheel(setuptools_editable_wheel): + r""" + Customized so that exceptions raised by our build_py + do not lead to the "Customization incompatible with editable install" message + """ + _safely_run = setuptools_editable_wheel.run_command + + +setup( + cmdclass=dict( + build_py=build_py, build_scripts=build_scripts, editable_wheel=editable_wheel + ) +) diff --git a/src/doc/en/installation/conda.rst b/src/doc/en/installation/conda.rst index 14fe52ad2e2..dd6f02810ab 100644 --- a/src/doc/en/installation/conda.rst +++ b/src/doc/en/installation/conda.rst @@ -138,9 +138,12 @@ Here we assume that you are using a git checkout. - Install the build prerequisites and the Sage library:: - $ pip install --no-build-isolation -v -v --editable ./pkgs/sage-conf_conda ./pkgs/sage-setup + $ pip install --no-build-isolation -v -v --editable ./pkgs/sage-conf_meson ./pkgs/sage-setup $ pip install --no-build-isolation --config-settings editable_mode=compat -v -v --editable ./src + In case of errors, try to use `sage-conf_conda` instead of `sage-conf_meson`, + and please report the problem by opening an issue on GitHub. + - Verify that Sage has been installed:: $ sage -c 'print(version())' From 96940465d99ac7215e5382bc56527ceb941dcd4e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 20 Oct 2023 11:10:19 +0000 Subject: [PATCH 002/229] remove editable wheel customization --- pkgs/sage-conf_meson/setup.py | 12 +----------- 1 file changed, 1 insertion(+), 11 deletions(-) diff --git a/pkgs/sage-conf_meson/setup.py b/pkgs/sage-conf_meson/setup.py index 34ce471d429..f2bbe98b8ff 100644 --- a/pkgs/sage-conf_meson/setup.py +++ b/pkgs/sage-conf_meson/setup.py @@ -6,8 +6,6 @@ from setuptools import setup from setuptools.command.build_py import build_py as setuptools_build_py -from setuptools.command.editable_wheel import \ - editable_wheel as setuptools_editable_wheel from setuptools.errors import SetupError @@ -47,16 +45,8 @@ def run(self): distutils_build_scripts.run(self) -class editable_wheel(setuptools_editable_wheel): - r""" - Customized so that exceptions raised by our build_py - do not lead to the "Customization incompatible with editable install" message - """ - _safely_run = setuptools_editable_wheel.run_command - - setup( cmdclass=dict( - build_py=build_py, build_scripts=build_scripts, editable_wheel=editable_wheel + build_py=build_py, build_scripts=build_scripts ) ) From 376742a50e9807269cdaa4476ea59ca587d8a8fd Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 20 Oct 2023 11:11:25 +0000 Subject: [PATCH 003/229] remove configure from conda ci --- .github/workflows/ci-conda.yml | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index 961cd439d18..78af8eed170 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -77,15 +77,9 @@ jobs: conda info conda list - - name: Configure + - name: Bootstrap shell: bash -l {0} - continue-on-error: true - run: | - ./bootstrap - echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json" - ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX --enable-system-site-packages $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt --exclude rpy2); do echo --with-system-$pkg=force; done) - echo "::remove-matcher owner=configure-system-package-warning::" - echo "::remove-matcher owner=configure-system-package-error::" + run: ./bootstrap - name: Build shell: bash -l {0} From 84ff7ffe0d5a9e06bd5a20b41ef59b26f92e933b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 20 Oct 2023 12:44:23 +0000 Subject: [PATCH 004/229] Revert "remove editable wheel customization" This reverts commit 96940465d99ac7215e5382bc56527ceb941dcd4e. --- pkgs/sage-conf_meson/setup.py | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/pkgs/sage-conf_meson/setup.py b/pkgs/sage-conf_meson/setup.py index f2bbe98b8ff..34ce471d429 100644 --- a/pkgs/sage-conf_meson/setup.py +++ b/pkgs/sage-conf_meson/setup.py @@ -6,6 +6,8 @@ from setuptools import setup from setuptools.command.build_py import build_py as setuptools_build_py +from setuptools.command.editable_wheel import \ + editable_wheel as setuptools_editable_wheel from setuptools.errors import SetupError @@ -45,8 +47,16 @@ def run(self): distutils_build_scripts.run(self) +class editable_wheel(setuptools_editable_wheel): + r""" + Customized so that exceptions raised by our build_py + do not lead to the "Customization incompatible with editable install" message + """ + _safely_run = setuptools_editable_wheel.run_command + + setup( cmdclass=dict( - build_py=build_py, build_scripts=build_scripts + build_py=build_py, build_scripts=build_scripts, editable_wheel=editable_wheel ) ) From 885e2b4cb478785702a3e1d5aa48ececefe0caf6 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 20 Oct 2023 12:48:14 +0000 Subject: [PATCH 005/229] split setup and conf for cleaner display --- .github/workflows/ci-conda.yml | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index c859b7d68e6..ccafb4af359 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -74,7 +74,12 @@ jobs: shell: bash -l {0} run: | # Use --no-deps and pip check below to verify that all necessary dependencies are installed via conda. - pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf_meson ./pkgs/sage-setup + echo "::group::sage-setup" + pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-setup + echo "::endgroup::" + echo "::group::sage-conf" + pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf_meson + echo "::endgroup::" pip install --no-build-isolation --no-deps --config-settings editable_mode=compat -v -v -e ./src env: SAGE_NUM_THREADS: 2 From f755a8eb5b0b3b04855bde18012cc71a86b7d460 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 20 Oct 2023 14:01:01 +0000 Subject: [PATCH 006/229] add meson to conda env --- bootstrap-conda | 1 + 1 file changed, 1 insertion(+) diff --git a/bootstrap-conda b/bootstrap-conda index faa29513db4..ba007779b8a 100755 --- a/bootstrap-conda +++ b/bootstrap-conda @@ -95,6 +95,7 @@ echo >&2 $0:$LINENO: generate conda environment files for pkg in $BOOTSTRAP_SYSTEM_PACKAGES; do echo " - $pkg" done + echo " - meson" ) > environment-template.yml ( sed 's/name: sage-build/name: sage/' environment-template.yml From 4406868d891c9dd57f9dc8d6a633fb79ac1e3033 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 21 Oct 2023 23:32:48 +0800 Subject: [PATCH 007/229] Fix style in conda docs MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Matthias Köppe --- src/doc/en/installation/conda.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/doc/en/installation/conda.rst b/src/doc/en/installation/conda.rst index 009c71946a7..8f1712ffa33 100644 --- a/src/doc/en/installation/conda.rst +++ b/src/doc/en/installation/conda.rst @@ -142,7 +142,7 @@ Here we assume that you are using a git checkout. $ pip install --no-build-isolation -v -v --editable ./pkgs/sage-conf_meson ./pkgs/sage-setup $ pip install --no-build-isolation --config-settings editable_mode=compat -v -v --editable ./src - In case of errors, try to use `sage-conf_conda` instead of `sage-conf_meson`, + In case of errors, try to use ``sage-conf_conda`` instead of ``sage-conf_meson``, and please report the problem by opening an issue on GitHub. - Verify that Sage has been installed:: From c0cdb5f95e1816cd31807c6687f7e6085e128b37 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 21 Oct 2023 15:44:14 +0000 Subject: [PATCH 008/229] add meson only in src env files --- bootstrap-conda | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bootstrap-conda b/bootstrap-conda index ba007779b8a..d50e39499cc 100755 --- a/bootstrap-conda +++ b/bootstrap-conda @@ -95,10 +95,10 @@ echo >&2 $0:$LINENO: generate conda environment files for pkg in $BOOTSTRAP_SYSTEM_PACKAGES; do echo " - $pkg" done - echo " - meson" ) > environment-template.yml ( sed 's/name: sage-build/name: sage/' environment-template.yml + echo " - meson" echo " # Additional packages providing all dependencies for the Sage library" for pkg in $SAGELIB_SYSTEM_PACKAGES; do echo " - $pkg" From b40831138e67581b2dfb8639bdd42988c6d73b16 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 21 Oct 2023 15:49:09 +0000 Subject: [PATCH 009/229] keep configure around in the ci --- .github/workflows/ci-conda.yml | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index ccafb4af359..2d29839367a 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -94,6 +94,14 @@ jobs: shell: bash -l {0} run: ./sage -t --all -p0 + # We keep this step for now to make sure that the configure-based setup still works. + - name: Test configure + run: + echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json" + ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX --enable-system-site-packages $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt --exclude rpy2); do echo --with-system-$pkg=force; done) + echo "::remove-matcher owner=configure-system-package-warning::" + echo "::remove-matcher owner=configure-system-package-error::" + - name: Print logs if: always() run: | From f6f27d97c6183da3376ab36545d179e44f2ac7ac Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 21 Oct 2023 16:21:18 +0000 Subject: [PATCH 010/229] fix conda-ci --- .github/workflows/ci-conda.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index 2d29839367a..df331cf99c0 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -96,7 +96,8 @@ jobs: # We keep this step for now to make sure that the configure-based setup still works. - name: Test configure - run: + shell: bash -l {0} + run: | echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json" ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX --enable-system-site-packages $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt --exclude rpy2); do echo --with-system-$pkg=force; done) echo "::remove-matcher owner=configure-system-package-warning::" From b4ff544442da45e8119783e7a7a2178f03453ab8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 24 Oct 2023 02:18:36 +0000 Subject: [PATCH 011/229] Compile categories with meson --- generate-meson.py | 52 +++++++ meson.build | 20 ++- src/doc/en/developer/meson.rst | 27 ++++ src/meson.build | 59 +++++++ src/sage/categories/__init__.py | 0 src/sage/categories/meson.build | 207 +++++++++++++++++++++++++ src/sage/cpython/atexit.pyx | 29 ---- src/sage/cpython/dict_del_by_value.pyx | 2 +- src/sage/cpython/meson.build | 21 +++ src/sage/libs/gmp/meson.build | 11 ++ src/sage/misc/__init__.py | 0 src/sage/misc/meson.build | 114 ++++++++++++++ src/sage/misc/sage_ostools.pyx | 41 ----- src/sage/structure/meson.build | 48 ++++++ 14 files changed, 559 insertions(+), 72 deletions(-) create mode 100644 generate-meson.py create mode 100644 src/doc/en/developer/meson.rst create mode 100644 src/meson.build create mode 100644 src/sage/categories/__init__.py create mode 100644 src/sage/categories/meson.build create mode 100644 src/sage/cpython/meson.build create mode 100644 src/sage/libs/gmp/meson.build create mode 100644 src/sage/misc/__init__.py create mode 100644 src/sage/misc/meson.build create mode 100644 src/sage/structure/meson.build diff --git a/generate-meson.py b/generate-meson.py new file mode 100644 index 00000000000..66959e8ceb7 --- /dev/null +++ b/generate-meson.py @@ -0,0 +1,52 @@ +# Small script that generates a meson.build file in the given folder. +# The generated build file contains all python files as `install_sources` and all cython files as `extension_module` + +import argparse +import sys +from pathlib import Path + +parser = argparse.ArgumentParser(description='Generate meson.build file for a given folder.') +parser.add_argument('folder', type=str, nargs='?', default='.', + help='folder for which the meson.build file will be generated') +parser.add_argument('--dry-run', '-n', action='store_true', + help='do not write any files, just print the output') +parser.add_argument('--force', '-f', action='store_true', + help='overwrite existing meson.build file') + +args = parser.parse_args() + +folder = Path(args.folder) +dry_run = args.dry_run +force = args.force + +if not folder.is_dir(): + print(f'Error: {folder} is not a directory') + sys.exit(1) +folder_rel_to_src = folder.relative_to('src') + +python_files = list(folder.glob('*.py')) +cython_files = list(folder.glob('*.pyx')) + +if not python_files and not cython_files: + print(f'Error: {folder} does not contain any python or cython files') + sys.exit(1) + +meson_build_path = folder / 'meson.build' +if not dry_run and not force and meson_build_path.exists(): + print(f'Error: {meson_build_path} already exists, use --force to overwrite') + sys.exit(1) + +with open(meson_build_path, 'w') if not dry_run else sys.stdout as meson_build: + meson_build.write('py.install_sources(\n') + for file in python_files: + meson_build.write(f" '{file.name}',\n") + meson_build.write(f" subdir: '{folder_rel_to_src}',\n") + meson_build.write(')\n\n') + + meson_build.write('py.extension_module(\n') + for file in cython_files: + meson_build.write(f" '{file.name}',\n") + meson_build.write(f" subdir: '{folder_rel_to_src}',\n") + meson_build.write(' install: true,\n') + meson_build.write(' dependencies: py_dep,\n') + meson_build.write(')\n') diff --git a/meson.build b/meson.build index 5cfb720d243..1c9e28b8fe4 100644 --- a/meson.build +++ b/meson.build @@ -1,5 +1,22 @@ -project('sage', 'c') +project( + 'SageMath', + ['c', 'cpp', 'cython'], + version: '10.2.beta8', + license: 'GPL v3', + meson_version: '>= 1.2.0', +) + +# Python module +# https://mesonbuild.com/Python-module.html +py = import('python').find_installation(pure: false) +py_dep = py.dependency() + +# Compilers cc = meson.get_compiler('c') +cpp = meson.get_compiler('cpp') +cython = meson.get_compiler('cython') + +# Generate the configuration file conf_data = configuration_data() conf_data.set('PACKAGE_VERSION', '1.2.3') @@ -38,3 +55,4 @@ configure_file(input : 'pkgs/sage-conf_conda/_sage_conf/_conf.py.in', output : '_conf.py', configuration : conf_data) +subdir('src') diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst new file mode 100644 index 00000000000..e9dd1bf21df --- /dev/null +++ b/src/doc/en/developer/meson.rst @@ -0,0 +1,27 @@ +Assume we're starting from a clean repo and a fully set up conda environment:: + + ```bash + ./bootstrap-conda + mamba env create --file src/environment-dev-3.11.yml --name sage-dev + conda activate sage-dev + ``` + +Now to configure the project, we need to run the following commands:: + + ```bash + ./bootstrap + meson setup builddir + ``` + +This will create a build directory ``builddir`` that will hold the build artifacts. +To compile the project, run the following command:: + + ```bash + meson compile -C builddir + ``` + +Installing the project is done with the following command:: + + ```bash + meson install -C builddir + ``` diff --git a/src/meson.build b/src/meson.build new file mode 100644 index 00000000000..ca2b1a5e846 --- /dev/null +++ b/src/meson.build @@ -0,0 +1,59 @@ +# Setup dependencies that are needed by many modules + +# Meson currently ignores include_directories for Cython modules, so we +# have to add them manually. +# https://github.com/mesonbuild/meson/issues/9562 +add_project_arguments('-I', meson.current_source_dir(), language : 'cython') + +inc_numpy = run_command(py, + [ + '-c', + ''' +import numpy +print(numpy.get_include()) + '''.strip() + ], + check: true + ).stdout().strip() +numpy = declare_dependency( + include_directories: inc_numpy, +) + +inc_cysignals = run_command(py, + [ + '-c', + ''' +import cysignals +print(cysignals.__file__.replace('__init__.py', '')) + '''.strip() + ], + check: true + ).stdout().strip() +cysignals = declare_dependency( + include_directories: inc_cysignals, +) + +inc_gmpy2 = run_command(py, + [ + '-c', + ''' +import gmpy2 +print(gmpy2.__file__.replace('__init__.py', '')) + '''.strip() + ], + check: true + ).stdout().strip() +gmpy2 = declare_dependency( + include_directories: inc_gmpy2, +) + +inc_cpython = include_directories('sage/cpython') +inc_rings = include_directories('sage/rings') +inc_src = include_directories('.') + +# Submodules +subdir('sage/cpython') +subdir('sage/libs/gmp') +subdir('sage/misc') +subdir('sage/structure') +subdir('sage/categories') diff --git a/src/sage/categories/__init__.py b/src/sage/categories/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build new file mode 100644 index 00000000000..76fd199555b --- /dev/null +++ b/src/sage/categories/meson.build @@ -0,0 +1,207 @@ +py.install_sources( + 'homset.py', + 'filtered_modules_with_basis.py', + 'modules_with_basis.py', + 'finitely_generated_lie_conformal_algebras.py', + 'bialgebras.py', + 'lambda_bracket_algebras_with_basis.py', + 'tutorial.py', + 'highest_weight_crystals.py', + 'signed_tensor.py', + 'principal_ideal_domains.py', + 'matrix_algebras.py', + 'additive_semigroups.py', + 'graded_bialgebras.py', + 'groups.py', + 'partially_ordered_monoids.py', + 'commutative_additive_groups.py', + 'algebra_modules.py', + 'loop_crystals.py', + 'additive_monoids.py', + 'g_sets.py', + 'semirings.py', + 'regular_crystals.py', + 'realizations.py', + 'finite_dimensional_coalgebras_with_basis.py', + 'dual.py', + 'graded_modules_with_basis.py', + 'sets_with_partial_maps.py', + 'lie_groups.py', + 'semisimple_algebras.py', + 'magmas_and_additive_magmas.py', + 'graphs.py', + 'category_types.py', + 'sets_with_grading.py', + 'complex_reflection_groups.py', + 'topological_spaces.py', + 'coalgebras_with_basis.py', + 'finite_fields.py', + 'isomorphic_objects.py', + 'right_modules.py', + 'finite_dimensional_modules_with_basis.py', + 'algebras.py', + 'associative_algebras.py', + 'coxeter_group_algebras.py', + 'hopf_algebras_with_basis.py', + 'distributive_magmas_and_additive_magmas.py', + 'algebra_ideals.py', + 'simplicial_complexes.py', + 'algebras_with_basis.py', + 'additive_groups.py', + 'super_hopf_algebras_with_basis.py', + 'graded_algebras.py', + 'hecke_modules.py', + 'j_trivial_semigroups.py', + 'finite_dimensional_lie_algebras_with_basis.py', + 'finite_weyl_groups.py', + 'complex_reflection_or_generalized_coxeter_groups.py', + 'triangular_kac_moody_algebras.py', + 'function_fields.py', + 'supercommutative_algebras.py', + 'schemes.py', + 'lie_algebras_with_basis.py', + 'modules.py', + 'groupoid.py', + 'graded_bialgebras_with_basis.py', + 'super_modules.py', + 'poor_man_map.py', + 'finite_dimensional_algebras_with_basis.py', + 'vector_bundles.py', + 'finite_dimensional_semisimple_algebras_with_basis.py', + 'commutative_additive_semigroups.py', + 'unital_algebras.py', + 'finite_dimensional_bialgebras_with_basis.py', + 'graded_algebras_with_basis.py', + 'integral_domains.py', + 'magmas.py', + 'modular_abelian_varieties.py', + 'unique_factorization_domains.py', + 'monoids.py', + 'quotient_fields.py', + 'commutative_algebra_ideals.py', + 'all.py', + 'monoid_algebras.py', + 'additive_magmas.py', + 'graded_modules.py', + 'filtered_algebras_with_basis.py', + 'finite_lattice_posets.py', + 'category.py', + 'all__sagemath_objects.py', + 'finite_groups.py', + 'commutative_algebras.py', + 'discrete_valuation.py', + 'commutative_rings.py', + 'graded_lie_algebras.py', + 'group_algebras.py', + 'covariant_functorial_construction.py', + 'bialgebras_with_basis.py', + 'simplicial_sets.py', + 'filtered_hopf_algebras_with_basis.py', + 'commutative_additive_monoids.py', + 'subobjects.py', + 'coxeter_groups.py', + 'pointed_sets.py', + 'weyl_groups.py', + 'super_algebras.py', + 'super_algebras_with_basis.py', + 'homsets.py', + 'with_realizations.py', + 'semigroups.py', + 'category_with_axiom.py', + 'supercrystals.py', + 'finitely_generated_semigroups.py', + 'aperiodic_semigroups.py', + 'bimodules.py', + 'primer.py', + 'basic.py', + 'regular_supercrystals.py', + 'classical_crystals.py', + 'finite_dimensional_graded_lie_algebras_with_basis.py', + 'posets.py', + 'finitely_generated_lambda_bracket_algebras.py', + 'algebra_functor.py', + 'finite_monoids.py', + 'drinfeld_modules.py', + 'finite_semigroups.py', + 'graded_hopf_algebras_with_basis.py', + 'finite_sets.py', + 'permutation_groups.py', + 'enumerated_sets.py', + 'finite_dimensional_nilpotent_lie_algebras_with_basis.py', + 'generalized_coxeter_groups.py', + 'super_modules_with_basis.py', + 'finite_crystals.py', + 'lambda_bracket_algebras.py', + 'vector_spaces.py', + 'tensor.py', + 'lie_conformal_algebras_with_basis.py', + 'polyhedra.py', + 'lie_conformal_algebras.py', + 'infinite_enumerated_sets.py', + 'ring_ideals.py', + 'lattice_posets.py', + 'l_trivial_semigroups.py', + 'pushout.py', + 'number_fields.py', + 'finite_coxeter_groups.py', + 'division_rings.py', + 'cw_complexes.py', + 'finite_enumerated_sets.py', + 'fields.py', + 'filtered_algebras.py', + 'lie_algebras.py', + 'shephard_groups.py', + 'chain_complexes.py', + 'finite_dimensional_hopf_algebras_with_basis.py', + 'graded_lie_algebras_with_basis.py', + 'affine_weyl_groups.py', + 'cartesian_product.py', + 'kac_moody_algebras.py', + 'magmatic_algebras.py', + 'quantum_group_representations.py', + 'finitely_generated_magmas.py', + 'facade_sets.py', + 'crystals.py', + 'hopf_algebras.py', + 'finite_posets.py', + 'super_lie_conformal_algebras.py', + 'commutative_ring_ideals.py', + 'graded_lie_conformal_algebras.py', + 'objects.py', + 'graded_coalgebras_with_basis.py', + 'finite_permutation_groups.py', + 'coalgebras.py', + 'complete_discrete_valuation.py', + 'r_trivial_semigroups.py', + 'subquotients.py', + 'finite_complex_reflection_groups.py', + 'h_trivial_semigroups.py', + 'graded_hopf_algebras.py', + 'metric_spaces.py', + 'quotients.py', + 'filtered_modules.py', + 'domains.py', + 'rings.py', + 'left_modules.py', + 'sets_cat.py', + 'graded_coalgebras.py', + 'euclidean_domains.py', + 'manifolds.py', + 'rngs.py', + 'gcd_domains.py', + subdir: 'sage/categories', +) + +py.extension_module( + 'category_singleton.pyx', + 'functor.pyx', + 'category_cy_helper.pyx', + 'morphism.pyx', + 'coercion_methods.pyx', + 'map.pyx', + 'action.pyx', + subdir: 'sage/categories', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep], +) diff --git a/src/sage/cpython/atexit.pyx b/src/sage/cpython/atexit.pyx index e5a82735137..feed692e696 100644 --- a/src/sage/cpython/atexit.pyx +++ b/src/sage/cpython/atexit.pyx @@ -148,44 +148,15 @@ from cpython.ref cimport PyObject # Implement "_atexit_callbacks()" for each supported python version cdef extern from *: """ - #if PY_VERSION_HEX >= 0x030a0000 - /********** Python 3.10 **********/ #define Py_BUILD_CORE #undef _PyGC_FINALIZED #include "internal/pycore_interp.h" #include "internal/pycore_pystate.h" - #if PY_VERSION_HEX >= 0x030c0000 - // struct atexit_callback was renamed in 3.12 to atexit_py_callback - #define atexit_callback atexit_py_callback - #endif static atexit_callback ** _atexit_callbacks(PyObject *self) { PyInterpreterState *interp = _PyInterpreterState_GET(); struct atexit_state state = interp->atexit; return state.callbacks; } - #else - /********** Python < 3.10 **********/ - /* Internal structures defined in the CPython source in - * Modules/atexitmodule.c and subject to (but unlikely to) change. Watch - * https://bugs.python.org/issue32082 for a request to (eventually) - * re-expose more of the atexit module's internals to Python - * typedef struct - */ - typedef struct { - PyObject *func; - PyObject *args; - PyObject *kwargs; - } atexit_callback; - typedef struct { - atexit_callback **atexit_callbacks; - int ncallbacks; - int callback_len; - } atexitmodule_state; - static atexit_callback ** _atexit_callbacks(PyObject *self) { - atexitmodule_state *state = PyModule_GetState(self); - return state->atexit_callbacks; - } - #endif """ ctypedef struct atexit_callback: PyObject* func diff --git a/src/sage/cpython/dict_del_by_value.pyx b/src/sage/cpython/dict_del_by_value.pyx index 19dd2bb2731..11c34019729 100644 --- a/src/sage/cpython/dict_del_by_value.pyx +++ b/src/sage/cpython/dict_del_by_value.pyx @@ -48,7 +48,7 @@ cdef extern from "dict_internal.h": # dk_lookup was removed in python 3.11 -DEF HAS_DK_LOOKUP = PY_VERSION_HEX < 0x30b0000 +DEF HAS_DK_LOOKUP = False IF HAS_DK_LOOKUP: diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build new file mode 100644 index 00000000000..91d0cdabbd1 --- /dev/null +++ b/src/sage/cpython/meson.build @@ -0,0 +1,21 @@ +py.install_sources( + 'all.py', + '__init__.py', + '_py2_random.py', + subdir: 'sage/cpython', +) + +py.extension_module( + 'debug.pyx', + 'getattr.pyx', + 'atexit.pyx', + 'wrapperdescr.pyx', + 'builtin_types.pyx', + 'cython_metaclass.pyx', + 'dict_del_by_value.pyx', + 'string.pyx', + 'type.pyx', + subdir: 'sage/cpython', + install: true, + dependencies: py_dep, +) diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build new file mode 100644 index 00000000000..8618c3972ff --- /dev/null +++ b/src/sage/libs/gmp/meson.build @@ -0,0 +1,11 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/gmp', +) + +py.extension_module( + 'pylong.pyx', + subdir: 'sage/libs/gmp', + install: true, + dependencies: py_dep, +) diff --git a/src/sage/misc/__init__.py b/src/sage/misc/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build new file mode 100644 index 00000000000..7965a637fab --- /dev/null +++ b/src/sage/misc/meson.build @@ -0,0 +1,114 @@ +py.install_sources( + 'sageinspect.py', + 'banner.py', + 'timing.py', + 'method_decorator.py', + 'sage_eval.py', + 'package.py', + 'temporary_file.py', + 'defaults.py', + 'compat.py', + 'rest_index_of_methods.py', + 'sage_input.py', + 'python.py', + 'sagedoc_conf.py', + 'replace_dot_all.py', + 'cython.py', + 'element_with_label.py', + 'sage_timeit.py', + 'latex.py', + 'lazy_format.py', + 'converting_dict.py', + 'map_threaded.py', + 'remote_file.py', + 'bindable_class.py', + 'dev_tools.py', + 'unknown.py', + 'sh.py', + 'verbose.py', + 'sage_unittest.py', + 'functional.py', + 'superseded.py', + 'all.py', + 'pager.py', + 'all__sagemath_objects.py', + 'edit_module.py', + 'latex_macros.py', + 'explain_pickle.py', + 'html.py', + 'classgraph.py', + 'namespace_package.py', + 'random_testing.py', + 'viewer.py', + 'table.py', + 'profiler.py', + 'object_multiplexer.py', + 'benchmark.py', + 'multireplace.py', + 'gperftools.py', + 'trace.py', + 'test_class_pickling.py', + 'mrange.py', + 'decorators.py', + 'func_persist.py', + 'copying.py', + 'prandom.py', + 'misc.py', + 'sagedoc.py', + 'test_nested_class.py', + 'repr.py', + 'mathml.py', + 'sphinxify.py', + 'flatten.py', + 'messaging.py', + 'package_dir.py', + 'call.py', + 'abstract_method.py', + 'lazy_import_cache.py', + 'dist.py', + 'all__sagemath_repl.py', + 'all__sagemath_environment.py', + 'inline_fortran.py', + 'proof.py', + 'latex_standalone.py', + subdir: 'sage/misc', +) + +py.extension_module( + 'c3_controlled.pyx', + 'lazy_import.pyx', + 'fpickle.pyx', + 'nested_class.pyx', + 'persist.pyx', + 'binary_tree.pyx', + 'parser.pyx', + 'lazy_list.pyx', + 'function_mangling.pyx', + 'classcall_metaclass.pyx', + 'randstate.pyx', + 'citation.pyx', + 'lazy_string.pyx', + 'search.pyx', + 'stopgap.pyx', + 'weak_dict.pyx', + 'misc_c.pyx', + 'instancedoc.pyx', + 'fast_methods.pyx', + 'sage_ostools.pyx', + 'pickle_old.pyx', + 'inherit_comparison.pyx', + 'derivative.pyx', + 'session.pyx', + 'allocator.pyx', + 'lazy_attribute.pyx', + 'callable_dict.pyx', + 'constant_function.pyx', + 'c3.pyx', + 'reset.pyx', + 'sage_timeit_class.pyx', + 'cachefunc.pyx', + subdir: 'sage/misc', + include_directories: [inc_cpython], + install: true, + dependencies: [py_dep, cysignals], +) diff --git a/src/sage/misc/sage_ostools.pyx b/src/sage/misc/sage_ostools.pyx index 678b6731b82..a291cd45e1b 100644 --- a/src/sage/misc/sage_ostools.pyx +++ b/src/sage/misc/sage_ostools.pyx @@ -304,44 +304,3 @@ cdef class redirection: if self.close_dest: self.dest_file.close() self.dest_fd = -1 - - -IF PY_PLATFORM == 'cygwin': - from libc.stddef cimport wchar_t - - cdef extern from "Windows.h": - int SetDllDirectoryW(wchar_t* lpPathName) - - cdef extern from "sqlite3.h": - int sqlite3_initialize() - - def fix_for_ticket_30157(): - """ - Cygwin-only workaround for an issue caused by the sqlite3 library. - - See :trac:`30157`. - - The issue here is that when the sqlite3 library is first initialized - it modifies Windows' default DLL search path order, which can possibly - break the correct search path for subsequent DLL loads. - - This workaround ensures that the sqlite3 library is initialized very - early on (this does not add any significant overhead) and then - immediately undoes its deleterious effects. In particular, calling - SetDllDirectoryW(NULL) restores the default DLL search path. - - To be clear, there's no reason sqlite3 needs this to function - correctly; it's just a poorly-considered hack that attempted to work - around a problem that doesn't affect us. - - Returns 0 if it succeeeds or a non-zero value if not. - """ - - ret = sqlite3_initialize() - - if ret != 0: - # Library initialization failed for some reason - return ret - - # SetDllDirectory returns 1 if it succeeds. - return not SetDllDirectoryW(NULL) diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build new file mode 100644 index 00000000000..ef6c0218f6a --- /dev/null +++ b/src/sage/structure/meson.build @@ -0,0 +1,48 @@ +py.install_sources( + 'coerce_exceptions.py', + 'unique_representation.py', + 'nonexact.py', + 'global_options.py', + 'sequence.py', + 'all.py', + 'factorization_integer.py', + 'gens_py.py', + 'sage_object_test.py', + 'dynamic_class.py', + 'support_view.py', + '__init__.py', + 'indexed_generators.py', + 'factorization.py', + 'test_factory.py', + 'list_clone_timings.py', + 'formal_sum.py', + 'set_factories.py', + 'set_factories_example.py', + subdir: 'sage/structure', +) + +py.extension_module( + 'list_clone_timings_cy.pyx', + 'sage_object.pyx', + 'parent_base.pyx', + 'debug_options.pyx', + 'coerce.pyx', + 'factory.pyx', + 'parent_old.pyx', + 'coerce_maps.pyx', + 'category_object.pyx', + 'richcmp.pyx', + 'element.pyx', + 'list_clone_demo.pyx', + 'parent_gens.pyx', + 'coerce_dict.pyx', + 'mutability.pyx', + 'element_wrapper.pyx', + 'coerce_actions.pyx', + 'parent.pyx', + 'list_clone.pyx', + subdir: 'sage/structure', + install: true, + include_directories: [inc_cpython, inc_rings, inc_src], + dependencies: [py_dep, gmpy2, cysignals], +) From 26cca827eba76cdaeea195f1af7d0511839462ab Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 24 Oct 2023 02:45:00 +0000 Subject: [PATCH 012/229] Restore atexit --- src/sage/cpython/atexit.pyx | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/src/sage/cpython/atexit.pyx b/src/sage/cpython/atexit.pyx index feed692e696..e5a82735137 100644 --- a/src/sage/cpython/atexit.pyx +++ b/src/sage/cpython/atexit.pyx @@ -148,15 +148,44 @@ from cpython.ref cimport PyObject # Implement "_atexit_callbacks()" for each supported python version cdef extern from *: """ + #if PY_VERSION_HEX >= 0x030a0000 + /********** Python 3.10 **********/ #define Py_BUILD_CORE #undef _PyGC_FINALIZED #include "internal/pycore_interp.h" #include "internal/pycore_pystate.h" + #if PY_VERSION_HEX >= 0x030c0000 + // struct atexit_callback was renamed in 3.12 to atexit_py_callback + #define atexit_callback atexit_py_callback + #endif static atexit_callback ** _atexit_callbacks(PyObject *self) { PyInterpreterState *interp = _PyInterpreterState_GET(); struct atexit_state state = interp->atexit; return state.callbacks; } + #else + /********** Python < 3.10 **********/ + /* Internal structures defined in the CPython source in + * Modules/atexitmodule.c and subject to (but unlikely to) change. Watch + * https://bugs.python.org/issue32082 for a request to (eventually) + * re-expose more of the atexit module's internals to Python + * typedef struct + */ + typedef struct { + PyObject *func; + PyObject *args; + PyObject *kwargs; + } atexit_callback; + typedef struct { + atexit_callback **atexit_callbacks; + int ncallbacks; + int callback_len; + } atexitmodule_state; + static atexit_callback ** _atexit_callbacks(PyObject *self) { + atexitmodule_state *state = PyModule_GetState(self); + return state->atexit_callbacks; + } + #endif """ ctypedef struct atexit_callback: PyObject* func From b2e70465f840166b9365c7c64169e1a40fd5e555 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 24 Oct 2023 17:48:27 +0000 Subject: [PATCH 013/229] improve installation using meson-python --- .gitignore | 3 + bootstrap-conda | 3 +- generate-meson.py | 19 +- meson.build | 29 ++- pyproject.toml | 6 + src/doc/en/developer/meson.rst | 11 +- src/meson.build | 7 +- src/sage/categories/meson.build | 367 ++++++++++++++++---------------- src/sage/cpython/meson.build | 37 ++-- src/sage/libs/gmp/meson.build | 19 +- src/sage/meson.build | 5 + src/sage/misc/meson.build | 201 ++++++++--------- src/sage/structure/meson.build | 80 +++---- 13 files changed, 438 insertions(+), 349 deletions(-) create mode 100644 pyproject.toml create mode 100644 src/sage/meson.build diff --git a/.gitignore b/.gitignore index 43f58abcafe..aa04337d12a 100644 --- a/.gitignore +++ b/.gitignore @@ -284,3 +284,6 @@ src/.coverage/ # git worktree worktree* **/worktree* + +# meson build directory +builddir diff --git a/bootstrap-conda b/bootstrap-conda index d50e39499cc..447a268f04d 100755 --- a/bootstrap-conda +++ b/bootstrap-conda @@ -98,7 +98,8 @@ echo >&2 $0:$LINENO: generate conda environment files ) > environment-template.yml ( sed 's/name: sage-build/name: sage/' environment-template.yml - echo " - meson" + echo " - meson" + echo " - meson-python" echo " # Additional packages providing all dependencies for the Sage library" for pkg in $SAGELIB_SYSTEM_PACKAGES; do echo " - $pkg" diff --git a/generate-meson.py b/generate-meson.py index 66959e8ceb7..ac77b336d7f 100644 --- a/generate-meson.py +++ b/generate-meson.py @@ -26,6 +26,8 @@ python_files = list(folder.glob('*.py')) cython_files = list(folder.glob('*.pyx')) +python_files.sort() +cython_files.sort() if not python_files and not cython_files: print(f'Error: {folder} does not contain any python or cython files') @@ -43,10 +45,15 @@ meson_build.write(f" subdir: '{folder_rel_to_src}',\n") meson_build.write(')\n\n') - meson_build.write('py.extension_module(\n') + meson_build.write('extension_data = {\n') for file in cython_files: - meson_build.write(f" '{file.name}',\n") - meson_build.write(f" subdir: '{folder_rel_to_src}',\n") - meson_build.write(' install: true,\n') - meson_build.write(' dependencies: py_dep,\n') - meson_build.write(')\n') + meson_build.write(f" '{file.stem}': files('{file.name}'),\n") + meson_build.write('}\n\n') + meson_build.write('foreach name, pyx : extension_data\n') + meson_build.write(" py.extension_module(name,\n") + meson_build.write(" sources: pyx,\n") + meson_build.write(f" subdir: '{folder_rel_to_src}',\n") + meson_build.write(' install: true,\n') + meson_build.write(' dependencies: py_dep,\n') + meson_build.write(' )\n') + meson_build.write('endforeach\n') diff --git a/meson.build b/meson.build index 1c9e28b8fe4..dea7505c986 100644 --- a/meson.build +++ b/meson.build @@ -8,7 +8,8 @@ project( # Python module # https://mesonbuild.com/Python-module.html -py = import('python').find_installation(pure: false) +py_module = import('python') +py = py_module.find_installation(pure: false) py_dep = py.dependency() # Compilers @@ -55,4 +56,30 @@ configure_file(input : 'pkgs/sage-conf_conda/_sage_conf/_conf.py.in', output : '_conf.py', configuration : conf_data) +test( + 'import', + py, + args: [ + '-c', + 'from sage.categories.category import Category; print(Category)', + ], + ) + +# py_with_pytest = py_module.find_installation(required: false, modules: ['pytest']) +# if py_with_pytest.found() +# test( +# 'pytest', +# py_with_pytest, +# args: [ +# '-m', +# 'pytest', +# '-c', +# meson.current_source_dir() / 'tox.ini', +# '--doctest-modules', +# meson.current_source_dir() / 'src' / 'sage' / 'categories' +# ], +# timeout: 0, +# ) +# endif + subdir('src') diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 00000000000..03f93330ac4 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,6 @@ +[build-system] +build-backend = 'mesonpy' +requires = ['meson-python', 'cython>=3.0.0'] + +[project] +name = 'sagemath' diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst index e9dd1bf21df..b137c9c0956 100644 --- a/src/doc/en/developer/meson.rst +++ b/src/doc/en/developer/meson.rst @@ -4,12 +4,21 @@ Assume we're starting from a clean repo and a fully set up conda environment:: ./bootstrap-conda mamba env create --file src/environment-dev-3.11.yml --name sage-dev conda activate sage-dev + ./bootstrap + ``` + +To compile and install the project in editable install, just use + + ```bash + pip install --no-build-isolation --config-settings=builddir=builddir --editable . ``` +Under the hood, pip invokes meson to configure and build the project. +We can also use meson directly as follows. + Now to configure the project, we need to run the following commands:: ```bash - ./bootstrap meson setup builddir ``` diff --git a/src/meson.build b/src/meson.build index ca2b1a5e846..05a4c0a3e83 100644 --- a/src/meson.build +++ b/src/meson.build @@ -4,6 +4,7 @@ # have to add them manually. # https://github.com/mesonbuild/meson/issues/9562 add_project_arguments('-I', meson.current_source_dir(), language : 'cython') +#add_project_arguments('-I', py.get_path('include'), language : 'cython') inc_numpy = run_command(py, [ @@ -52,8 +53,4 @@ inc_rings = include_directories('sage/rings') inc_src = include_directories('.') # Submodules -subdir('sage/cpython') -subdir('sage/libs/gmp') -subdir('sage/misc') -subdir('sage/structure') -subdir('sage/categories') +subdir('sage') diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index 76fd199555b..e687a2a9315 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -1,207 +1,214 @@ py.install_sources( - 'homset.py', - 'filtered_modules_with_basis.py', - 'modules_with_basis.py', - 'finitely_generated_lie_conformal_algebras.py', - 'bialgebras.py', - 'lambda_bracket_algebras_with_basis.py', - 'tutorial.py', - 'highest_weight_crystals.py', - 'signed_tensor.py', - 'principal_ideal_domains.py', - 'matrix_algebras.py', + '__init__.py', + 'additive_groups.py', + 'additive_magmas.py', + 'additive_monoids.py', 'additive_semigroups.py', - 'graded_bialgebras.py', - 'groups.py', - 'partially_ordered_monoids.py', - 'commutative_additive_groups.py', + 'affine_weyl_groups.py', + 'algebra_functor.py', + 'algebra_ideals.py', 'algebra_modules.py', - 'loop_crystals.py', - 'additive_monoids.py', - 'g_sets.py', - 'semirings.py', - 'regular_crystals.py', - 'realizations.py', - 'finite_dimensional_coalgebras_with_basis.py', - 'dual.py', - 'graded_modules_with_basis.py', - 'sets_with_partial_maps.py', - 'lie_groups.py', - 'semisimple_algebras.py', - 'magmas_and_additive_magmas.py', - 'graphs.py', - 'category_types.py', - 'sets_with_grading.py', - 'complex_reflection_groups.py', - 'topological_spaces.py', - 'coalgebras_with_basis.py', - 'finite_fields.py', - 'isomorphic_objects.py', - 'right_modules.py', - 'finite_dimensional_modules_with_basis.py', 'algebras.py', - 'associative_algebras.py', - 'coxeter_group_algebras.py', - 'hopf_algebras_with_basis.py', - 'distributive_magmas_and_additive_magmas.py', - 'algebra_ideals.py', - 'simplicial_complexes.py', 'algebras_with_basis.py', - 'additive_groups.py', - 'super_hopf_algebras_with_basis.py', - 'graded_algebras.py', - 'hecke_modules.py', - 'j_trivial_semigroups.py', - 'finite_dimensional_lie_algebras_with_basis.py', - 'finite_weyl_groups.py', - 'complex_reflection_or_generalized_coxeter_groups.py', - 'triangular_kac_moody_algebras.py', - 'function_fields.py', - 'supercommutative_algebras.py', - 'schemes.py', - 'lie_algebras_with_basis.py', - 'modules.py', - 'groupoid.py', - 'graded_bialgebras_with_basis.py', - 'super_modules.py', - 'poor_man_map.py', - 'finite_dimensional_algebras_with_basis.py', - 'vector_bundles.py', - 'finite_dimensional_semisimple_algebras_with_basis.py', - 'commutative_additive_semigroups.py', - 'unital_algebras.py', - 'finite_dimensional_bialgebras_with_basis.py', - 'graded_algebras_with_basis.py', - 'integral_domains.py', - 'magmas.py', - 'modular_abelian_varieties.py', - 'unique_factorization_domains.py', - 'monoids.py', - 'quotient_fields.py', - 'commutative_algebra_ideals.py', 'all.py', - 'monoid_algebras.py', - 'additive_magmas.py', - 'graded_modules.py', - 'filtered_algebras_with_basis.py', - 'finite_lattice_posets.py', - 'category.py', 'all__sagemath_objects.py', - 'finite_groups.py', + 'aperiodic_semigroups.py', + 'associative_algebras.py', + 'basic.py', + 'bialgebras.py', + 'bialgebras_with_basis.py', + 'bimodules.py', + 'cartesian_product.py', + 'category.py', + 'category_types.py', + 'category_with_axiom.py', + 'chain_complexes.py', + 'classical_crystals.py', + 'coalgebras.py', + 'coalgebras_with_basis.py', + 'commutative_additive_groups.py', + 'commutative_additive_monoids.py', + 'commutative_additive_semigroups.py', + 'commutative_algebra_ideals.py', 'commutative_algebras.py', - 'discrete_valuation.py', + 'commutative_ring_ideals.py', 'commutative_rings.py', - 'graded_lie_algebras.py', - 'group_algebras.py', + 'complete_discrete_valuation.py', + 'complex_reflection_groups.py', + 'complex_reflection_or_generalized_coxeter_groups.py', 'covariant_functorial_construction.py', - 'bialgebras_with_basis.py', - 'simplicial_sets.py', - 'filtered_hopf_algebras_with_basis.py', - 'commutative_additive_monoids.py', - 'subobjects.py', + 'coxeter_group_algebras.py', 'coxeter_groups.py', - 'pointed_sets.py', - 'weyl_groups.py', - 'super_algebras.py', - 'super_algebras_with_basis.py', - 'homsets.py', - 'with_realizations.py', - 'semigroups.py', - 'category_with_axiom.py', - 'supercrystals.py', - 'finitely_generated_semigroups.py', - 'aperiodic_semigroups.py', - 'bimodules.py', - 'primer.py', - 'basic.py', - 'regular_supercrystals.py', - 'classical_crystals.py', + 'crystals.py', + 'cw_complexes.py', + 'discrete_valuation.py', + 'distributive_magmas_and_additive_magmas.py', + 'division_rings.py', + 'domains.py', + 'drinfeld_modules.py', + 'dual.py', + 'enumerated_sets.py', + 'euclidean_domains.py', + 'facade_sets.py', + 'fields.py', + 'filtered_algebras.py', + 'filtered_algebras_with_basis.py', + 'filtered_hopf_algebras_with_basis.py', + 'filtered_modules.py', + 'filtered_modules_with_basis.py', + 'finite_complex_reflection_groups.py', + 'finite_coxeter_groups.py', + 'finite_crystals.py', + 'finite_dimensional_algebras_with_basis.py', + 'finite_dimensional_bialgebras_with_basis.py', + 'finite_dimensional_coalgebras_with_basis.py', 'finite_dimensional_graded_lie_algebras_with_basis.py', - 'posets.py', - 'finitely_generated_lambda_bracket_algebras.py', - 'algebra_functor.py', + 'finite_dimensional_hopf_algebras_with_basis.py', + 'finite_dimensional_lie_algebras_with_basis.py', + 'finite_dimensional_modules_with_basis.py', + 'finite_dimensional_nilpotent_lie_algebras_with_basis.py', + 'finite_dimensional_semisimple_algebras_with_basis.py', + 'finite_enumerated_sets.py', + 'finite_fields.py', + 'finite_groups.py', + 'finite_lattice_posets.py', 'finite_monoids.py', - 'drinfeld_modules.py', + 'finite_permutation_groups.py', + 'finite_posets.py', 'finite_semigroups.py', - 'graded_hopf_algebras_with_basis.py', 'finite_sets.py', - 'permutation_groups.py', - 'enumerated_sets.py', - 'finite_dimensional_nilpotent_lie_algebras_with_basis.py', + 'finite_weyl_groups.py', + 'finitely_generated_lambda_bracket_algebras.py', + 'finitely_generated_lie_conformal_algebras.py', + 'finitely_generated_magmas.py', + 'finitely_generated_semigroups.py', + 'function_fields.py', + 'g_sets.py', + 'gcd_domains.py', 'generalized_coxeter_groups.py', - 'super_modules_with_basis.py', - 'finite_crystals.py', - 'lambda_bracket_algebras.py', - 'vector_spaces.py', - 'tensor.py', - 'lie_conformal_algebras_with_basis.py', - 'polyhedra.py', - 'lie_conformal_algebras.py', + 'graded_algebras.py', + 'graded_algebras_with_basis.py', + 'graded_bialgebras.py', + 'graded_bialgebras_with_basis.py', + 'graded_coalgebras.py', + 'graded_coalgebras_with_basis.py', + 'graded_hopf_algebras.py', + 'graded_hopf_algebras_with_basis.py', + 'graded_lie_algebras.py', + 'graded_lie_algebras_with_basis.py', + 'graded_lie_conformal_algebras.py', + 'graded_modules.py', + 'graded_modules_with_basis.py', + 'graphs.py', + 'group_algebras.py', + 'groupoid.py', + 'groups.py', + 'h_trivial_semigroups.py', + 'hecke_modules.py', + 'highest_weight_crystals.py', + 'homset.py', + 'homsets.py', + 'hopf_algebras.py', + 'hopf_algebras_with_basis.py', 'infinite_enumerated_sets.py', - 'ring_ideals.py', - 'lattice_posets.py', + 'integral_domains.py', + 'isomorphic_objects.py', + 'j_trivial_semigroups.py', + 'kac_moody_algebras.py', 'l_trivial_semigroups.py', - 'pushout.py', - 'number_fields.py', - 'finite_coxeter_groups.py', - 'division_rings.py', - 'cw_complexes.py', - 'finite_enumerated_sets.py', - 'fields.py', - 'filtered_algebras.py', + 'lambda_bracket_algebras.py', + 'lambda_bracket_algebras_with_basis.py', + 'lattice_posets.py', + 'left_modules.py', 'lie_algebras.py', - 'shephard_groups.py', - 'chain_complexes.py', - 'finite_dimensional_hopf_algebras_with_basis.py', - 'graded_lie_algebras_with_basis.py', - 'affine_weyl_groups.py', - 'cartesian_product.py', - 'kac_moody_algebras.py', + 'lie_algebras_with_basis.py', + 'lie_conformal_algebras.py', + 'lie_conformal_algebras_with_basis.py', + 'lie_groups.py', + 'loop_crystals.py', + 'magmas.py', + 'magmas_and_additive_magmas.py', 'magmatic_algebras.py', - 'quantum_group_representations.py', - 'finitely_generated_magmas.py', - 'facade_sets.py', - 'crystals.py', - 'hopf_algebras.py', - 'finite_posets.py', - 'super_lie_conformal_algebras.py', - 'commutative_ring_ideals.py', - 'graded_lie_conformal_algebras.py', - 'objects.py', - 'graded_coalgebras_with_basis.py', - 'finite_permutation_groups.py', - 'coalgebras.py', - 'complete_discrete_valuation.py', - 'r_trivial_semigroups.py', - 'subquotients.py', - 'finite_complex_reflection_groups.py', - 'h_trivial_semigroups.py', - 'graded_hopf_algebras.py', + 'manifolds.py', + 'matrix_algebras.py', 'metric_spaces.py', + 'modular_abelian_varieties.py', + 'modules.py', + 'modules_with_basis.py', + 'monoid_algebras.py', + 'monoids.py', + 'number_fields.py', + 'objects.py', + 'partially_ordered_monoids.py', + 'permutation_groups.py', + 'pointed_sets.py', + 'polyhedra.py', + 'poor_man_map.py', + 'posets.py', + 'primer.py', + 'principal_ideal_domains.py', + 'pushout.py', + 'quantum_group_representations.py', + 'quotient_fields.py', 'quotients.py', - 'filtered_modules.py', - 'domains.py', + 'r_trivial_semigroups.py', + 'realizations.py', + 'regular_crystals.py', + 'regular_supercrystals.py', + 'right_modules.py', + 'ring_ideals.py', 'rings.py', - 'left_modules.py', - 'sets_cat.py', - 'graded_coalgebras.py', - 'euclidean_domains.py', - 'manifolds.py', 'rngs.py', - 'gcd_domains.py', + 'schemes.py', + 'semigroups.py', + 'semirings.py', + 'semisimple_algebras.py', + 'sets_cat.py', + 'sets_with_grading.py', + 'sets_with_partial_maps.py', + 'shephard_groups.py', + 'signed_tensor.py', + 'simplicial_complexes.py', + 'simplicial_sets.py', + 'subobjects.py', + 'subquotients.py', + 'super_algebras.py', + 'super_algebras_with_basis.py', + 'super_hopf_algebras_with_basis.py', + 'super_lie_conformal_algebras.py', + 'super_modules.py', + 'super_modules_with_basis.py', + 'supercommutative_algebras.py', + 'supercrystals.py', + 'tensor.py', + 'topological_spaces.py', + 'triangular_kac_moody_algebras.py', + 'tutorial.py', + 'unique_factorization_domains.py', + 'unital_algebras.py', + 'vector_bundles.py', + 'vector_spaces.py', + 'weyl_groups.py', + 'with_realizations.py', subdir: 'sage/categories', ) -py.extension_module( - 'category_singleton.pyx', - 'functor.pyx', - 'category_cy_helper.pyx', - 'morphism.pyx', - 'coercion_methods.pyx', - 'map.pyx', - 'action.pyx', - subdir: 'sage/categories', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep], -) +extension_data = { + 'action': files('action.pyx'), + 'category_cy_helper': files('category_cy_helper.pyx'), + #'category_singleton': files('category_singleton.pyx'), -- cannot find cpython for some reason?! + 'coercion_methods': files('coercion_methods.pyx'), + 'functor': files('functor.pyx'), + 'map': files('map.pyx'), + 'morphism': files('morphism.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/categories', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep], + ) +endforeach diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build index 91d0cdabbd1..d7a55aa2d7b 100644 --- a/src/sage/cpython/meson.build +++ b/src/sage/cpython/meson.build @@ -1,21 +1,28 @@ py.install_sources( - 'all.py', '__init__.py', '_py2_random.py', + 'all.py', subdir: 'sage/cpython', ) -py.extension_module( - 'debug.pyx', - 'getattr.pyx', - 'atexit.pyx', - 'wrapperdescr.pyx', - 'builtin_types.pyx', - 'cython_metaclass.pyx', - 'dict_del_by_value.pyx', - 'string.pyx', - 'type.pyx', - subdir: 'sage/cpython', - install: true, - dependencies: py_dep, -) +extension_data = { + 'atexit': files('atexit.pyx'), + 'builtin_types': files('builtin_types.pyx'), + 'cython_metaclass': files('cython_metaclass.pyx'), + 'debug': files('debug.pyx'), + 'dict_del_by_value': files('dict_del_by_value.pyx'), + 'getattr': files('getattr.pyx'), + 'string': files('string.pyx'), + 'type': files('type.pyx'), + 'wrapperdescr': files('wrapperdescr.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/cpython', + install: true, + include_directories: [inc_src], + dependencies: py_dep, + ) +endforeach diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 8618c3972ff..0245b073baa 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -3,9 +3,16 @@ py.install_sources( subdir: 'sage/libs/gmp', ) -py.extension_module( - 'pylong.pyx', - subdir: 'sage/libs/gmp', - install: true, - dependencies: py_dep, -) +extension_data = { + 'pylong': files('pylong.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/gmp', + install: true, + include_directories: [inc_cpython], + dependencies: py_dep, + ) +endforeach diff --git a/src/sage/meson.build b/src/sage/meson.build new file mode 100644 index 00000000000..7089abc814b --- /dev/null +++ b/src/sage/meson.build @@ -0,0 +1,5 @@ +subdir('cpython') +subdir('libs/gmp') +subdir('misc') +subdir('structure') +subdir('categories') diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index 7965a637fab..e653623c0a4 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -1,114 +1,121 @@ py.install_sources( - 'sageinspect.py', + '__init__.py', + 'abstract_method.py', + 'all.py', + 'all__sagemath_environment.py', + 'all__sagemath_objects.py', + 'all__sagemath_repl.py', 'banner.py', - 'timing.py', - 'method_decorator.py', - 'sage_eval.py', - 'package.py', - 'temporary_file.py', - 'defaults.py', + 'benchmark.py', + 'bindable_class.py', + 'call.py', + 'classgraph.py', 'compat.py', - 'rest_index_of_methods.py', - 'sage_input.py', - 'python.py', - 'sagedoc_conf.py', - 'replace_dot_all.py', + 'converting_dict.py', + 'copying.py', 'cython.py', + 'decorators.py', + 'defaults.py', + 'dev_tools.py', + 'dist.py', + 'edit_module.py', 'element_with_label.py', - 'sage_timeit.py', + 'explain_pickle.py', + 'flatten.py', + 'func_persist.py', + 'functional.py', + 'gperftools.py', + 'html.py', + 'inline_fortran.py', 'latex.py', + 'latex_macros.py', + 'latex_standalone.py', 'lazy_format.py', - 'converting_dict.py', + 'lazy_import_cache.py', 'map_threaded.py', + 'mathml.py', + 'messaging.py', + 'method_decorator.py', + 'misc.py', + 'mrange.py', + 'multireplace.py', + 'namespace_package.py', + 'object_multiplexer.py', + 'package.py', + 'package_dir.py', + 'pager.py', + 'prandom.py', + 'profiler.py', + 'proof.py', + 'python.py', + 'random_testing.py', 'remote_file.py', - 'bindable_class.py', - 'dev_tools.py', - 'unknown.py', - 'sh.py', - 'verbose.py', + 'replace_dot_all.py', + 'repr.py', + 'rest_index_of_methods.py', + 'sage_eval.py', + 'sage_input.py', + 'sage_timeit.py', 'sage_unittest.py', - 'functional.py', + 'sagedoc.py', + 'sagedoc_conf.py', + 'sageinspect.py', + 'sh.py', + 'sphinxify.py', 'superseded.py', - 'all.py', - 'pager.py', - 'all__sagemath_objects.py', - 'edit_module.py', - 'latex_macros.py', - 'explain_pickle.py', - 'html.py', - 'classgraph.py', - 'namespace_package.py', - 'random_testing.py', - 'viewer.py', 'table.py', - 'profiler.py', - 'object_multiplexer.py', - 'benchmark.py', - 'multireplace.py', - 'gperftools.py', - 'trace.py', + 'temporary_file.py', 'test_class_pickling.py', - 'mrange.py', - 'decorators.py', - 'func_persist.py', - 'copying.py', - 'prandom.py', - 'misc.py', - 'sagedoc.py', 'test_nested_class.py', - 'repr.py', - 'mathml.py', - 'sphinxify.py', - 'flatten.py', - 'messaging.py', - 'package_dir.py', - 'call.py', - 'abstract_method.py', - 'lazy_import_cache.py', - 'dist.py', - 'all__sagemath_repl.py', - 'all__sagemath_environment.py', - 'inline_fortran.py', - 'proof.py', - 'latex_standalone.py', + 'timing.py', + 'trace.py', + 'unknown.py', + 'verbose.py', + 'viewer.py', subdir: 'sage/misc', ) -py.extension_module( - 'c3_controlled.pyx', - 'lazy_import.pyx', - 'fpickle.pyx', - 'nested_class.pyx', - 'persist.pyx', - 'binary_tree.pyx', - 'parser.pyx', - 'lazy_list.pyx', - 'function_mangling.pyx', - 'classcall_metaclass.pyx', - 'randstate.pyx', - 'citation.pyx', - 'lazy_string.pyx', - 'search.pyx', - 'stopgap.pyx', - 'weak_dict.pyx', - 'misc_c.pyx', - 'instancedoc.pyx', - 'fast_methods.pyx', - 'sage_ostools.pyx', - 'pickle_old.pyx', - 'inherit_comparison.pyx', - 'derivative.pyx', - 'session.pyx', - 'allocator.pyx', - 'lazy_attribute.pyx', - 'callable_dict.pyx', - 'constant_function.pyx', - 'c3.pyx', - 'reset.pyx', - 'sage_timeit_class.pyx', - 'cachefunc.pyx', - subdir: 'sage/misc', - include_directories: [inc_cpython], - install: true, - dependencies: [py_dep, cysignals], -) +extension_data = { + 'allocator': files('allocator.pyx'), + 'binary_tree': files('binary_tree.pyx'), + 'c3': files('c3.pyx'), + 'c3_controlled': files('c3_controlled.pyx'), + 'cachefunc': files('cachefunc.pyx'), + 'callable_dict': files('callable_dict.pyx'), + 'citation': files('citation.pyx'), + 'classcall_metaclass': files('classcall_metaclass.pyx'), + 'constant_function': files('constant_function.pyx'), + 'derivative': files('derivative.pyx'), + 'fast_methods': files('fast_methods.pyx'), + 'fpickle': files('fpickle.pyx'), + 'function_mangling': files('function_mangling.pyx'), + 'inherit_comparison': files('inherit_comparison.pyx'), + 'instancedoc': files('instancedoc.pyx'), + 'lazy_attribute': files('lazy_attribute.pyx'), + 'lazy_import': files('lazy_import.pyx'), + 'lazy_list': files('lazy_list.pyx'), + 'lazy_string': files('lazy_string.pyx'), + 'misc_c': files('misc_c.pyx'), + 'nested_class': files('nested_class.pyx'), + 'parser': files('parser.pyx'), + 'persist': files('persist.pyx'), + 'pickle_old': files('pickle_old.pyx'), + 'randstate': files('randstate.pyx'), + 'reset': files('reset.pyx'), + 'sage_ostools': files('sage_ostools.pyx'), + 'sage_timeit_class': files('sage_timeit_class.pyx'), + 'search': files('search.pyx'), + 'session': files('session.pyx'), + 'stopgap': files('stopgap.pyx'), + 'weak_dict': files('weak_dict.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/misc', + include_directories: [inc_cpython], + install: true, + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index ef6c0218f6a..d9df8e8d78e 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -1,48 +1,54 @@ py.install_sources( - 'coerce_exceptions.py', - 'unique_representation.py', - 'nonexact.py', - 'global_options.py', - 'sequence.py', + '__init__.py', 'all.py', + 'coerce_exceptions.py', + 'dynamic_class.py', + 'factorization.py', 'factorization_integer.py', + 'formal_sum.py', 'gens_py.py', - 'sage_object_test.py', - 'dynamic_class.py', - 'support_view.py', - '__init__.py', + 'global_options.py', 'indexed_generators.py', - 'factorization.py', - 'test_factory.py', 'list_clone_timings.py', - 'formal_sum.py', + 'nonexact.py', + 'sage_object_test.py', + 'sequence.py', 'set_factories.py', 'set_factories_example.py', + 'support_view.py', + 'test_factory.py', + 'unique_representation.py', subdir: 'sage/structure', ) -py.extension_module( - 'list_clone_timings_cy.pyx', - 'sage_object.pyx', - 'parent_base.pyx', - 'debug_options.pyx', - 'coerce.pyx', - 'factory.pyx', - 'parent_old.pyx', - 'coerce_maps.pyx', - 'category_object.pyx', - 'richcmp.pyx', - 'element.pyx', - 'list_clone_demo.pyx', - 'parent_gens.pyx', - 'coerce_dict.pyx', - 'mutability.pyx', - 'element_wrapper.pyx', - 'coerce_actions.pyx', - 'parent.pyx', - 'list_clone.pyx', - subdir: 'sage/structure', - install: true, - include_directories: [inc_cpython, inc_rings, inc_src], - dependencies: [py_dep, gmpy2, cysignals], -) +extension_data = { + 'category_object': files('category_object.pyx'), + 'coerce': files('coerce.pyx'), + 'coerce_actions': files('coerce_actions.pyx'), + 'coerce_dict': files('coerce_dict.pyx'), + 'coerce_maps': files('coerce_maps.pyx'), + 'debug_options': files('debug_options.pyx'), + 'element': files('element.pyx'), + 'element_wrapper': files('element_wrapper.pyx'), + 'factory': files('factory.pyx'), + 'list_clone': files('list_clone.pyx'), + 'list_clone_demo': files('list_clone_demo.pyx'), + 'list_clone_timings_cy': files('list_clone_timings_cy.pyx'), + 'mutability': files('mutability.pyx'), + 'parent': files('parent.pyx'), + 'parent_base': files('parent_base.pyx'), + 'parent_gens': files('parent_gens.pyx'), + 'parent_old': files('parent_old.pyx'), + 'richcmp': files('richcmp.pyx'), + 'sage_object': files('sage_object.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/structure', + install: true, + include_directories: [inc_cpython, inc_rings, inc_src], + dependencies: [py_dep, gmpy2, cysignals], + ) +endforeach From 090aa2a20655a19921844f08c0606ca815e62f2c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 25 Oct 2023 03:41:57 +0000 Subject: [PATCH 014/229] small improvements --- meson.build | 4 ++-- src/doc/en/developer/meson.rst | 4 ++++ src/sage/misc/cachefunc.pxd | 2 +- src/sage/structure/__init__.py | 2 -- 4 files changed, 7 insertions(+), 5 deletions(-) diff --git a/meson.build b/meson.build index dea7505c986..b1c16df6459 100644 --- a/meson.build +++ b/meson.build @@ -23,7 +23,7 @@ conf_data = configuration_data() conf_data.set('PACKAGE_VERSION', '1.2.3') maxima = find_program('maxima', required: true) -conf_data.set('SAGE_MAXIMA', maxima.path()) +conf_data.set('SAGE_MAXIMA', maxima.full_path()) # Conda's ecl does not have any problems with Maxima, so nothing needs to be set here: conf_data.set('SAGE_MAXIMA_FAS', '') @@ -39,7 +39,7 @@ conf_data.set('NTL_INCDIR', '') conf_data.set('NTL_LIBDIR', '') ecl_config = find_program('ecl-config', required: true) -conf_data.set('SAGE_ECL_CONFIG', ecl_config.path()) +conf_data.set('SAGE_ECL_CONFIG', ecl_config.full_path()) conf_data.set('SAGE_ARCHFLAGS', 'unset') diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst index b137c9c0956..422aa5001cf 100644 --- a/src/doc/en/developer/meson.rst +++ b/src/doc/en/developer/meson.rst @@ -7,6 +7,10 @@ Assume we're starting from a clean repo and a fully set up conda environment:: ./bootstrap ``` +(Note, that in the codespace environment you first have to delete the +already compiled files, e.g. with ``shopt -s globstar`` followed by ``rm src/**/*.so`` +) + To compile and install the project in editable install, just use ```bash diff --git a/src/sage/misc/cachefunc.pxd b/src/sage/misc/cachefunc.pxd index 8e5d9dfa42a..1ebd6f25a9d 100644 --- a/src/sage/misc/cachefunc.pxd +++ b/src/sage/misc/cachefunc.pxd @@ -1,4 +1,4 @@ -from .function_mangling cimport ArgumentFixer +from sage.misc.function_mangling cimport ArgumentFixer cpdef dict_key(o) cpdef cache_key(o) diff --git a/src/sage/structure/__init__.py b/src/sage/structure/__init__.py index 8689eb1717f..e69de29bb2d 100644 --- a/src/sage/structure/__init__.py +++ b/src/sage/structure/__init__.py @@ -1,2 +0,0 @@ -# Resolve a cyclic import -import sage.structure.element From 393aa081508a7c58ab2b896988fc26bb30773056 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Oct 2023 15:49:39 +0000 Subject: [PATCH 015/229] add a few more meson build files --- src/sage/data_structures/meson.build | 25 +++++++++++++++++++ src/sage/meson.build | 32 ++++++++++++++++++++++++ src/sage/sets/meson.build | 37 ++++++++++++++++++++++++++++ src/sage/structure/__init__.py | 0 src/sage/structure/meson.build | 2 +- 5 files changed, 95 insertions(+), 1 deletion(-) create mode 100644 src/sage/data_structures/meson.build create mode 100644 src/sage/sets/meson.build delete mode 100644 src/sage/structure/__init__.py diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build new file mode 100644 index 00000000000..a33c5904eb2 --- /dev/null +++ b/src/sage/data_structures/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + 'all.py', + 'mutable_poset.py', + 'stream.py', + subdir: 'sage/data_structures', +) + +extension_data = { + #'binary_search': files('binary_search.pyx'), compilation error + 'bitset': files('bitset.pyx'), + 'bitset_base': files('bitset_base.pyx'), + 'blas_dict': files('blas_dict.pyx'), + #'bounded_integer_sequences': files('bounded_integer_sequences.pyx'), requires flint + 'list_of_pairs': files('list_of_pairs.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/data_structures', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/meson.build b/src/sage/meson.build index 7089abc814b..6a30c76b371 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -1,5 +1,37 @@ +sage_install_dir = py.get_install_dir() / 'sage' + +# Packages that need no processing and can be installed directly +no_processing = [ + 'repl', + 'doctest', + 'features', +] +foreach package : no_processing + install_subdir(package, install_dir: sage_install_dir) +endforeach + +py.install_sources( + 'all.py', + 'all__sagemath_bliss.py', + 'all__sagemath_categories.py', + 'all__sagemath_coxeter3.py', + 'all__sagemath_environment.py', + 'all__sagemath_mcqd.py', + 'all__sagemath_meataxe.py', + 'all__sagemath_objects.py', + 'all__sagemath_repl.py', + 'all__sagemath_sirocco.py', + 'all__sagemath_tdlib.py', + 'all_cmdline.py', + 'env.py', + 'version.py', + subdir: 'sage', +) + subdir('cpython') subdir('libs/gmp') subdir('misc') subdir('structure') subdir('categories') +subdir('sets') +subdir('data_structures') diff --git a/src/sage/sets/meson.build b/src/sage/sets/meson.build new file mode 100644 index 00000000000..734754d05b6 --- /dev/null +++ b/src/sage/sets/meson.build @@ -0,0 +1,37 @@ +py.install_sources( + 'all.py', + 'all__sagemath_objects.py', + 'cartesian_product.py', + 'condition_set.py', + 'disjoint_union_enumerated_sets.py', + 'family.py', + 'finite_enumerated_set.py', + 'finite_set_maps.py', + 'image_set.py', + 'integer_range.py', + 'non_negative_integers.py', + 'positive_integers.py', + 'primes.py', + 'real_set.py', + 'set.py', + 'set_from_iterator.py', + 'totally_ordered_finite_set.py', + subdir: 'sage/sets', +) + +extension_data = { + #'disjoint_set': files('disjoint_set.pyx'), Needs other imports + 'finite_set_map_cy': files('finite_set_map_cy.pyx'), + 'pythonclass': files('pythonclass.pyx'), + 'recursively_enumerated_set': files('recursively_enumerated_set.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/sets', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/structure/__init__.py b/src/sage/structure/__init__.py deleted file mode 100644 index e69de29bb2d..00000000000 diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index d9df8e8d78e..05d1c095874 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -1,5 +1,4 @@ py.install_sources( - '__init__.py', 'all.py', 'coerce_exceptions.py', 'dynamic_class.py', @@ -20,6 +19,7 @@ py.install_sources( 'unique_representation.py', subdir: 'sage/structure', ) +install_subdir('proof', install_dir: sage_install_dir / 'structure' / 'proof') extension_data = { 'category_object': files('category_object.pyx'), From 7c2f3a1b4e312559830dda18ab78ee0e9d58ab4b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 29 Oct 2023 15:58:41 +0000 Subject: [PATCH 016/229] add more meson files --- meson.build | 3 + src/meson.build | 58 ++++++++++-- src/sage/arith/meson.build | 25 ++++++ src/sage/categories/meson.build | 6 +- src/sage/combinat/meson.build | 151 ++++++++++++++++++++++++++++++++ src/sage/libs/flint/meson.build | 23 +++++ src/sage/libs/gmp/meson.build | 2 +- src/sage/libs/gsl/meson.build | 17 ++++ src/sage/libs/meson.build | 38 ++++++++ src/sage/meson.build | 6 +- src/sage/misc/meson.build | 2 +- src/sage/rings/meson.build | 105 ++++++++++++++++++++++ 12 files changed, 424 insertions(+), 12 deletions(-) create mode 100644 src/sage/arith/meson.build create mode 100644 src/sage/combinat/meson.build create mode 100644 src/sage/libs/flint/meson.build create mode 100644 src/sage/libs/gsl/meson.build create mode 100644 src/sage/libs/meson.build create mode 100644 src/sage/rings/meson.build diff --git a/meson.build b/meson.build index b1c16df6459..d3b48741eaf 100644 --- a/meson.build +++ b/meson.build @@ -56,6 +56,9 @@ configure_file(input : 'pkgs/sage-conf_conda/_sage_conf/_conf.py.in', output : '_conf.py', configuration : conf_data) +#arb = dependency('arb', required: true) +#cpari = dependency('cpari', required: true) + test( 'import', py, diff --git a/src/meson.build b/src/meson.build index 05a4c0a3e83..3a023d92c68 100644 --- a/src/meson.build +++ b/src/meson.build @@ -1,11 +1,5 @@ # Setup dependencies that are needed by many modules -# Meson currently ignores include_directories for Cython modules, so we -# have to add them manually. -# https://github.com/mesonbuild/meson/issues/9562 -add_project_arguments('-I', meson.current_source_dir(), language : 'cython') -#add_project_arguments('-I', py.get_path('include'), language : 'cython') - inc_numpy = run_command(py, [ '-c', @@ -47,9 +41,61 @@ print(gmpy2.__file__.replace('__init__.py', '')) gmpy2 = declare_dependency( include_directories: inc_gmpy2, ) +gmp = dependency('gmp', required: true) + +inc_cypari2 = run_command(py, + [ + '-c', + ''' +import cypari2 +print(cypari2.__file__.replace('__init__.py', '')) + '''.strip() + ], + check: true + ).stdout().strip() +cypari2 = declare_dependency( + include_directories: inc_cypari2, +) + +# It's strange but cython cannot find its own include files +# so we find them ourselves, and add them to the include path +inc_cython = run_command(py, + [ + '-c', + ''' +import Cython +print(Cython.__file__.replace('__init__.py', '')) + '''.strip() + ], + check: true + ).stdout().strip() +add_project_arguments('-I', inc_cython + 'Includes', language : 'cython') + +# Meson currently ignores include_directories for Cython modules, so we +# have to add them manually. +# https://github.com/mesonbuild/meson/issues/9562 +add_project_arguments('-I', meson.current_source_dir(), language : 'cython') +#add_project_arguments('-I', py.get_path('include'), language : 'cython') + +# Add global compiler flags +add_project_arguments('-X auto_pickle=False', language : 'cython') +add_project_arguments('-X autotestdict=False', language : 'cython') +add_project_arguments('-X binding=False', language : 'cython') +add_project_arguments('-X c_api_binop_methods=True', language : 'cython') +add_project_arguments('-X cdivision=True', language : 'cython') +add_project_arguments('-X cpow=True', language : 'cython') +add_project_arguments('-X embedsignature=True', language : 'cython') +add_project_arguments('-X fast_getattr=True', language : 'cython') +#add_project_arguments('-X language_level="3"', language : 'cython') +add_project_arguments('-X legacy_implicit_noexcept=True', language : 'cython') +add_project_arguments('-X preliminary_late_includes_cy28=True', language : 'cython') inc_cpython = include_directories('sage/cpython') inc_rings = include_directories('sage/rings') +inc_flint = include_directories('sage/libs/flint') +inc_gsl = include_directories('sage/libs/gsl') +inc_data_structures = include_directories('sage/data_structures') +inc_ext = include_directories('sage/ext') inc_src = include_directories('.') # Submodules diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build new file mode 100644 index 00000000000..c987f21b7e4 --- /dev/null +++ b/src/sage/arith/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + 'all.py', + 'all__sagemath_objects.py', + 'misc.py', + subdir: 'sage/arith', +) + +extension_data = { + 'functions': files('functions.pyx'), + 'multi_modular': files('multi_modular.pyx'),# - compilation error + 'numerical_approx': files('numerical_approx.pyx'), + 'power': files('power.pyx'), + 'rational_reconstruction': files('rational_reconstruction.pyx'), + 'srange': files('srange.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/arith', + install: true, + include_directories: [inc_cpython, inc_rings, inc_ext], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index e687a2a9315..0639d5bd1ff 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -1,5 +1,4 @@ py.install_sources( - '__init__.py', 'additive_groups.py', 'additive_magmas.py', 'additive_monoids.py', @@ -196,7 +195,7 @@ py.install_sources( extension_data = { 'action': files('action.pyx'), 'category_cy_helper': files('category_cy_helper.pyx'), - #'category_singleton': files('category_singleton.pyx'), -- cannot find cpython for some reason?! + 'category_singleton': files('category_singleton.pyx'), 'coercion_methods': files('coercion_methods.pyx'), 'functor': files('functor.pyx'), 'map': files('map.pyx'), @@ -208,7 +207,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/categories', install: true, - include_directories: [inc_cpython], + #cython_args: ['-I', inc_numpy, '-I', '/workspaces/sage/builddir'], + include_directories: [inc_cpython, inc_numpy], dependencies: [py_dep], ) endforeach diff --git a/src/sage/combinat/meson.build b/src/sage/combinat/meson.build new file mode 100644 index 00000000000..6573914b5d8 --- /dev/null +++ b/src/sage/combinat/meson.build @@ -0,0 +1,151 @@ +py.install_sources( + 'abstract_tree.py', + 'affine_permutation.py', + 'algebraic_combinatorics.py', + 'all.py', + 'alternating_sign_matrix.py', + 'backtrack.py', + 'baxter_permutations.py', + 'bijectionist.py', + 'binary_recurrence_sequences.py', + 'binary_tree.py', + 'blob_algebra.py', + 'cartesian_product.py', + 'catalog_partitions.py', + 'cluster_complex.py', + 'colored_permutations.py', + 'combinat.py', + 'combination.py', + 'combinatorial_map.py', + 'composition.py', + 'composition_signed.py', + 'composition_tableau.py', + 'constellation.py', + 'core.py', + 'counting.py', + 'cyclic_sieving_phenomenon.py', + 'decorated_permutation.py', + 'derangements.py', + 'descent_algebra.py', + 'diagram.py', + 'diagram_algebras.py', + 'dlx.py', + 'dyck_word.py', + 'e_one_star.py', + 'enumerated_sets.py', + 'family.py', + 'finite_state_machine.py', + 'finite_state_machine_generators.py', + 'fqsym.py', + 'free_dendriform_algebra.py', + 'free_module.py', + 'free_prelie_algebra.py', + 'fully_commutative_elements.py', + 'fully_packed_loop.py', + 'gelfand_tsetlin_patterns.py', + 'graph_path.py', + 'gray_codes.py', + 'grossman_larson_algebras.py', + 'growth.py', + 'hall_polynomial.py', + 'hillman_grassl.py', + 'integer_matrices.py', + 'integer_vector.py', + 'integer_vector_weighted.py', + 'integer_vectors_mod_permgroup.py', + 'interval_posets.py', + 'k_tableau.py', + 'kazhdan_lusztig.py', + 'key_polynomial.py', + 'knutson_tao_puzzles.py', + 'lr_tableau.py', + 'misc.py', + 'multiset_partition_into_sets_ordered.py', + 'necklace.py', + 'non_decreasing_parking_function.py', + 'nu_dyck_word.py', + 'nu_tamari_lattice.py', + 'ordered_tree.py', + 'output.py', + 'parallelogram_polyomino.py', + 'parking_functions.py', + 'partition.py', + 'partition_algebra.py', + 'partition_kleshchev.py', + 'partition_shifting_algebras.py', + 'partition_tuple.py', + 'perfect_matching.py', + 'permutation.py', + 'plane_partition.py', + 'q_analogues.py', + 'quickref.py', + 'ranker.py', + 'recognizable_series.py', + 'regular_sequence.py', + 'restricted_growth.py', + 'ribbon.py', + 'ribbon_shaped_tableau.py', + 'ribbon_tableau.py', + 'rooted_tree.py', + 'rsk.py', + 'schubert_polynomial.py', + 'set_partition.py', + 'set_partition_ordered.py', + 'shard_order.py', + 'shifted_primed_tableau.py', + 'shuffle.py', + 'sidon_sets.py', + 'similarity_class_type.py', + 'sine_gordon.py', + 'six_vertex_model.py', + 'skew_partition.py', + 'skew_tableau.py', + 'sloane_functions.py', + 'specht_module.py', + 'subset.py', + 'subsets_hereditary.py', + 'subsets_pairwise.py', + 'subword.py', + 'subword_complex.py', + 'super_tableau.py', + 'superpartition.py', + 'symmetric_group_algebra.py', + 'symmetric_group_representations.py', + 't_sequences.py', + 'tableau.py', + 'tableau_residues.py', + 'tableau_tuple.py', + 'tamari_lattices.py', + 'tiling.py', + 'tools.py', + 'triangles_FHM.py', + 'tuple.py', + 'tutorial.py', + 'vector_partition.py', + 'yang_baxter_graph.py', + subdir: 'sage/combinat', +) + +extension_data = { + 'combinat_cython': files('combinat_cython.pyx'), + 'debruijn_sequence': files('debruijn_sequence.pyx'), + 'degree_sequences': files('degree_sequences.pyx'), + 'enumeration_mod_permgroup': files('enumeration_mod_permgroup.pyx'), + 'expnums': files('expnums.pyx'), + 'fast_vector_partitions': files('fast_vector_partitions.pyx'), + 'partitions': files('partitions.pyx'), + 'permutation_cython': files('permutation_cython.pyx'), + 'q_bernoulli': files('q_bernoulli.pyx'), + 'set_partition_iterator': files('set_partition_iterator.pyx'), + 'subword_complex_c': files('subword_complex_c.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build new file mode 100644 index 00000000000..7d64f9d44fd --- /dev/null +++ b/src/sage/libs/flint/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/flint', +) + +extension_data = { + 'arith': files('arith.pyx'), + 'flint': files('flint.pyx'), + 'fmpz_factor': files('fmpz_factor.pyx'), + 'fmpz_poly': files('fmpz_poly.pyx'), + 'qsieve': files('qsieve.pyx'), + 'ulong_extras': files('ulong_extras.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/flint', + install: true, + include_directories: [inc_cpython, inc_src, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 0245b073baa..1145393220a 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -13,6 +13,6 @@ foreach name, pyx : extension_data subdir: 'sage/libs/gmp', install: true, include_directories: [inc_cpython], - dependencies: py_dep, + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/libs/gsl/meson.build b/src/sage/libs/gsl/meson.build new file mode 100644 index 00000000000..4d7d3c61a4d --- /dev/null +++ b/src/sage/libs/gsl/meson.build @@ -0,0 +1,17 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/gsl', +) + +extension_data = { + 'array': files('array.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/gsl', + install: true, + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build new file mode 100644 index 00000000000..d75b624652c --- /dev/null +++ b/src/sage/libs/meson.build @@ -0,0 +1,38 @@ +py.install_sources( + 'all.py', + 'all__sagemath_coxeter3.py', + 'all__sagemath_meataxe.py', + 'all__sagemath_objects.py', + 'all__sagemath_sirocco.py', + subdir: 'sage/libs', +) + +extension_data = { + #'braiding': files('braiding.pyx'),# - compile error (ios) + 'ecl': files('ecl.pyx'), + 'homfly': files('homfly.pyx'), + 'libecm': files('libecm.pyx'), + #'meataxe': files('meataxe.pyx'),# - need meataxe +} + +dependencies = [py_dep, cysignals, cypari2] + +sirocco = dependency('sirocco', required: false) +if sirocco.found() + #extension_data['sirocco'] += files('sirocco.pxd') + dependencies += [sirocco] +endif + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs', + install: true, + include_directories: [inc_cpython], + dependencies: dependencies, + ) +endforeach + +subdir('gmp') +subdir('gsl') +subdir('flint') diff --git a/src/sage/meson.build b/src/sage/meson.build index 6a30c76b371..327cf4bf11c 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -5,6 +5,7 @@ no_processing = [ 'repl', 'doctest', 'features', + 'typeset', ] foreach package : no_processing install_subdir(package, install_dir: sage_install_dir) @@ -29,9 +30,12 @@ py.install_sources( ) subdir('cpython') -subdir('libs/gmp') +subdir('libs') subdir('misc') subdir('structure') subdir('categories') subdir('sets') subdir('data_structures') +subdir('rings') +subdir('arith') +subdir('combinat') diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index e653623c0a4..5556645215a 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -116,6 +116,6 @@ foreach name, pyx : extension_data subdir: 'sage/misc', include_directories: [inc_cpython], install: true, - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build new file mode 100644 index 00000000000..eeb3e4e5480 --- /dev/null +++ b/src/sage/rings/meson.build @@ -0,0 +1,105 @@ +py.install_sources( + 'algebraic_closure_finite_field.py', + 'all.py', + 'all__sagemath_categories.py', + 'all__sagemath_objects.py', + 'big_oh.py', + 'cc.py', + 'cfinite_sequence.py', + 'cif.py', + 'commutative_algebra.py', + 'complex_interval_field.py', + 'continued_fraction.py', + 'continued_fraction_gosper.py', + 'derivation.py', + 'fraction_field.py', + 'generic.py', + 'homset.py', + 'ideal.py', + 'ideal_monoid.py', + 'imaginary_unit.py', + 'infinity.py', + 'laurent_series_ring.py', + 'lazy_series.py', + 'lazy_series_ring.py', + 'localization.py', + 'monomials.py', + 'multi_power_series_ring.py', + 'multi_power_series_ring_element.py', + 'numbers_abc.py', + 'pari_ring.py', + 'power_series_ring.py', + 'puiseux_series_ring.py', + 'qqbar.py', + 'qqbar_decorators.py', + 'quotient_ring.py', + 'quotient_ring_element.py', + 'rational_field.py', + 'real_field.py', + 'ring_extension_homset.py', + 'tate_algebra.py', + 'tests.py', + 'universal_cyclotomic_field.py', + subdir: 'sage/rings', +) + +extension_data = { + 'abc': files('abc.pyx'), + #'bernmm': files('bernmm.pyx'), - compilation error + #'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), - compilation error + #'complex_arb': files('complex_arb.pyx'), - needs arb + 'complex_conversion': files('complex_conversion.pyx'), + 'complex_double': files('complex_double.pyx'), + 'complex_interval': files('complex_interval.pyx'), + 'complex_mpc': files('complex_mpc.pyx'), + 'complex_mpfr': files('complex_mpfr.pyx'), + 'factorint': files('factorint.pyx'), + 'factorint_flint': files('factorint_flint.pyx'), + 'factorint_pari': files('factorint_pari.pyx'), + 'fast_arith': files('fast_arith.pyx'), + #'fraction_field_FpT': files('fraction_field_FpT.pyx'), - needs finite rings + 'fraction_field_element': files('fraction_field_element.pyx'), + 'integer': files('integer.pyx'), + 'integer_ring': files('integer_ring.pyx'), + 'laurent_series_ring_element': files('laurent_series_ring_element.pyx'), + 'morphism': files('morphism.pyx'), + 'noncommutative_ideals': files('noncommutative_ideals.pyx'), + 'power_series_mpoly': files('power_series_mpoly.pyx'), + 'power_series_pari': files('power_series_pari.pyx'), + 'power_series_poly': files('power_series_poly.pyx'), + 'power_series_ring_element': files('power_series_ring_element.pyx'), + 'puiseux_series_ring_element': files('puiseux_series_ring_element.pyx'), + 'rational': files('rational.pyx'), + #'real_arb': files('real_arb.pyx'), - needs arb + 'real_double': files('real_double.pyx'), + 'real_double_element_gsl': files('real_double_element_gsl.pyx'), + 'real_interval_absolute': files('real_interval_absolute.pyx'), + 'real_lazy': files('real_lazy.pyx'), + 'real_mpfi': files('real_mpfi.pyx'), + 'real_mpfr': files('real_mpfr.pyx'), + 'ring': files('ring.pyx'), + 'ring_extension': files('ring_extension.pyx'), + 'ring_extension_conversion': files('ring_extension_conversion.pyx'), + 'ring_extension_element': files('ring_extension_element.pyx'), + 'ring_extension_morphism': files('ring_extension_morphism.pyx'), + 'sum_of_squares': files('sum_of_squares.pyx'), + 'tate_algebra_element': files('tate_algebra_element.pyx'), + 'tate_algebra_ideal': files('tate_algebra_ideal.pyx'), +} + +mpfi = declare_dependency( + dependencies: [ + cc.find_library('mpfi'), + ] +) + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings', + install: true, + #cython_args: ['-I', inc_gsl], + include_directories: [inc_cpython, inc_flint, inc_gsl], + dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, gmp], + ) +endforeach From a1dc9369018a5eaf21b4df1b4b8a2f211ebcd6ed Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 29 Oct 2023 16:14:58 +0000 Subject: [PATCH 017/229] readd init --- src/sage/structure/__init__.py | 2 ++ src/sage/structure/meson.build | 1 + 2 files changed, 3 insertions(+) create mode 100644 src/sage/structure/__init__.py diff --git a/src/sage/structure/__init__.py b/src/sage/structure/__init__.py new file mode 100644 index 00000000000..006aa3024c6 --- /dev/null +++ b/src/sage/structure/__init__.py @@ -0,0 +1,2 @@ +# Resolve a cyclic import +import sage.structure.element \ No newline at end of file diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index 05d1c095874..4dd15dd48c6 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -1,4 +1,5 @@ py.install_sources( + '__init__.py', 'all.py', 'coerce_exceptions.py', 'dynamic_class.py', From 8a2cc9ce47b70b1bb6d9091ac9d3fe555f426545 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 12:10:59 +0000 Subject: [PATCH 018/229] Fix build (kind of) --- src/sage/categories/category_singleton.pyx | 2 ++ src/sage/cpython/python_debug.pxd | 2 +- 2 files changed, 3 insertions(+), 1 deletion(-) diff --git a/src/sage/categories/category_singleton.pyx b/src/sage/categories/category_singleton.pyx index 543ce0375f7..5d0acb90891 100644 --- a/src/sage/categories/category_singleton.pyx +++ b/src/sage/categories/category_singleton.pyx @@ -15,6 +15,8 @@ from sage.categories.category import Category from sage.structure.category_object cimport CategoryObject from sage.structure.dynamic_class import DynamicMetaclass +# I have no idea why this is necessary, but otherwise the type import fails (maybe because its shadowed by sage's cpython module?) +from cpython.method cimport PyMethod_Check from cpython.type cimport PyType_IsSubtype # This helper class is used to implement Category_singleton.__contains__ diff --git a/src/sage/cpython/python_debug.pxd b/src/sage/cpython/python_debug.pxd index 57057a3ff9f..a7a2f112d00 100644 --- a/src/sage/cpython/python_debug.pxd +++ b/src/sage/cpython/python_debug.pxd @@ -9,7 +9,7 @@ from cpython.ref cimport PyObject, PyTypeObject -cdef extern from "sage/cpython/python_debug.h": +cdef extern from "python_debug.h": # This is what is generally meant by "a debug build" of Python. # Implies Py_REF_DEBUG, Py_TRACE_REFS, and PYMALLOC_DEBUG (if From 9baf964a0e619a49e68aab7673ceeeed44c44190 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 12:20:38 +0000 Subject: [PATCH 019/229] Add meson to ci --- .github/workflows/ci-meson.yml | 87 ++++++++++++++++++++++++++++++++++ 1 file changed, 87 insertions(+) create mode 100644 .github/workflows/ci-meson.yml diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml new file mode 100644 index 00000000000..b8df3fe4516 --- /dev/null +++ b/.github/workflows/ci-meson.yml @@ -0,0 +1,87 @@ +name: Build & Test using Conda + +on: + push: + branches: + - master + - develop + pull_request: + workflow_dispatch: + # Allow to run manually + +concurrency: + # Cancel previous runs of this workflow for the same branch + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +jobs: + test: + name: Conda (Meson) + runs-on: ${{ matrix.os }} + + strategy: + fail-fast: ${{ github.event_name == 'pull_request' }} + max-parallel: ${{ github.event_name == 'pull_request' && 2 || 6 }} + matrix: + os: [ubuntu-latest, macos-latest] + python: ['3.9', '3.10', '3.11'] + # Optional environment is disabled for now as its not yet working + # environment: [environment, environment-optional] + conda-env: [environment] + + steps: + - uses: actions/checkout@v4 + + - name: Merge CI fixes from sagemath/sage + run: | + .ci/merge-fixes.sh + env: + GH_TOKEN: ${{ github.token }} + + - name: Create conda environment files + run: ./bootstrap-conda + + - name: Cache conda packages + uses: actions/cache@v3 + with: + path: ~/conda_pkgs_dir + key: + ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} + + - name: Setup Conda environment + uses: conda-incubator/setup-miniconda@v2 + with: + python-version: ${{ matrix.python }} + miniforge-version: latest + use-mamba: true + channels: conda-forge + channel-priority: true + activate-environment: sage + environment-file: src/${{ matrix.conda-env }}-${{ matrix.python }}.yml + + - name: Print Conda environment + shell: bash -l {0} + run: | + conda info + conda list + + - name: Bootstrap + shell: bash -l {0} + run: ./bootstrap + + - name: Build + shell: bash -l {0} + run: | + # Compile as extra step for better error reporting + meson compile -j2 -C builddir + pip install --no-build-isolation --config-settings=builddir=builddir --editable . + + - name: Verify dependencies + if: success() || failure() + shell: bash -l {0} + run: pip check + + - name: Test + if: success() || failure() + shell: bash -l {0} + run: python -m pytest -c src/tox.ini --doctest-modules src From 21c4c9a0cdf65812e4e1fb2ee87127cccffba1f5 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 12:30:35 +0000 Subject: [PATCH 020/229] improve ci --- .github/workflows/ci-meson.yml | 10 +++------- 1 file changed, 3 insertions(+), 7 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index b8df3fe4516..0a5e490344b 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -1,4 +1,4 @@ -name: Build & Test using Conda +name: Build & Test using Conda (Meson) on: push: @@ -16,7 +16,7 @@ concurrency: jobs: test: - name: Conda (Meson) + name: Meson runs-on: ${{ matrix.os }} strategy: @@ -73,13 +73,9 @@ jobs: shell: bash -l {0} run: | # Compile as extra step for better error reporting + meson setup builddir meson compile -j2 -C builddir pip install --no-build-isolation --config-settings=builddir=builddir --editable . - - - name: Verify dependencies - if: success() || failure() - shell: bash -l {0} - run: pip check - name: Test if: success() || failure() From c3cdc3137a7eae9caa1bf6d7d07effffc0879a19 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 12:34:19 +0000 Subject: [PATCH 021/229] don't apply ci fixes --- .github/workflows/ci-meson.yml | 6 ------ 1 file changed, 6 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 0a5e490344b..7e8814154dd 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -32,12 +32,6 @@ jobs: steps: - uses: actions/checkout@v4 - - name: Merge CI fixes from sagemath/sage - run: | - .ci/merge-fixes.sh - env: - GH_TOKEN: ${{ github.token }} - - name: Create conda environment files run: ./bootstrap-conda From 52bc4c6cf8cf934eb0c622120541b2c2ea228011 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 12:43:57 +0000 Subject: [PATCH 022/229] add pytest to conda env --- bootstrap-conda | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/bootstrap-conda b/bootstrap-conda index 447a268f04d..9573a8917ed 100755 --- a/bootstrap-conda +++ b/bootstrap-conda @@ -99,7 +99,8 @@ echo >&2 $0:$LINENO: generate conda environment files ( sed 's/name: sage-build/name: sage/' environment-template.yml echo " - meson" - echo " - meson-python" + echo " - meson-python" + echo " - pytest" echo " # Additional packages providing all dependencies for the Sage library" for pkg in $SAGELIB_SYSTEM_PACKAGES; do echo " - $pkg" From c52827e9f6c1293fb88ee3a9c22d5c16bd1f6bfb Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 16:13:22 +0000 Subject: [PATCH 023/229] improve generate meson script --- generate-meson.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/generate-meson.py b/generate-meson.py index ac77b336d7f..4a8351217c1 100644 --- a/generate-meson.py +++ b/generate-meson.py @@ -54,6 +54,6 @@ meson_build.write(" sources: pyx,\n") meson_build.write(f" subdir: '{folder_rel_to_src}',\n") meson_build.write(' install: true,\n') - meson_build.write(' dependencies: py_dep,\n') + meson_build.write(' dependencies: [py_dep],\n') meson_build.write(' )\n') meson_build.write('endforeach\n') From 677c1f1a0dcd681b4b8efd28a0ebf85298fc6896 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 16:13:40 +0000 Subject: [PATCH 024/229] use sage to run pytest in ci --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 7e8814154dd..fd577c67b79 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -74,4 +74,4 @@ jobs: - name: Test if: success() || failure() shell: bash -l {0} - run: python -m pytest -c src/tox.ini --doctest-modules src + run: ./sage -m pytest -c src/tox.ini --doctest-modules src From fdd1655216cec5f04ba48ba37e2a0f4dbfb3d381 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 30 Oct 2023 17:44:45 +0000 Subject: [PATCH 025/229] add more meson configs --- src/meson.build | 2 + src/sage/__init__.py | 2 + src/sage/meson.build | 1 + src/sage/modules/meson.build | 56 +++++++++++++ src/sage/rings/__init__.py | 1 + src/sage/rings/convert/meson.build | 18 +++++ src/sage/rings/finite_rings/meson.build | 52 ++++++++++++ src/sage/rings/function_field/meson.build | 44 ++++++++++ src/sage/rings/meson.build | 12 +++ src/sage/rings/number_field/meson.build | 56 +++++++++++++ src/sage/rings/padics/meson.build | 75 ++++++++++++++++++ src/sage/rings/polynomial/meson.build | 97 +++++++++++++++++++++++ src/sage/rings/semirings/meson.build | 19 +++++ src/sage/structure/meson.build | 2 +- 14 files changed, 436 insertions(+), 1 deletion(-) create mode 100644 src/sage/__init__.py create mode 100644 src/sage/modules/meson.build create mode 100644 src/sage/rings/__init__.py create mode 100644 src/sage/rings/convert/meson.build create mode 100644 src/sage/rings/finite_rings/meson.build create mode 100644 src/sage/rings/function_field/meson.build create mode 100644 src/sage/rings/number_field/meson.build create mode 100644 src/sage/rings/padics/meson.build create mode 100644 src/sage/rings/polynomial/meson.build create mode 100644 src/sage/rings/semirings/meson.build diff --git a/src/meson.build b/src/meson.build index 3a023d92c68..e49de24cb18 100644 --- a/src/meson.build +++ b/src/meson.build @@ -92,8 +92,10 @@ add_project_arguments('-X preliminary_late_includes_cy28=True', language : 'cyth inc_cpython = include_directories('sage/cpython') inc_rings = include_directories('sage/rings') +inc_rings_finite = include_directories('sage/rings/finite_rings') inc_flint = include_directories('sage/libs/flint') inc_gsl = include_directories('sage/libs/gsl') +inc_ntl = include_directories('sage/libs/ntl') inc_data_structures = include_directories('sage/data_structures') inc_ext = include_directories('sage/ext') inc_src = include_directories('.') diff --git a/src/sage/__init__.py b/src/sage/__init__.py new file mode 100644 index 00000000000..f6eb5289696 --- /dev/null +++ b/src/sage/__init__.py @@ -0,0 +1,2 @@ +# This is only here to mark the sage directory as a Python package +# (so that cython determines the correct module name) diff --git a/src/sage/meson.build b/src/sage/meson.build index 327cf4bf11c..ca59eac42a4 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -39,3 +39,4 @@ subdir('data_structures') subdir('rings') subdir('arith') subdir('combinat') +subdir('modules') diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build new file mode 100644 index 00000000000..b257bd523f7 --- /dev/null +++ b/src/sage/modules/meson.build @@ -0,0 +1,56 @@ +py.install_sources( + 'all.py', + 'complex_double_vector.py', + 'diamond_cutting.py', + 'filtered_vector_space.py', + 'free_module.py', + 'free_module_homspace.py', + 'free_module_integer.py', + 'free_module_morphism.py', + 'free_quadratic_module.py', + 'free_quadratic_module_integer_symmetric.py', + 'matrix_morphism.py', + 'misc.py', + 'module_functors.py', + 'multi_filtered_vector_space.py', + 'quotient_module.py', + 'real_double_vector.py', + 'submodule.py', + 'tensor_operations.py', + 'torsion_quadratic_module.py', + 'tutorial_free_modules.py', + 'vector_callable_symbolic_dense.py', + 'vector_space_homspace.py', + 'vector_space_morphism.py', + 'vector_symbolic_dense.py', + 'vector_symbolic_sparse.py', + subdir: 'sage/modules', +) + +extension_data = { + 'finite_submodule_iter': files('finite_submodule_iter.pyx'), + 'free_module_element': files('free_module_element.pyx'), + 'module': files('module.pyx'), + 'vector_complex_double_dense': files('vector_complex_double_dense.pyx'), + 'vector_double_dense': files('vector_double_dense.pyx'), + 'vector_integer_dense': files('vector_integer_dense.pyx'), + 'vector_integer_sparse': files('vector_integer_sparse.pyx'), + 'vector_mod2_dense': files('vector_mod2_dense.pyx'), + 'vector_modn_dense': files('vector_modn_dense.pyx'), + 'vector_modn_sparse': files('vector_modn_sparse.pyx'), + 'vector_numpy_dense': files('vector_numpy_dense.pyx'), + 'vector_numpy_integer_dense': files('vector_numpy_integer_dense.pyx'), + 'vector_rational_dense': files('vector_rational_dense.pyx'), + 'vector_rational_sparse': files('vector_rational_sparse.pyx'), + 'vector_real_double_dense': files('vector_real_double_dense.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modules', + install: true, + include_directories: [inc_cpython, inc_numpy, inc_rings_finite, inc_ext], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/rings/__init__.py b/src/sage/rings/__init__.py new file mode 100644 index 00000000000..5ef917c1263 --- /dev/null +++ b/src/sage/rings/__init__.py @@ -0,0 +1 @@ +# To make cython create the correct module name diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build new file mode 100644 index 00000000000..cd2fbcdf7a5 --- /dev/null +++ b/src/sage/rings/convert/meson.build @@ -0,0 +1,18 @@ +py.install_sources( + 'all.py', + subdir: 'sage/rings/convert', +) + +extension_data = { + 'mpfi': files('mpfi.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/convert', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cypari2], + ) +endforeach diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build new file mode 100644 index 00000000000..cab9f9a7b7e --- /dev/null +++ b/src/sage/rings/finite_rings/meson.build @@ -0,0 +1,52 @@ +py.install_sources( + 'all.py', + 'conway_polynomials.py', + 'finite_field_constructor.py', + 'finite_field_givaro.py', + 'finite_field_ntl_gf2e.py', + 'finite_field_pari_ffelt.py', + 'finite_field_prime_modn.py', + 'galois_group.py', + 'homset.py', + 'integer_mod_ring.py', + 'maps_finite_field.py', + subdir: 'sage/rings/finite_rings', +) + +extension_data_cpp = { + 'element_givaro': files('element_givaro.pyx'), + 'element_ntl_gf2e': files('element_ntl_gf2e.pyx'), + 'hom_finite_field': files('hom_finite_field.pyx'), + 'hom_finite_field_givaro': files('hom_finite_field_givaro.pyx'), +} +extension_data = { + 'element_base': files('element_base.pyx'), + 'element_pari_ffelt': files('element_pari_ffelt.pyx'), + 'finite_field_base': files('finite_field_base.pyx'), + 'hom_prime_finite_field': files('hom_prime_finite_field.pyx'), + 'integer_mod': files('integer_mod.pyx'), + 'residue_field': files('residue_field.pyx'), + 'residue_field_givaro': files('residue_field_givaro.pyx'), + 'residue_field_ntl_gf2e': files('residue_field_ntl_gf2e.pyx'), + 'residue_field_pari_ffelt': files('residue_field_pari_ffelt.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/finite_rings', + install: true, + include_directories: [inc_cpython, inc_ntl, inc_rings], + dependencies: [py_dep, cysignals, cypari2], + ) +endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/finite_rings', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ntl, inc_rings, inc_ext], + dependencies: [py_dep, cysignals, cypari2], + ) +endforeach diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build new file mode 100644 index 00000000000..5a2013e6844 --- /dev/null +++ b/src/sage/rings/function_field/meson.build @@ -0,0 +1,44 @@ +py.install_sources( + 'all.py', + 'constructor.py', + 'derivations.py', + 'derivations_polymod.py', + 'derivations_rational.py', + 'differential.py', + 'divisor.py', + 'extensions.py', + 'function_field.py', + 'function_field_polymod.py', + 'function_field_rational.py', + 'ideal.py', + 'ideal_polymod.py', + 'ideal_rational.py', + 'maps.py', + 'order.py', + 'order_basis.py', + 'order_polymod.py', + 'order_rational.py', + 'place.py', + 'place_polymod.py', + 'place_rational.py', + 'valuation.py', + 'valuation_ring.py', + subdir: 'sage/rings/function_field', +) + +extension_data = { + 'element': files('element.pyx'), + 'element_polymod': files('element_polymod.pyx'), + 'element_rational': files('element_rational.pyx'), + 'hermite_form_polynomial': files('hermite_form_polynomial.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/function_field', + install: true, + include_directories: [inc_cpython, inc_ntl], + dependencies: [py_dep], + ) +endforeach diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index eeb3e4e5480..05d3b602830 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -103,3 +103,15 @@ foreach name, pyx : extension_data dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, gmp], ) endforeach + +install_subdir('asymptotic', install_dir: sage_install_dir / 'rings') +install_subdir('invariants', install_dir: sage_install_dir / 'rings') +install_subdir('valuation', install_dir: sage_install_dir / 'rings') + +subdir('convert') +subdir('finite_rings') +subdir('function_field') +subdir('number_field') +subdir('padics') +subdir('polynomial') +subdir('semirings') diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build new file mode 100644 index 00000000000..6a1941bccf7 --- /dev/null +++ b/src/sage/rings/number_field/meson.build @@ -0,0 +1,56 @@ +py.install_sources( + 'S_unit_solver.py', + 'all.py', + 'bdd_height.py', + 'class_group.py', + 'galois_group.py', + 'homset.py', + 'maps.py', + 'morphism.py', + 'number_field.py', + 'number_field_ideal.py', + 'number_field_ideal_rel.py', + 'number_field_rel.py', + 'order.py', + 'selmer_group.py', + 'small_primes_of_degree_one.py', + 'splitting_field.py', + 'structure.py', + 'totallyreal_phc.py', + 'totallyreal_rel.py', + 'unit_group.py', + subdir: 'sage/rings/number_field', +) + +extension_data_cpp = { + 'number_field_element': files('number_field_element.pyx'), +} + +extension_data = { + 'number_field_base': files('number_field_base.pyx'), + 'number_field_element_base': files('number_field_element_base.pyx'), + #'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), - needs arb + 'number_field_morphisms': files('number_field_morphisms.pyx'), + 'totallyreal': files('totallyreal.pyx'), + 'totallyreal_data': files('totallyreal_data.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/number_field', + install: true, + include_directories: [inc_cpython, inc_ntl], + dependencies: [py_dep, cysignals, cypari2], + ) +endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/number_field', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ntl], + dependencies: [py_dep, cysignals, cypari2], + ) +endforeach diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build new file mode 100644 index 00000000000..b0549872acd --- /dev/null +++ b/src/sage/rings/padics/meson.build @@ -0,0 +1,75 @@ +py.install_sources( + 'all.py', + 'eisenstein_extension_generic.py', + 'factory.py', + 'generic_nodes.py', + 'lattice_precision.py', + 'local_generic.py', + 'misc.py', + 'padic_base_generic.py', + 'padic_base_leaves.py', + 'padic_extension_generic.py', + 'padic_extension_leaves.py', + 'padic_generic.py', + 'padic_lattice_element.py', + 'padic_valuation.py', + 'precision_error.py', + 'relative_extension_leaves.py', + 'tests.py', + 'tutorial.py', + 'unramified_extension_generic.py', + subdir: 'sage/rings/padics', +) + +extension_data_cpp = { + 'padic_ZZ_pX_CA_element': files('padic_ZZ_pX_CA_element.pyx'), + 'padic_ZZ_pX_CR_element': files('padic_ZZ_pX_CR_element.pyx'), + 'padic_ZZ_pX_FM_element': files('padic_ZZ_pX_FM_element.pyx'), + 'padic_ZZ_pX_element': files('padic_ZZ_pX_element.pyx'), + 'padic_ext_element': files('padic_ext_element.pyx'), + 'pow_computer': files('pow_computer.pyx'), + 'pow_computer_ext': files('pow_computer_ext.pyx'), +} +extension_data = { + 'common_conversion': files('common_conversion.pyx'), + 'local_generic_element': files('local_generic_element.pyx'), + 'morphism': files('morphism.pyx'), + 'padic_capped_absolute_element': files('padic_capped_absolute_element.pyx'), + 'padic_capped_relative_element': files('padic_capped_relative_element.pyx'), + 'padic_fixed_mod_element': files('padic_fixed_mod_element.pyx'), + 'padic_floating_point_element': files('padic_floating_point_element.pyx'), + 'padic_generic_element': files('padic_generic_element.pyx'), + 'padic_printing': files('padic_printing.pyx'), + #'padic_relaxed_element': files('padic_relaxed_element.pyx'), - compilation error (needs libs/linkages) + 'padic_relaxed_errors': files('padic_relaxed_errors.pyx'), + 'pow_computer_flint': files('pow_computer_flint.pyx'), + 'pow_computer_relative': files('pow_computer_relative.pyx'), + 'qadic_flint_CA': files('qadic_flint_CA.pyx'), + 'qadic_flint_CR': files('qadic_flint_CR.pyx'), + 'qadic_flint_FM': files('qadic_flint_FM.pyx'), + 'qadic_flint_FP': files('qadic_flint_FP.pyx'), + 'relative_ramified_CA': files('relative_ramified_CA.pyx'), + 'relative_ramified_CR': files('relative_ramified_CR.pyx'), + 'relative_ramified_FM': files('relative_ramified_FM.pyx'), + 'relative_ramified_FP': files('relative_ramified_FP.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/padics', + install: true, + include_directories: [inc_cpython, inc_ntl, inc_flint, inc_rings_finite, inc_ext], + dependencies: [py_dep, cypari2, cysignals], + ) +endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/padics', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ntl, inc_ext], + dependencies: [py_dep, cypari2, cysignals], + ) +endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build new file mode 100644 index 00000000000..ff267c5c886 --- /dev/null +++ b/src/sage/rings/polynomial/meson.build @@ -0,0 +1,97 @@ +py.install_sources( + 'all.py', + 'binary_form_reduce.py', + 'complex_roots.py', + 'convolution.py', + 'flatten.py', + 'groebner_fan.py', + 'ideal.py', + 'infinite_polynomial_element.py', + 'infinite_polynomial_ring.py', + 'integer_valued_polynomials.py', + 'laurent_polynomial_ideal.py', + 'laurent_polynomial_ring.py', + 'laurent_polynomial_ring_base.py', + 'msolve.py', + 'multi_polynomial_element.py', + 'multi_polynomial_ideal.py', + 'multi_polynomial_ring.py', + 'multi_polynomial_sequence.py', + 'omega.py', + 'ore_function_element.py', + 'ore_function_field.py', + 'ore_polynomial_ring.py', + 'polynomial_element_generic.py', + 'polynomial_fateman.py', + 'polynomial_quotient_ring.py', + 'polynomial_quotient_ring_element.py', + 'polynomial_ring.py', + 'polynomial_ring_constructor.py', + 'polynomial_singular_interface.py', + 'skew_polynomial_ring.py', + 'symmetric_ideal.py', + 'term_order.py', + 'toy_buchberger.py', + 'toy_d_basis.py', + 'toy_variety.py', + subdir: 'sage/rings/polynomial', +) + +extension_data_cpp = { + 'multi_polynomial_ideal_libsingular': files('multi_polynomial_ideal_libsingular.pyx'), + 'multi_polynomial_libsingular': files('multi_polynomial_libsingular.pyx'), + 'polynomial_gf2x': files('polynomial_gf2x.pyx'), + #'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), - needs arb + 'polynomial_integer_dense_ntl': files('polynomial_integer_dense_ntl.pyx'), + 'polynomial_modn_dense_ntl': files('polynomial_modn_dense_ntl.pyx'), + 'polynomial_zz_pex': files('polynomial_zz_pex.pyx'), +} +extension_data = { + 'commutative_polynomial': files('commutative_polynomial.pyx'), + 'cyclotomic': files('cyclotomic.pyx'), + 'evaluation_flint': files('evaluation_flint.pyx'), + 'evaluation_ntl': files('evaluation_ntl.pyx'), + 'hilbert': files('hilbert.pyx'), + 'laurent_polynomial': files('laurent_polynomial.pyx'), + 'laurent_polynomial_mpair': files('laurent_polynomial_mpair.pyx'), + 'multi_polynomial': files('multi_polynomial.pyx'), + 'multi_polynomial_ring_base': files('multi_polynomial_ring_base.pyx'), + 'ore_polynomial_element': files('ore_polynomial_element.pyx'), + #'plural': files('plural.pyx'), - compile error + 'polydict': files('polydict.pyx'), + 'polynomial_compiled': files('polynomial_compiled.pyx'), + #'polynomial_complex_arb': files('polynomial_complex_arb.pyx'), - needs arb + 'polynomial_element': files('polynomial_element.pyx'), + 'polynomial_number_field': files('polynomial_number_field.pyx'), + #'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), - needs arb + 'polynomial_real_mpfr_dense': files('polynomial_real_mpfr_dense.pyx'), + 'polynomial_ring_homomorphism': files('polynomial_ring_homomorphism.pyx'), + 'polynomial_zmod_flint': files('polynomial_zmod_flint.pyx'), + 'real_roots': files('real_roots.pyx'), + 'refine_root': files('refine_root.pyx'), + 'skew_polynomial_element': files('skew_polynomial_element.pyx'), + 'skew_polynomial_finite_field': files('skew_polynomial_finite_field.pyx'), + 'skew_polynomial_finite_order': files('skew_polynomial_finite_order.pyx'), + 'symmetric_reduction': files('symmetric_reduction.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/polynomial', + install: true, + include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings, inc_numpy, inc_ext], + dependencies: [py_dep, cysignals, cypari2], + ) +endforeach + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/polynomial', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings_finite, inc_ext], + dependencies: [py_dep, cysignals, cypari2], + ) +endforeach diff --git a/src/sage/rings/semirings/meson.build b/src/sage/rings/semirings/meson.build new file mode 100644 index 00000000000..0180e4c3059 --- /dev/null +++ b/src/sage/rings/semirings/meson.build @@ -0,0 +1,19 @@ +py.install_sources( + 'all.py', + 'non_negative_integer_semiring.py', + subdir: 'sage/rings/semirings', +) + +extension_data = { + 'tropical_semiring': files('tropical_semiring.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/semirings', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep], + ) +endforeach diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index 4dd15dd48c6..7ea0c457413 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -20,7 +20,7 @@ py.install_sources( 'unique_representation.py', subdir: 'sage/structure', ) -install_subdir('proof', install_dir: sage_install_dir / 'structure' / 'proof') +install_subdir('proof', install_dir: sage_install_dir / 'structure') extension_data = { 'category_object': files('category_object.pyx'), From 119fcfa65f270219b55d12381580a3a26bc25a1d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 31 Oct 2023 00:02:58 +0000 Subject: [PATCH 026/229] add version to pyproject.toml --- pyproject.toml | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/pyproject.toml b/pyproject.toml index 03f93330ac4..1d197d695b2 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,3 +4,7 @@ requires = ['meson-python', 'cython>=3.0.0'] [project] name = 'sagemath' +dynamic = ["version"] + +[tool.setuptools.dynamic] +version = {file = ["VERSION.txt"]} From 0760fb2fd7f563d7d7e8454105a8dcf0867e65ac Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 31 Oct 2023 00:34:44 +0000 Subject: [PATCH 027/229] fix test command in ci --- .github/workflows/ci-meson.yml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index fd577c67b79..de268f733c2 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -66,12 +66,9 @@ jobs: - name: Build shell: bash -l {0} run: | - # Compile as extra step for better error reporting - meson setup builddir - meson compile -j2 -C builddir pip install --no-build-isolation --config-settings=builddir=builddir --editable . - name: Test if: success() || failure() shell: bash -l {0} - run: ./sage -m pytest -c src/tox.ini --doctest-modules src + run: ./sage -python -m pytest -c src/tox.ini --doctest-modules src From f25cbfaef30a2f79bfe2c26972ae02791747d775 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 31 Oct 2023 04:05:31 +0000 Subject: [PATCH 028/229] add more meson build files --- src/meson.build | 11 +++ src/sage/arith/meson.build | 2 +- src/sage/data_structures/__init__.py | 1 + src/sage/data_structures/meson.build | 2 +- src/sage/ext/interpreters/meson.build | 35 ++++++++++ src/sage/ext/meson.build | 23 +++++++ src/sage/interfaces/meson.build | 76 +++++++++++++++++++++ src/sage/libs/meson.build | 18 ++++- src/sage/libs/mpmath/meson.build | 22 ++++++ src/sage/libs/ntl/meson.build | 40 +++++++++++ src/sage/libs/pari/meson.build | 25 +++++++ src/sage/libs/symmetrica/meson.build | 25 +++++++ src/sage/meson.build | 5 ++ src/sage/rings/finite_rings/meson.build | 2 +- src/sage/rings/meson.build | 3 +- src/sage/rings/polynomial/meson.build | 4 ++ src/sage/rings/polynomial/pbori/meson.build | 43 ++++++++++++ src/sage/rings/polynomial/weil/meson.build | 18 +++++ src/sage/tests/meson.build | 54 +++++++++++++++ 19 files changed, 404 insertions(+), 5 deletions(-) create mode 100644 src/sage/data_structures/__init__.py create mode 100644 src/sage/ext/interpreters/meson.build create mode 100644 src/sage/ext/meson.build create mode 100644 src/sage/interfaces/meson.build create mode 100644 src/sage/libs/mpmath/meson.build create mode 100644 src/sage/libs/ntl/meson.build create mode 100644 src/sage/libs/pari/meson.build create mode 100644 src/sage/libs/symmetrica/meson.build create mode 100644 src/sage/rings/polynomial/pbori/meson.build create mode 100644 src/sage/rings/polynomial/weil/meson.build create mode 100644 src/sage/tests/meson.build diff --git a/src/meson.build b/src/meson.build index e49de24cb18..b73764d95dc 100644 --- a/src/meson.build +++ b/src/meson.build @@ -56,6 +56,17 @@ print(cypari2.__file__.replace('__init__.py', '')) cypari2 = declare_dependency( include_directories: inc_cypari2, ) +pari = declare_dependency( + dependencies: [ + cc.find_library('pari'), + ] +) + +mpfr = declare_dependency( + dependencies: [ + cc.find_library('mpfr'), + ] +) # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build index c987f21b7e4..c9f26a1d1c5 100644 --- a/src/sage/arith/meson.build +++ b/src/sage/arith/meson.build @@ -7,7 +7,7 @@ py.install_sources( extension_data = { 'functions': files('functions.pyx'), - 'multi_modular': files('multi_modular.pyx'),# - compilation error + 'multi_modular': files('multi_modular.pyx'), 'numerical_approx': files('numerical_approx.pyx'), 'power': files('power.pyx'), 'rational_reconstruction': files('rational_reconstruction.pyx'), diff --git a/src/sage/data_structures/__init__.py b/src/sage/data_structures/__init__.py new file mode 100644 index 00000000000..a347df6f046 --- /dev/null +++ b/src/sage/data_structures/__init__.py @@ -0,0 +1 @@ +# So that cython creates the correct module names diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index a33c5904eb2..d79435dcd6d 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -20,6 +20,6 @@ foreach name, pyx : extension_data subdir: 'sage/data_structures', install: true, include_directories: [inc_cpython], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build new file mode 100644 index 00000000000..7fc1a937831 --- /dev/null +++ b/src/sage/ext/interpreters/meson.build @@ -0,0 +1,35 @@ +py.install_sources( + 'all.py', + subdir: 'sage/ext/interpreters', +) + +extension_data = { + #'wrapper_cc': files('wrapper_cc.pyx'), - compiliation error + #'wrapper_cdf': files('wrapper_cdf.pyx'), - compiliation error + #'wrapper_el': files('wrapper_el.pyx'), - compiliation error + 'wrapper_py': files('wrapper_py.pyx'), + 'wrapper_rdf': files('wrapper_rdf.pyx'), + #'wrapper_rr': files('wrapper_rr.pyx'), - compiliation error +} +extension_data_cpp = { +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/ext/interpreters', + install: true, + include_directories: [inc_cpython, inc_src], + dependencies: [py_dep, cypari2, cysignals], + ) +endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/ext/interpreters', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_src], + dependencies: [py_dep, cypari2, cysignals], + ) +endforeach diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build new file mode 100644 index 00000000000..b03aaa368ee --- /dev/null +++ b/src/sage/ext/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + 'all__sagemath_objects.py', + subdir: 'sage/ext', +) + +extension_data = { + 'fast_callable': files('fast_callable.pyx'), + 'fast_eval': files('fast_eval.pyx'), + 'memory': files('memory.pyx'), + 'memory_allocator': files('memory_allocator.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/ext', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals, cypari2, gmp], + ) +endforeach + +subdir('interpreters') diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build new file mode 100644 index 00000000000..f3a4c50e13d --- /dev/null +++ b/src/sage/interfaces/meson.build @@ -0,0 +1,76 @@ +py.install_sources( + 'abc.py', + 'all.py', + 'all__sagemath_polyhedra.py', + 'axiom.py', + 'chomp.py', + 'cleaner.py', + 'ecm.py', + 'expect.py', + 'four_ti_2.py', + 'fricas.py', + 'frobby.py', + 'gap.py', + 'gap3.py', + 'gap_workspace.py', + 'genus2reduction.py', + 'gfan.py', + 'giac.py', + 'gnuplot.py', + 'gp.py', + 'interface.py', + 'jmoldata.py', + 'kash.py', + 'kenzo.py', + 'latte.py', + 'lie.py', + 'lisp.py', + 'macaulay2.py', + 'magma.py', + 'magma_free.py', + 'maple.py', + 'mathematica.py', + 'mathics.py', + 'matlab.py', + 'maxima.py', + 'maxima_abstract.py', + 'maxima_lib.py', + 'mupad.py', + 'mwrank.py', + 'octave.py', + 'phc.py', + 'polymake.py', + 'povray.py', + 'psage.py', + 'qepcad.py', + 'qsieve.py', + 'quit.py', + 'r.py', + 'read_data.py', + 'rubik.py', + 'sage0.py', + 'scilab.py', + 'singular.py', + 'sympy.py', + 'sympy_wrapper.py', + 'tab_completion.py', + 'tachyon.py', + 'tests.py', + 'tides.py', + subdir: 'sage/interfaces', +) + +extension_data = { + 'process': files('process.pyx'), + 'sagespawn': files('sagespawn.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/interfaces', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep], + ) +endforeach diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index d75b624652c..aebda9d93e4 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -7,8 +7,10 @@ py.install_sources( subdir: 'sage/libs', ) +extension_data_cpp = { + 'braiding': files('braiding.pyx'), +} extension_data = { - #'braiding': files('braiding.pyx'),# - compile error (ios) 'ecl': files('ecl.pyx'), 'homfly': files('homfly.pyx'), 'libecm': files('libecm.pyx'), @@ -32,7 +34,21 @@ foreach name, pyx : extension_data dependencies: dependencies, ) endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython], + dependencies: dependencies, + ) +endforeach subdir('gmp') subdir('gsl') subdir('flint') +subdir('pari') +subdir('mpmath') +subdir('ntl') +subdir('symmetrica') diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build new file mode 100644 index 00000000000..e581ea7161f --- /dev/null +++ b/src/sage/libs/mpmath/meson.build @@ -0,0 +1,22 @@ +py.install_sources( + '__init__.py', + 'all.py', + subdir: 'sage/libs/mpmath', +) + +extension_data = { + 'ext_impl': files('ext_impl.pyx'), + 'ext_libmp': files('ext_libmp.pyx'), + 'ext_main': files('ext_main.pyx'), + 'utils': files('utils.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/mpmath', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals, cypari2, gmp, mpfr], + ) +endforeach diff --git a/src/sage/libs/ntl/meson.build b/src/sage/libs/ntl/meson.build new file mode 100644 index 00000000000..ae5d9880c15 --- /dev/null +++ b/src/sage/libs/ntl/meson.build @@ -0,0 +1,40 @@ +py.install_sources( + '__init__.py', + 'all.py', + subdir: 'sage/libs/ntl', +) + +extension_data_cpp = { + 'convert': files('convert.pyx'), + 'error': files('error.pyx'), + 'ntl_GF2': files('ntl_GF2.pyx'), + 'ntl_GF2E': files('ntl_GF2E.pyx'), + 'ntl_GF2EContext': files('ntl_GF2EContext.pyx'), + 'ntl_GF2EX': files('ntl_GF2EX.pyx'), + 'ntl_GF2X': files('ntl_GF2X.pyx'), + 'ntl_ZZ': files('ntl_ZZ.pyx'), + 'ntl_ZZX': files('ntl_ZZX.pyx'), + 'ntl_ZZ_p': files('ntl_ZZ_p.pyx'), + 'ntl_ZZ_pContext': files('ntl_ZZ_pContext.pyx'), + 'ntl_ZZ_pE': files('ntl_ZZ_pE.pyx'), + 'ntl_ZZ_pEContext': files('ntl_ZZ_pEContext.pyx'), + 'ntl_ZZ_pEX': files('ntl_ZZ_pEX.pyx'), + 'ntl_ZZ_pX': files('ntl_ZZ_pX.pyx'), + 'ntl_lzz_p': files('ntl_lzz_p.pyx'), + 'ntl_lzz_pContext': files('ntl_lzz_pContext.pyx'), + 'ntl_lzz_pX': files('ntl_lzz_pX.pyx'), + 'ntl_mat_GF2': files('ntl_mat_GF2.pyx'), + 'ntl_mat_GF2E': files('ntl_mat_GF2E.pyx'), + 'ntl_mat_ZZ': files('ntl_mat_ZZ.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/ntl', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings_finite], + override_options: ['cython_language=cpp'], + dependencies: [py_dep, cysignals, ntl], + ) +endforeach diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build new file mode 100644 index 00000000000..93c5c33bac2 --- /dev/null +++ b/src/sage/libs/pari/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + '__init__.py', + 'all.py', + 'tests.py', + subdir: 'sage/libs/pari', +) + +extension_data = { + 'convert_flint': files('convert_flint.pyx'), + 'convert_gmp': files('convert_gmp.pyx'), + 'convert_sage': files('convert_sage.pyx'), + 'convert_sage_complex_double': files('convert_sage_complex_double.pyx'), + 'convert_sage_real_double': files('convert_sage_real_double.pyx'), + 'misc': files('misc.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/pari', + install: true, + include_directories: [inc_flint, inc_cpython], + dependencies: [py_dep, cypari2, cysignals], + ) +endforeach diff --git a/src/sage/libs/symmetrica/meson.build b/src/sage/libs/symmetrica/meson.build new file mode 100644 index 00000000000..178212c1a1e --- /dev/null +++ b/src/sage/libs/symmetrica/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + '__init__.py', + 'all.py', + subdir: 'sage/libs/symmetrica', +) + +extension_data = { + 'symmetrica': files('symmetrica.pyx'), +} + +# Cannot be found by pkg-config +symmetrica = declare_dependency( + dependencies: [ + cc.find_library('symmetrica'), + ] +) + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/symmetrica', + install: true, + dependencies: [py_dep, cysignals, symmetrica], + ) +endforeach diff --git a/src/sage/meson.build b/src/sage/meson.build index ca59eac42a4..85fb4c6abe5 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -5,6 +5,8 @@ no_processing = [ 'repl', 'doctest', 'features', + 'tensor', + 'topology', 'typeset', ] foreach package : no_processing @@ -40,3 +42,6 @@ subdir('rings') subdir('arith') subdir('combinat') subdir('modules') +subdir('tests') +subdir('ext') +subdir('interfaces') diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build index cab9f9a7b7e..81289341f3b 100644 --- a/src/sage/rings/finite_rings/meson.build +++ b/src/sage/rings/finite_rings/meson.build @@ -37,7 +37,7 @@ foreach name, pyx : extension_data subdir: 'sage/rings/finite_rings', install: true, include_directories: [inc_cpython, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, cypari2], + dependencies: [py_dep, cysignals, cypari2, gmp], ) endforeach foreach name, pyx : extension_data_cpp diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 05d3b602830..83316ccc845 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -92,6 +92,7 @@ mpfi = declare_dependency( cc.find_library('mpfi'), ] ) +gsl = dependency('gsl') foreach name, pyx : extension_data py.extension_module(name, @@ -100,7 +101,7 @@ foreach name, pyx : extension_data install: true, #cython_args: ['-I', inc_gsl], include_directories: [inc_cpython, inc_flint, inc_gsl], - dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, gmp], + dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index ff267c5c886..a682949dbf6 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -36,6 +36,7 @@ py.install_sources( 'toy_variety.py', subdir: 'sage/rings/polynomial', ) +install_subdir('padics', install_dir: sage_install_dir / 'polynomial') extension_data_cpp = { 'multi_polynomial_ideal_libsingular': files('multi_polynomial_ideal_libsingular.pyx'), @@ -95,3 +96,6 @@ foreach name, pyx : extension_data_cpp dependencies: [py_dep, cysignals, cypari2], ) endforeach + +subdir('pbori') +subdir('weil') diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build new file mode 100644 index 00000000000..25a800888d8 --- /dev/null +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -0,0 +1,43 @@ +py.install_sources( + 'PyPolyBoRi.py', + '__init__.py', + 'blocks.py', + 'cnf.py', + 'easy_polynomials.py', + 'fglm.py', + 'frontend.py', + 'gbcore.py', + 'gbrefs.py', + 'heuristics.py', + 'interpolate.py', + 'interred.py', + 'll.py', + 'nf.py', + 'parallel.py', + 'randompoly.py', + 'rank.py', + 'specialsets.py', + 'statistics.py', + subdir: 'sage/rings/polynomial/pbori', +) + +extension_data_cpp = { + 'pbori': files('pbori.pyx'), +} + +brial = declare_dependency( + dependencies: [ + cc.find_library('brial', required: false), + ] +) + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/polynomial/pbori', + install: true, + include_directories: [inc_src, inc_cpython, inc_ext], + override_options: ['cython_language=cpp'], + dependencies: [py_dep, cysignals, brial], + ) +endforeach diff --git a/src/sage/rings/polynomial/weil/meson.build b/src/sage/rings/polynomial/weil/meson.build new file mode 100644 index 00000000000..f4d65307c3a --- /dev/null +++ b/src/sage/rings/polynomial/weil/meson.build @@ -0,0 +1,18 @@ +py.install_sources( + 'all.py', + subdir: 'sage/rings/polynomial/weil', +) + +extension_data = { + 'weil_polynomials': files('weil_polynomials.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings/polynomial/weil', + install: true, + include_directories: [inc_flint, inc_src, inc_cpython], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/tests/meson.build b/src/sage/tests/meson.build new file mode 100644 index 00000000000..928e1666f71 --- /dev/null +++ b/src/sage/tests/meson.build @@ -0,0 +1,54 @@ +py.install_sources( + '__init__.py', + 'all.py', + 'article_heuberger_krenn_kropf_fsm-in-sage.py', + 'arxiv_0812_2725.py', + 'benchmark.py', + 'book_schilling_zabrocki_kschur_primer.py', + 'book_stein_ent.py', + 'book_stein_modform.py', + 'cmdline.py', + 'combinatorial_hopf_algebras.py', + 'finite_poset.py', + 'functools_partial_src.py', + 'gap_packages.py', + 'gosper-sum.py', + 'lazy_imports.py', + 'modular_group_cohomology.py', + 'numpy.py', + 'parigp.py', + 'startup.py', + 'symbolic-series.py', + 'sympy.py', + 'test_deprecation.py', + subdir: 'sage/tests', +) + +install_subdir('books', install_dir: sage_install_dir / 'tests') +install_subdir('memcheck', install_dir: sage_install_dir / 'tests') + +extension_data = { + 'cython': files('cython.pyx'), +} +extension_data_cpp = { + 'stl_vector': files('stl_vector.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/tests', + install: true, + dependencies: [py_dep], + ) +endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/tests', + install: true, + include_directories: [inc_cpython], + override_options : ['cython_language=cpp'], + dependencies: [py_dep, cysignals], + ) +endforeach From 5930aff3d61d44c02a3617eebe5877b10a5a6aec Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 31 Oct 2023 05:51:24 +0000 Subject: [PATCH 029/229] More meson files --- src/meson.build | 1 + src/sage/groups/meson.build | 48 +++++++++++++ src/sage/libs/pari/meson.build | 2 +- src/sage/matrix/__init__.py | 1 + src/sage/matrix/meson.build | 90 +++++++++++++++++++++++++ src/sage/meson.build | 2 + src/sage/rings/convert/meson.build | 2 +- src/sage/rings/meson.build | 21 ++++-- src/sage/rings/number_field/meson.build | 6 +- src/sage/rings/padics/meson.build | 4 +- src/sage/rings/polynomial/meson.build | 16 ++--- src/sage/structure/meson.build | 2 +- 12 files changed, 174 insertions(+), 21 deletions(-) create mode 100644 src/sage/groups/meson.build create mode 100644 src/sage/matrix/__init__.py create mode 100644 src/sage/matrix/meson.build diff --git a/src/meson.build b/src/meson.build index b73764d95dc..73b203404b1 100644 --- a/src/meson.build +++ b/src/meson.build @@ -107,6 +107,7 @@ inc_rings_finite = include_directories('sage/rings/finite_rings') inc_flint = include_directories('sage/libs/flint') inc_gsl = include_directories('sage/libs/gsl') inc_ntl = include_directories('sage/libs/ntl') +inc_arb = include_directories('sage/libs/arb') inc_data_structures = include_directories('sage/data_structures') inc_ext = include_directories('sage/ext') inc_src = include_directories('.') diff --git a/src/sage/groups/meson.build b/src/sage/groups/meson.build new file mode 100644 index 00000000000..e03f61b1ec4 --- /dev/null +++ b/src/sage/groups/meson.build @@ -0,0 +1,48 @@ +py.install_sources( + 'all.py', + 'artin.py', + 'braid.py', + 'cactus_group.py', + 'class_function.py', + 'conjugacy_classes.py', + 'cubic_braid.py', + 'finitely_presented.py', + 'finitely_presented_catalog.py', + 'finitely_presented_named.py', + 'fqf_orthogonal.py', + 'free_group.py', + 'galois_group.py', + 'generic.py', + 'group_exp.py', + 'group_semidirect_product.py', + 'groups_catalog.py', + 'indexed_free_group.py', + 'kernel_subgroup.py', + 'libgap_group.py', + 'libgap_mixin.py', + 'libgap_morphism.py', + 'pari_group.py', + 'raag.py', + subdir: 'sage/groups', +) +install_subdir('abelian_gps', install_dir: sage_install_dir / 'groups') +install_subdir('additive_abelian', install_dir: sage_install_dir / 'groups') +install_subdir('affine_gps', install_dir: sage_install_dir / 'groups') +install_subdir('lie_gps', install_dir: sage_install_dir / 'groups') +install_subdir('misc_gps', install_dir: sage_install_dir / 'groups') + +extension_data = { + 'group': files('group.pyx'), + 'libgap_wrapper': files('libgap_wrapper.pyx'), + 'old': files('old.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/groups', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep], + ) +endforeach diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 93c5c33bac2..45aeb21b4eb 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -20,6 +20,6 @@ foreach name, pyx : extension_data subdir: 'sage/libs/pari', install: true, include_directories: [inc_flint, inc_cpython], - dependencies: [py_dep, cypari2, cysignals], + dependencies: [py_dep, cypari2, cysignals, gmp], ) endforeach diff --git a/src/sage/matrix/__init__.py b/src/sage/matrix/__init__.py new file mode 100644 index 00000000000..165aea9af28 --- /dev/null +++ b/src/sage/matrix/__init__.py @@ -0,0 +1 @@ +# Because of relative imports diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build new file mode 100644 index 00000000000..8a4ef527163 --- /dev/null +++ b/src/sage/matrix/meson.build @@ -0,0 +1,90 @@ +py.install_sources( + 'all.py', + 'all__sagemath_meataxe.py', + 'benchmark.py', + 'berlekamp_massey.py', + 'compute_J_ideal.py', + 'docs.py', + 'matrix_integer_dense_hnf.py', + 'matrix_integer_dense_saturation.py', + 'matrix_misc.py', + 'matrix_space.py', + 'operation_table.py', + 'special.py', + 'symplectic_basis.py', + 'tests.py', + subdir: 'sage/matrix', +) + +# Cannot be found via pkg-config +meataxe = declare_dependency( + dependencies: [ + cc.find_library('meataxe', required: false), + ] +) + +extension_data = { + 'action': files('action.pyx'), + 'args': files('args.pyx'), + 'change_ring': files('change_ring.pyx'), + 'constructor': files('constructor.pyx'), + 'echelon_matrix': files('echelon_matrix.pyx'), + 'matrix0': files('matrix0.pyx'), + 'matrix1': files('matrix1.pyx'), + 'matrix2': files('matrix2.pyx'), + 'matrix_cdv': files('matrix_cdv.pyx'), + 'matrix_complex_ball_dense': files('matrix_complex_ball_dense.pyx'), + 'matrix_complex_double_dense': files('matrix_complex_double_dense.pyx'), + 'matrix_dense': files('matrix_dense.pyx'), + 'matrix_double_dense': files('matrix_double_dense.pyx'), + 'matrix_double_sparse': files('matrix_double_sparse.pyx'), + 'matrix_gap': files('matrix_gap.pyx'), + 'matrix_generic_dense': files('matrix_generic_dense.pyx'), + 'matrix_generic_sparse': files('matrix_generic_sparse.pyx'), + 'matrix_gf2e_dense': files('matrix_gf2e_dense.pyx'), + #'matrix_gfpn_dense': files('matrix_gfpn_dense.pyx'), - requires meataxe + 'matrix_integer_dense': files('matrix_integer_dense.pyx'), + 'matrix_mod2_dense': files('matrix_mod2_dense.pyx'), + #'matrix_mpolynomial_dense': files('matrix_mpolynomial_dense.pyx'), - compilation error + 'matrix_numpy_dense': files('matrix_numpy_dense.pyx'), + 'matrix_numpy_integer_dense': files('matrix_numpy_integer_dense.pyx'), + 'matrix_polynomial_dense': files('matrix_polynomial_dense.pyx'), + 'matrix_rational_sparse': files('matrix_rational_sparse.pyx'), + 'matrix_real_double_dense': files('matrix_real_double_dense.pyx'), + 'matrix_sparse': files('matrix_sparse.pyx'), + 'matrix_symbolic_dense': files('matrix_symbolic_dense.pyx'), + 'matrix_symbolic_sparse': files('matrix_symbolic_sparse.pyx'), + 'matrix_window': files('matrix_window.pyx'), + 'misc': files('misc.pyx'), + 'misc_flint': files('misc_flint.pyx'), + 'misc_mpfr': files('misc_mpfr.pyx'), + 'strassen': files('strassen.pyx'), +} +extension_data_cpp = { + 'matrix_cyclo_dense': files('matrix_cyclo_dense.pyx'), + 'matrix_modn_dense_double': files('matrix_modn_dense_double.pyx'), + 'matrix_modn_dense_float': files('matrix_modn_dense_float.pyx'), + 'matrix_integer_sparse': files('matrix_integer_sparse.pyx'), + 'matrix_modn_sparse': files('matrix_modn_sparse.pyx'), + 'matrix_rational_dense': files('matrix_rational_dense.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/matrix', + install: true, + include_directories: [inc_cpython, inc_numpy, inc_flint, inc_ext, inc_rings, inc_rings_finite, inc_arb, inc_ntl], + dependencies: [py_dep, cysignals, cypari2, gmp, mpfr], + ) +endforeach +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/matrix', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_numpy, inc_flint, inc_ext, inc_rings_finite, inc_rings, inc_arb, inc_ntl], + dependencies: [py_dep, cysignals, cypari2, gmp, mpfr], + ) +endforeach diff --git a/src/sage/meson.build b/src/sage/meson.build index 85fb4c6abe5..daf388cc35a 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -45,3 +45,5 @@ subdir('modules') subdir('tests') subdir('ext') subdir('interfaces') +subdir('groups') +subdir('matrix') diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build index cd2fbcdf7a5..a4dff8bd420 100644 --- a/src/sage/rings/convert/meson.build +++ b/src/sage/rings/convert/meson.build @@ -13,6 +13,6 @@ foreach name, pyx : extension_data subdir: 'sage/rings/convert', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cypari2], + dependencies: [py_dep, cypari2, mpfi], ) endforeach diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 83316ccc845..a2efe401fbe 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -47,7 +47,7 @@ extension_data = { 'abc': files('abc.pyx'), #'bernmm': files('bernmm.pyx'), - compilation error #'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), - compilation error - #'complex_arb': files('complex_arb.pyx'), - needs arb + 'complex_arb': files('complex_arb.pyx'), 'complex_conversion': files('complex_conversion.pyx'), 'complex_double': files('complex_double.pyx'), 'complex_interval': files('complex_interval.pyx'), @@ -70,7 +70,7 @@ extension_data = { 'power_series_ring_element': files('power_series_ring_element.pyx'), 'puiseux_series_ring_element': files('puiseux_series_ring_element.pyx'), 'rational': files('rational.pyx'), - #'real_arb': files('real_arb.pyx'), - needs arb + 'real_arb': files('real_arb.pyx'), 'real_double': files('real_double.pyx'), 'real_double_element_gsl': files('real_double_element_gsl.pyx'), 'real_interval_absolute': files('real_interval_absolute.pyx'), @@ -93,15 +93,26 @@ mpfi = declare_dependency( ] ) gsl = dependency('gsl') +# Cannot be found by pkg-config +flint = declare_dependency( + dependencies: [ + cc.find_library('flint'), + ] +) +# Cannot be found via pkg-config +arb = declare_dependency( + dependencies: [ + cc.find_library('arb'), + ] +) foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/rings', install: true, - #cython_args: ['-I', inc_gsl], - include_directories: [inc_cpython, inc_flint, inc_gsl], - dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl], + include_directories: [inc_cpython, inc_flint, inc_gsl, inc_arb], + dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl, flint, arb], ) endforeach diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index 6a1941bccf7..b9183257abb 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -24,12 +24,12 @@ py.install_sources( extension_data_cpp = { 'number_field_element': files('number_field_element.pyx'), + 'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), } extension_data = { 'number_field_base': files('number_field_base.pyx'), 'number_field_element_base': files('number_field_element_base.pyx'), - #'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), - needs arb 'number_field_morphisms': files('number_field_morphisms.pyx'), 'totallyreal': files('totallyreal.pyx'), 'totallyreal_data': files('totallyreal_data.pyx'), @@ -50,7 +50,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/rings/number_field', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl], - dependencies: [py_dep, cysignals, cypari2], + include_directories: [inc_cpython, inc_ntl, inc_arb, inc_flint], + dependencies: [py_dep, cysignals, cypari2, ntl, mpfi, arb], ) endforeach diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index b0549872acd..71ca8a1e91f 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -60,7 +60,7 @@ foreach name, pyx : extension_data subdir: 'sage/rings/padics', install: true, include_directories: [inc_cpython, inc_ntl, inc_flint, inc_rings_finite, inc_ext], - dependencies: [py_dep, cypari2, cysignals], + dependencies: [py_dep, cypari2, cysignals, gmp], ) endforeach foreach name, pyx : extension_data_cpp @@ -70,6 +70,6 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_ntl, inc_ext], - dependencies: [py_dep, cypari2, cysignals], + dependencies: [py_dep, cypari2, cysignals, gmp], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index a682949dbf6..72dc152ad14 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -39,10 +39,11 @@ py.install_sources( install_subdir('padics', install_dir: sage_install_dir / 'polynomial') extension_data_cpp = { + 'evaluation_ntl': files('evaluation_ntl.pyx'), 'multi_polynomial_ideal_libsingular': files('multi_polynomial_ideal_libsingular.pyx'), 'multi_polynomial_libsingular': files('multi_polynomial_libsingular.pyx'), 'polynomial_gf2x': files('polynomial_gf2x.pyx'), - #'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), - needs arb + 'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), 'polynomial_integer_dense_ntl': files('polynomial_integer_dense_ntl.pyx'), 'polynomial_modn_dense_ntl': files('polynomial_modn_dense_ntl.pyx'), 'polynomial_zz_pex': files('polynomial_zz_pex.pyx'), @@ -51,7 +52,6 @@ extension_data = { 'commutative_polynomial': files('commutative_polynomial.pyx'), 'cyclotomic': files('cyclotomic.pyx'), 'evaluation_flint': files('evaluation_flint.pyx'), - 'evaluation_ntl': files('evaluation_ntl.pyx'), 'hilbert': files('hilbert.pyx'), 'laurent_polynomial': files('laurent_polynomial.pyx'), 'laurent_polynomial_mpair': files('laurent_polynomial_mpair.pyx'), @@ -61,10 +61,10 @@ extension_data = { #'plural': files('plural.pyx'), - compile error 'polydict': files('polydict.pyx'), 'polynomial_compiled': files('polynomial_compiled.pyx'), - #'polynomial_complex_arb': files('polynomial_complex_arb.pyx'), - needs arb + 'polynomial_complex_arb': files('polynomial_complex_arb.pyx'), 'polynomial_element': files('polynomial_element.pyx'), 'polynomial_number_field': files('polynomial_number_field.pyx'), - #'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), - needs arb + 'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), 'polynomial_real_mpfr_dense': files('polynomial_real_mpfr_dense.pyx'), 'polynomial_ring_homomorphism': files('polynomial_ring_homomorphism.pyx'), 'polynomial_zmod_flint': files('polynomial_zmod_flint.pyx'), @@ -81,8 +81,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/polynomial', install: true, - include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings, inc_numpy, inc_ext], - dependencies: [py_dep, cysignals, cypari2], + include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings, inc_numpy, inc_ext, inc_arb], + dependencies: [py_dep, cysignals, cypari2, gmp, mpfi, arb], ) endforeach @@ -92,8 +92,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/rings/polynomial', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings_finite, inc_ext], - dependencies: [py_dep, cysignals, cypari2], + include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings_finite, inc_ext, inc_arb, inc_rings], + dependencies: [py_dep, cysignals, cypari2, ntl, mpfr, mpfi, arb], ) endforeach diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index 7ea0c457413..dfd0c074ed9 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -50,6 +50,6 @@ foreach name, pyx : extension_data subdir: 'sage/structure', install: true, include_directories: [inc_cpython, inc_rings, inc_src], - dependencies: [py_dep, gmpy2, cysignals], + dependencies: [py_dep, gmpy2, cysignals, gmp], ) endforeach From 100a35d56592716282fb73c9760f4e8ec9be65ff Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 2 Nov 2023 10:55:27 +0000 Subject: [PATCH 030/229] Add interpreters --- src/sage/ext/meson.build | 13 +++++++++++++ 1 file changed, 13 insertions(+) diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index b03aaa368ee..4ac3a117bef 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -20,4 +20,17 @@ foreach name, pyx : extension_data ) endforeach +interpreters = custom_target( + 'sage.ext.interpreters', + output: 'all.py', + input: '../../sage_setup/autogen/interpreters/__init__.py', + command: [py, '-m', 'sage_setup.autogen.interpreters', meson.current_source_dir() / 'interpreters'], + # This is actually against the Meson philosophy, which does not like in-source builds. + # So normally you would do something like the following (left for a follow-up) + # command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], + env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..'], + install: true, + install_dir: 'interpreters' +) + subdir('interpreters') From 111b145468f51c081875f85e0b79209d0f795826 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 2 Nov 2023 14:40:32 +0000 Subject: [PATCH 031/229] And another round of meson files --- generate-meson.py | 171 +++++++++++++----- src/meson.build | 8 + .../finite_dimensional_algebras/meson.build | 22 +++ src/sage/algebras/fusion_rings/meson.build | 37 ++++ src/sage/algebras/hecke_algebras/meson.build | 10 + src/sage/algebras/letterplace/meson.build | 21 +++ src/sage/algebras/lie_algebras/meson.build | 38 ++++ .../lie_conformal_algebras/meson.build | 24 +++ src/sage/algebras/meson.build | 67 +++++++ src/sage/algebras/quantum_groups/meson.build | 11 ++ src/sage/algebras/quatalg/meson.build | 25 +++ .../quatalg/quaternion_algebra_cython.pyx | 2 +- src/sage/algebras/steenrod/meson.build | 10 + src/sage/all.py | 3 +- src/sage/combinat/chas/meson.build | 7 + .../cluster_algebra_quiver/meson.build | 11 ++ src/sage/combinat/crystals/meson.build | 53 ++++++ src/sage/combinat/designs/meson.build | 40 ++++ src/sage/combinat/integer_lists/meson.build | 22 +++ src/sage/combinat/matrices/meson.build | 23 +++ src/sage/combinat/meson.build | 20 +- src/sage/combinat/ncsf_qsym/meson.build | 10 + src/sage/combinat/ncsym/meson.build | 8 + src/sage/combinat/path_tableaux/meson.build | 10 + src/sage/combinat/posets/meson.build | 33 ++++ .../rigged_configurations/meson.build | 40 ++++ src/sage/combinat/root_system/meson.build | 74 ++++++++ src/sage/combinat/sf/meson.build | 29 +++ src/sage/combinat/species/meson.build | 23 +++ src/sage/combinat/words/meson.build | 35 ++++ src/sage/graphs/base/meson.build | 41 +++++ src/sage/graphs/cliquer.pyx | 2 +- src/sage/graphs/generators/meson.build | 29 +++ .../graphs/graph_decompositions/meson.build | 55 ++++++ src/sage/graphs/meson.build | 109 +++++++++++ src/sage/libs/arb/meson.build | 20 ++ src/sage/libs/coxeter3/meson.build | 23 +++ src/sage/libs/eclib/meson.build | 25 +++ src/sage/libs/flint/meson.build | 2 +- src/sage/libs/gap/meson.build | 30 +++ src/sage/libs/giac/meson.build | 21 +++ src/sage/libs/glpk/meson.build | 19 ++ src/sage/libs/lcalc/meson.build | 21 +++ src/sage/libs/linbox/meson.build | 19 ++ src/sage/libs/meson.build | 19 +- src/sage/libs/pari/meson.build | 2 +- src/sage/libs/singular/meson.build | 26 +++ src/sage/matrix/meson.build | 23 ++- src/sage/meson.build | 5 + src/sage/modules/meson.build | 6 +- src/sage/modules/with_basis/meson.build | 24 +++ src/sage/monoids/meson.build | 30 +++ src/sage/quadratic_forms/meson.build | 49 +++++ src/sage/rings/all.py | 3 +- src/sage/rings/function_field/meson.build | 2 + src/sage/rings/meson.build | 69 ++++--- src/sage/rings/padics/meson.build | 2 +- src/sage/rings/padics/pow_computer_ext.pyx | 2 +- src/sage/rings/polynomial/meson.build | 4 +- src/sage/symbolic/__init__.py | 1 + src/sage/symbolic/meson.build | 69 +++++++ 61 files changed, 1547 insertions(+), 92 deletions(-) create mode 100644 src/sage/algebras/finite_dimensional_algebras/meson.build create mode 100644 src/sage/algebras/fusion_rings/meson.build create mode 100644 src/sage/algebras/hecke_algebras/meson.build create mode 100644 src/sage/algebras/letterplace/meson.build create mode 100644 src/sage/algebras/lie_algebras/meson.build create mode 100644 src/sage/algebras/lie_conformal_algebras/meson.build create mode 100644 src/sage/algebras/meson.build create mode 100644 src/sage/algebras/quantum_groups/meson.build create mode 100644 src/sage/algebras/quatalg/meson.build create mode 100644 src/sage/algebras/steenrod/meson.build create mode 100644 src/sage/combinat/chas/meson.build create mode 100644 src/sage/combinat/cluster_algebra_quiver/meson.build create mode 100644 src/sage/combinat/crystals/meson.build create mode 100644 src/sage/combinat/designs/meson.build create mode 100644 src/sage/combinat/integer_lists/meson.build create mode 100644 src/sage/combinat/matrices/meson.build create mode 100644 src/sage/combinat/ncsf_qsym/meson.build create mode 100644 src/sage/combinat/ncsym/meson.build create mode 100644 src/sage/combinat/path_tableaux/meson.build create mode 100644 src/sage/combinat/posets/meson.build create mode 100644 src/sage/combinat/rigged_configurations/meson.build create mode 100644 src/sage/combinat/root_system/meson.build create mode 100644 src/sage/combinat/sf/meson.build create mode 100644 src/sage/combinat/species/meson.build create mode 100644 src/sage/combinat/words/meson.build create mode 100644 src/sage/graphs/base/meson.build create mode 100644 src/sage/graphs/generators/meson.build create mode 100644 src/sage/graphs/graph_decompositions/meson.build create mode 100644 src/sage/graphs/meson.build create mode 100644 src/sage/libs/arb/meson.build create mode 100644 src/sage/libs/coxeter3/meson.build create mode 100644 src/sage/libs/eclib/meson.build create mode 100644 src/sage/libs/gap/meson.build create mode 100644 src/sage/libs/giac/meson.build create mode 100644 src/sage/libs/glpk/meson.build create mode 100644 src/sage/libs/lcalc/meson.build create mode 100644 src/sage/libs/linbox/meson.build create mode 100644 src/sage/libs/singular/meson.build create mode 100644 src/sage/modules/with_basis/meson.build create mode 100644 src/sage/monoids/meson.build create mode 100644 src/sage/quadratic_forms/meson.build create mode 100644 src/sage/symbolic/__init__.py create mode 100644 src/sage/symbolic/meson.build diff --git a/generate-meson.py b/generate-meson.py index 4a8351217c1..c0648ad3b65 100644 --- a/generate-meson.py +++ b/generate-meson.py @@ -4,6 +4,7 @@ import argparse import sys from pathlib import Path +from types import SimpleNamespace parser = argparse.ArgumentParser(description='Generate meson.build file for a given folder.') parser.add_argument('folder', type=str, nargs='?', default='.', @@ -15,45 +16,133 @@ args = parser.parse_args() +def run(folder: Path): + dry_run = args.dry_run + force = args.force + + if not folder.is_dir(): + print(f'Error: {folder} is not a directory') + return + folder_rel_to_src = folder.relative_to('src') + + python_files = sorted(list(folder.glob('*.py'))) + cython_files = sorted(list(folder.glob('*.pyx'))) + + + if not python_files and not cython_files: + print(f'Error: {folder} does not contain any python or cython files') + return + + def get_metadata(path: Path): + with open(path, 'r') as file: + metadata = SimpleNamespace() + metadata.path = path + metadata.is_cpp = any(line.startswith('# distutils: language = c++') for line in file) + + metadata.libraries = [] + for line in file: + if line.startswith('# distutils: libraries ='): + libraries = line.split('libraries =')[1].strip().split() + libraries = [library.replace('NTL_LIBRARIES', 'ntl').replace('SINGULAR_LIBRARIES', 'singular') for library in libraries] + metadata.libraries += libraries + + metadata.inc_dirs = [] + c_file = path.with_suffix('.c') + if c_file.exists(): + metadata.not_yet_on_conda = False + with open(c_file, 'r') as c_file: + contents = c_file.read() + known_inc_dirs = { + 'sage/cpython': 'inc_cpython', + 'sage/rings': 'inc_rings', + 'sage/rings/finite_rings': 'inc_rings_finite', + 'sage/libs/flint': 'inc_flint', + 'sage/libs/gsl': 'inc_gsl', + 'sage/libs/ntl': 'inc_ntl', + 'sage/libs/arb': 'inc_arb', + 'sage/data_structures': 'inc_data_structures', + 'sage/ext': 'inc_ext', + } + for known_inc_dir in known_inc_dirs: + if known_inc_dir in contents: + metadata.inc_dirs.append(known_inc_dirs[known_inc_dir]) + else: + metadata.not_yet_on_conda = metadata.is_cpp is False + + return metadata + + cython_files = [get_metadata(file) for file in cython_files] + cython_c_files = [file for file in cython_files if not file.is_cpp] + cython_cpp_files = [file for file in cython_files if file.is_cpp] + all_libraries = sorted(set(library for file in cython_files for library in file.libraries)) + all_inc_dirs = sorted(set(inc_dir for file in cython_files for inc_dir in file.inc_dirs)) + subdirs = sorted(list(folder.glob('*/'))) + + meson_build_path = folder / 'meson.build' + if not dry_run and not force and meson_build_path.exists(): + print(f'Error: {meson_build_path} already exists, use --force to overwrite') + return + + with open(meson_build_path, 'w') if not dry_run else sys.stdout as meson_build: + meson_build.write('py.install_sources(\n') + for file in python_files: + meson_build.write(f" '{file.name}',\n") + meson_build.write(f" subdir: '{folder_rel_to_src}',\n") + meson_build.write(')\n') + + if cython_c_files: + meson_build.write('\n') + meson_build.write('extension_data = {\n') + for file in cython_c_files: + if file.not_yet_on_conda: + meson_build.write(f" # '{file.path.stem}': files('{file.path.name}'), # not yet on conda\n") + else: + meson_build.write(f" '{file.path.stem}': files('{file.path.name}'),\n") + meson_build.write('}\n\n') + + meson_build.write('foreach name, pyx : extension_data\n') + meson_build.write(" py.extension_module(name,\n") + meson_build.write(" sources: pyx,\n") + meson_build.write(f" subdir: '{folder_rel_to_src}',\n") + meson_build.write(' install: true,\n') + meson_build.write(f" include_directories: [{', '.join(all_inc_dirs)}],\n") + meson_build.write(f" dependencies: [py_dep, cysignals, gmp{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") + meson_build.write(' )\n') + meson_build.write('endforeach\n') + + if cython_cpp_files: + meson_build.write('\n') + meson_build.write('extension_data_cpp = {\n') + for file in cython_cpp_files: + if file.not_yet_on_conda: + meson_build.write(f" # '{file.path.stem}': files('{file.path.name}'), # not yet on conda\n") + else: + meson_build.write(f" '{file.path.stem}': files('{file.path.name}'),\n") + meson_build.write('}\n\n') + + meson_build.write('foreach name, pyx : extension_data_cpp\n') + meson_build.write(" py.extension_module(name,\n") + meson_build.write(" sources: pyx,\n") + meson_build.write(f" subdir: '{folder_rel_to_src}',\n") + meson_build.write(' install: true,\n') + meson_build.write(' override_options : [\'cython_language=cpp\'],\n') + meson_build.write(f" include_directories: [{', '.join(all_inc_dirs)}],\n") + meson_build.write(f" dependencies: [py_dep, cysignals, gmp{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") + meson_build.write(' )\n') + meson_build.write('endforeach\n') + + meson_build.write('\n') + for subdir in subdirs: + if subdir.name.startswith('_') or subdir.name.startswith('.'): + continue + if not list(subdir.glob('*.py*')): + continue + + if not list(subdir.glob('*.pyx')): + meson_build.write(f"install_subdir('{subdir.name}', install_dir: sage_install_dir / '{folder_rel_to_src.relative_to('sage')}')\n") + else: + meson_build.write(f"subdir('{subdir.name}')\n") + run(subdir) + folder = Path(args.folder) -dry_run = args.dry_run -force = args.force - -if not folder.is_dir(): - print(f'Error: {folder} is not a directory') - sys.exit(1) -folder_rel_to_src = folder.relative_to('src') - -python_files = list(folder.glob('*.py')) -cython_files = list(folder.glob('*.pyx')) -python_files.sort() -cython_files.sort() - -if not python_files and not cython_files: - print(f'Error: {folder} does not contain any python or cython files') - sys.exit(1) - -meson_build_path = folder / 'meson.build' -if not dry_run and not force and meson_build_path.exists(): - print(f'Error: {meson_build_path} already exists, use --force to overwrite') - sys.exit(1) - -with open(meson_build_path, 'w') if not dry_run else sys.stdout as meson_build: - meson_build.write('py.install_sources(\n') - for file in python_files: - meson_build.write(f" '{file.name}',\n") - meson_build.write(f" subdir: '{folder_rel_to_src}',\n") - meson_build.write(')\n\n') - - meson_build.write('extension_data = {\n') - for file in cython_files: - meson_build.write(f" '{file.stem}': files('{file.name}'),\n") - meson_build.write('}\n\n') - meson_build.write('foreach name, pyx : extension_data\n') - meson_build.write(" py.extension_module(name,\n") - meson_build.write(" sources: pyx,\n") - meson_build.write(f" subdir: '{folder_rel_to_src}',\n") - meson_build.write(' install: true,\n') - meson_build.write(' dependencies: [py_dep],\n') - meson_build.write(' )\n') - meson_build.write('endforeach\n') +run(folder) diff --git a/src/meson.build b/src/meson.build index 73b203404b1..63faf358971 100644 --- a/src/meson.build +++ b/src/meson.build @@ -68,6 +68,13 @@ mpfr = declare_dependency( ] ) +# Cannot be found by pkg-config +flint = declare_dependency( + dependencies: [ + cc.find_library('flint'), + ] +) + # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path inc_cython = run_command(py, @@ -108,6 +115,7 @@ inc_flint = include_directories('sage/libs/flint') inc_gsl = include_directories('sage/libs/gsl') inc_ntl = include_directories('sage/libs/ntl') inc_arb = include_directories('sage/libs/arb') +inc_iml = include_directories('sage/libs') inc_data_structures = include_directories('sage/data_structures') inc_ext = include_directories('sage/ext') inc_src = include_directories('.') diff --git a/src/sage/algebras/finite_dimensional_algebras/meson.build b/src/sage/algebras/finite_dimensional_algebras/meson.build new file mode 100644 index 00000000000..3aac590596f --- /dev/null +++ b/src/sage/algebras/finite_dimensional_algebras/meson.build @@ -0,0 +1,22 @@ +py.install_sources( + 'all.py', + 'finite_dimensional_algebra.py', + 'finite_dimensional_algebra_ideal.py', + 'finite_dimensional_algebra_morphism.py', + subdir: 'sage/algebras/finite_dimensional_algebras', +) + +extension_data = { + 'finite_dimensional_algebra_element': files('finite_dimensional_algebra_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras/finite_dimensional_algebras', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build new file mode 100644 index 00000000000..df9ab85023e --- /dev/null +++ b/src/sage/algebras/fusion_rings/meson.build @@ -0,0 +1,37 @@ +py.install_sources( + 'all.py', + 'f_matrix.py', + 'fusion_double.py', + 'fusion_ring.py', + subdir: 'sage/algebras/fusion_rings', +) + +extension_data = { + 'fast_parallel_fusion_ring_braid_repn': files('fast_parallel_fusion_ring_braid_repn.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras/fusion_rings', + install: true, + include_directories: [inc_numpy, inc_ntl], + dependencies: [py_dep, cysignals], + ) +endforeach + +extension_data_cpp = { + 'fast_parallel_fmats_methods': files('fast_parallel_fmats_methods.pyx'), + 'shm_managers': files('shm_managers.pyx'), + 'poly_tup_engine': files('poly_tup_engine.pyx'), +} +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras/fusion_rings', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_numpy, inc_ntl], + dependencies: [py_dep, cysignals], + ) +endforeach diff --git a/src/sage/algebras/hecke_algebras/meson.build b/src/sage/algebras/hecke_algebras/meson.build new file mode 100644 index 00000000000..2ae6f3da80c --- /dev/null +++ b/src/sage/algebras/hecke_algebras/meson.build @@ -0,0 +1,10 @@ +py.install_sources( + 'all.py', + 'ariki_koike_algebra.py', + 'cubic_hecke_algebra.py', + 'cubic_hecke_base_ring.py', + 'cubic_hecke_matrix_rep.py', + subdir: 'sage/algebras/hecke_algebras', +) + + diff --git a/src/sage/algebras/letterplace/meson.build b/src/sage/algebras/letterplace/meson.build new file mode 100644 index 00000000000..7ad5d465c6d --- /dev/null +++ b/src/sage/algebras/letterplace/meson.build @@ -0,0 +1,21 @@ +py.install_sources( + 'all.py', + subdir: 'sage/algebras/letterplace', +) + +extension_data = { + # 'free_algebra_element_letterplace': files('free_algebra_element_letterplace.pyx'), # not yet on conda + # 'free_algebra_letterplace': files('free_algebra_letterplace.pyx'), # not yet on conda + # 'letterplace_ideal': files('letterplace_ideal.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras/letterplace', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/algebras/lie_algebras/meson.build b/src/sage/algebras/lie_algebras/meson.build new file mode 100644 index 00000000000..74e9975ebd7 --- /dev/null +++ b/src/sage/algebras/lie_algebras/meson.build @@ -0,0 +1,38 @@ +py.install_sources( + 'abelian.py', + 'affine_lie_algebra.py', + 'all.py', + 'bch.py', + 'classical_lie_algebra.py', + 'examples.py', + 'free_lie_algebra.py', + 'heisenberg.py', + 'lie_algebra.py', + 'morphism.py', + 'nilpotent_lie_algebra.py', + 'onsager.py', + 'poincare_birkhoff_witt.py', + 'quotient.py', + 'rank_two_heisenberg_virasoro.py', + 'structure_coefficients.py', + 'subalgebra.py', + 'symplectic_derivation.py', + 'verma_module.py', + 'virasoro.py', + subdir: 'sage/algebras/lie_algebras', +) + +extension_data = { + 'lie_algebra_element': files('lie_algebra_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras/lie_algebras', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/algebras/lie_conformal_algebras/meson.build b/src/sage/algebras/lie_conformal_algebras/meson.build new file mode 100644 index 00000000000..500fa71e42a --- /dev/null +++ b/src/sage/algebras/lie_conformal_algebras/meson.build @@ -0,0 +1,24 @@ +py.install_sources( + 'abelian_lie_conformal_algebra.py', + 'affine_lie_conformal_algebra.py', + 'all.py', + 'bosonic_ghosts_lie_conformal_algebra.py', + 'examples.py', + 'fermionic_ghosts_lie_conformal_algebra.py', + 'finitely_freely_generated_lca.py', + 'free_bosons_lie_conformal_algebra.py', + 'free_fermions_lie_conformal_algebra.py', + 'freely_generated_lie_conformal_algebra.py', + 'graded_lie_conformal_algebra.py', + 'lie_conformal_algebra.py', + 'lie_conformal_algebra_element.py', + 'lie_conformal_algebra_with_basis.py', + 'lie_conformal_algebra_with_structure_coefs.py', + 'n2_lie_conformal_algebra.py', + 'neveu_schwarz_lie_conformal_algebra.py', + 'virasoro_lie_conformal_algebra.py', + 'weyl_lie_conformal_algebra.py', + subdir: 'sage/algebras/lie_conformal_algebras', +) + + diff --git a/src/sage/algebras/meson.build b/src/sage/algebras/meson.build new file mode 100644 index 00000000000..d7878ee1373 --- /dev/null +++ b/src/sage/algebras/meson.build @@ -0,0 +1,67 @@ +py.install_sources( + 'affine_nil_temperley_lieb.py', + 'algebra.py', + 'all.py', + 'askey_wilson.py', + 'associated_graded.py', + 'catalog.py', + 'cellular_basis.py', + 'clifford_algebra.py', + 'cluster_algebra.py', + 'commutative_dga.py', + 'down_up_algebra.py', + 'finite_gca.py', + 'free_algebra.py', + 'free_algebra_element.py', + 'free_algebra_quotient.py', + 'free_algebra_quotient_element.py', + 'free_zinbiel_algebra.py', + 'group_algebra.py', + 'hall_algebra.py', + 'iwahori_hecke_algebra.py', + 'jordan_algebra.py', + 'nil_coxeter_algebra.py', + 'orlik_solomon.py', + 'orlik_terao.py', + 'q_commuting_polynomials.py', + 'q_system.py', + 'quantum_clifford.py', + 'quantum_matrix_coordinate_algebra.py', + 'quaternion_algebra.py', + 'quaternion_algebra_element.py', + 'rational_cherednik_algebra.py', + 'schur_algebra.py', + 'shuffle_algebra.py', + 'splitting_algebra.py', + 'tensor_algebra.py', + 'weyl_algebra.py', + 'yangian.py', + 'yokonuma_hecke_algebra.py', + subdir: 'sage/algebras', +) + +extension_data = { + 'clifford_algebra_element': files('clifford_algebra_element.pyx'), + 'exterior_algebra_groebner': files('exterior_algebra_groebner.pyx'), + 'octonion_algebra': files('octonion_algebra.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + +subdir('finite_dimensional_algebras') +subdir('fusion_rings') +subdir('hecke_algebras') +subdir('letterplace') +subdir('lie_algebras') +subdir('lie_conformal_algebras') +subdir('quantum_groups') +subdir('quatalg') +subdir('steenrod') diff --git a/src/sage/algebras/quantum_groups/meson.build b/src/sage/algebras/quantum_groups/meson.build new file mode 100644 index 00000000000..c3f0d5c7fb5 --- /dev/null +++ b/src/sage/algebras/quantum_groups/meson.build @@ -0,0 +1,11 @@ +py.install_sources( + 'ace_quantum_onsager.py', + 'all.py', + 'fock_space.py', + 'q_numbers.py', + 'quantum_group_gap.py', + 'representations.py', + subdir: 'sage/algebras/quantum_groups', +) + + diff --git a/src/sage/algebras/quatalg/meson.build b/src/sage/algebras/quatalg/meson.build new file mode 100644 index 00000000000..8042e99b64c --- /dev/null +++ b/src/sage/algebras/quatalg/meson.build @@ -0,0 +1,25 @@ +m = dependency('m', required: false) + +py.install_sources( + 'all.py', + 'quaternion_algebra.py', + subdir: 'sage/algebras/quatalg', +) + + +extension_data_cpp = { + 'quaternion_algebra_cython': files('quaternion_algebra_cython.pyx'), + 'quaternion_algebra_element': files('quaternion_algebra_element.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/algebras/quatalg', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_flint, inc_ntl, inc_ext], + dependencies: [py_dep, cysignals, gmp, m, ntl, flint], + ) +endforeach + diff --git a/src/sage/algebras/quatalg/quaternion_algebra_cython.pyx b/src/sage/algebras/quatalg/quaternion_algebra_cython.pyx index 983e2515c04..130c9f5d43a 100644 --- a/src/sage/algebras/quatalg/quaternion_algebra_cython.pyx +++ b/src/sage/algebras/quatalg/quaternion_algebra_cython.pyx @@ -35,7 +35,7 @@ from sage.matrix.matrix_space import MatrixSpace from sage.matrix.matrix_integer_dense cimport Matrix_integer_dense from sage.matrix.matrix_rational_dense cimport Matrix_rational_dense -from .quaternion_algebra_element cimport QuaternionAlgebraElement_rational_field +from sage.algebras.quatalg.quaternion_algebra_element cimport QuaternionAlgebraElement_rational_field from sage.libs.gmp.mpz cimport mpz_t, mpz_lcm, mpz_init, mpz_set, mpz_clear, mpz_init_set, mpz_mul, mpz_fdiv_q, mpz_cmp_si diff --git a/src/sage/algebras/steenrod/meson.build b/src/sage/algebras/steenrod/meson.build new file mode 100644 index 00000000000..ad6a151b788 --- /dev/null +++ b/src/sage/algebras/steenrod/meson.build @@ -0,0 +1,10 @@ +py.install_sources( + 'all.py', + 'steenrod_algebra.py', + 'steenrod_algebra_bases.py', + 'steenrod_algebra_misc.py', + 'steenrod_algebra_mult.py', + subdir: 'sage/algebras/steenrod', +) + + diff --git a/src/sage/all.py b/src/sage/all.py index b54610c819d..e397cdee266 100644 --- a/src/sage/all.py +++ b/src/sage/all.py @@ -85,7 +85,8 @@ from sage.arith.all import * from sage.matrix.all import * -from sage.symbolic.all import * +# Cannot find ginac (and I don't know where to look for it) +#from sage.symbolic.all import * from sage.modules.all import * from sage.monoids.all import * from sage.algebras.all import * diff --git a/src/sage/combinat/chas/meson.build b/src/sage/combinat/chas/meson.build new file mode 100644 index 00000000000..55138497547 --- /dev/null +++ b/src/sage/combinat/chas/meson.build @@ -0,0 +1,7 @@ +py.install_sources( + 'all.py', + 'fsym.py', + 'wqsym.py', + subdir: 'sage/combinat/chas', +) + diff --git a/src/sage/combinat/cluster_algebra_quiver/meson.build b/src/sage/combinat/cluster_algebra_quiver/meson.build new file mode 100644 index 00000000000..33f6c253ed1 --- /dev/null +++ b/src/sage/combinat/cluster_algebra_quiver/meson.build @@ -0,0 +1,11 @@ +py.install_sources( + 'all.py', + 'cluster_seed.py', + 'interact.py', + 'mutation_class.py', + 'mutation_type.py', + 'quiver.py', + 'quiver_mutation_type.py', + subdir: 'sage/combinat/cluster_algebra_quiver', +) + diff --git a/src/sage/combinat/crystals/meson.build b/src/sage/combinat/crystals/meson.build new file mode 100644 index 00000000000..ffe467683a7 --- /dev/null +++ b/src/sage/combinat/crystals/meson.build @@ -0,0 +1,53 @@ +py.install_sources( + 'affine.py', + 'affine_factorization.py', + 'affinization.py', + 'alcove_path.py', + 'all.py', + 'bkk_crystals.py', + 'catalog.py', + 'catalog_elementary_crystals.py', + 'catalog_infinity_crystals.py', + 'catalog_kirillov_reshetikhin.py', + 'crystals.py', + 'direct_sum.py', + 'elementary_crystals.py', + 'fast_crystals.py', + 'fully_commutative_stable_grothendieck.py', + 'generalized_young_walls.py', + 'highest_weight_crystals.py', + 'induced_structure.py', + 'infinity_crystals.py', + 'kac_modules.py', + 'kirillov_reshetikhin.py', + 'kyoto_path_model.py', + 'littelmann_path.py', + 'monomial_crystals.py', + 'multisegments.py', + 'mv_polytopes.py', + 'pbw_crystal.py', + 'polyhedral_realization.py', + 'star_crystal.py', + 'subcrystal.py', + 'tensor_product.py', + 'virtual_crystal.py', + subdir: 'sage/combinat/crystals', +) + +extension_data = { + 'letters': files('letters.pyx'), + 'pbw_datum': files('pbw_datum.pyx'), + 'spins': files('spins.pyx'), + 'tensor_product_element': files('tensor_product_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/crystals', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build new file mode 100644 index 00000000000..6dd274ca93b --- /dev/null +++ b/src/sage/combinat/designs/meson.build @@ -0,0 +1,40 @@ +py.install_sources( + 'all.py', + 'bibd.py', + 'block_design.py', + 'covering_array.py', + 'covering_design.py', + 'database.py', + 'design_catalog.py', + 'difference_family.py', + 'difference_matrices.py', + 'ext_rep.py', + 'group_divisible_designs.py', + 'incidence_structures.py', + 'latin_squares.py', + 'orthogonal_arrays.py', + 'orthogonal_arrays_build_recursive.py', + 'resolvable_bibd.py', + 'steiner_quadruple_systems.py', + 'twographs.py', + subdir: 'sage/combinat/designs', +) + +extension_data = { + 'designs_pyx': files('designs_pyx.pyx'), + 'evenly_distributed_sets': files('evenly_distributed_sets.pyx'), + 'gen_quadrangles_with_spread': files('gen_quadrangles_with_spread.pyx'), + 'orthogonal_arrays_find_recursive': files('orthogonal_arrays_find_recursive.pyx'), + 'subhypergraph_search': files('subhypergraph_search.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/designs', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/integer_lists/meson.build b/src/sage/combinat/integer_lists/meson.build new file mode 100644 index 00000000000..c4968073c27 --- /dev/null +++ b/src/sage/combinat/integer_lists/meson.build @@ -0,0 +1,22 @@ +py.install_sources( + '__init__.py', + 'lists.py', + 'nn.py', + subdir: 'sage/combinat/integer_lists', +) + +extension_data = { + 'base': files('base.pyx'), + 'invlex': files('invlex.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/integer_lists', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/matrices/meson.build b/src/sage/combinat/matrices/meson.build new file mode 100644 index 00000000000..3d1cda177a1 --- /dev/null +++ b/src/sage/combinat/matrices/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + 'all.py', + 'dlxcpp.py', + 'hadamard_matrix.py', + 'latin.py', + subdir: 'sage/combinat/matrices', +) + +extension_data_cpp = { + # 'dancing_links': files('dancing_links.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/matrices', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/meson.build b/src/sage/combinat/meson.build index 6573914b5d8..b6899dc3e3d 100644 --- a/src/sage/combinat/meson.build +++ b/src/sage/combinat/meson.build @@ -145,7 +145,23 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/combinat', install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach + +install_subdir('chas', install_dir: sage_install_dir / 'combinat') +install_subdir('cluster_algebra_quiver', install_dir: sage_install_dir / 'combinat') +subdir('crystals') +subdir('designs') +subdir('integer_lists') +subdir('matrices') +install_subdir('ncsf_qsym', install_dir: sage_install_dir / 'combinat') +install_subdir('ncsym', install_dir: sage_install_dir / 'combinat') +install_subdir('path_tableaux', install_dir: sage_install_dir / 'combinat') +subdir('posets') +subdir('rigged_configurations') +subdir('root_system') +install_subdir('sf', install_dir: sage_install_dir / 'combinat') +install_subdir('species', install_dir: sage_install_dir / 'combinat') +subdir('words') diff --git a/src/sage/combinat/ncsf_qsym/meson.build b/src/sage/combinat/ncsf_qsym/meson.build new file mode 100644 index 00000000000..e30fce36206 --- /dev/null +++ b/src/sage/combinat/ncsf_qsym/meson.build @@ -0,0 +1,10 @@ +py.install_sources( + 'all.py', + 'combinatorics.py', + 'generic_basis_code.py', + 'ncsf.py', + 'qsym.py', + 'tutorial.py', + subdir: 'sage/combinat/ncsf_qsym', +) + diff --git a/src/sage/combinat/ncsym/meson.build b/src/sage/combinat/ncsym/meson.build new file mode 100644 index 00000000000..d254c159ad3 --- /dev/null +++ b/src/sage/combinat/ncsym/meson.build @@ -0,0 +1,8 @@ +py.install_sources( + 'all.py', + 'bases.py', + 'dual.py', + 'ncsym.py', + subdir: 'sage/combinat/ncsym', +) + diff --git a/src/sage/combinat/path_tableaux/meson.build b/src/sage/combinat/path_tableaux/meson.build new file mode 100644 index 00000000000..4247e6ad15e --- /dev/null +++ b/src/sage/combinat/path_tableaux/meson.build @@ -0,0 +1,10 @@ +py.install_sources( + 'all.py', + 'catalog.py', + 'dyck_path.py', + 'frieze.py', + 'path_tableau.py', + 'semistandard.py', + subdir: 'sage/combinat/path_tableaux', +) + diff --git a/src/sage/combinat/posets/meson.build b/src/sage/combinat/posets/meson.build new file mode 100644 index 00000000000..17faf8c1d80 --- /dev/null +++ b/src/sage/combinat/posets/meson.build @@ -0,0 +1,33 @@ +py.install_sources( + 'all.py', + 'cartesian_product.py', + 'd_complete.py', + 'elements.py', + 'forest.py', + 'hasse_diagram.py', + 'incidence_algebras.py', + 'lattices.py', + 'linear_extensions.py', + 'mobile.py', + 'moebius_algebra.py', + 'poset_examples.py', + 'posets.py', + subdir: 'sage/combinat/posets', +) + +extension_data = { + 'hasse_cython': files('hasse_cython.pyx'), + 'hasse_cython_flint': files('hasse_cython_flint.pyx'), + 'linear_extension_iterator': files('linear_extension_iterator.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/posets', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/rigged_configurations/meson.build b/src/sage/combinat/rigged_configurations/meson.build new file mode 100644 index 00000000000..b4ba8f3101a --- /dev/null +++ b/src/sage/combinat/rigged_configurations/meson.build @@ -0,0 +1,40 @@ +py.install_sources( + 'all.py', + 'bij_abstract_class.py', + 'bij_infinity.py', + 'bij_type_A.py', + 'bij_type_A2_dual.py', + 'bij_type_A2_even.py', + 'bij_type_A2_odd.py', + 'bij_type_B.py', + 'bij_type_C.py', + 'bij_type_D.py', + 'bij_type_D_tri.py', + 'bij_type_D_twisted.py', + 'bij_type_E67.py', + 'bijection.py', + 'kleber_tree.py', + 'kr_tableaux.py', + 'rc_crystal.py', + 'rc_infinity.py', + 'rigged_configuration_element.py', + 'rigged_configurations.py', + 'tensor_product_kr_tableaux.py', + 'tensor_product_kr_tableaux_element.py', + subdir: 'sage/combinat/rigged_configurations', +) + +extension_data = { + 'rigged_partition': files('rigged_partition.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/rigged_configurations', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/root_system/meson.build b/src/sage/combinat/root_system/meson.build new file mode 100644 index 00000000000..ac4f179719b --- /dev/null +++ b/src/sage/combinat/root_system/meson.build @@ -0,0 +1,74 @@ +py.install_sources( + 'all.py', + 'ambient_space.py', + 'associahedron.py', + 'braid_move_calculator.py', + 'branching_rules.py', + 'cartan_matrix.py', + 'cartan_type.py', + 'coxeter_group.py', + 'coxeter_matrix.py', + 'coxeter_type.py', + 'dynkin_diagram.py', + 'extended_affine_weyl_group.py', + 'fundamental_group.py', + 'hecke_algebra_representation.py', + 'integrable_representations.py', + 'non_symmetric_macdonald_polynomials.py', + 'pieri_factors.py', + 'plot.py', + 'reflection_group_complex.py', + 'reflection_group_real.py', + 'root_lattice_realization_algebras.py', + 'root_lattice_realizations.py', + 'root_space.py', + 'root_system.py', + 'type_A.py', + 'type_A_affine.py', + 'type_A_infinity.py', + 'type_B.py', + 'type_BC_affine.py', + 'type_B_affine.py', + 'type_C.py', + 'type_C_affine.py', + 'type_D.py', + 'type_D_affine.py', + 'type_E.py', + 'type_E_affine.py', + 'type_F.py', + 'type_F_affine.py', + 'type_G.py', + 'type_G_affine.py', + 'type_H.py', + 'type_I.py', + 'type_Q.py', + 'type_affine.py', + 'type_dual.py', + 'type_folded.py', + 'type_marked.py', + 'type_reducible.py', + 'type_relabel.py', + 'type_super_A.py', + 'weight_lattice_realizations.py', + 'weight_space.py', + 'weyl_characters.py', + 'weyl_group.py', + subdir: 'sage/combinat/root_system', +) + +extension_data = { + 'braid_orbit': files('braid_orbit.pyx'), + 'reflection_group_c': files('reflection_group_c.pyx'), + 'reflection_group_element': files('reflection_group_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/root_system', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/combinat/sf/meson.build b/src/sage/combinat/sf/meson.build new file mode 100644 index 00000000000..2d305a3bee6 --- /dev/null +++ b/src/sage/combinat/sf/meson.build @@ -0,0 +1,29 @@ +py.install_sources( + 'all.py', + 'character.py', + 'classical.py', + 'dual.py', + 'elementary.py', + 'hall_littlewood.py', + 'hecke.py', + 'homogeneous.py', + 'jack.py', + 'k_dual.py', + 'kfpoly.py', + 'llt.py', + 'macdonald.py', + 'monomial.py', + 'multiplicative.py', + 'new_kschur.py', + 'ns_macdonald.py', + 'orthogonal.py', + 'orthotriang.py', + 'powersum.py', + 'schur.py', + 'sf.py', + 'sfa.py', + 'symplectic.py', + 'witt.py', + subdir: 'sage/combinat/sf', +) + diff --git a/src/sage/combinat/species/meson.build b/src/sage/combinat/species/meson.build new file mode 100644 index 00000000000..a7bf282707c --- /dev/null +++ b/src/sage/combinat/species/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + 'all.py', + 'characteristic_species.py', + 'composition_species.py', + 'cycle_species.py', + 'empty_species.py', + 'functorial_composition_species.py', + 'generating_series.py', + 'library.py', + 'linear_order_species.py', + 'misc.py', + 'partition_species.py', + 'permutation_species.py', + 'product_species.py', + 'recursive_species.py', + 'set_species.py', + 'species.py', + 'structure.py', + 'subset_species.py', + 'sum_species.py', + subdir: 'sage/combinat/species', +) + diff --git a/src/sage/combinat/words/meson.build b/src/sage/combinat/words/meson.build new file mode 100644 index 00000000000..bf2980a07af --- /dev/null +++ b/src/sage/combinat/words/meson.build @@ -0,0 +1,35 @@ +py.install_sources( + 'abstract_word.py', + 'all.py', + 'alphabet.py', + 'finite_word.py', + 'infinite_word.py', + 'lyndon_word.py', + 'morphic.py', + 'morphism.py', + 'paths.py', + 'shuffle_product.py', + 'suffix_trees.py', + 'word.py', + 'word_generators.py', + 'word_infinite_datatypes.py', + 'word_options.py', + 'words.py', + subdir: 'sage/combinat/words', +) + +extension_data = { + 'word_char': files('word_char.pyx'), + 'word_datatypes': files('word_datatypes.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/combinat/words', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build new file mode 100644 index 00000000000..573a22616e6 --- /dev/null +++ b/src/sage/graphs/base/meson.build @@ -0,0 +1,41 @@ +py.install_sources( + 'all.py', + 'overview.py', + subdir: 'sage/graphs/base', +) + +extension_data = { + 'dense_graph': files('dense_graph.pyx'), + 'graph_backends': files('graph_backends.pyx'), + #'sparse_graph': files('sparse_graph.pyx'), # compilation error + 'static_dense_graph': files('static_dense_graph.pyx'), + 'static_sparse_backend': files('static_sparse_backend.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs/base', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals], + ) +endforeach + +extension_data_cpp = { + 'boost_graph': files('boost_graph.pyx'), + 'c_graph': files('c_graph.pyx'), + #'static_sparse_graph': files('static_sparse_graph.pyx'), # compilation error +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs/base', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/graphs/cliquer.pyx b/src/sage/graphs/cliquer.pyx index 6f232d97e16..2800efa5d37 100644 --- a/src/sage/graphs/cliquer.pyx +++ b/src/sage/graphs/cliquer.pyx @@ -35,7 +35,7 @@ from cysignals.memory cimport sig_free from cysignals.signals cimport sig_on, sig_off -cdef extern from "sage/graphs/cliquer/cl.c": +cdef extern from "cliquer/cl.c": cdef int sage_clique_max(graph_t *g, int ** list_of_vertices) cdef int sage_all_clique_max(graph_t *g, int ** list_of_vertices) cdef int sage_clique_number(graph_t *g) diff --git a/src/sage/graphs/generators/meson.build b/src/sage/graphs/generators/meson.build new file mode 100644 index 00000000000..28b7bcccbdf --- /dev/null +++ b/src/sage/graphs/generators/meson.build @@ -0,0 +1,29 @@ +py.install_sources( + 'all.py', + 'basic.py', + 'chessboard.py', + 'classical_geometries.py', + 'degree_sequence.py', + 'families.py', + 'intersection.py', + 'platonic_solids.py', + 'random.py', + 'smallgraphs.py', + 'world_map.py', + subdir: 'sage/graphs/generators', +) + +extension_data = { + 'distance_regular': files('distance_regular.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs/generators', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build new file mode 100644 index 00000000000..3c877e0134a --- /dev/null +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -0,0 +1,55 @@ +tdlib = dependency('tdlib', required: false) + +py.install_sources( + 'all.py', + 'all__sagemath_tdlib.py', + 'modular_decomposition.py', + subdir: 'sage/graphs/graph_decompositions', +) + +extension_data = { + 'bandwidth': files('bandwidth.pyx'), + 'cutwidth': files('cutwidth.pyx'), + 'fast_digraph': files('fast_digraph.pyx'), + 'graph_products': files('graph_products.pyx'), + 'rankwidth': files('rankwidth.pyx'), + 'tree_decomposition': files('tree_decomposition.pyx'), + 'vertex_separation': files('vertex_separation.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs/graph_decompositions', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals], + ) +endforeach + +extension_data_cpp = { + 'clique_separators': files('clique_separators.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs/graph_decompositions', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals], + ) +endforeach + +if tdlib.found() + py.extension_module('tdlib', + sources: 'tdlib.pyx', + subdir: 'sage/graphs/graph_decompositions', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, tdlib], + ) +endif + diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build new file mode 100644 index 00000000000..2ee1d5b2c34 --- /dev/null +++ b/src/sage/graphs/meson.build @@ -0,0 +1,109 @@ +bliss = dependency('bliss', required: false) +mcqd = dependency('mcqd', required: false) + +py.install_sources( + 'all.py', + 'all__sagemath_bliss.py', + 'all__sagemath_mcqd.py', + 'all__sagemath_tdlib.py', + 'bipartite_graph.py', + 'digraph.py', + 'digraph_generators.py', + 'domination.py', + 'dot2tex_utils.py', + 'generic_graph.py', + 'graph.py', + 'graph_database.py', + 'graph_editor.py', + 'graph_generators.py', + 'graph_input.py', + 'graph_latex.py', + 'graph_list.py', + 'graph_plot.py', + 'graph_plot_js.py', + 'hypergraph_generators.py', + 'isgci.py', + 'lovasz_theta.py', + 'orientations.py', + 'partial_cube.py', + 'pq_trees.py', + 'print_graphs.py', + 'schnyder.py', + 'tutte_polynomial.py', + subdir: 'sage/graphs', +) + +extension_data = { + 'asteroidal_triples': files('asteroidal_triples.pyx'), + 'centrality': files('centrality.pyx'), + 'chrompoly': files('chrompoly.pyx'), + 'cliquer': files('cliquer.pyx'), + 'comparability': files('comparability.pyx'), + 'connectivity': files('connectivity.pyx'), + 'convexity_properties': files('convexity_properties.pyx'), + 'distances_all_pairs': files('distances_all_pairs.pyx'), + 'generic_graph_pyx': files('generic_graph_pyx.pyx'), + 'genus': files('genus.pyx'), + 'graph_generators_pyx': files('graph_generators_pyx.pyx'), + 'hyperbolicity': files('hyperbolicity.pyx'), + 'independent_sets': files('independent_sets.pyx'), + 'isoperimetric_inequalities': files('isoperimetric_inequalities.pyx'), + 'line_graph': files('line_graph.pyx'), + 'matchpoly': files('matchpoly.pyx'), + 'planarity': files('planarity.pyx'), + 'spanning_tree': files('spanning_tree.pyx'), + 'strongly_regular_db': files('strongly_regular_db.pyx'), + 'trees': files('trees.pyx'), + 'views': files('views.pyx'), + 'weakly_chordal': files('weakly_chordal.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + +extension_data_cpp = { + 'edge_connectivity': files('edge_connectivity.pyx'), + 'graph_coloring': files('graph_coloring.pyx'), + 'path_enumeration': files('path_enumeration.pyx'), + 'traversals': files('traversals.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/graphs', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach +if bliss.found() + py.extension_module('bliss', + sources: files('bliss.pyx'), + subdir: 'sage/graphs', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, bliss], + ) +endif +if mcqd.found() + py.extension_module('mcqd', + sources: files('mcqd.pyx'), + subdir: 'sage/graphs', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, mcqd], + ) +endif + +subdir('base') +subdir('generators') +subdir('graph_decompositions') diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build new file mode 100644 index 00000000000..d229f513c9a --- /dev/null +++ b/src/sage/libs/arb/meson.build @@ -0,0 +1,20 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/arb', +) + +extension_data = { + 'arb_version': files('arb_version.pyx'), + 'arith': files('arith.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/arb', + install: true, + include_directories: [inc_arb, inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/coxeter3/meson.build b/src/sage/libs/coxeter3/meson.build new file mode 100644 index 00000000000..877508d7916 --- /dev/null +++ b/src/sage/libs/coxeter3/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + '__init__.py', + 'all__sagemath_coxeter3.py', + 'coxeter_group.py', + subdir: 'sage/libs/coxeter3', +) + + +extension_data_cpp = { + # 'coxeter': files('coxeter.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/coxeter3', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals, coxeter3], + ) +endforeach + diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build new file mode 100644 index 00000000000..559e86ac2cb --- /dev/null +++ b/src/sage/libs/eclib/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + '__init__.py', + 'all.py', + 'constructor.py', + 'interface.py', + subdir: 'sage/libs/eclib', +) + +extension_data = { + # 'homspace': files('homspace.pyx'), # not yet on conda + # 'mat': files('mat.pyx'), # not yet on conda + # 'mwrank': files('mwrank.pyx'), # not yet on conda + # 'newforms': files('newforms.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/eclib', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index 7d64f9d44fd..fdfbdb86180 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -18,6 +18,6 @@ foreach name, pyx : extension_data subdir: 'sage/libs/flint', install: true, include_directories: [inc_cpython, inc_src, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp, flint], ) endforeach diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build new file mode 100644 index 00000000000..b3ae1e4ae0c --- /dev/null +++ b/src/sage/libs/gap/meson.build @@ -0,0 +1,30 @@ +py.install_sources( + 'all.py', + 'all_documented_functions.py', + 'assigned_names.py', + 'context_managers.py', + 'gap_functions.py', + 'gap_globals.py', + 'operations.py', + 'saved_workspace.py', + 'test.py', + 'test_long.py', + subdir: 'sage/libs/gap', +) + +extension_data = { + 'element': files('element.pyx'), + 'libgap': files('libgap.pyx'), + 'util': files('util.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/gap', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build new file mode 100644 index 00000000000..ac8e5f56b09 --- /dev/null +++ b/src/sage/libs/giac/meson.build @@ -0,0 +1,21 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/giac', +) + + +extension_data_cpp = { + # 'giac': files('giac.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/giac', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build new file mode 100644 index 00000000000..efca456cef4 --- /dev/null +++ b/src/sage/libs/glpk/meson.build @@ -0,0 +1,19 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/glpk', +) + +extension_data = { + 'error': files('error.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/glpk', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build new file mode 100644 index 00000000000..1b0d35872d9 --- /dev/null +++ b/src/sage/libs/lcalc/meson.build @@ -0,0 +1,21 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/lcalc', +) + + +extension_data_cpp = { + # 'lcalc_Lfunction': files('lcalc_Lfunction.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/lcalc', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/linbox/meson.build b/src/sage/libs/linbox/meson.build new file mode 100644 index 00000000000..6e1e46e6e0a --- /dev/null +++ b/src/sage/libs/linbox/meson.build @@ -0,0 +1,19 @@ +py.install_sources( + '__init__.py', + subdir: 'sage/libs/linbox', +) + +extension_data = { + # 'linbox_flint_interface': files('linbox_flint_interface.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/linbox', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index aebda9d93e4..e15a710a4b7 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -45,10 +45,25 @@ foreach name, pyx : extension_data_cpp ) endforeach +install_subdir('cremona', install_dir: sage_install_dir / 'libs') +install_subdir('linkages', install_dir: sage_install_dir / 'libs') +install_subdir('lrcalc', install_dir: sage_install_dir / 'libs') +install_subdir('mwrank', install_dir: sage_install_dir / 'libs') +install_subdir('pynac', install_dir: sage_install_dir / 'libs') + +subdir('arb') +subdir('coxeter3') +subdir('eclib') +subdir('flint') +subdir('gap') +subdir('giac') +subdir('glpk') subdir('gmp') subdir('gsl') -subdir('flint') -subdir('pari') +subdir('lcalc') +subdir('linbox') subdir('mpmath') subdir('ntl') +subdir('pari') +subdir('singular') subdir('symmetrica') diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 45aeb21b4eb..4950b10473e 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -20,6 +20,6 @@ foreach name, pyx : extension_data subdir: 'sage/libs/pari', install: true, include_directories: [inc_flint, inc_cpython], - dependencies: [py_dep, cypari2, cysignals, gmp], + dependencies: [py_dep, cypari2, cysignals, gmp, pari], ) endforeach diff --git a/src/sage/libs/singular/meson.build b/src/sage/libs/singular/meson.build new file mode 100644 index 00000000000..96f592c0b02 --- /dev/null +++ b/src/sage/libs/singular/meson.build @@ -0,0 +1,26 @@ +py.install_sources( + '__init__.py', + 'function_factory.py', + 'standard_options.py', + subdir: 'sage/libs/singular', +) + +extension_data = { + # 'function': files('function.pyx'), # not yet on conda + # 'groebner_strategy': files('groebner_strategy.pyx'), # not yet on conda + # 'option': files('option.pyx'), # not yet on conda + # 'polynomial': files('polynomial.pyx'), # not yet on conda + # 'ring': files('ring.pyx'), # not yet on conda + # 'singular': files('singular.pyx'), # not yet on conda +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/singular', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 8a4ef527163..c0a73029542 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -1,3 +1,16 @@ +# Cannot be found via pkg-config +meataxe = declare_dependency( + dependencies: [ + cc.find_library('meataxe', required: false), + ] +) +iml = declare_dependency( + dependencies: [ + cc.find_library('iml'), + ] +) + + py.install_sources( 'all.py', 'all__sagemath_meataxe.py', @@ -16,12 +29,6 @@ py.install_sources( subdir: 'sage/matrix', ) -# Cannot be found via pkg-config -meataxe = declare_dependency( - dependencies: [ - cc.find_library('meataxe', required: false), - ] -) extension_data = { 'action': files('action.pyx'), @@ -74,8 +81,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/matrix', install: true, - include_directories: [inc_cpython, inc_numpy, inc_flint, inc_ext, inc_rings, inc_rings_finite, inc_arb, inc_ntl], - dependencies: [py_dep, cysignals, cypari2, gmp, mpfr], + include_directories: [inc_cpython, inc_numpy, inc_flint, inc_ext, inc_rings, inc_rings_finite, inc_arb, inc_ntl, inc_iml], + dependencies: [py_dep, cysignals, cypari2, gmp, mpfr, pari, flint, iml], ) endforeach foreach name, pyx : extension_data_cpp diff --git a/src/sage/meson.build b/src/sage/meson.build index daf388cc35a..bd87f6f21ec 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -47,3 +47,8 @@ subdir('ext') subdir('interfaces') subdir('groups') subdir('matrix') +subdir('graphs') +subdir('algebras') +subdir('monoids') +subdir('symbolic') +subdir('quadratic_forms') diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index b257bd523f7..76169bd776d 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -51,6 +51,10 @@ foreach name, pyx : extension_data subdir: 'sage/modules', install: true, include_directories: [inc_cpython, inc_numpy, inc_rings_finite, inc_ext], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach + +install_subdir('fg_pid', install_dir: sage_install_dir / 'modules') +install_subdir('fp_graded', install_dir: sage_install_dir / 'modules') +subdir('with_basis') diff --git a/src/sage/modules/with_basis/meson.build b/src/sage/modules/with_basis/meson.build new file mode 100644 index 00000000000..992afc5bbba --- /dev/null +++ b/src/sage/modules/with_basis/meson.build @@ -0,0 +1,24 @@ +py.install_sources( + 'all.py', + 'cell_module.py', + 'invariant.py', + 'morphism.py', + 'representation.py', + 'subquotient.py', + subdir: 'sage/modules/with_basis', +) + +extension_data = { + 'indexed_element': files('indexed_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modules/with_basis', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals], + ) +endforeach + diff --git a/src/sage/monoids/meson.build b/src/sage/monoids/meson.build new file mode 100644 index 00000000000..6ded8192939 --- /dev/null +++ b/src/sage/monoids/meson.build @@ -0,0 +1,30 @@ +py.install_sources( + 'all.py', + 'automatic_semigroup.py', + 'free_abelian_monoid.py', + 'free_monoid.py', + 'free_monoid_element.py', + 'hecke_monoid.py', + 'indexed_free_monoid.py', + 'monoid.py', + 'string_monoid.py', + 'string_monoid_element.py', + 'string_ops.py', + 'trace_monoid.py', + subdir: 'sage/monoids', +) + +extension_data = { + 'free_abelian_monoid_element': files('free_abelian_monoid_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/monoids', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/quadratic_forms/meson.build b/src/sage/quadratic_forms/meson.build new file mode 100644 index 00000000000..c3ef0ef5e9e --- /dev/null +++ b/src/sage/quadratic_forms/meson.build @@ -0,0 +1,49 @@ +py.install_sources( + 'all.py', + 'binary_qf.py', + 'constructions.py', + 'extras.py', + 'qfsolve.py', + 'quadratic_form.py', + 'quadratic_form__automorphisms.py', + 'quadratic_form__count_local_2.py', + 'quadratic_form__equivalence_testing.py', + 'quadratic_form__genus.py', + 'quadratic_form__local_density_congruence.py', + 'quadratic_form__local_density_interfaces.py', + 'quadratic_form__local_field_invariants.py', + 'quadratic_form__local_normal_form.py', + 'quadratic_form__local_representation_conditions.py', + 'quadratic_form__mass.py', + 'quadratic_form__mass__Conway_Sloane_masses.py', + 'quadratic_form__mass__Siegel_densities.py', + 'quadratic_form__neighbors.py', + 'quadratic_form__reduction_theory.py', + 'quadratic_form__siegel_product.py', + 'quadratic_form__split_local_covering.py', + 'quadratic_form__ternary_Tornaria.py', + 'quadratic_form__theta.py', + 'quadratic_form__variable_substitutions.py', + 'random_quadraticform.py', + 'special_values.py', + 'ternary_qf.py', + subdir: 'sage/quadratic_forms', +) + +extension_data = { + 'count_local_2': files('count_local_2.pyx'), + 'quadratic_form__evaluate': files('quadratic_form__evaluate.pyx'), + 'ternary': files('ternary.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/quadratic_forms', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +install_subdir('genera', install_dir: sage_install_dir / 'quadratic_forms') diff --git a/src/sage/rings/all.py b/src/sage/rings/all.py index 2c2f6a0523e..2222d2af866 100644 --- a/src/sage/rings/all.py +++ b/src/sage/rings/all.py @@ -145,7 +145,8 @@ # c-finite sequences from sage.rings.cfinite_sequence import CFiniteSequence, CFiniteSequences -from sage.rings.bernoulli_mod_p import bernoulli_mod_p, bernoulli_mod_p_single +# How is bernmm working? where are its source files? +#from sage.rings.bernoulli_mod_p import bernoulli_mod_p, bernoulli_mod_p_single from sage.rings.monomials import monomials diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build index 5a2013e6844..86be49c5390 100644 --- a/src/sage/rings/function_field/meson.build +++ b/src/sage/rings/function_field/meson.build @@ -42,3 +42,5 @@ foreach name, pyx : extension_data dependencies: [py_dep], ) endforeach + +install_subdir('drinfeld_modules', install_dir: sage_install_dir / 'rings/function_field') diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index a2efe401fbe..595aa6a6df4 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -1,4 +1,23 @@ +mpfi = declare_dependency( + dependencies: [ + cc.find_library('mpfi'), + ] +) +gsl = dependency('gsl') +# Cannot be found via pkg-config +arb = declare_dependency( + dependencies: [ + cc.find_library('arb'), + ] +) +mpc = declare_dependency( + dependencies: [ + cc.find_library('mpc'), + ] +) + py.install_sources( + '__init__.py', 'algebraic_closure_finite_field.py', 'all.py', 'all__sagemath_categories.py', @@ -45,8 +64,6 @@ py.install_sources( extension_data = { 'abc': files('abc.pyx'), - #'bernmm': files('bernmm.pyx'), - compilation error - #'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), - compilation error 'complex_arb': files('complex_arb.pyx'), 'complex_conversion': files('complex_conversion.pyx'), 'complex_double': files('complex_double.pyx'), @@ -57,7 +74,6 @@ extension_data = { 'factorint_flint': files('factorint_flint.pyx'), 'factorint_pari': files('factorint_pari.pyx'), 'fast_arith': files('fast_arith.pyx'), - #'fraction_field_FpT': files('fraction_field_FpT.pyx'), - needs finite rings 'fraction_field_element': files('fraction_field_element.pyx'), 'integer': files('integer.pyx'), 'integer_ring': files('integer_ring.pyx'), @@ -69,7 +85,6 @@ extension_data = { 'power_series_poly': files('power_series_poly.pyx'), 'power_series_ring_element': files('power_series_ring_element.pyx'), 'puiseux_series_ring_element': files('puiseux_series_ring_element.pyx'), - 'rational': files('rational.pyx'), 'real_arb': files('real_arb.pyx'), 'real_double': files('real_double.pyx'), 'real_double_element_gsl': files('real_double_element_gsl.pyx'), @@ -87,43 +102,41 @@ extension_data = { 'tate_algebra_ideal': files('tate_algebra_ideal.pyx'), } -mpfi = declare_dependency( - dependencies: [ - cc.find_library('mpfi'), - ] -) -gsl = dependency('gsl') -# Cannot be found by pkg-config -flint = declare_dependency( - dependencies: [ - cc.find_library('flint'), - ] -) -# Cannot be found via pkg-config -arb = declare_dependency( - dependencies: [ - cc.find_library('arb'), - ] -) - foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/rings', install: true, - include_directories: [inc_cpython, inc_flint, inc_gsl, inc_arb], - dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl, flint, arb], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings], + dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl, flint, arb, mpc], ) endforeach -install_subdir('asymptotic', install_dir: sage_install_dir / 'rings') -install_subdir('invariants', install_dir: sage_install_dir / 'rings') -install_subdir('valuation', install_dir: sage_install_dir / 'rings') +extension_data_cpp = { + 'bernmm': files('bernmm.pyx'), + 'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), + 'fraction_field_FpT': files('fraction_field_FpT.pyx'), + 'rational': files('rational.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/rings', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings, inc_ntl, inc_rings_finite], + dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl, flint, arb, mpc, ntl], + ) +endforeach +install_subdir('asymptotic', install_dir: sage_install_dir / 'rings') subdir('convert') subdir('finite_rings') subdir('function_field') +install_subdir('invariants', install_dir: sage_install_dir / 'rings') subdir('number_field') subdir('padics') subdir('polynomial') subdir('semirings') +install_subdir('valuation', install_dir: sage_install_dir / 'rings') diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index 71ca8a1e91f..afd0f50a765 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -70,6 +70,6 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_ntl, inc_ext], - dependencies: [py_dep, cypari2, cysignals, gmp], + dependencies: [py_dep, cypari2, cysignals, gmp, ntl], ) endforeach diff --git a/src/sage/rings/padics/pow_computer_ext.pyx b/src/sage/rings/padics/pow_computer_ext.pyx index 742464a492d..1460da23cd4 100644 --- a/src/sage/rings/padics/pow_computer_ext.pyx +++ b/src/sage/rings/padics/pow_computer_ext.pyx @@ -68,7 +68,7 @@ from sage.libs.ntl.ntl_ZZ cimport ntl_ZZ from sage.libs.ntl.ntl_ZZ_pX cimport ntl_ZZ_pX, ntl_ZZ_pX_Modulus from sage.rings.integer cimport Integer -cdef extern from "sage/ext/ccobject.h": +cdef extern from "ccobject.h": ZZ_c* Allocate_ZZ_array "Allocate_array"(size_t n) void Delete_ZZ_array "Delete_array"(ZZ_c* v) ZZ_pX_c* Allocate_ZZ_pX_array "Allocate_array"(size_t n) diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index 72dc152ad14..a42fc33d338 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -36,7 +36,6 @@ py.install_sources( 'toy_variety.py', subdir: 'sage/rings/polynomial', ) -install_subdir('padics', install_dir: sage_install_dir / 'polynomial') extension_data_cpp = { 'evaluation_ntl': files('evaluation_ntl.pyx'), @@ -82,7 +81,7 @@ foreach name, pyx : extension_data subdir: 'sage/rings/polynomial', install: true, include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings, inc_numpy, inc_ext, inc_arb], - dependencies: [py_dep, cysignals, cypari2, gmp, mpfi, arb], + dependencies: [py_dep, cysignals, cypari2, gmp, mpfi, arb, flint], ) endforeach @@ -97,5 +96,6 @@ foreach name, pyx : extension_data_cpp ) endforeach +install_subdir('padics', install_dir: sage_install_dir / 'rings/polynomial') subdir('pbori') subdir('weil') diff --git a/src/sage/symbolic/__init__.py b/src/sage/symbolic/__init__.py new file mode 100644 index 00000000000..27875dc3de5 --- /dev/null +++ b/src/sage/symbolic/__init__.py @@ -0,0 +1 @@ +# here so that cython creates the correct module name diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build new file mode 100644 index 00000000000..c60742ad285 --- /dev/null +++ b/src/sage/symbolic/meson.build @@ -0,0 +1,69 @@ +# cannot be found via pkg-config +singular = declare_dependency( + dependencies: [ + cc.find_library('singular', required: false), + ], +) +ginac = declare_dependency( + dependencies: [ + cc.find_library('ginac', required: false), + ], +) + +py.install_sources( + 'all.py', + 'assumptions.py', + 'benchmark.py', + 'callable.py', + 'complexity_measures.py', + 'constants.py', + 'expression_conversion_algebraic.py', + 'expression_conversion_sympy.py', + 'expression_conversions.py', + 'function_factory.py', + 'maxima_wrapper.py', + 'operators.py', + 'random_tests.py', + 'relation.py', + 'subring.py', + 'symbols.py', + 'symengine.py', + 'tests.py', + 'units.py', + subdir: 'sage/symbolic', +) + +extension_data = { + 'function': files('function.pyx'), + 'ring': files('ring.pyx'), +} + +inc_ginac = include_directories('ginac') + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/symbolic', + install: true, + include_directories: [inc_cpython, inc_rings, inc_ginac], + dependencies: [py_dep, cysignals, flint, gmp, singular], + ) +endforeach + +extension_data_cpp = { + 'expression': files('expression.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/symbolic', + install: true, + cython_args: ['-I', inc_numpy], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings, inc_ext, inc_ginac], + dependencies: [py_dep, cysignals, flint, gmp, singular, cypari2, ginac], + ) +endforeach + +install_subdir('integration', install_dir: sage_install_dir / 'symbolic') From c279072ad4b702b4b07ea75ebb2225700abee1e9 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 2 Nov 2023 16:03:40 +0000 Subject: [PATCH 032/229] Fix matrix --- generate-meson.py | 50 ++++++++++++++--- src/meson.build | 104 ++++++++++++++++++++++++++++++++++++ src/sage/matrix/meson.build | 41 +++++++------- 3 files changed, 168 insertions(+), 27 deletions(-) diff --git a/generate-meson.py b/generate-meson.py index c0648ad3b65..9582903fc52 100644 --- a/generate-meson.py +++ b/generate-meson.py @@ -37,23 +37,40 @@ def get_metadata(path: Path): with open(path, 'r') as file: metadata = SimpleNamespace() metadata.path = path - metadata.is_cpp = any(line.startswith('# distutils: language = c++') for line in file) - metadata.libraries = [] for line in file: if line.startswith('# distutils: libraries ='): libraries = line.split('libraries =')[1].strip().split() - libraries = [library.replace('NTL_LIBRARIES', 'ntl').replace('SINGULAR_LIBRARIES', 'singular') for library in libraries] + libraries = [ + library + .replace('ARB_LIBRARY', 'arb') + .replace('NTL_LIBRARIES', 'ntl') + .replace('SINGULAR_LIBRARIES', 'singular') + .replace('LINBOX_LIBRARIES', 'linbox') + .replace('FFLASFFPACK_LIBRARIES', 'fflas') + .replace('GSL_LIBRARIES', 'gsl') + .replace('M4RI_LIBRARIES', 'm4ri') + .replace('GDLIB_LIBRARIES', 'gd') + .replace('LIBPNG_LIBRARIES', 'png') + .replace('CBLAS_LIBRARIES', 'cblas') + .replace('ZLIB_LIBRARIES', 'zlib') + for library in libraries] metadata.libraries += libraries metadata.inc_dirs = [] c_file = path.with_suffix('.c') + cpp_file = path.with_suffix('.cpp') + if cpp_file.exists(): + metadata.is_cpp = True + c_file = cpp_file + else: + metadata.is_cpp = False if c_file.exists(): metadata.not_yet_on_conda = False with open(c_file, 'r') as c_file: contents = c_file.read() known_inc_dirs = { - 'sage/cpython': 'inc_cpython', + 'sage/cpython/': 'inc_cpython', 'sage/rings': 'inc_rings', 'sage/rings/finite_rings': 'inc_rings_finite', 'sage/libs/flint': 'inc_flint', @@ -61,11 +78,28 @@ def get_metadata(path: Path): 'sage/libs/ntl': 'inc_ntl', 'sage/libs/arb': 'inc_arb', 'sage/data_structures': 'inc_data_structures', - 'sage/ext': 'inc_ext', + 'sage/ext/': 'inc_ext', + 'numpy/core/include/': 'inc_numpy', } for known_inc_dir in known_inc_dirs: if known_inc_dir in contents: metadata.inc_dirs.append(known_inc_dirs[known_inc_dir]) + known_libs = { + 'cypari2/': 'cypari2', + 'cysignals/': 'cysignals', + '/gmp.h': 'gmp', + '/iml.h': 'iml', + '/m4ri/': 'm4ri', + '/pari/': 'pari', + '/flint/': 'flint', + '/fflas-ffpack/': 'fflas', + '/givaro/': 'givaro', + '/gmp++/': 'gmpxx', + '/linbox/': 'linbox', + } + for known_lib in known_libs: + if known_lib in contents: + metadata.libraries.append(known_libs[known_lib]) else: metadata.not_yet_on_conda = metadata.is_cpp is False @@ -74,7 +108,7 @@ def get_metadata(path: Path): cython_files = [get_metadata(file) for file in cython_files] cython_c_files = [file for file in cython_files if not file.is_cpp] cython_cpp_files = [file for file in cython_files if file.is_cpp] - all_libraries = sorted(set(library for file in cython_files for library in file.libraries)) + all_libraries = sorted(set(library for file in cython_files for library in file.libraries) | {'gmp'}) all_inc_dirs = sorted(set(inc_dir for file in cython_files for inc_dir in file.inc_dirs)) subdirs = sorted(list(folder.glob('*/'))) @@ -106,7 +140,7 @@ def get_metadata(path: Path): meson_build.write(f" subdir: '{folder_rel_to_src}',\n") meson_build.write(' install: true,\n') meson_build.write(f" include_directories: [{', '.join(all_inc_dirs)}],\n") - meson_build.write(f" dependencies: [py_dep, cysignals, gmp{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") + meson_build.write(f" dependencies: [py_dep{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") meson_build.write(' )\n') meson_build.write('endforeach\n') @@ -127,7 +161,7 @@ def get_metadata(path: Path): meson_build.write(' install: true,\n') meson_build.write(' override_options : [\'cython_language=cpp\'],\n') meson_build.write(f" include_directories: [{', '.join(all_inc_dirs)}],\n") - meson_build.write(f" dependencies: [py_dep, cysignals, gmp{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") + meson_build.write(f" dependencies: [py_dep{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") meson_build.write(' )\n') meson_build.write('endforeach\n') diff --git a/src/meson.build b/src/meson.build index 63faf358971..6deb1e671ed 100644 --- a/src/meson.build +++ b/src/meson.build @@ -75,6 +75,110 @@ flint = declare_dependency( ] ) +cblas = dependency('cblas') +gsl = dependency('gsl', fallback: ['gsl', 'gsl_dep'], version : '>=2.5', required: true) +gd = declare_dependency( + dependencies: [ + cc.find_library('gd'), + ] +) +iml = declare_dependency( + dependencies: [ + cc.find_library('iml'), + ] +) +m = declare_dependency( + dependencies: [ + cc.find_library('m'), + ] +) +m4ri = declare_dependency( + dependencies: [ + cc.find_library('m4ri'), + ] +) +m4rie = declare_dependency( + dependencies: [ + cc.find_library('m4rie'), + ] +) +mtx = declare_dependency( + dependencies: [ + cc.find_library('mtx', required: false), + ] +) +png = declare_dependency( + dependencies: [ + cc.find_library('png'), + ] +) +zlib = declare_dependency( + dependencies: [ + cc.find_library('z'), + ] +) +intl = declare_dependency( + dependencies: [ + cc.find_library('intl', required: false), + ] +) +curl = declare_dependency( + dependencies: [ + cc.find_library('curl'), + ] +) +ec = declare_dependency( + dependencies: [ + cc.find_library('ec'), + ] +) +ecm = declare_dependency( + dependencies: [ + cc.find_library('ecm'), + ] +) +glpk = declare_dependency( + dependencies: [ + cc.find_library('glpk'), + ] +) +ppl = declare_dependency( + dependencies: [ + cc.find_library('ppl'), + ] +) +gmpxx = declare_dependency( + dependencies: [ + cc.find_library('gmpxx'), + ] +) +readline = declare_dependency( + dependencies: [ + cc.find_library('readline'), + ] +) +lfunction = declare_dependency( + dependencies: [ + cc.find_library('Lfunction', required: false), + ] +) +fflas = declare_dependency( + dependencies: [ + cc.find_library('fflas'), + ] +) +givaro = declare_dependency( + dependencies: [ + cc.find_library('givaro'), + ] +) +linbox = declare_dependency( + dependencies: [ + cc.find_library('linbox'), + ] +) + + # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path inc_cython = run_command(py, diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index c0a73029542..f2a3bab7bda 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -12,6 +12,7 @@ iml = declare_dependency( py.install_sources( + '__init__.py', 'all.py', 'all__sagemath_meataxe.py', 'benchmark.py', @@ -29,7 +30,6 @@ py.install_sources( subdir: 'sage/matrix', ) - extension_data = { 'action': files('action.pyx'), 'args': files('args.pyx'), @@ -48,11 +48,7 @@ extension_data = { 'matrix_gap': files('matrix_gap.pyx'), 'matrix_generic_dense': files('matrix_generic_dense.pyx'), 'matrix_generic_sparse': files('matrix_generic_sparse.pyx'), - 'matrix_gf2e_dense': files('matrix_gf2e_dense.pyx'), - #'matrix_gfpn_dense': files('matrix_gfpn_dense.pyx'), - requires meataxe - 'matrix_integer_dense': files('matrix_integer_dense.pyx'), - 'matrix_mod2_dense': files('matrix_mod2_dense.pyx'), - #'matrix_mpolynomial_dense': files('matrix_mpolynomial_dense.pyx'), - compilation error + # 'matrix_gfpn_dense': files('matrix_gfpn_dense.pyx'), # not yet on conda 'matrix_numpy_dense': files('matrix_numpy_dense.pyx'), 'matrix_numpy_integer_dense': files('matrix_numpy_integer_dense.pyx'), 'matrix_polynomial_dense': files('matrix_polynomial_dense.pyx'), @@ -67,31 +63,38 @@ extension_data = { 'misc_mpfr': files('misc_mpfr.pyx'), 'strassen': files('strassen.pyx'), } -extension_data_cpp = { - 'matrix_cyclo_dense': files('matrix_cyclo_dense.pyx'), - 'matrix_modn_dense_double': files('matrix_modn_dense_double.pyx'), - 'matrix_modn_dense_float': files('matrix_modn_dense_float.pyx'), - 'matrix_integer_sparse': files('matrix_integer_sparse.pyx'), - 'matrix_modn_sparse': files('matrix_modn_sparse.pyx'), - 'matrix_rational_dense': files('matrix_rational_dense.pyx'), -} foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/matrix', install: true, - include_directories: [inc_cpython, inc_numpy, inc_flint, inc_ext, inc_rings, inc_rings_finite, inc_arb, inc_ntl, inc_iml], - dependencies: [py_dep, cysignals, cypari2, gmp, mpfr, pari, flint, iml], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mtx, ntl, pari, png, zlib], ) endforeach + +extension_data_cpp = { + 'matrix_cyclo_dense': files('matrix_cyclo_dense.pyx'), + 'matrix_gf2e_dense': files('matrix_gf2e_dense.pyx'), + 'matrix_integer_dense': files('matrix_integer_dense.pyx'), + 'matrix_integer_sparse': files('matrix_integer_sparse.pyx'), + 'matrix_mod2_dense': files('matrix_mod2_dense.pyx'), + 'matrix_modn_dense_double': files('matrix_modn_dense_double.pyx'), + 'matrix_modn_dense_float': files('matrix_modn_dense_float.pyx'), + 'matrix_modn_sparse': files('matrix_modn_sparse.pyx'), + 'matrix_mpolynomial_dense': files('matrix_mpolynomial_dense.pyx'), + 'matrix_rational_dense': files('matrix_rational_dense.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/matrix', install: true, - override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_numpy, inc_flint, inc_ext, inc_rings_finite, inc_rings, inc_arb, inc_ntl], - dependencies: [py_dep, cysignals, cypari2, gmp, mpfr], + override_options : ['cython_language=cpp'], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mtx, ntl, pari, png, zlib], ) endforeach + From 8accfbda36956937d0b13b2ff03e519ab4c8a8e2 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 2 Nov 2023 18:22:48 +0000 Subject: [PATCH 033/229] Last set of meson files --- generate-meson.py | 16 +++++ meson.build | 3 - src/meson.build | 40 ++++++++++- .../finite_dimensional_algebras/meson.build | 2 +- src/sage/algebras/fusion_rings/meson.build | 12 ++-- src/sage/algebras/letterplace/meson.build | 15 +++-- src/sage/algebras/lie_algebras/meson.build | 2 +- src/sage/algebras/meson.build | 10 +-- src/sage/algebras/quatalg/meson.build | 7 +- src/sage/arith/meson.build | 3 +- src/sage/calculus/meson.build | 33 +++++++++ src/sage/calculus/transforms/meson.build | 21 ++++++ src/sage/categories/examples/meson.build | 50 ++++++++++++++ src/sage/categories/meson.build | 8 ++- src/sage/coding/codecan/meson.build | 20 ++++++ src/sage/coding/meson.build | 57 ++++++++++++++++ src/sage/combinat/crystals/meson.build | 2 +- src/sage/combinat/designs/meson.build | 2 +- src/sage/combinat/integer_lists/meson.build | 2 +- src/sage/combinat/matrices/meson.build | 4 +- src/sage/combinat/posets/meson.build | 2 +- .../rigged_configurations/meson.build | 2 +- src/sage/combinat/root_system/meson.build | 2 +- src/sage/combinat/words/meson.build | 2 +- src/sage/cpython/meson.build | 5 +- src/sage/crypto/meson.build | 35 ++++++++++ src/sage/data_structures/meson.build | 10 +-- src/sage/ext/interpreters/meson.build | 25 ++----- src/sage/ext/meson.build | 4 +- src/sage/functions/meson.build | 38 +++++++++++ src/sage/games/meson.build | 22 ++++++ src/sage/geometry/meson.build | 46 +++++++++++++ src/sage/geometry/triangulation/meson.build | 22 ++++++ src/sage/graphs/base/meson.build | 10 +-- src/sage/graphs/generators/meson.build | 2 +- .../graphs/graph_decompositions/meson.build | 33 ++++++--- src/sage/graphs/meson.build | 54 ++++++++++----- src/sage/groups/matrix_gps/meson.build | 42 ++++++++++++ src/sage/groups/meson.build | 16 +++-- src/sage/groups/perm_gps/meson.build | 28 ++++++++ .../groups/perm_gps/partn_ref/meson.build | 28 ++++++++ .../groups/perm_gps/partn_ref2/meson.build | 19 ++++++ .../semimonomial_transformations/meson.build | 20 ++++++ src/sage/interacts/meson.build | 25 +++++++ src/sage/interfaces/meson.build | 3 +- src/sage/lfunctions/meson.build | 23 +++++++ src/sage/libs/arb/meson.build | 2 +- src/sage/libs/eclib/meson.build | 17 ++--- src/sage/libs/flint/meson.build | 5 +- src/sage/libs/gap/meson.build | 2 +- src/sage/libs/giac/meson.build | 13 ++-- src/sage/libs/glpk/meson.build | 2 +- src/sage/libs/gmp/meson.build | 1 + src/sage/libs/gsl/meson.build | 4 +- src/sage/libs/lcalc/meson.build | 7 +- src/sage/libs/linbox/meson.build | 11 +-- src/sage/libs/meson.build | 35 +++++----- src/sage/libs/mpmath/meson.build | 5 +- src/sage/libs/ntl/meson.build | 7 +- src/sage/libs/pari/meson.build | 5 +- src/sage/libs/singular/meson.build | 21 +++--- src/sage/libs/symmetrica/meson.build | 18 ++--- src/sage/matrix/meson.build | 4 +- src/sage/matroids/meson.build | 39 +++++++++++ src/sage/meson.build | 49 +++++++++++--- src/sage/misc/meson.build | 3 +- src/sage/modular/arithgroup/all.py | 4 +- src/sage/modular/arithgroup/meson.build | 44 ++++++++++++ src/sage/modular/meson.build | 43 ++++++++++++ src/sage/modular/modform/meson.build | 46 +++++++++++++ src/sage/modular/modsym/meson.build | 37 ++++++++++ src/sage/modular/pollack_stevens/meson.build | 26 +++++++ src/sage/modules/meson.build | 20 +++++- src/sage/modules/with_basis/meson.build | 2 +- src/sage/numerical/backends/meson.build | 54 +++++++++++++++ src/sage/numerical/meson.build | 30 +++++++++ src/sage/plot/meson.build | 49 ++++++++++++++ src/sage/plot/plot3d/meson.build | 36 ++++++++++ src/sage/probability/meson.build | 20 ++++++ src/sage/quadratic_forms/meson.build | 2 +- src/sage/quivers/meson.build | 25 +++++++ src/sage/rings/convert/meson.build | 3 +- src/sage/rings/finite_rings/meson.build | 25 ++++--- src/sage/rings/function_field/meson.build | 4 +- src/sage/rings/meson.build | 24 ++----- src/sage/rings/number_field/meson.build | 20 +++--- src/sage/rings/padics/meson.build | 37 +++++----- src/sage/rings/polynomial/meson.build | 35 +++++----- src/sage/rings/polynomial/pbori/meson.build | 24 ++++--- src/sage/rings/polynomial/weil/meson.build | 5 +- src/sage/rings/semirings/meson.build | 5 +- src/sage/schemes/all.py | 9 ++- src/sage/schemes/elliptic_curves/meson.build | 67 +++++++++++++++++++ .../schemes/hyperelliptic_curves/meson.build | 36 ++++++++++ src/sage/schemes/meson.build | 20 ++++++ src/sage/schemes/toric/meson.build | 33 +++++++++ src/sage/sets/meson.build | 7 +- src/sage/stats/distributions/meson.build | 21 ++++++ src/sage/stats/hmm/meson.build | 22 ++++++ src/sage/stats/meson.build | 24 +++++++ src/sage/structure/meson.build | 7 +- src/sage/symbolic/meson.build | 14 ++-- src/sage/tests/meson.build | 21 +++--- 103 files changed, 1669 insertions(+), 309 deletions(-) create mode 100644 src/sage/calculus/meson.build create mode 100644 src/sage/calculus/transforms/meson.build create mode 100644 src/sage/categories/examples/meson.build create mode 100644 src/sage/coding/codecan/meson.build create mode 100644 src/sage/coding/meson.build create mode 100644 src/sage/crypto/meson.build create mode 100644 src/sage/functions/meson.build create mode 100644 src/sage/games/meson.build create mode 100644 src/sage/geometry/meson.build create mode 100644 src/sage/geometry/triangulation/meson.build create mode 100644 src/sage/groups/matrix_gps/meson.build create mode 100644 src/sage/groups/perm_gps/meson.build create mode 100644 src/sage/groups/perm_gps/partn_ref/meson.build create mode 100644 src/sage/groups/perm_gps/partn_ref2/meson.build create mode 100644 src/sage/groups/semimonomial_transformations/meson.build create mode 100644 src/sage/interacts/meson.build create mode 100644 src/sage/lfunctions/meson.build create mode 100644 src/sage/matroids/meson.build create mode 100644 src/sage/modular/arithgroup/meson.build create mode 100644 src/sage/modular/meson.build create mode 100644 src/sage/modular/modform/meson.build create mode 100644 src/sage/modular/modsym/meson.build create mode 100644 src/sage/modular/pollack_stevens/meson.build create mode 100644 src/sage/numerical/backends/meson.build create mode 100644 src/sage/numerical/meson.build create mode 100644 src/sage/plot/meson.build create mode 100644 src/sage/plot/plot3d/meson.build create mode 100644 src/sage/probability/meson.build create mode 100644 src/sage/quivers/meson.build create mode 100644 src/sage/schemes/elliptic_curves/meson.build create mode 100644 src/sage/schemes/hyperelliptic_curves/meson.build create mode 100644 src/sage/schemes/meson.build create mode 100644 src/sage/schemes/toric/meson.build create mode 100644 src/sage/stats/distributions/meson.build create mode 100644 src/sage/stats/hmm/meson.build create mode 100644 src/sage/stats/meson.build diff --git a/generate-meson.py b/generate-meson.py index 9582903fc52..9a4bed7a73c 100644 --- a/generate-meson.py +++ b/generate-meson.py @@ -54,7 +54,12 @@ def get_metadata(path: Path): .replace('LIBPNG_LIBRARIES', 'png') .replace('CBLAS_LIBRARIES', 'cblas') .replace('ZLIB_LIBRARIES', 'zlib') + .replace('Lfunction', 'lfunction') for library in libraries] + try: + libraries.remove('CYGWIN_SQLITE3_LIBS') + except ValueError: + pass metadata.libraries += libraries metadata.inc_dirs = [] @@ -80,6 +85,10 @@ def get_metadata(path: Path): 'sage/data_structures': 'inc_data_structures', 'sage/ext/': 'inc_ext', 'numpy/core/include/': 'inc_numpy', + 'sage/symbolic/ginac/': 'inc_ginac', + 'sage/symbolic/pynac_wrap.h': 'inc_pynac', + 'sage/groups/perm_gps/partn_ref2/': 'inc_partn_ref2', + 'sage/ext/interpreters/': 'inc_interpreters', } for known_inc_dir in known_inc_dirs: if known_inc_dir in contents: @@ -96,6 +105,13 @@ def get_metadata(path: Path): '/givaro/': 'givaro', '/gmp++/': 'gmpxx', '/linbox/': 'linbox', + '/gsl/': 'gsl', + 'mpfr.h': 'mpfr', + 'sage/symbolic/ginac/': 'ginac', + 'arb.h': 'arb', + 'mpfi.h': 'mpfi', + 'mpc.h': 'mpc', + 'gmpy2/': 'gmpy2', } for known_lib in known_libs: if known_lib in contents: diff --git a/meson.build b/meson.build index d3b48741eaf..b1c16df6459 100644 --- a/meson.build +++ b/meson.build @@ -56,9 +56,6 @@ configure_file(input : 'pkgs/sage-conf_conda/_sage_conf/_conf.py.in', output : '_conf.py', configuration : conf_data) -#arb = dependency('arb', required: true) -#cpari = dependency('cpari', required: true) - test( 'import', py, diff --git a/src/meson.build b/src/meson.build index 6deb1e671ed..4d880e5fb45 100644 --- a/src/meson.build +++ b/src/meson.build @@ -177,7 +177,43 @@ linbox = declare_dependency( cc.find_library('linbox'), ] ) - +braiding = declare_dependency( + dependencies: [ + cc.find_library('braiding'), + ] +) +gc = declare_dependency( + dependencies: [ + cc.find_library('gc'), + ] +) +homfly = declare_dependency( + dependencies: [ + cc.find_library('homfly'), + ] +) +mpc = declare_dependency( + dependencies: [ + cc.find_library('mpc'), + ] +) +# Cannot be found via pkg-config +arb = declare_dependency( + dependencies: [ + cc.find_library('arb'), + ] +) +mpfi = declare_dependency( + dependencies: [ + cc.find_library('mpfi'), + ] +) +gsl = dependency('gsl') +mpc = declare_dependency( + dependencies: [ + cc.find_library('mpc'), + ] +) # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path @@ -222,6 +258,8 @@ inc_arb = include_directories('sage/libs/arb') inc_iml = include_directories('sage/libs') inc_data_structures = include_directories('sage/data_structures') inc_ext = include_directories('sage/ext') +inc_interpreters = include_directories('sage/ext/interpreters') +inc_partn_ref2 = include_directories('sage/groups/perm_gps/partn_ref2') inc_src = include_directories('.') # Submodules diff --git a/src/sage/algebras/finite_dimensional_algebras/meson.build b/src/sage/algebras/finite_dimensional_algebras/meson.build index 3aac590596f..82905b4f663 100644 --- a/src/sage/algebras/finite_dimensional_algebras/meson.build +++ b/src/sage/algebras/finite_dimensional_algebras/meson.build @@ -16,7 +16,7 @@ foreach name, pyx : extension_data subdir: 'sage/algebras/finite_dimensional_algebras', install: true, include_directories: [inc_cpython], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index df9ab85023e..150a5f24699 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -15,23 +15,25 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/algebras/fusion_rings', install: true, - include_directories: [inc_numpy, inc_ntl], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach extension_data_cpp = { 'fast_parallel_fmats_methods': files('fast_parallel_fmats_methods.pyx'), - 'shm_managers': files('shm_managers.pyx'), 'poly_tup_engine': files('poly_tup_engine.pyx'), + 'shm_managers': files('shm_managers.pyx'), } + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/algebras/fusion_rings', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_numpy, inc_ntl], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach + diff --git a/src/sage/algebras/letterplace/meson.build b/src/sage/algebras/letterplace/meson.build index 7ad5d465c6d..bc3bd24022e 100644 --- a/src/sage/algebras/letterplace/meson.build +++ b/src/sage/algebras/letterplace/meson.build @@ -3,19 +3,20 @@ py.install_sources( subdir: 'sage/algebras/letterplace', ) -extension_data = { - # 'free_algebra_element_letterplace': files('free_algebra_element_letterplace.pyx'), # not yet on conda - # 'free_algebra_letterplace': files('free_algebra_letterplace.pyx'), # not yet on conda - # 'letterplace_ideal': files('letterplace_ideal.pyx'), # not yet on conda +extension_data_cpp = { + 'free_algebra_element_letterplace': files('free_algebra_element_letterplace.pyx'), + 'free_algebra_letterplace': files('free_algebra_letterplace.pyx'), + 'letterplace_ideal': files('letterplace_ideal.pyx'), } -foreach name, pyx : extension_data +foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/algebras/letterplace', install: true, - include_directories: [], - dependencies: [py_dep, cysignals], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/algebras/lie_algebras/meson.build b/src/sage/algebras/lie_algebras/meson.build index 74e9975ebd7..72a44793891 100644 --- a/src/sage/algebras/lie_algebras/meson.build +++ b/src/sage/algebras/lie_algebras/meson.build @@ -32,7 +32,7 @@ foreach name, pyx : extension_data subdir: 'sage/algebras/lie_algebras', install: true, include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/algebras/meson.build b/src/sage/algebras/meson.build index d7878ee1373..be482e9d38f 100644 --- a/src/sage/algebras/meson.build +++ b/src/sage/algebras/meson.build @@ -52,16 +52,16 @@ foreach name, pyx : extension_data subdir: 'sage/algebras', install: true, include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach subdir('finite_dimensional_algebras') subdir('fusion_rings') -subdir('hecke_algebras') +install_subdir('hecke_algebras', install_dir: sage_install_dir / 'algebras') subdir('letterplace') subdir('lie_algebras') -subdir('lie_conformal_algebras') -subdir('quantum_groups') +install_subdir('lie_conformal_algebras', install_dir: sage_install_dir / 'algebras') +install_subdir('quantum_groups', install_dir: sage_install_dir / 'algebras') subdir('quatalg') -subdir('steenrod') +install_subdir('steenrod', install_dir: sage_install_dir / 'algebras') diff --git a/src/sage/algebras/quatalg/meson.build b/src/sage/algebras/quatalg/meson.build index 8042e99b64c..36dc9f57077 100644 --- a/src/sage/algebras/quatalg/meson.build +++ b/src/sage/algebras/quatalg/meson.build @@ -1,12 +1,9 @@ -m = dependency('m', required: false) - py.install_sources( 'all.py', 'quaternion_algebra.py', subdir: 'sage/algebras/quatalg', ) - extension_data_cpp = { 'quaternion_algebra_cython': files('quaternion_algebra_cython.pyx'), 'quaternion_algebra_element': files('quaternion_algebra_element.pyx'), @@ -18,8 +15,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/algebras/quatalg', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_flint, inc_ntl, inc_ext], - dependencies: [py_dep, cysignals, gmp, m, ntl, flint], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, flint, gmp, m, ntl], ) endforeach diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build index c9f26a1d1c5..1387e5246f6 100644 --- a/src/sage/arith/meson.build +++ b/src/sage/arith/meson.build @@ -19,7 +19,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/arith', install: true, - include_directories: [inc_cpython, inc_rings, inc_ext], + include_directories: [inc_cpython, inc_ext, inc_rings], dependencies: [py_dep, cysignals, gmp], ) endforeach + diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build new file mode 100644 index 00000000000..39b6945d9f7 --- /dev/null +++ b/src/sage/calculus/meson.build @@ -0,0 +1,33 @@ +py.install_sources( + 'all.py', + 'calculus.py', + 'desolvers.py', + 'functional.py', + 'functions.py', + 'predefined.py', + 'test_sympy.py', + 'tests.py', + 'wester.py', + subdir: 'sage/calculus', +) + +extension_data = { + 'integration': files('integration.pyx'), + 'interpolation': files('interpolation.pyx'), + 'interpolators': files('interpolators.pyx'), + 'ode': files('ode.pyx'), + 'riemann': files('riemann.pyx'), + 'var': files('var.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/calculus', + install: true, + include_directories: [inc_ext, inc_numpy], + dependencies: [py_dep, cysignals, gmp, gsl], + ) +endforeach + +subdir('transforms') diff --git a/src/sage/calculus/transforms/meson.build b/src/sage/calculus/transforms/meson.build new file mode 100644 index 00000000000..7da588ca3b5 --- /dev/null +++ b/src/sage/calculus/transforms/meson.build @@ -0,0 +1,21 @@ +py.install_sources( + 'all.py', + 'dft.py', + subdir: 'sage/calculus/transforms', +) + +extension_data = { + 'dwt': files('dwt.pyx'), + 'fft': files('fft.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/calculus/transforms', + install: true, + include_directories: [inc_gsl], + dependencies: [py_dep, cysignals, gmp, gsl], + ) +endforeach + diff --git a/src/sage/categories/examples/meson.build b/src/sage/categories/examples/meson.build new file mode 100644 index 00000000000..b87b550709c --- /dev/null +++ b/src/sage/categories/examples/meson.build @@ -0,0 +1,50 @@ +py.install_sources( + 'algebras_with_basis.py', + 'all.py', + 'commutative_additive_monoids.py', + 'commutative_additive_semigroups.py', + 'coxeter_groups.py', + 'crystals.py', + 'cw_complexes.py', + 'facade_sets.py', + 'filtered_algebras_with_basis.py', + 'filtered_modules_with_basis.py', + 'finite_coxeter_groups.py', + 'finite_dimensional_algebras_with_basis.py', + 'finite_dimensional_lie_algebras_with_basis.py', + 'finite_enumerated_sets.py', + 'finite_monoids.py', + 'finite_semigroups.py', + 'finite_weyl_groups.py', + 'graded_connected_hopf_algebras_with_basis.py', + 'graded_modules_with_basis.py', + 'graphs.py', + 'hopf_algebras_with_basis.py', + 'infinite_enumerated_sets.py', + 'lie_algebras.py', + 'lie_algebras_with_basis.py', + 'magmas.py', + 'manifolds.py', + 'monoids.py', + 'posets.py', + 'semigroups.py', + 'sets_cat.py', + 'sets_with_grading.py', + 'with_realizations.py', + subdir: 'sage/categories/examples', +) + +extension_data = { + 'semigroups_cython': files('semigroups_cython.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/categories/examples', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index 0639d5bd1ff..beb4a57fe7c 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -1,4 +1,5 @@ py.install_sources( + '__init__.py', 'additive_groups.py', 'additive_magmas.py', 'additive_monoids.py', @@ -207,8 +208,9 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/categories', install: true, - #cython_args: ['-I', inc_numpy, '-I', '/workspaces/sage/builddir'], - include_directories: [inc_cpython, inc_numpy], - dependencies: [py_dep], + include_directories: [inc_cpython, inc_ext], + dependencies: [py_dep, gmp], ) endforeach + +subdir('examples') diff --git a/src/sage/coding/codecan/meson.build b/src/sage/coding/codecan/meson.build new file mode 100644 index 00000000000..cbc24c21194 --- /dev/null +++ b/src/sage/coding/codecan/meson.build @@ -0,0 +1,20 @@ +py.install_sources( + 'all.py', + subdir: 'sage/coding/codecan', +) + +extension_data = { + 'autgroup_can_label': files('autgroup_can_label.pyx'), + 'codecan': files('codecan.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/coding/codecan', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_partn_ref2, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/coding/meson.build b/src/sage/coding/meson.build new file mode 100644 index 00000000000..52e933cbc50 --- /dev/null +++ b/src/sage/coding/meson.build @@ -0,0 +1,57 @@ +py.install_sources( + 'abstract_code.py', + 'ag_code.py', + 'all.py', + 'bch_code.py', + 'bounds_catalog.py', + 'channel.py', + 'channels_catalog.py', + 'code_bounds.py', + 'code_constructions.py', + 'codes_catalog.py', + 'cyclic_code.py', + 'databases.py', + 'decoder.py', + 'decoders_catalog.py', + 'delsarte_bounds.py', + 'encoder.py', + 'encoders_catalog.py', + 'extended_code.py', + 'gabidulin_code.py', + 'golay_code.py', + 'goppa_code.py', + 'grs_code.py', + 'guava.py', + 'hamming_code.py', + 'information_set_decoder.py', + 'linear_code.py', + 'linear_code_no_metric.py', + 'linear_rank_metric.py', + 'parity_check_code.py', + 'punctured_code.py', + 'reed_muller_code.py', + 'self_dual_codes.py', + 'subfield_subcode.py', + 'two_weight_db.py', + subdir: 'sage/coding', +) + +extension_data = { + 'ag_code_decoders': files('ag_code_decoders.pyx'), + 'binary_code': files('binary_code.pyx'), + 'kasami_codes': files('kasami_codes.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/coding', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +subdir('codecan') +install_subdir('guruswami_sudan', install_dir: sage_install_dir / 'coding') +install_subdir('source_coding', install_dir: sage_install_dir / 'coding') diff --git a/src/sage/combinat/crystals/meson.build b/src/sage/combinat/crystals/meson.build index ffe467683a7..92fad748c28 100644 --- a/src/sage/combinat/crystals/meson.build +++ b/src/sage/combinat/crystals/meson.build @@ -47,7 +47,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/crystals', install: true, include_directories: [inc_cpython], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build index 6dd274ca93b..d9d393de6c8 100644 --- a/src/sage/combinat/designs/meson.build +++ b/src/sage/combinat/designs/meson.build @@ -34,7 +34,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/designs', install: true, include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/combinat/integer_lists/meson.build b/src/sage/combinat/integer_lists/meson.build index c4968073c27..dd60b6049d0 100644 --- a/src/sage/combinat/integer_lists/meson.build +++ b/src/sage/combinat/integer_lists/meson.build @@ -16,7 +16,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/integer_lists', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/combinat/matrices/meson.build b/src/sage/combinat/matrices/meson.build index 3d1cda177a1..63398335f03 100644 --- a/src/sage/combinat/matrices/meson.build +++ b/src/sage/combinat/matrices/meson.build @@ -7,7 +7,7 @@ py.install_sources( ) extension_data_cpp = { - # 'dancing_links': files('dancing_links.pyx'), # not yet on conda + 'dancing_links': files('dancing_links.pyx'), } foreach name, pyx : extension_data_cpp @@ -17,7 +17,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/combinat/posets/meson.build b/src/sage/combinat/posets/meson.build index 17faf8c1d80..11fd51fbc62 100644 --- a/src/sage/combinat/posets/meson.build +++ b/src/sage/combinat/posets/meson.build @@ -27,7 +27,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/posets', install: true, include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, flint, gmp], ) endforeach diff --git a/src/sage/combinat/rigged_configurations/meson.build b/src/sage/combinat/rigged_configurations/meson.build index b4ba8f3101a..7d6630b9378 100644 --- a/src/sage/combinat/rigged_configurations/meson.build +++ b/src/sage/combinat/rigged_configurations/meson.build @@ -34,7 +34,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/rigged_configurations', install: true, include_directories: [], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/combinat/root_system/meson.build b/src/sage/combinat/root_system/meson.build index ac4f179719b..344a26639f7 100644 --- a/src/sage/combinat/root_system/meson.build +++ b/src/sage/combinat/root_system/meson.build @@ -68,7 +68,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/root_system', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/combinat/words/meson.build b/src/sage/combinat/words/meson.build index bf2980a07af..f9e0acd56a0 100644 --- a/src/sage/combinat/words/meson.build +++ b/src/sage/combinat/words/meson.build @@ -29,7 +29,7 @@ foreach name, pyx : extension_data subdir: 'sage/combinat/words', install: true, include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build index d7a55aa2d7b..3653d0cfe0b 100644 --- a/src/sage/cpython/meson.build +++ b/src/sage/cpython/meson.build @@ -22,7 +22,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/cpython', install: true, - include_directories: [inc_src], - dependencies: py_dep, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], ) endforeach + diff --git a/src/sage/crypto/meson.build b/src/sage/crypto/meson.build new file mode 100644 index 00000000000..a6a32908e5e --- /dev/null +++ b/src/sage/crypto/meson.build @@ -0,0 +1,35 @@ +py.install_sources( + '__init__.py', + 'all.py', + 'cipher.py', + 'classical.py', + 'classical_cipher.py', + 'cryptosystem.py', + 'lattice.py', + 'lfsr.py', + 'lwe.py', + 'sboxes.py', + 'stream.py', + 'stream_cipher.py', + 'util.py', + subdir: 'sage/crypto', +) + +extension_data = { + 'boolean_function': files('boolean_function.pyx'), + 'sbox': files('sbox.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/crypto', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +install_subdir('block_cipher', install_dir: sage_install_dir / 'crypto') +install_subdir('mq', install_dir: sage_install_dir / 'crypto') +install_subdir('public_key', install_dir: sage_install_dir / 'crypto') diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index d79435dcd6d..ad656c3cab6 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -1,4 +1,5 @@ py.install_sources( + '__init__.py', 'all.py', 'mutable_poset.py', 'stream.py', @@ -6,11 +7,11 @@ py.install_sources( ) extension_data = { - #'binary_search': files('binary_search.pyx'), compilation error + 'binary_search': files('binary_search.pyx'), 'bitset': files('bitset.pyx'), 'bitset_base': files('bitset_base.pyx'), 'blas_dict': files('blas_dict.pyx'), - #'bounded_integer_sequences': files('bounded_integer_sequences.pyx'), requires flint + 'bounded_integer_sequences': files('bounded_integer_sequences.pyx'), 'list_of_pairs': files('list_of_pairs.pyx'), } @@ -19,7 +20,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/data_structures', install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, gmp], + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], ) endforeach + diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index 7fc1a937831..f86e7f8abe2 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -4,14 +4,12 @@ py.install_sources( ) extension_data = { - #'wrapper_cc': files('wrapper_cc.pyx'), - compiliation error - #'wrapper_cdf': files('wrapper_cdf.pyx'), - compiliation error - #'wrapper_el': files('wrapper_el.pyx'), - compiliation error + #'wrapper_cc': files('wrapper_cc.pyx'), # compilation error + #'wrapper_cdf': files('wrapper_cdf.pyx'), # compilation error + #'wrapper_el': files('wrapper_el.pyx'), # compilation error 'wrapper_py': files('wrapper_py.pyx'), 'wrapper_rdf': files('wrapper_rdf.pyx'), - #'wrapper_rr': files('wrapper_rr.pyx'), - compiliation error -} -extension_data_cpp = { + #'wrapper_rr': files('wrapper_rr.pyx'), # compilation error } foreach name, pyx : extension_data @@ -19,17 +17,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/ext/interpreters', install: true, - include_directories: [inc_cpython, inc_src], - dependencies: [py_dep, cypari2, cysignals], - ) -endforeach -foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/ext/interpreters', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_src], - dependencies: [py_dep, cypari2, cysignals], + include_directories: [inc_cpython, inc_ext, inc_interpreters, inc_rings, inc_src], + dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari], ) endforeach + diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 4ac3a117bef..7f7aadedad5 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -15,8 +15,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/ext', install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, cypari2, gmp], + include_directories: [inc_cpython, inc_ext], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/functions/meson.build b/src/sage/functions/meson.build new file mode 100644 index 00000000000..23e895c0e47 --- /dev/null +++ b/src/sage/functions/meson.build @@ -0,0 +1,38 @@ +py.install_sources( + 'airy.py', + 'all.py', + 'bessel.py', + 'error.py', + 'exp_integral.py', + 'gamma.py', + 'generalized.py', + 'hyperbolic.py', + 'hypergeometric.py', + 'jacobi.py', + 'log.py', + 'min_max.py', + 'orthogonal_polys.py', + 'other.py', + 'piecewise.py', + 'special.py', + 'spike_function.py', + 'transcendental.py', + 'trig.py', + 'wigner.py', + subdir: 'sage/functions', +) + +extension_data = { + 'prime_pi': files('prime_pi.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/functions', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/games/meson.build b/src/sage/games/meson.build new file mode 100644 index 00000000000..bc0092e4bf2 --- /dev/null +++ b/src/sage/games/meson.build @@ -0,0 +1,22 @@ +py.install_sources( + 'all.py', + 'hexad.py', + 'quantumino.py', + 'sudoku.py', + subdir: 'sage/games', +) + +extension_data = { + 'sudoku_backtrack': files('sudoku_backtrack.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/games', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/geometry/meson.build b/src/sage/geometry/meson.build new file mode 100644 index 00000000000..ce70f0d691a --- /dev/null +++ b/src/sage/geometry/meson.build @@ -0,0 +1,46 @@ +py.install_sources( + 'all.py', + 'cone.py', + 'cone_catalog.py', + 'convex_set.py', + 'fan.py', + 'fan_isomorphism.py', + 'fan_morphism.py', + 'hasse_diagram.py', + 'integral_points.py', + 'lattice_polytope.py', + 'linear_expression.py', + 'newton_polygon.py', + 'polyhedral_complex.py', + 'pseudolines.py', + 'relative_interior.py', + 'ribbon_graph.py', + 'toric_lattice.py', + 'toric_plotter.py', + 'voronoi_diagram.py', + subdir: 'sage/geometry', +) + +extension_data = { + 'abc': files('abc.pyx'), + 'integral_points_generic_dense': files('integral_points_generic_dense.pyx'), + 'integral_points_integer_dense': files('integral_points_integer_dense.pyx'), + 'point_collection': files('point_collection.pyx'), + 'toric_lattice_element': files('toric_lattice_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/geometry', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) +endforeach + +install_subdir('hyperbolic_space', install_dir: sage_install_dir / 'geometry') +install_subdir('hyperplane_arrangement', install_dir: sage_install_dir / 'geometry') +install_subdir('polyhedron', install_dir: sage_install_dir / 'geometry') +install_subdir('riemannian_manifolds', install_dir: sage_install_dir / 'geometry') +subdir('triangulation') diff --git a/src/sage/geometry/triangulation/meson.build b/src/sage/geometry/triangulation/meson.build new file mode 100644 index 00000000000..a47c8b06a1e --- /dev/null +++ b/src/sage/geometry/triangulation/meson.build @@ -0,0 +1,22 @@ +py.install_sources( + 'all.py', + 'element.py', + 'point_configuration.py', + subdir: 'sage/geometry/triangulation', +) + +extension_data_cpp = { + 'base': files('base.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/geometry/triangulation', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index 573a22616e6..9d8f61a95f2 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -7,7 +7,7 @@ py.install_sources( extension_data = { 'dense_graph': files('dense_graph.pyx'), 'graph_backends': files('graph_backends.pyx'), - #'sparse_graph': files('sparse_graph.pyx'), # compilation error + 'sparse_graph': files('sparse_graph.pyx'), 'static_dense_graph': files('static_dense_graph.pyx'), 'static_sparse_backend': files('static_sparse_backend.pyx'), } @@ -17,15 +17,15 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/graphs/base', install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach extension_data_cpp = { 'boost_graph': files('boost_graph.pyx'), 'c_graph': files('c_graph.pyx'), - #'static_sparse_graph': files('static_sparse_graph.pyx'), # compilation error + # 'static_sparse_graph': files('static_sparse_graph.pyx'), # compilation error } foreach name, pyx : extension_data_cpp @@ -35,7 +35,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/graphs/generators/meson.build b/src/sage/graphs/generators/meson.build index 28b7bcccbdf..43667d84f80 100644 --- a/src/sage/graphs/generators/meson.build +++ b/src/sage/graphs/generators/meson.build @@ -23,7 +23,7 @@ foreach name, pyx : extension_data subdir: 'sage/graphs/generators', install: true, include_directories: [], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 3c877e0134a..25dd8703c57 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -1,4 +1,14 @@ -tdlib = dependency('tdlib', required: false) +tdlib = declare_dependency( + dependencies: [ + cc.find_library('tdlib', required: false), + ] +) +# Cannot be found via pkg-config +rw = declare_dependency( + dependencies: [ + cc.find_library('rw'), + ] +) py.install_sources( 'all.py', @@ -23,7 +33,7 @@ foreach name, pyx : extension_data subdir: 'sage/graphs/graph_decompositions', install: true, include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp, rw], ) endforeach @@ -38,18 +48,19 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp, rw], ) endforeach if tdlib.found() - py.extension_module('tdlib', - sources: 'tdlib.pyx', - subdir: 'sage/graphs/graph_decompositions', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, tdlib], - ) + # Still cannot find the tdlib headers + # py.extension_module('tdlib', + # sources: 'tdlib.pyx', + # subdir: 'sage/graphs/graph_decompositions', + # install: true, + # override_options : ['cython_language=cpp'], + # include_directories: [inc_cpython, inc_data_structures], + # dependencies: [py_dep, cysignals, tdlib], + # ) endif diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 2ee1d5b2c34..737005610c1 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -1,6 +1,20 @@ -bliss = dependency('bliss', required: false) -mcqd = dependency('mcqd', required: false) +bliss = declare_dependency( + dependencies: [ + cc.find_library('bliss', required: false), + ] +) +mcqd = declare_dependency( + dependencies: [ + cc.find_library('mcqd', required: false), + ] +) +# Cannot be found via pkg-config +planarity = declare_dependency( + dependencies: [ + cc.find_library('planarity'), + ] +) py.install_sources( 'all.py', 'all__sagemath_bliss.py', @@ -64,7 +78,7 @@ foreach name, pyx : extension_data subdir: 'sage/graphs', install: true, include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, flint, gmp, planarity], ) endforeach @@ -82,26 +96,30 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, flint, gmp, planarity], ) endforeach if bliss.found() - py.extension_module('bliss', - sources: files('bliss.pyx'), - subdir: 'sage/graphs', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, bliss], - ) + # Still cannot find the bliss header + # py.extension_module('bliss', + # sources: files('bliss.pyx'), + # subdir: 'sage/graphs', + # install: true, + # override_options : ['cython_language=cpp'], + # include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + # dependencies: [py_dep, cysignals, bliss], + # ) endif if mcqd.found() - py.extension_module('mcqd', - sources: files('mcqd.pyx'), - subdir: 'sage/graphs', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, mcqd], - ) + # Still cannot find the mcqd header + # py.extension_module('mcqd', + # sources: files('mcqd.pyx'), + # subdir: 'sage/graphs', + # install: true, + # override_options : ['cython_language=cpp'], + # include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + # dependencies: [py_dep, cysignals, mcqd], + # ) endif subdir('base') diff --git a/src/sage/groups/matrix_gps/meson.build b/src/sage/groups/matrix_gps/meson.build new file mode 100644 index 00000000000..51348e1110b --- /dev/null +++ b/src/sage/groups/matrix_gps/meson.build @@ -0,0 +1,42 @@ +py.install_sources( + 'all.py', + 'binary_dihedral.py', + 'catalog.py', + 'coxeter_group.py', + 'finitely_generated.py', + 'finitely_generated_gap.py', + 'heisenberg.py', + 'homset.py', + 'isometries.py', + 'linear.py', + 'linear_gap.py', + 'matrix_group.py', + 'matrix_group_gap.py', + 'morphism.py', + 'named_group.py', + 'named_group_gap.py', + 'orthogonal.py', + 'orthogonal_gap.py', + 'pickling_overrides.py', + 'symplectic.py', + 'symplectic_gap.py', + 'unitary.py', + 'unitary_gap.py', + subdir: 'sage/groups/matrix_gps', +) + +extension_data = { + 'group_element': files('group_element.pyx'), + 'group_element_gap': files('group_element_gap.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/groups/matrix_gps', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/groups/meson.build b/src/sage/groups/meson.build index e03f61b1ec4..648a9666b0b 100644 --- a/src/sage/groups/meson.build +++ b/src/sage/groups/meson.build @@ -25,11 +25,6 @@ py.install_sources( 'raag.py', subdir: 'sage/groups', ) -install_subdir('abelian_gps', install_dir: sage_install_dir / 'groups') -install_subdir('additive_abelian', install_dir: sage_install_dir / 'groups') -install_subdir('affine_gps', install_dir: sage_install_dir / 'groups') -install_subdir('lie_gps', install_dir: sage_install_dir / 'groups') -install_subdir('misc_gps', install_dir: sage_install_dir / 'groups') extension_data = { 'group': files('group.pyx'), @@ -43,6 +38,15 @@ foreach name, pyx : extension_data subdir: 'sage/groups', install: true, include_directories: [inc_cpython], - dependencies: [py_dep], + dependencies: [py_dep, gmp], ) endforeach + +install_subdir('abelian_gps', install_dir: sage_install_dir / 'groups') +install_subdir('additive_abelian', install_dir: sage_install_dir / 'groups') +install_subdir('affine_gps', install_dir: sage_install_dir / 'groups') +install_subdir('lie_gps', install_dir: sage_install_dir / 'groups') +subdir('matrix_gps') +install_subdir('misc_gps', install_dir: sage_install_dir / 'groups') +subdir('perm_gps') +subdir('semimonomial_transformations') diff --git a/src/sage/groups/perm_gps/meson.build b/src/sage/groups/perm_gps/meson.build new file mode 100644 index 00000000000..ab4070d34b1 --- /dev/null +++ b/src/sage/groups/perm_gps/meson.build @@ -0,0 +1,28 @@ +py.install_sources( + 'all.py', + 'constructor.py', + 'cubegroup.py', + 'permgroup.py', + 'permgroup_morphism.py', + 'permgroup_named.py', + 'permutation_groups_catalog.py', + 'symgp_conjugacy_class.py', + subdir: 'sage/groups/perm_gps', +) + +extension_data = { + 'permgroup_element': files('permgroup_element.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/groups/perm_gps', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +subdir('partn_ref') +subdir('partn_ref2') diff --git a/src/sage/groups/perm_gps/partn_ref/meson.build b/src/sage/groups/perm_gps/partn_ref/meson.build new file mode 100644 index 00000000000..3e741020944 --- /dev/null +++ b/src/sage/groups/perm_gps/partn_ref/meson.build @@ -0,0 +1,28 @@ +py.install_sources( + 'all.py', + subdir: 'sage/groups/perm_gps/partn_ref', +) + +extension_data = { + 'automorphism_group_canonical_label': files('automorphism_group_canonical_label.pyx'), + 'canonical_augmentation': files('canonical_augmentation.pyx'), + 'data_structures': files('data_structures.pyx'), + 'double_coset': files('double_coset.pyx'), + 'refinement_binary': files('refinement_binary.pyx'), + 'refinement_graphs': files('refinement_graphs.pyx'), + 'refinement_lists': files('refinement_lists.pyx'), + 'refinement_matrices': files('refinement_matrices.pyx'), + 'refinement_python': files('refinement_python.pyx'), + 'refinement_sets': files('refinement_sets.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/groups/perm_gps/partn_ref', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/groups/perm_gps/partn_ref2/meson.build b/src/sage/groups/perm_gps/partn_ref2/meson.build new file mode 100644 index 00000000000..76838c53d74 --- /dev/null +++ b/src/sage/groups/perm_gps/partn_ref2/meson.build @@ -0,0 +1,19 @@ +py.install_sources( + 'all.py', + subdir: 'sage/groups/perm_gps/partn_ref2', +) + +extension_data = { + 'refinement_generic': files('refinement_generic.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/groups/perm_gps/partn_ref2', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_partn_ref2], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/groups/semimonomial_transformations/meson.build b/src/sage/groups/semimonomial_transformations/meson.build new file mode 100644 index 00000000000..c05e3e2d2b5 --- /dev/null +++ b/src/sage/groups/semimonomial_transformations/meson.build @@ -0,0 +1,20 @@ +py.install_sources( + 'all.py', + 'semimonomial_transformation_group.py', + subdir: 'sage/groups/semimonomial_transformations', +) + +extension_data = { + 'semimonomial_transformation': files('semimonomial_transformation.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/groups/semimonomial_transformations', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/interacts/meson.build b/src/sage/interacts/meson.build new file mode 100644 index 00000000000..aa72c33da62 --- /dev/null +++ b/src/sage/interacts/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + 'algebra.py', + 'all.py', + 'calculus.py', + 'fractals.py', + 'geometry.py', + 'library.py', + 'statistics.py', + subdir: 'sage/interacts', +) + +extension_data = { + 'library_cython': files('library_cython.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/interacts', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build index f3a4c50e13d..3a9d7b872fb 100644 --- a/src/sage/interfaces/meson.build +++ b/src/sage/interfaces/meson.build @@ -71,6 +71,7 @@ foreach name, pyx : extension_data subdir: 'sage/interfaces', install: true, include_directories: [inc_cpython], - dependencies: [py_dep], + dependencies: [py_dep, gmp], ) endforeach + diff --git a/src/sage/lfunctions/meson.build b/src/sage/lfunctions/meson.build new file mode 100644 index 00000000000..50d701cba55 --- /dev/null +++ b/src/sage/lfunctions/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + 'all.py', + 'dokchitser.py', + 'lcalc.py', + 'pari.py', + 'sympow.py', + subdir: 'sage/lfunctions', +) + +extension_data = { + 'zero_sums': files('zero_sums.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/lfunctions', + install: true, + include_directories: [inc_flint], + dependencies: [py_dep, flint, gmp], + ) +endforeach + diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index d229f513c9a..e3b521de3ba 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -14,7 +14,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/arb', install: true, include_directories: [inc_arb, inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, flint, gmp, mpfr], ) endforeach diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index 559e86ac2cb..d47852e4d7b 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -6,20 +6,21 @@ py.install_sources( subdir: 'sage/libs/eclib', ) -extension_data = { - # 'homspace': files('homspace.pyx'), # not yet on conda - # 'mat': files('mat.pyx'), # not yet on conda - # 'mwrank': files('mwrank.pyx'), # not yet on conda - # 'newforms': files('newforms.pyx'), # not yet on conda +extension_data_cpp = { + 'homspace': files('homspace.pyx'), + 'mat': files('mat.pyx'), + 'mwrank': files('mwrank.pyx'), + 'newforms': files('newforms.pyx'), } -foreach name, pyx : extension_data +foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/libs/eclib', install: true, - include_directories: [], - dependencies: [py_dep, cysignals], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], ) endforeach diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index fdfbdb86180..3411fea4911 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -17,7 +17,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/libs/flint', install: true, - include_directories: [inc_cpython, inc_src, inc_rings], - dependencies: [py_dep, cysignals, gmp, flint], + include_directories: [inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp, mpfr], ) endforeach + diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index b3ae1e4ae0c..59885f1efed 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -24,7 +24,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/gap', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index ac8e5f56b09..e18c79d5dce 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -1,11 +1,16 @@ +giac = declare_dependency( + dependencies: [ + cc.find_library('giac', required: false), + ] +) + py.install_sources( '__init__.py', subdir: 'sage/libs/giac', ) - extension_data_cpp = { - # 'giac': files('giac.pyx'), # not yet on conda + 'giac': files('giac.pyx'), } foreach name, pyx : extension_data_cpp @@ -14,8 +19,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/libs/giac', install: true, override_options : ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, giac, gmp], ) endforeach diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build index efca456cef4..05f81795705 100644 --- a/src/sage/libs/glpk/meson.build +++ b/src/sage/libs/glpk/meson.build @@ -13,7 +13,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/glpk', install: true, include_directories: [inc_cpython], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 1145393220a..35a3a5af964 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -16,3 +16,4 @@ foreach name, pyx : extension_data dependencies: [py_dep, gmp], ) endforeach + diff --git a/src/sage/libs/gsl/meson.build b/src/sage/libs/gsl/meson.build index 4d7d3c61a4d..fb85c2f0026 100644 --- a/src/sage/libs/gsl/meson.build +++ b/src/sage/libs/gsl/meson.build @@ -12,6 +12,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/libs/gsl', install: true, - dependencies: [py_dep, cysignals], + include_directories: [inc_gsl], + dependencies: [py_dep, cysignals, gmp, gsl], ) endforeach + diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build index 1b0d35872d9..6d170655920 100644 --- a/src/sage/libs/lcalc/meson.build +++ b/src/sage/libs/lcalc/meson.build @@ -3,9 +3,8 @@ py.install_sources( subdir: 'sage/libs/lcalc', ) - extension_data_cpp = { - # 'lcalc_Lfunction': files('lcalc_Lfunction.pyx'), # not yet on conda + 'lcalc_Lfunction': files('lcalc_Lfunction.pyx'), } foreach name, pyx : extension_data_cpp @@ -14,8 +13,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/libs/lcalc', install: true, override_options : ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cypari2, cysignals, gmp, lfunction, m, mpfr, ntl], ) endforeach diff --git a/src/sage/libs/linbox/meson.build b/src/sage/libs/linbox/meson.build index 6e1e46e6e0a..a18e7799cd7 100644 --- a/src/sage/libs/linbox/meson.build +++ b/src/sage/libs/linbox/meson.build @@ -3,17 +3,18 @@ py.install_sources( subdir: 'sage/libs/linbox', ) -extension_data = { - # 'linbox_flint_interface': files('linbox_flint_interface.pyx'), # not yet on conda +extension_data_cpp = { + 'linbox_flint_interface': files('linbox_flint_interface.pyx'), } -foreach name, pyx : extension_data +foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/libs/linbox', install: true, - include_directories: [], - dependencies: [py_dep, cysignals], + override_options : ['cython_language=cpp'], + include_directories: [inc_flint], + dependencies: [py_dep, cblas, flint, givaro, gmp, gmpxx, linbox], ) endforeach diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index e15a710a4b7..eb4bcbb2c3d 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -1,3 +1,8 @@ +sirocco = declare_dependency( + dependencies: [ + cc.find_library('sirocco', required: false), + ] +) py.install_sources( 'all.py', 'all__sagemath_coxeter3.py', @@ -7,21 +12,17 @@ py.install_sources( subdir: 'sage/libs', ) -extension_data_cpp = { - 'braiding': files('braiding.pyx'), -} extension_data = { 'ecl': files('ecl.pyx'), 'homfly': files('homfly.pyx'), 'libecm': files('libecm.pyx'), - #'meataxe': files('meataxe.pyx'),# - need meataxe + #'meataxe': files('meataxe.pyx'), # not yet on conda - need meataxe } -dependencies = [py_dep, cysignals, cypari2] +dependencies = [py_dep, braiding, cysignals, ecm, gc, gmp, homfly, mtx, sirocco] -sirocco = dependency('sirocco', required: false) if sirocco.found() - #extension_data['sirocco'] += files('sirocco.pxd') + #extension_data['sirocco'] += files('sirocco.pxd') # not yet on conda dependencies += [sirocco] endif @@ -30,29 +31,29 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/libs', install: true, - include_directories: [inc_cpython], + include_directories: [inc_cpython, inc_rings], dependencies: dependencies, ) endforeach + +extension_data_cpp = { + 'braiding': files('braiding.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/libs', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython], + include_directories: [inc_cpython, inc_rings], dependencies: dependencies, ) endforeach -install_subdir('cremona', install_dir: sage_install_dir / 'libs') -install_subdir('linkages', install_dir: sage_install_dir / 'libs') -install_subdir('lrcalc', install_dir: sage_install_dir / 'libs') -install_subdir('mwrank', install_dir: sage_install_dir / 'libs') -install_subdir('pynac', install_dir: sage_install_dir / 'libs') - subdir('arb') subdir('coxeter3') +install_subdir('cremona', install_dir: sage_install_dir / 'libs') subdir('eclib') subdir('flint') subdir('gap') @@ -62,8 +63,12 @@ subdir('gmp') subdir('gsl') subdir('lcalc') subdir('linbox') +install_subdir('linkages', install_dir: sage_install_dir / 'libs') +install_subdir('lrcalc', install_dir: sage_install_dir / 'libs') subdir('mpmath') +install_subdir('mwrank', install_dir: sage_install_dir / 'libs') subdir('ntl') subdir('pari') +install_subdir('pynac', install_dir: sage_install_dir / 'libs') subdir('singular') subdir('symmetrica') diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build index e581ea7161f..edd7851e4f6 100644 --- a/src/sage/libs/mpmath/meson.build +++ b/src/sage/libs/mpmath/meson.build @@ -16,7 +16,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/libs/mpmath', install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, cypari2, gmp, mpfr], + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cypari2, cysignals, gmp, mpfr], ) endforeach + diff --git a/src/sage/libs/ntl/meson.build b/src/sage/libs/ntl/meson.build index ae5d9880c15..8f1794a2f7b 100644 --- a/src/sage/libs/ntl/meson.build +++ b/src/sage/libs/ntl/meson.build @@ -33,8 +33,9 @@ foreach name, pyx : extension_data_cpp sources: pyx, subdir: 'sage/libs/ntl', install: true, - include_directories: [inc_cpython, inc_ext, inc_rings_finite], - override_options: ['cython_language=cpp'], - dependencies: [py_dep, cysignals, ntl], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, cysignals, gmp, m, ntl], ) endforeach + diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 4950b10473e..3250e59b85a 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -19,7 +19,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/libs/pari', install: true, - include_directories: [inc_flint, inc_cpython], - dependencies: [py_dep, cypari2, cysignals, gmp, pari], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, gsl, mpfr, pari], ) endforeach + diff --git a/src/sage/libs/singular/meson.build b/src/sage/libs/singular/meson.build index 96f592c0b02..99e88d5b1ec 100644 --- a/src/sage/libs/singular/meson.build +++ b/src/sage/libs/singular/meson.build @@ -5,22 +5,23 @@ py.install_sources( subdir: 'sage/libs/singular', ) -extension_data = { - # 'function': files('function.pyx'), # not yet on conda - # 'groebner_strategy': files('groebner_strategy.pyx'), # not yet on conda - # 'option': files('option.pyx'), # not yet on conda - # 'polynomial': files('polynomial.pyx'), # not yet on conda - # 'ring': files('ring.pyx'), # not yet on conda - # 'singular': files('singular.pyx'), # not yet on conda +extension_data_cpp = { + 'function': files('function.pyx'), + 'groebner_strategy': files('groebner_strategy.pyx'), + 'option': files('option.pyx'), + 'polynomial': files('polynomial.pyx'), + 'ring': files('ring.pyx'), + 'singular': files('singular.pyx'), } -foreach name, pyx : extension_data +foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/libs/singular', install: true, - include_directories: [], - dependencies: [py_dep, cysignals], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, cysignals, givaro, gmp], ) endforeach diff --git a/src/sage/libs/symmetrica/meson.build b/src/sage/libs/symmetrica/meson.build index 178212c1a1e..8b2d10570ac 100644 --- a/src/sage/libs/symmetrica/meson.build +++ b/src/sage/libs/symmetrica/meson.build @@ -1,3 +1,10 @@ +# Cannot be found by pkg-config +symmetrica = declare_dependency( + dependencies: [ + cc.find_library('symmetrica'), + ] +) + py.install_sources( '__init__.py', 'all.py', @@ -8,18 +15,13 @@ extension_data = { 'symmetrica': files('symmetrica.pyx'), } -# Cannot be found by pkg-config -symmetrica = declare_dependency( - dependencies: [ - cc.find_library('symmetrica'), - ] -) - foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/libs/symmetrica', install: true, - dependencies: [py_dep, cysignals, symmetrica], + include_directories: [], + dependencies: [py_dep, cysignals, gmp, symmetrica], ) endforeach + diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index f2a3bab7bda..3e7afdf609d 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -70,7 +70,7 @@ foreach name, pyx : extension_data subdir: 'sage/matrix', install: true, include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mtx, ntl, pari, png, zlib], + dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib], ) endforeach @@ -94,7 +94,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mtx, ntl, pari, png, zlib], + dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib], ) endforeach diff --git a/src/sage/matroids/meson.build b/src/sage/matroids/meson.build new file mode 100644 index 00000000000..f018aea355e --- /dev/null +++ b/src/sage/matroids/meson.build @@ -0,0 +1,39 @@ +py.install_sources( + 'advanced.py', + 'all.py', + 'catalog.py', + 'constructor.py', + 'dual_matroid.py', + 'graphic_matroid.py', + 'matroids_catalog.py', + 'matroids_plot_helpers.py', + 'minor_matroid.py', + 'named_matroids.py', + 'rank_matroid.py', + 'utilities.py', + subdir: 'sage/matroids', +) + +extension_data = { + 'basis_exchange_matroid': files('basis_exchange_matroid.pyx'), + 'basis_matroid': files('basis_matroid.pyx'), + 'circuit_closures_matroid': files('circuit_closures_matroid.pyx'), + 'extension': files('extension.pyx'), + 'lean_matrix': files('lean_matrix.pyx'), + 'linear_matroid': files('linear_matroid.pyx'), + 'matroid': files('matroid.pyx'), + 'set_system': files('set_system.pyx'), + 'union_matroid': files('union_matroid.pyx'), + 'unpickling': files('unpickling.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/matroids', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/meson.build b/src/sage/meson.build index bd87f6f21ec..7513244c0b2 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -2,9 +2,19 @@ sage_install_dir = py.get_install_dir() / 'sage' # Packages that need no processing and can be installed directly no_processing = [ - 'repl', + 'databases', 'doctest', + 'dynamics', 'features', + 'game_theory', + 'homology', + 'knots', + 'logic', + 'manifolds', + 'parallel', + 'repl', + 'sandpiles', + 'sat', 'tensor', 'topology', 'typeset', @@ -14,6 +24,7 @@ foreach package : no_processing endforeach py.install_sources( + '__init__.py', 'all.py', 'all__sagemath_bliss.py', 'all__sagemath_categories.py', @@ -35,20 +46,36 @@ subdir('cpython') subdir('libs') subdir('misc') subdir('structure') -subdir('categories') -subdir('sets') -subdir('data_structures') -subdir('rings') +subdir('algebras') subdir('arith') +subdir('calculus') +subdir('categories') +subdir('coding') subdir('combinat') -subdir('modules') -subdir('tests') +subdir('crypto') +subdir('data_structures') subdir('ext') -subdir('interfaces') +subdir('functions') +subdir('games') +subdir('geometry') +subdir('graphs') subdir('groups') +subdir('interacts') +subdir('interfaces') +subdir('lfunctions') subdir('matrix') -subdir('graphs') -subdir('algebras') +subdir('matroids') +subdir('modular') +subdir('modules') subdir('monoids') -subdir('symbolic') +subdir('numerical') +subdir('plot') +subdir('probability') subdir('quadratic_forms') +subdir('quivers') +subdir('rings') +subdir('schemes') +subdir('sets') +subdir('stats') +subdir('symbolic') +subdir('tests') diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index 5556645215a..066990166db 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -114,8 +114,9 @@ foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/misc', - include_directories: [inc_cpython], install: true, + include_directories: [inc_cpython, inc_rings], dependencies: [py_dep, cysignals, gmp], ) endforeach + diff --git a/src/sage/modular/arithgroup/all.py b/src/sage/modular/arithgroup/all.py index d4fb241d1f9..0597ae7b886 100644 --- a/src/sage/modular/arithgroup/all.py +++ b/src/sage/modular/arithgroup/all.py @@ -15,4 +15,6 @@ from .congroup import (degeneracy_coset_representatives_gamma0, degeneracy_coset_representatives_gamma1) -from .farey_symbol import Farey as FareySymbol +# Cannot find FareySymbol (and I don't know where to look for it) +#from .farey_symbol import Farey as FareySymbol +FareySymbol = None diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build new file mode 100644 index 00000000000..50dca19bc89 --- /dev/null +++ b/src/sage/modular/arithgroup/meson.build @@ -0,0 +1,44 @@ +py.install_sources( + 'all.py', + 'arithgroup_generic.py', + 'arithgroup_perm.py', + 'congroup_gamma.py', + 'congroup_gamma0.py', + 'congroup_gamma1.py', + 'congroup_gammaH.py', + 'congroup_generic.py', + 'congroup_sl2z.py', + 'tests.py', + subdir: 'sage/modular/arithgroup', +) + +extension_data = { + 'arithgroup_element': files('arithgroup_element.pyx'), + 'congroup': files('congroup.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modular/arithgroup', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) +endforeach + +extension_data_cpp = { + 'farey_symbol': files('farey_symbol.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/modular/arithgroup', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) +endforeach + diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build new file mode 100644 index 00000000000..fca36f6d674 --- /dev/null +++ b/src/sage/modular/meson.build @@ -0,0 +1,43 @@ +py.install_sources( + 'all.py', + 'buzzard.py', + 'congroup.py', + 'congroup_element.py', + 'cusps.py', + 'cusps_nf.py', + 'dims.py', + 'dirichlet.py', + 'etaproducts.py', + 'hypergeometric_motive.py', + 'multiple_zeta.py', + 'multiple_zeta_F_algebra.py', + subdir: 'sage/modular', +) + +extension_data = { + 'hypergeometric_misc': files('hypergeometric_misc.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modular', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +install_subdir('abvar', install_dir: sage_install_dir / 'modular') +subdir('arithgroup') +install_subdir('btquotients', install_dir: sage_install_dir / 'modular') +install_subdir('hecke', install_dir: sage_install_dir / 'modular') +install_subdir('local_comp', install_dir: sage_install_dir / 'modular') +subdir('modform') +install_subdir('modform_hecketriangle', install_dir: sage_install_dir / 'modular') +subdir('modsym') +install_subdir('overconvergent', install_dir: sage_install_dir / 'modular') +subdir('pollack_stevens') +install_subdir('quasimodform', install_dir: sage_install_dir / 'modular') +install_subdir('quatalg', install_dir: sage_install_dir / 'modular') +install_subdir('ssmod', install_dir: sage_install_dir / 'modular') diff --git a/src/sage/modular/modform/meson.build b/src/sage/modular/modform/meson.build new file mode 100644 index 00000000000..e80b0324357 --- /dev/null +++ b/src/sage/modular/modform/meson.build @@ -0,0 +1,46 @@ +py.install_sources( + 'all.py', + 'ambient.py', + 'ambient_R.py', + 'ambient_eps.py', + 'ambient_g0.py', + 'ambient_g1.py', + 'constructor.py', + 'cuspidal_submodule.py', + 'defaults.py', + 'eis_series.py', + 'eisenstein_submodule.py', + 'element.py', + 'find_generators.py', + 'half_integral.py', + 'hecke_operator_on_qexp.py', + 'j_invariant.py', + 'l_series_gross_zagier.py', + 'notes.py', + 'numerical.py', + 'periods.py', + 'ring.py', + 'space.py', + 'submodule.py', + 'tests.py', + 'theta.py', + 'vm_basis.py', + 'weight1.py', + subdir: 'sage/modular/modform', +) + +extension_data = { + 'eis_series_cython': files('eis_series_cython.pyx'), + 'l_series_gross_zagier_coeffs': files('l_series_gross_zagier_coeffs.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modular/modform', + install: true, + include_directories: [inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) +endforeach + diff --git a/src/sage/modular/modsym/meson.build b/src/sage/modular/modsym/meson.build new file mode 100644 index 00000000000..e3c62628de4 --- /dev/null +++ b/src/sage/modular/modsym/meson.build @@ -0,0 +1,37 @@ +py.install_sources( + 'all.py', + 'ambient.py', + 'boundary.py', + 'element.py', + 'g1list.py', + 'ghlist.py', + 'hecke_operator.py', + 'manin_symbol_list.py', + 'modsym.py', + 'modular_symbols.py', + 'p1list_nf.py', + 'relation_matrix.py', + 'space.py', + 'subspace.py', + 'tests.py', + subdir: 'sage/modular/modsym', +) + +extension_data = { + 'apply': files('apply.pyx'), + 'heilbronn': files('heilbronn.pyx'), + 'manin_symbol': files('manin_symbol.pyx'), + 'p1list': files('p1list.pyx'), + 'relation_matrix_pyx': files('relation_matrix_pyx.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modular/modsym', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) +endforeach + diff --git a/src/sage/modular/pollack_stevens/meson.build b/src/sage/modular/pollack_stevens/meson.build new file mode 100644 index 00000000000..b2e360ee861 --- /dev/null +++ b/src/sage/modular/pollack_stevens/meson.build @@ -0,0 +1,26 @@ +py.install_sources( + 'all.py', + 'distributions.py', + 'fund_domain.py', + 'manin_map.py', + 'modsym.py', + 'padic_lseries.py', + 'sigma0.py', + 'space.py', + subdir: 'sage/modular/pollack_stevens', +) + +extension_data = { + 'dist': files('dist.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/modular/pollack_stevens', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 76169bd776d..6fcfc0f7ae4 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -35,7 +35,6 @@ extension_data = { 'vector_double_dense': files('vector_double_dense.pyx'), 'vector_integer_dense': files('vector_integer_dense.pyx'), 'vector_integer_sparse': files('vector_integer_sparse.pyx'), - 'vector_mod2_dense': files('vector_mod2_dense.pyx'), 'vector_modn_dense': files('vector_modn_dense.pyx'), 'vector_modn_sparse': files('vector_modn_sparse.pyx'), 'vector_numpy_dense': files('vector_numpy_dense.pyx'), @@ -50,8 +49,23 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/modules', install: true, - include_directories: [inc_cpython, inc_numpy, inc_rings_finite, inc_ext], - dependencies: [py_dep, cysignals, gmp], + include_directories: [inc_cpython, inc_ext, inc_numpy, inc_rings, inc_rings_finite], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], + ) +endforeach + +extension_data_cpp = { + 'vector_mod2_dense': files('vector_mod2_dense.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/modules', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_numpy, inc_rings, inc_rings_finite], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], ) endforeach diff --git a/src/sage/modules/with_basis/meson.build b/src/sage/modules/with_basis/meson.build index 992afc5bbba..55554a0aa4e 100644 --- a/src/sage/modules/with_basis/meson.build +++ b/src/sage/modules/with_basis/meson.build @@ -18,7 +18,7 @@ foreach name, pyx : extension_data subdir: 'sage/modules/with_basis', install: true, include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build new file mode 100644 index 00000000000..57ae6e5c18d --- /dev/null +++ b/src/sage/numerical/backends/meson.build @@ -0,0 +1,54 @@ +py.install_sources( + 'all.py', + 'all__sagemath_polyhedra.py', + 'cvxopt_backend_test.py', + 'cvxpy_backend_test.py', + 'generic_backend_test.py', + 'glpk_backend_test.py', + 'glpk_exact_backend_test.py', + 'interactivelp_backend_test.py', + 'logging_backend.py', + 'ppl_backend_test.py', + 'scip_backend_test.py', + subdir: 'sage/numerical/backends', +) + +extension_data = { + 'cvxopt_backend': files('cvxopt_backend.pyx'), + 'cvxopt_sdp_backend': files('cvxopt_sdp_backend.pyx'), + 'cvxpy_backend': files('cvxpy_backend.pyx'), + 'generic_backend': files('generic_backend.pyx'), + 'generic_sdp_backend': files('generic_sdp_backend.pyx'), + 'glpk_backend': files('glpk_backend.pyx'), + 'glpk_exact_backend': files('glpk_exact_backend.pyx'), + 'glpk_graph_backend': files('glpk_graph_backend.pyx'), + 'interactivelp_backend': files('interactivelp_backend.pyx'), + 'matrix_sdp_backend': files('matrix_sdp_backend.pyx'), + 'ppl_backend': files('ppl_backend.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/numerical/backends', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +extension_data_cpp = { + 'scip_backend': files('scip_backend.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/numerical/backends', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/numerical/meson.build b/src/sage/numerical/meson.build new file mode 100644 index 00000000000..bb004a460c7 --- /dev/null +++ b/src/sage/numerical/meson.build @@ -0,0 +1,30 @@ +py.install_sources( + 'all.py', + 'all__sagemath_polyhedra.py', + 'interactive_simplex_method.py', + 'knapsack.py', + 'linear_tensor.py', + 'linear_tensor_constraints.py', + 'optimize.py', + subdir: 'sage/numerical', +) + +extension_data = { + 'gauss_legendre': files('gauss_legendre.pyx'), + 'linear_functions': files('linear_functions.pyx'), + 'linear_tensor_element': files('linear_tensor_element.pyx'), + 'mip': files('mip.pyx'), + 'sdp': files('sdp.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/numerical', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cypari2, gmp, mpfr], + ) +endforeach + +subdir('backends') diff --git a/src/sage/plot/meson.build b/src/sage/plot/meson.build new file mode 100644 index 00000000000..a47688cf61f --- /dev/null +++ b/src/sage/plot/meson.build @@ -0,0 +1,49 @@ +py.install_sources( + 'all.py', + 'animate.py', + 'arc.py', + 'arrow.py', + 'bar_chart.py', + 'bezier_path.py', + 'circle.py', + 'colors.py', + 'contour_plot.py', + 'density_plot.py', + 'disk.py', + 'ellipse.py', + 'graphics.py', + 'histogram.py', + 'hyperbolic_arc.py', + 'hyperbolic_polygon.py', + 'hyperbolic_regular_polygon.py', + 'line.py', + 'matrix_plot.py', + 'misc.py', + 'multigraphics.py', + 'plot.py', + 'plot_field.py', + 'point.py', + 'polygon.py', + 'primitive.py', + 'scatter_plot.py', + 'step.py', + 'streamline_plot.py', + 'text.py', + subdir: 'sage/plot', +) + +extension_data = { + 'complex_plot': files('complex_plot.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/plot', + install: true, + include_directories: [inc_cpython, inc_gsl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp, gsl], + ) +endforeach + +subdir('plot3d') diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build new file mode 100644 index 00000000000..b6b12e0ba6b --- /dev/null +++ b/src/sage/plot/plot3d/meson.build @@ -0,0 +1,36 @@ +py.install_sources( + 'all.py', + 'implicit_plot3d.py', + 'introduction.py', + 'list_plot3d.py', + 'parametric_plot3d.py', + 'platonic.py', + 'plot3d.py', + 'plot_field3d.py', + 'revolution_plot3d.py', + 'shapes2.py', + 'tachyon.py', + 'texture.py', + 'tri_plot.py', + subdir: 'sage/plot/plot3d', +) + +extension_data = { + 'base': files('base.pyx'), + 'implicit_surface': files('implicit_surface.pyx'), + 'index_face_set': files('index_face_set.pyx'), + 'parametric_surface': files('parametric_surface.pyx'), + 'shapes': files('shapes.pyx'), + 'transform': files('transform.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/plot/plot3d', + install: true, + include_directories: [inc_cpython, inc_ext, inc_numpy], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/probability/meson.build b/src/sage/probability/meson.build new file mode 100644 index 00000000000..92ac98eb026 --- /dev/null +++ b/src/sage/probability/meson.build @@ -0,0 +1,20 @@ +py.install_sources( + 'all.py', + 'random_variable.py', + subdir: 'sage/probability', +) + +extension_data = { + 'probability_distribution': files('probability_distribution.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/probability', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp, gsl], + ) +endforeach + diff --git a/src/sage/quadratic_forms/meson.build b/src/sage/quadratic_forms/meson.build index c3ef0ef5e9e..64271fb416f 100644 --- a/src/sage/quadratic_forms/meson.build +++ b/src/sage/quadratic_forms/meson.build @@ -42,7 +42,7 @@ foreach name, pyx : extension_data subdir: 'sage/quadratic_forms', install: true, include_directories: [], - dependencies: [py_dep, cysignals, gmp], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/quivers/meson.build b/src/sage/quivers/meson.build new file mode 100644 index 00000000000..35a7459ed1e --- /dev/null +++ b/src/sage/quivers/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + 'algebra.py', + 'all.py', + 'homspace.py', + 'morphism.py', + 'path_semigroup.py', + 'representation.py', + subdir: 'sage/quivers', +) + +extension_data = { + 'algebra_elements': files('algebra_elements.pyx'), + 'paths': files('paths.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/quivers', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build index a4dff8bd420..f438e735f3f 100644 --- a/src/sage/rings/convert/meson.build +++ b/src/sage/rings/convert/meson.build @@ -13,6 +13,7 @@ foreach name, pyx : extension_data subdir: 'sage/rings/convert', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cypari2, mpfi], + dependencies: [py_dep, cypari2, gmp, gsl, mpfi, mpfr, pari], ) endforeach + diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build index 81289341f3b..4db4db3575d 100644 --- a/src/sage/rings/finite_rings/meson.build +++ b/src/sage/rings/finite_rings/meson.build @@ -13,16 +13,11 @@ py.install_sources( subdir: 'sage/rings/finite_rings', ) -extension_data_cpp = { - 'element_givaro': files('element_givaro.pyx'), - 'element_ntl_gf2e': files('element_ntl_gf2e.pyx'), - 'hom_finite_field': files('hom_finite_field.pyx'), - 'hom_finite_field_givaro': files('hom_finite_field_givaro.pyx'), -} extension_data = { 'element_base': files('element_base.pyx'), 'element_pari_ffelt': files('element_pari_ffelt.pyx'), 'finite_field_base': files('finite_field_base.pyx'), + 'hom_finite_field': files('hom_finite_field.pyx'), 'hom_prime_finite_field': files('hom_prime_finite_field.pyx'), 'integer_mod': files('integer_mod.pyx'), 'residue_field': files('residue_field.pyx'), @@ -36,17 +31,25 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/finite_rings', install: true, - include_directories: [inc_cpython, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, cypari2, gmp], + include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, cypari2, cysignals, givaro, gmp, m, ntl, pari], ) endforeach + +extension_data_cpp = { + 'element_givaro': files('element_givaro.pyx'), + 'element_ntl_gf2e': files('element_ntl_gf2e.pyx'), + 'hom_finite_field_givaro': files('hom_finite_field_givaro.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/rings/finite_rings', install: true, - override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_rings, inc_ext], - dependencies: [py_dep, cysignals, cypari2], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, cypari2, cysignals, givaro, gmp, m, ntl, pari], ) endforeach + diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build index 86be49c5390..954c446bd57 100644 --- a/src/sage/rings/function_field/meson.build +++ b/src/sage/rings/function_field/meson.build @@ -38,8 +38,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/function_field', install: true, - include_directories: [inc_cpython, inc_ntl], - dependencies: [py_dep], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], ) endforeach diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 595aa6a6df4..442800e8eab 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -1,18 +1,6 @@ -mpfi = declare_dependency( +pthread = declare_dependency( dependencies: [ - cc.find_library('mpfi'), - ] -) -gsl = dependency('gsl') -# Cannot be found via pkg-config -arb = declare_dependency( - dependencies: [ - cc.find_library('arb'), - ] -) -mpc = declare_dependency( - dependencies: [ - cc.find_library('mpc'), + cc.find_library('pthread'), ] ) @@ -107,8 +95,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings', install: true, - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings], - dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl, flint, arb, mpc], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, arb, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], ) endforeach @@ -125,8 +113,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/rings', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings, inc_ntl, inc_rings_finite], - dependencies: [py_dep, cysignals, gmpy2, cypari2, mpfi, mpfr, gmp, pari, gsl, flint, arb, mpc, ntl], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, arb, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], ) endforeach diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index b9183257abb..032f1c3321d 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -22,11 +22,6 @@ py.install_sources( subdir: 'sage/rings/number_field', ) -extension_data_cpp = { - 'number_field_element': files('number_field_element.pyx'), - 'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), -} - extension_data = { 'number_field_base': files('number_field_base.pyx'), 'number_field_element_base': files('number_field_element_base.pyx'), @@ -40,17 +35,24 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/number_field', install: true, - include_directories: [inc_cpython, inc_ntl], - dependencies: [py_dep, cysignals, cypari2], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], ) endforeach + +extension_data_cpp = { + 'number_field_element': files('number_field_element.pyx'), + 'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/rings/number_field', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_arb, inc_flint], - dependencies: [py_dep, cysignals, cypari2, ntl, mpfi, arb], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, arb, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], ) endforeach + diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index afd0f50a765..bd69f694ce8 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -21,15 +21,6 @@ py.install_sources( subdir: 'sage/rings/padics', ) -extension_data_cpp = { - 'padic_ZZ_pX_CA_element': files('padic_ZZ_pX_CA_element.pyx'), - 'padic_ZZ_pX_CR_element': files('padic_ZZ_pX_CR_element.pyx'), - 'padic_ZZ_pX_FM_element': files('padic_ZZ_pX_FM_element.pyx'), - 'padic_ZZ_pX_element': files('padic_ZZ_pX_element.pyx'), - 'padic_ext_element': files('padic_ext_element.pyx'), - 'pow_computer': files('pow_computer.pyx'), - 'pow_computer_ext': files('pow_computer_ext.pyx'), -} extension_data = { 'common_conversion': files('common_conversion.pyx'), 'local_generic_element': files('local_generic_element.pyx'), @@ -39,11 +30,8 @@ extension_data = { 'padic_fixed_mod_element': files('padic_fixed_mod_element.pyx'), 'padic_floating_point_element': files('padic_floating_point_element.pyx'), 'padic_generic_element': files('padic_generic_element.pyx'), - 'padic_printing': files('padic_printing.pyx'), - #'padic_relaxed_element': files('padic_relaxed_element.pyx'), - compilation error (needs libs/linkages) + 'padic_relaxed_element': files('padic_relaxed_element.pyx'), 'padic_relaxed_errors': files('padic_relaxed_errors.pyx'), - 'pow_computer_flint': files('pow_computer_flint.pyx'), - 'pow_computer_relative': files('pow_computer_relative.pyx'), 'qadic_flint_CA': files('qadic_flint_CA.pyx'), 'qadic_flint_CR': files('qadic_flint_CR.pyx'), 'qadic_flint_FM': files('qadic_flint_FM.pyx'), @@ -59,17 +47,32 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/padics', install: true, - include_directories: [inc_cpython, inc_ntl, inc_flint, inc_rings_finite, inc_ext], - dependencies: [py_dep, cypari2, cysignals, gmp], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings, inc_rings_finite, inc_src], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, m, ntl], ) endforeach + +extension_data_cpp = { + 'padic_ZZ_pX_CA_element': files('padic_ZZ_pX_CA_element.pyx'), + 'padic_ZZ_pX_CR_element': files('padic_ZZ_pX_CR_element.pyx'), + 'padic_ZZ_pX_FM_element': files('padic_ZZ_pX_FM_element.pyx'), + 'padic_ZZ_pX_element': files('padic_ZZ_pX_element.pyx'), + 'padic_ext_element': files('padic_ext_element.pyx'), + 'padic_printing': files('padic_printing.pyx'), + 'pow_computer': files('pow_computer.pyx'), + 'pow_computer_ext': files('pow_computer_ext.pyx'), + 'pow_computer_flint': files('pow_computer_flint.pyx'), + 'pow_computer_relative': files('pow_computer_relative.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/rings/padics', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_ext], - dependencies: [py_dep, cypari2, cysignals, gmp, ntl], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, m, ntl], ) endforeach + diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index a42fc33d338..e1e9f80dbeb 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -37,16 +37,6 @@ py.install_sources( subdir: 'sage/rings/polynomial', ) -extension_data_cpp = { - 'evaluation_ntl': files('evaluation_ntl.pyx'), - 'multi_polynomial_ideal_libsingular': files('multi_polynomial_ideal_libsingular.pyx'), - 'multi_polynomial_libsingular': files('multi_polynomial_libsingular.pyx'), - 'polynomial_gf2x': files('polynomial_gf2x.pyx'), - 'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), - 'polynomial_integer_dense_ntl': files('polynomial_integer_dense_ntl.pyx'), - 'polynomial_modn_dense_ntl': files('polynomial_modn_dense_ntl.pyx'), - 'polynomial_zz_pex': files('polynomial_zz_pex.pyx'), -} extension_data = { 'commutative_polynomial': files('commutative_polynomial.pyx'), 'cyclotomic': files('cyclotomic.pyx'), @@ -57,16 +47,13 @@ extension_data = { 'multi_polynomial': files('multi_polynomial.pyx'), 'multi_polynomial_ring_base': files('multi_polynomial_ring_base.pyx'), 'ore_polynomial_element': files('ore_polynomial_element.pyx'), - #'plural': files('plural.pyx'), - compile error 'polydict': files('polydict.pyx'), 'polynomial_compiled': files('polynomial_compiled.pyx'), 'polynomial_complex_arb': files('polynomial_complex_arb.pyx'), 'polynomial_element': files('polynomial_element.pyx'), 'polynomial_number_field': files('polynomial_number_field.pyx'), - 'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), 'polynomial_real_mpfr_dense': files('polynomial_real_mpfr_dense.pyx'), 'polynomial_ring_homomorphism': files('polynomial_ring_homomorphism.pyx'), - 'polynomial_zmod_flint': files('polynomial_zmod_flint.pyx'), 'real_roots': files('real_roots.pyx'), 'refine_root': files('refine_root.pyx'), 'skew_polynomial_element': files('skew_polynomial_element.pyx'), @@ -80,19 +67,33 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/polynomial', install: true, - include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings, inc_numpy, inc_ext, inc_arb], - dependencies: [py_dep, cysignals, cypari2, gmp, mpfi, arb, flint], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + dependencies: [py_dep, arb, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], ) endforeach +extension_data_cpp = { + 'evaluation_ntl': files('evaluation_ntl.pyx'), + 'multi_polynomial_ideal_libsingular': files('multi_polynomial_ideal_libsingular.pyx'), + 'multi_polynomial_libsingular': files('multi_polynomial_libsingular.pyx'), + 'plural': files('plural.pyx'), + 'polynomial_gf2x': files('polynomial_gf2x.pyx'), + 'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), + 'polynomial_integer_dense_ntl': files('polynomial_integer_dense_ntl.pyx'), + 'polynomial_modn_dense_ntl': files('polynomial_modn_dense_ntl.pyx'), + 'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), + 'polynomial_zmod_flint': files('polynomial_zmod_flint.pyx'), + 'polynomial_zz_pex': files('polynomial_zz_pex.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/rings/polynomial', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_flint, inc_ntl, inc_rings_finite, inc_ext, inc_arb, inc_rings], - dependencies: [py_dep, cysignals, cypari2, ntl, mpfr, mpfi, arb], + include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + dependencies: [py_dep, arb, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], ) endforeach diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index 25a800888d8..c087b554e01 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -1,3 +1,14 @@ +brial = declare_dependency( + dependencies: [ + cc.find_library('brial', required: false), + ] +) +brial_groebner = declare_dependency( + dependencies: [ + cc.find_library('brial-groebner', required: false), + ] +) + py.install_sources( 'PyPolyBoRi.py', '__init__.py', @@ -25,19 +36,14 @@ extension_data_cpp = { 'pbori': files('pbori.pyx'), } -brial = declare_dependency( - dependencies: [ - cc.find_library('brial', required: false), - ] -) - foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/rings/polynomial/pbori', install: true, - include_directories: [inc_src, inc_cpython, inc_ext], - override_options: ['cython_language=cpp'], - dependencies: [py_dep, cysignals, brial], + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], + dependencies: [py_dep, brial, brial_groebner, cysignals, gmp, m4ri, png], ) endforeach + diff --git a/src/sage/rings/polynomial/weil/meson.build b/src/sage/rings/polynomial/weil/meson.build index f4d65307c3a..ad617697b46 100644 --- a/src/sage/rings/polynomial/weil/meson.build +++ b/src/sage/rings/polynomial/weil/meson.build @@ -12,7 +12,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/polynomial/weil', install: true, - include_directories: [inc_flint, inc_src, inc_cpython], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_flint, inc_rings, inc_src], + dependencies: [py_dep, cysignals, flint, gmp], ) endforeach + diff --git a/src/sage/rings/semirings/meson.build b/src/sage/rings/semirings/meson.build index 0180e4c3059..564c23df0e5 100644 --- a/src/sage/rings/semirings/meson.build +++ b/src/sage/rings/semirings/meson.build @@ -13,7 +13,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/semirings', install: true, - include_directories: [inc_cpython], - dependencies: [py_dep], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], ) endforeach + diff --git a/src/sage/schemes/all.py b/src/sage/schemes/all.py index 23858c6f0c8..d819c224e5d 100644 --- a/src/sage/schemes/all.py +++ b/src/sage/schemes/all.py @@ -22,13 +22,15 @@ from .jacobians.all import * -from .hyperelliptic_curves.all import * +# Runtime error +#from .hyperelliptic_curves.all import * from .curves.all import * from .plane_conics.all import * -from .elliptic_curves.all import * +# Runtime error +#from .elliptic_curves.all import * from .plane_quartics.all import * @@ -42,6 +44,7 @@ from .product_projective.all import * -from .cyclic_covers.all import * +# Runtime error +#from .cyclic_covers.all import * from .berkovich.all import * diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build new file mode 100644 index 00000000000..dfed2dd7368 --- /dev/null +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -0,0 +1,67 @@ +py.install_sources( + 'BSD.py', + 'Qcurves.py', + 'all.py', + 'cardinality.py', + 'cm.py', + 'constructor.py', + 'ec_database.py', + 'ell_curve_isogeny.py', + 'ell_egros.py', + 'ell_field.py', + 'ell_finite_field.py', + 'ell_generic.py', + 'ell_local_data.py', + 'ell_modular_symbols.py', + 'ell_number_field.py', + 'ell_padic_field.py', + 'ell_point.py', + 'ell_rational_field.py', + 'ell_tate_curve.py', + 'ell_torsion.py', + 'ell_wp.py', + 'formal_group.py', + 'gal_reps.py', + 'gal_reps_number_field.py', + 'gp_simon.py', + 'heegner.py', + 'height.py', + 'hom.py', + 'hom_composite.py', + 'hom_frobenius.py', + 'hom_scalar.py', + 'hom_velusqrt.py', + 'isogeny_class.py', + 'isogeny_small_degree.py', + 'jacobian.py', + 'kodaira_symbol.py', + 'kraus.py', + 'lseries_ell.py', + 'mod5family.py', + 'modular_parametrization.py', + 'padic_lseries.py', + 'padics.py', + 'period_lattice.py', + 'saturation.py', + 'sha_tate.py', + 'weierstrass_morphism.py', + 'weierstrass_transform.py', + subdir: 'sage/schemes/elliptic_curves', +) + +extension_data = { + 'descent_two_isogeny': files('descent_two_isogeny.pyx'), + 'mod_sym_num': files('mod_sym_num.pyx'), + 'period_lattice_region': files('period_lattice_region.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/schemes/elliptic_curves', + install: true, + include_directories: [inc_cpython, inc_flint, inc_numpy, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr], + ) +endforeach + diff --git a/src/sage/schemes/hyperelliptic_curves/meson.build b/src/sage/schemes/hyperelliptic_curves/meson.build new file mode 100644 index 00000000000..b64793152ec --- /dev/null +++ b/src/sage/schemes/hyperelliptic_curves/meson.build @@ -0,0 +1,36 @@ +inc_hypellfrob = include_directories('hypellfrob') +py.install_sources( + 'all.py', + 'constructor.py', + 'hyperelliptic_finite_field.py', + 'hyperelliptic_g2.py', + 'hyperelliptic_generic.py', + 'hyperelliptic_padic_field.py', + 'hyperelliptic_rational_field.py', + 'invariants.py', + 'jacobian_endomorphism_utils.py', + 'jacobian_g2.py', + 'jacobian_generic.py', + 'jacobian_homset.py', + 'jacobian_morphism.py', + 'kummer_surface.py', + 'mestre.py', + 'monsky_washnitzer.py', + subdir: 'sage/schemes/hyperelliptic_curves', +) + +extension_data_cpp = { + 'hypellfrob': files('hypellfrob.pyx'), +} + +foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/schemes/hyperelliptic_curves', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite, inc_hypellfrob], + dependencies: [py_dep, cysignals, gmp, ntl], + ) +endforeach + diff --git a/src/sage/schemes/meson.build b/src/sage/schemes/meson.build new file mode 100644 index 00000000000..6ef40ff5257 --- /dev/null +++ b/src/sage/schemes/meson.build @@ -0,0 +1,20 @@ +py.install_sources( + 'all.py', + 'overview.py', + subdir: 'sage/schemes', +) + +install_subdir('affine', install_dir: sage_install_dir / 'schemes') +install_subdir('berkovich', install_dir: sage_install_dir / 'schemes') +install_subdir('curves', install_dir: sage_install_dir / 'schemes') +install_subdir('cyclic_covers', install_dir: sage_install_dir / 'schemes') +subdir('elliptic_curves') +install_subdir('generic', install_dir: sage_install_dir / 'schemes') +subdir('hyperelliptic_curves') +install_subdir('jacobians', install_dir: sage_install_dir / 'schemes') +install_subdir('plane_conics', install_dir: sage_install_dir / 'schemes') +install_subdir('plane_quartics', install_dir: sage_install_dir / 'schemes') +install_subdir('product_projective', install_dir: sage_install_dir / 'schemes') +install_subdir('projective', install_dir: sage_install_dir / 'schemes') +install_subdir('riemann_surfaces', install_dir: sage_install_dir / 'schemes') +subdir('toric') diff --git a/src/sage/schemes/toric/meson.build b/src/sage/schemes/toric/meson.build new file mode 100644 index 00000000000..36e4b8fd991 --- /dev/null +++ b/src/sage/schemes/toric/meson.build @@ -0,0 +1,33 @@ +py.install_sources( + 'all.py', + 'chow_group.py', + 'divisor.py', + 'fano_variety.py', + 'homset.py', + 'ideal.py', + 'library.py', + 'morphism.py', + 'points.py', + 'toric_subscheme.py', + 'variety.py', + 'weierstrass.py', + 'weierstrass_covering.py', + 'weierstrass_higher.py', + subdir: 'sage/schemes/toric', +) + +extension_data = { + 'divisor_class': files('divisor_class.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/schemes/toric', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) +endforeach + +install_subdir('sheaf', install_dir: sage_install_dir / 'schemes/toric') diff --git a/src/sage/sets/meson.build b/src/sage/sets/meson.build index 734754d05b6..bf7a80d39bf 100644 --- a/src/sage/sets/meson.build +++ b/src/sage/sets/meson.build @@ -20,7 +20,7 @@ py.install_sources( ) extension_data = { - #'disjoint_set': files('disjoint_set.pyx'), Needs other imports + 'disjoint_set': files('disjoint_set.pyx'), 'finite_set_map_cy': files('finite_set_map_cy.pyx'), 'pythonclass': files('pythonclass.pyx'), 'recursively_enumerated_set': files('recursively_enumerated_set.pyx'), @@ -31,7 +31,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/sets', install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, gmp], ) endforeach + diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build new file mode 100644 index 00000000000..1eb9d97f24f --- /dev/null +++ b/src/sage/stats/distributions/meson.build @@ -0,0 +1,21 @@ +py.install_sources( + 'all.py', + 'discrete_gaussian_lattice.py', + 'discrete_gaussian_polynomial.py', + subdir: 'sage/stats/distributions', +) + +extension_data = { + 'discrete_gaussian_integer': files('discrete_gaussian_integer.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/stats/distributions', + install: true, + include_directories: [inc_cpython, inc_rings, inc_src], + dependencies: [py_dep, cypari2, cysignals, gmp, mpfr], + ) +endforeach + diff --git a/src/sage/stats/hmm/meson.build b/src/sage/stats/hmm/meson.build new file mode 100644 index 00000000000..d9aefe474aa --- /dev/null +++ b/src/sage/stats/hmm/meson.build @@ -0,0 +1,22 @@ +py.install_sources( + 'all.py', + subdir: 'sage/stats/hmm', +) + +extension_data = { + 'chmm': files('chmm.pyx'), + 'distributions': files('distributions.pyx'), + 'hmm': files('hmm.pyx'), + 'util': files('util.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/stats/hmm', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build new file mode 100644 index 00000000000..341048d7f5e --- /dev/null +++ b/src/sage/stats/meson.build @@ -0,0 +1,24 @@ +py.install_sources( + 'all.py', + 'basic_stats.py', + 'r.py', + subdir: 'sage/stats', +) + +extension_data = { + 'intlist': files('intlist.pyx'), + 'time_series': files('time_series.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/stats', + install: true, + include_directories: [inc_cpython, inc_numpy], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + +subdir('distributions') +subdir('hmm') diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index dfd0c074ed9..280b6743e42 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -20,7 +20,6 @@ py.install_sources( 'unique_representation.py', subdir: 'sage/structure', ) -install_subdir('proof', install_dir: sage_install_dir / 'structure') extension_data = { 'category_object': files('category_object.pyx'), @@ -49,7 +48,9 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/structure', install: true, - include_directories: [inc_cpython, inc_rings, inc_src], - dependencies: [py_dep, gmpy2, cysignals, gmp], + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, gmp, gmpy2, mpc, mpfr], ) endforeach + +install_subdir('proof', install_dir: sage_install_dir / 'structure') diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index c60742ad285..3c5800390ce 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -9,8 +9,11 @@ ginac = declare_dependency( cc.find_library('ginac', required: false), ], ) +inc_ginac = include_directories('ginac') +inc_pynac = include_directories('.') py.install_sources( + '__init__.py', 'all.py', 'assumptions.py', 'benchmark.py', @@ -38,15 +41,13 @@ extension_data = { 'ring': files('ring.pyx'), } -inc_ginac = include_directories('ginac') - foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/symbolic', install: true, - include_directories: [inc_cpython, inc_rings, inc_ginac], - dependencies: [py_dep, cysignals, flint, gmp, singular], + include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, ginac, gmp, gsl, mpfr, pari, singular], ) endforeach @@ -59,10 +60,9 @@ foreach name, pyx : extension_data_cpp sources: pyx, subdir: 'sage/symbolic', install: true, - cython_args: ['-I', inc_numpy], override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_rings, inc_ext, inc_ginac], - dependencies: [py_dep, cysignals, flint, gmp, singular, cypari2, ginac], + include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, ginac, gmp, gsl, mpfr, pari, singular], ) endforeach diff --git a/src/sage/tests/meson.build b/src/sage/tests/meson.build index 928e1666f71..d4355a4a7be 100644 --- a/src/sage/tests/meson.build +++ b/src/sage/tests/meson.build @@ -24,31 +24,34 @@ py.install_sources( subdir: 'sage/tests', ) -install_subdir('books', install_dir: sage_install_dir / 'tests') -install_subdir('memcheck', install_dir: sage_install_dir / 'tests') - extension_data = { 'cython': files('cython.pyx'), } -extension_data_cpp = { - 'stl_vector': files('stl_vector.pyx'), -} foreach name, pyx : extension_data py.extension_module(name, sources: pyx, subdir: 'sage/tests', install: true, - dependencies: [py_dep], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach + +extension_data_cpp = { + 'stl_vector': files('stl_vector.pyx'), +} + foreach name, pyx : extension_data_cpp py.extension_module(name, sources: pyx, subdir: 'sage/tests', install: true, - include_directories: [inc_cpython], override_options : ['cython_language=cpp'], - dependencies: [py_dep, cysignals], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach + +install_subdir('books', install_dir: sage_install_dir / 'tests') +install_subdir('memcheck', install_dir: sage_install_dir / 'tests') From 9db105ffce10d28b4596484cfbc97a68369230ac Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 2 Nov 2023 18:23:19 +0000 Subject: [PATCH 034/229] Last set of relative imports --- src/sage/cpython/debug.pyx | 2 +- src/sage/matroids/basis_exchange_matroid.pxd | 4 +-- src/sage/matroids/basis_exchange_matroid.pyx | 8 ++--- src/sage/matroids/basis_matroid.pxd | 6 ++-- src/sage/matroids/basis_matroid.pyx | 6 ++-- .../matroids/circuit_closures_matroid.pxd | 2 +- .../matroids/circuit_closures_matroid.pyx | 6 ++-- src/sage/matroids/extension.pxd | 2 +- src/sage/matroids/extension.pyx | 2 +- src/sage/matroids/linear_matroid.pxd | 6 ++-- src/sage/matroids/matroid.pyx | 30 +++++++++---------- src/sage/matroids/union_matroid.pxd | 2 +- src/sage/matroids/union_matroid.pyx | 2 +- src/sage/matroids/unpickling.pyx | 14 ++++----- src/sage/modular/modsym/heilbronn.pyx | 4 +-- .../discrete_gaussian_integer.pxd | 2 +- .../discrete_gaussian_integer.pyx | 6 ++-- src/sage/stats/hmm/chmm.pyx | 6 ++-- src/sage/stats/hmm/hmm.pyx | 2 +- src/sage/structure/coerce_dict.pyx | 2 +- 20 files changed, 57 insertions(+), 57 deletions(-) diff --git a/src/sage/cpython/debug.pyx b/src/sage/cpython/debug.pyx index 0cfc1fc2388..09680986673 100644 --- a/src/sage/cpython/debug.pyx +++ b/src/sage/cpython/debug.pyx @@ -18,7 +18,7 @@ cdef extern from "Python.h": # Helper to get a pointer to an object's __dict__ slot, if any PyObject** _PyObject_GetDictPtr(obj) -cdef extern from "sage/cpython/debugimpl.c": +cdef extern from "debugimpl.c": void _type_debug(PyTypeObject*) from sage.cpython.getattr cimport AttributeErrorMessage diff --git a/src/sage/matroids/basis_exchange_matroid.pxd b/src/sage/matroids/basis_exchange_matroid.pxd index b762fd9ed9d..5877f62fc09 100644 --- a/src/sage/matroids/basis_exchange_matroid.pxd +++ b/src/sage/matroids/basis_exchange_matroid.pxd @@ -1,8 +1,8 @@ from sage.data_structures.bitset cimport * from sage.data_structures.bitset_base cimport bitset_t, bitset_s -from .matroid cimport Matroid -from .set_system cimport SetSystem +from sage.matroids.matroid cimport Matroid +from sage.matroids.set_system cimport SetSystem cdef class BasisExchangeMatroid(Matroid): cdef long _groundset_size, _matroid_rank, _bitset_size diff --git a/src/sage/matroids/basis_exchange_matroid.pyx b/src/sage/matroids/basis_exchange_matroid.pyx index c27a8cba33d..e5c18e0185b 100644 --- a/src/sage/matroids/basis_exchange_matroid.pyx +++ b/src/sage/matroids/basis_exchange_matroid.pyx @@ -38,8 +38,8 @@ Methods # https://www.gnu.org/licenses/ # **************************************************************************** -from .matroid cimport Matroid -from .set_system cimport SetSystem +from sage.matroids.matroid cimport Matroid +from sage.matroids.set_system cimport SetSystem from sage.data_structures.bitset_base cimport * @@ -2151,7 +2151,7 @@ cdef class BasisExchangeMatroid(Matroid): True """ if not isinstance(other, BasisExchangeMatroid): - from .basis_matroid import BasisMatroid + from sage.matroids.basis_matroid import BasisMatroid ot = BasisMatroid(other) else: ot = other @@ -2217,7 +2217,7 @@ cdef class BasisExchangeMatroid(Matroid): True """ if not isinstance(other, BasisExchangeMatroid): - from .basis_matroid import BasisMatroid + from sage.matroids.basis_matroid import BasisMatroid other = BasisMatroid(other) if self is other: return {e:e for e in self.groundset()} diff --git a/src/sage/matroids/basis_matroid.pxd b/src/sage/matroids/basis_matroid.pxd index a4202bfedac..aeb59fdb66f 100644 --- a/src/sage/matroids/basis_matroid.pxd +++ b/src/sage/matroids/basis_matroid.pxd @@ -1,7 +1,7 @@ from sage.data_structures.bitset cimport bitset_t -from .matroid cimport Matroid -from .basis_exchange_matroid cimport BasisExchangeMatroid -from .set_system cimport SetSystem +from sage.matroids.matroid cimport Matroid +from sage.matroids.basis_exchange_matroid cimport BasisExchangeMatroid +from sage.matroids.set_system cimport SetSystem cdef class BasisMatroid(BasisExchangeMatroid): cdef bitset_t _bb diff --git a/src/sage/matroids/basis_matroid.pyx b/src/sage/matroids/basis_matroid.pyx index 93cf56ec60c..0610c9a1149 100644 --- a/src/sage/matroids/basis_matroid.pyx +++ b/src/sage/matroids/basis_matroid.pyx @@ -74,9 +74,9 @@ Methods from sage.data_structures.bitset_base cimport * from sage.structure.richcmp cimport rich_to_bool -from .matroid cimport Matroid -from .basis_exchange_matroid cimport BasisExchangeMatroid -from .set_system cimport SetSystem +from sage.matroids.matroid cimport Matroid +from sage.matroids.basis_exchange_matroid cimport BasisExchangeMatroid +from sage.matroids.set_system cimport SetSystem from cpython.object cimport Py_EQ, Py_NE from itertools import combinations diff --git a/src/sage/matroids/circuit_closures_matroid.pxd b/src/sage/matroids/circuit_closures_matroid.pxd index 1ec965db0fe..09225917171 100644 --- a/src/sage/matroids/circuit_closures_matroid.pxd +++ b/src/sage/matroids/circuit_closures_matroid.pxd @@ -1,4 +1,4 @@ -from .matroid cimport Matroid +from sage.matroids.matroid cimport Matroid cdef class CircuitClosuresMatroid(Matroid): cdef frozenset _groundset # _E diff --git a/src/sage/matroids/circuit_closures_matroid.pyx b/src/sage/matroids/circuit_closures_matroid.pyx index 1fc11f0c344..0a25aee80cb 100644 --- a/src/sage/matroids/circuit_closures_matroid.pyx +++ b/src/sage/matroids/circuit_closures_matroid.pyx @@ -67,9 +67,9 @@ Methods # **************************************************************************** from sage.structure.richcmp cimport rich_to_bool, richcmp -from .matroid cimport Matroid -from .set_system cimport SetSystem -from .utilities import setprint_s +from sage.matroids.matroid cimport Matroid +from sage.matroids.set_system cimport SetSystem +from sage.matroids.utilities import setprint_s from cpython.object cimport Py_EQ, Py_NE diff --git a/src/sage/matroids/extension.pxd b/src/sage/matroids/extension.pxd index 34d813eeb7c..6b6d7949794 100644 --- a/src/sage/matroids/extension.pxd +++ b/src/sage/matroids/extension.pxd @@ -1,5 +1,5 @@ from sage.data_structures.bitset cimport bitset_t -from .basis_matroid cimport BasisMatroid +from sage.matroids.basis_matroid cimport BasisMatroid cdef class CutNode: cdef LinearSubclasses _MC diff --git a/src/sage/matroids/extension.pyx b/src/sage/matroids/extension.pyx index 061ba37089e..553869fcf66 100644 --- a/src/sage/matroids/extension.pyx +++ b/src/sage/matroids/extension.pyx @@ -30,7 +30,7 @@ Methods # **************************************************************************** from sage.data_structures.bitset_base cimport * -from .basis_matroid cimport BasisMatroid +from sage.matroids.basis_matroid cimport BasisMatroid cdef class CutNode: diff --git a/src/sage/matroids/linear_matroid.pxd b/src/sage/matroids/linear_matroid.pxd index 663886fa58e..c7e6a402494 100644 --- a/src/sage/matroids/linear_matroid.pxd +++ b/src/sage/matroids/linear_matroid.pxd @@ -1,8 +1,8 @@ from sage.data_structures.bitset cimport bitset_t -from .matroid cimport Matroid -from .basis_exchange_matroid cimport BasisExchangeMatroid -from .lean_matrix cimport LeanMatrix, GenericMatrix, BinaryMatrix, TernaryMatrix, QuaternaryMatrix +from sage.matroids.matroid cimport Matroid +from sage.matroids.basis_exchange_matroid cimport BasisExchangeMatroid +from sage.matroids.lean_matrix cimport LeanMatrix, GenericMatrix, BinaryMatrix, TernaryMatrix, QuaternaryMatrix cdef class LinearMatroid(BasisExchangeMatroid): diff --git a/src/sage/matroids/matroid.pyx b/src/sage/matroids/matroid.pyx index 51692e8f1c1..ed971cb8349 100644 --- a/src/sage/matroids/matroid.pyx +++ b/src/sage/matroids/matroid.pyx @@ -344,9 +344,9 @@ from sage.structure.sage_object cimport SageObject MixedIntegerLinearProgram = LazyImport('sage.numerical.mip', 'MixedIntegerLinearProgram') -from .lean_matrix cimport BinaryMatrix, TernaryMatrix -from .set_system cimport SetSystem -from .utilities import newlabel, sanitize_contractions_deletions, spanning_forest, spanning_stars +from sage.matroids.lean_matrix cimport BinaryMatrix, TernaryMatrix +from sage.matroids.set_system cimport SetSystem +from sage.matroids.utilities import newlabel, sanitize_contractions_deletions, spanning_forest, spanning_stars # On some systems, macros "minor()" and "major()" are defined in system header @@ -1113,7 +1113,7 @@ cdef class Matroid(SageObject): {'e', 'f', 'g', 'h'}}, 4: {{'a', 'b', 'c', 'd', 'e', 'f', 'g', 'h'}}} """ - from . import minor_matroid + from sage.matroids import minor_matroid return minor_matroid.MinorMatroid(self, contractions, deletions) cpdef _has_minor(self, N, bint certificate=False) noexcept: @@ -1226,7 +1226,7 @@ cdef class Matroid(SageObject): sage: [sorted(C) for C in N.circuits() if len(C) == 3] [[0, 1, 6]] """ - from . import basis_matroid + from sage.matroids import basis_matroid return basis_matroid.BasisMatroid(self)._extension(element, hyperplanes) # ** user-facing methods ** @@ -3610,8 +3610,8 @@ cdef class Matroid(SageObject): sage: M._is_isomorphism(N, morphism) True """ - from . import basis_exchange_matroid - from . import basis_matroid + from sage.matroids import basis_exchange_matroid + from sage.matroids import basis_matroid sf = basis_matroid.BasisMatroid(self) if not isinstance(other, basis_exchange_matroid.BasisExchangeMatroid): ot = basis_matroid.BasisMatroid(other) @@ -3694,7 +3694,7 @@ cdef class Matroid(SageObject): return rich_to_bool(op, 1) # Default implementation: use BasisMatroid - from .basis_matroid import BasisMatroid + from sage.matroids.basis_matroid import BasisMatroid return richcmp(BasisMatroid(left), BasisMatroid(right), op) # Minors and duality @@ -4009,7 +4009,7 @@ cdef class Matroid(SageObject): {'c', 'e', 'g'}, {'d', 'e', 'f'}, {'g', 'h', 'i'}}, 3: {{'a', 'b', 'c', 'd', 'e', 'f', 'g', 'h', 'i'}}}' """ - from . import dual_matroid + from sage.matroids import dual_matroid return dual_matroid.DualMatroid(self) cpdef truncation(self) noexcept: @@ -4505,7 +4505,7 @@ cdef class Matroid(SageObject): sage: len(list(M.linear_subclasses(line_length=5))) 44 """ - from . import extension + from sage.matroids import extension return extension.LinearSubclasses(self, line_length=line_length, subsets=subsets) cpdef extensions(self, element=None, line_length=None, subsets=None) noexcept: @@ -4564,7 +4564,7 @@ cdef class Matroid(SageObject): 5 """ - from . import extension + from sage.matroids import extension if element is None: element = newlabel(self.groundset()) else: @@ -7773,7 +7773,7 @@ cdef class Matroid(SageObject): sage: G.show() # needs sage.plot sage.rings.finite_rings """ - from . import matroids_plot_helpers + from sage.matroids import matroids_plot_helpers if pos_method == 1 and pos_dict is not None: # check sanity of pos_dict and add it to cached info if sane if matroids_plot_helpers.posdict_is_sane(self, pos_dict): @@ -7882,7 +7882,7 @@ cdef class Matroid(SageObject): raise NotImplementedError # check sanity of pos_dict and add it to cached info if sane if pos_dict is not None: - from . import matroids_plot_helpers + from sage.matroids import matroids_plot_helpers if matroids_plot_helpers.posdict_is_sane(self,pos_dict): self._cached_info = {'plot_positions': pos_dict, 'lineorders': lineorders} return @@ -8066,7 +8066,7 @@ cdef class Matroid(SageObject): Binary matroid of rank 3 on 7 elements, type (3, 0) Ternary matroid of rank 3 on 7 elements, type 0- """ - from . import union_matroid + from sage.matroids import union_matroid if isinstance(matroids, Matroid): matroids = [matroids] else: @@ -8116,7 +8116,7 @@ cdef class Matroid(SageObject): sage: len(N.bases()) 2100 """ - from . import union_matroid + from sage.matroids import union_matroid if isinstance(matroids, Matroid): matroids = [matroids] else: diff --git a/src/sage/matroids/union_matroid.pxd b/src/sage/matroids/union_matroid.pxd index 6e3a6e8d96e..f77b4f8a888 100644 --- a/src/sage/matroids/union_matroid.pxd +++ b/src/sage/matroids/union_matroid.pxd @@ -1,4 +1,4 @@ -from .matroid cimport Matroid +from sage.matroids.matroid cimport Matroid cdef class MatroidUnion(Matroid): cdef list matroids diff --git a/src/sage/matroids/union_matroid.pyx b/src/sage/matroids/union_matroid.pyx index 802b8d609f4..bb3dd03a082 100644 --- a/src/sage/matroids/union_matroid.pyx +++ b/src/sage/matroids/union_matroid.pyx @@ -1,5 +1,5 @@ -from .matroid cimport Matroid +from sage.matroids.matroid cimport Matroid cdef class MatroidUnion(Matroid): diff --git a/src/sage/matroids/unpickling.pyx b/src/sage/matroids/unpickling.pyx index 94464ecb9f0..77b3f12265c 100644 --- a/src/sage/matroids/unpickling.pyx +++ b/src/sage/matroids/unpickling.pyx @@ -28,13 +28,13 @@ AUTHORS: from sage.data_structures.bitset_base cimport * import sage.matroids.matroid import sage.matroids.basis_exchange_matroid -from .minor_matroid import MinorMatroid -from .dual_matroid import DualMatroid -from .circuit_closures_matroid cimport CircuitClosuresMatroid -from .basis_matroid cimport BasisMatroid -from .linear_matroid cimport LinearMatroid, RegularMatroid, BinaryMatroid, TernaryMatroid, QuaternaryMatroid -from .lean_matrix cimport GenericMatrix, BinaryMatrix, TernaryMatrix, QuaternaryMatrix, PlusMinusOneMatrix, RationalMatrix -from .graphic_matroid import GraphicMatroid +from sage.matroids.minor_matroid import MinorMatroid +from sage.matroids.dual_matroid import DualMatroid +from sage.matroids.circuit_closures_matroid cimport CircuitClosuresMatroid +from sage.matroids.basis_matroid cimport BasisMatroid +from sage.matroids.linear_matroid cimport LinearMatroid, RegularMatroid, BinaryMatroid, TernaryMatroid, QuaternaryMatroid +from sage.matroids.lean_matrix cimport GenericMatrix, BinaryMatrix, TernaryMatrix, QuaternaryMatrix, PlusMinusOneMatrix, RationalMatrix +from sage.matroids.graphic_matroid import GraphicMatroid from sage.rings.rational cimport Rational from sage.libs.gmp.mpq cimport mpq_set diff --git a/src/sage/modular/modsym/heilbronn.pyx b/src/sage/modular/modsym/heilbronn.pyx index ba42d70aa9e..7fc8ed28055 100644 --- a/src/sage/modular/modsym/heilbronn.pyx +++ b/src/sage/modular/modsym/heilbronn.pyx @@ -34,11 +34,11 @@ cdef extern from "": float roundf(float x) cimport sage.modular.modsym.p1list as p1list -from . import p1list +from sage.modular.modsym import p1list cdef p1list.export export export = p1list.export() -from .apply cimport Apply +from sage.modular.modsym.apply cimport Apply cdef Apply PolyApply= Apply() from sage.matrix.matrix_rational_dense cimport Matrix_rational_dense diff --git a/src/sage/stats/distributions/discrete_gaussian_integer.pxd b/src/sage/stats/distributions/discrete_gaussian_integer.pxd index 7235a9397f7..faf66b2e595 100644 --- a/src/sage/stats/distributions/discrete_gaussian_integer.pxd +++ b/src/sage/stats/distributions/discrete_gaussian_integer.pxd @@ -1,4 +1,4 @@ -from .dgs cimport dgs_disc_gauss_mp_t, dgs_disc_gauss_dp_t +from sage.stats.distributions.dgs cimport dgs_disc_gauss_mp_t, dgs_disc_gauss_dp_t from sage.structure.sage_object cimport SageObject from sage.rings.real_mpfr cimport RealNumber diff --git a/src/sage/stats/distributions/discrete_gaussian_integer.pyx b/src/sage/stats/distributions/discrete_gaussian_integer.pyx index 2aa28609180..6d50074102b 100644 --- a/src/sage/stats/distributions/discrete_gaussian_integer.pyx +++ b/src/sage/stats/distributions/discrete_gaussian_integer.pyx @@ -148,9 +148,9 @@ from sage.libs.mpfr cimport mpfr_set, MPFR_RNDN from sage.rings.integer cimport Integer from sage.misc.randstate cimport randstate, current_randstate -from .dgs cimport dgs_disc_gauss_mp_init, dgs_disc_gauss_mp_clear, dgs_disc_gauss_mp_flush_cache -from .dgs cimport dgs_disc_gauss_dp_init, dgs_disc_gauss_dp_clear, dgs_disc_gauss_dp_flush_cache -from .dgs cimport DGS_DISC_GAUSS_UNIFORM_TABLE, DGS_DISC_GAUSS_UNIFORM_ONLINE, DGS_DISC_GAUSS_UNIFORM_LOGTABLE, DGS_DISC_GAUSS_SIGMA2_LOGTABLE +from sage.stats.distributions.dgs cimport dgs_disc_gauss_mp_init, dgs_disc_gauss_mp_clear, dgs_disc_gauss_mp_flush_cache +from sage.stats.distributions.dgs cimport dgs_disc_gauss_dp_init, dgs_disc_gauss_dp_clear, dgs_disc_gauss_dp_flush_cache +from sage.stats.distributions.dgs cimport DGS_DISC_GAUSS_UNIFORM_TABLE, DGS_DISC_GAUSS_UNIFORM_ONLINE, DGS_DISC_GAUSS_UNIFORM_LOGTABLE, DGS_DISC_GAUSS_SIGMA2_LOGTABLE cdef class DiscreteGaussianDistributionIntegerSampler(SageObject): r""" diff --git a/src/sage/stats/hmm/chmm.pyx b/src/sage/stats/hmm/chmm.pyx index aa35b8cefdc..fe09b3f9cfb 100644 --- a/src/sage/stats/hmm/chmm.pyx +++ b/src/sage/stats/hmm/chmm.pyx @@ -28,9 +28,9 @@ from sage.structure.element import is_Matrix from sage.stats.time_series cimport TimeSeries from sage.stats.intlist cimport IntList -from .hmm cimport HiddenMarkovModel -from .util cimport HMM_Util -from .distributions cimport GaussianMixtureDistribution +from sage.stats.hmm.hmm cimport HiddenMarkovModel +from sage.stats.hmm.util cimport HMM_Util +from sage.stats.hmm.distributions cimport GaussianMixtureDistribution cdef HMM_Util util = HMM_Util() diff --git a/src/sage/stats/hmm/hmm.pyx b/src/sage/stats/hmm/hmm.pyx index 86de50cc1a3..fe8ab69cc66 100644 --- a/src/sage/stats/hmm/hmm.pyx +++ b/src/sage/stats/hmm/hmm.pyx @@ -41,7 +41,7 @@ from sage.matrix.constructor import matrix from sage.misc.randstate cimport current_randstate, randstate from cpython.object cimport PyObject_RichCompare -from .util cimport HMM_Util +from sage.stats.hmm.util cimport HMM_Util cdef HMM_Util util = HMM_Util() diff --git a/src/sage/structure/coerce_dict.pyx b/src/sage/structure/coerce_dict.pyx index 269f1be5fd5..8bfb1f9f030 100644 --- a/src/sage/structure/coerce_dict.pyx +++ b/src/sage/structure/coerce_dict.pyx @@ -73,7 +73,7 @@ from cysignals.memory cimport check_calloc, sig_free cdef extern from "Python.h": void PyTuple_SET_ITEM(object tuple, Py_ssize_t index, PyObject* item) -cdef extern from "sage/cpython/pyx_visit.h": +cdef extern from "pyx_visit.h": void Py_VISIT3(PyObject*, visitproc, void*) cdef type KeyedRef, ref From d3aaee75458895ad8fdca45a2c96b5ebf168cc28 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 3 Nov 2023 01:39:35 +0000 Subject: [PATCH 035/229] cleanup --- meson.build | 2 +- src/meson.build | 3 +- src/sage/ext/meson.build | 2 +- src/sage/graphs/__init__.py | 1 + src/sage/graphs/base/__init__.py | 1 + src/sage/graphs/base/meson.build | 2 +- .../graphs/graph_decompositions/__init__.py | 1 + .../graphs/graph_decompositions/meson.build | 23 ++++---- src/sage/graphs/meson.build | 49 +++++++---------- src/sage/groups/__init__.py | 1 + src/sage/groups/perm_gps/__init__.py | 1 + src/sage/groups/perm_gps/meson.build | 2 +- .../groups/perm_gps/partn_ref/__init__.py | 1 + src/sage/libs/__init__.py | 0 src/sage/libs/gap/__init__.py | 0 src/sage/libs/gap/meson.build | 2 +- src/sage/symbolic/meson.build | 54 ++++++++++++++++++- 17 files changed, 95 insertions(+), 50 deletions(-) create mode 100644 src/sage/graphs/__init__.py create mode 100644 src/sage/graphs/base/__init__.py create mode 100644 src/sage/graphs/graph_decompositions/__init__.py create mode 100644 src/sage/groups/__init__.py create mode 100644 src/sage/groups/perm_gps/__init__.py create mode 100644 src/sage/groups/perm_gps/partn_ref/__init__.py create mode 100644 src/sage/libs/__init__.py create mode 100644 src/sage/libs/gap/__init__.py diff --git a/meson.build b/meson.build index b1c16df6459..3a4723d21ac 100644 --- a/meson.build +++ b/meson.build @@ -32,7 +32,7 @@ conf_data.set('SAGE_KENZO_FAS', '\'${prefix}\'/lib/ecl/kenzo.fas') conf_data.set('SAGE_ARB_LIBRARY', 'arb') -#ntl = dependency('ntl', required: true) doesn't work, so ask the compiler directly: +# Cannot be found via pkg-config ntl = cc.find_library('ntl', required: true) # It can be found, so we don't have to set anything here: conf_data.set('NTL_INCDIR', '') diff --git a/src/meson.build b/src/meson.build index 4d880e5fb45..6d6d59cca0f 100644 --- a/src/meson.build +++ b/src/meson.build @@ -214,6 +214,8 @@ mpc = declare_dependency( cc.find_library('mpc'), ] ) +# Cannot be found via pkg-config +gap = cc.find_library('gap') # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path @@ -233,7 +235,6 @@ add_project_arguments('-I', inc_cython + 'Includes', language : 'cython') # have to add them manually. # https://github.com/mesonbuild/meson/issues/9562 add_project_arguments('-I', meson.current_source_dir(), language : 'cython') -#add_project_arguments('-I', py.get_path('include'), language : 'cython') # Add global compiler flags add_project_arguments('-X auto_pickle=False', language : 'cython') diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 7f7aadedad5..58c8087dce7 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -30,7 +30,7 @@ interpreters = custom_target( # command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..'], install: true, - install_dir: 'interpreters' + install_dir: sage_install_dir / 'ext' / 'interpreters' ) subdir('interpreters') diff --git a/src/sage/graphs/__init__.py b/src/sage/graphs/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/base/__init__.py b/src/sage/graphs/base/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/base/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index 9d8f61a95f2..55052e6d545 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -25,7 +25,7 @@ endforeach extension_data_cpp = { 'boost_graph': files('boost_graph.pyx'), 'c_graph': files('c_graph.pyx'), - # 'static_sparse_graph': files('static_sparse_graph.pyx'), # compilation error + 'static_sparse_graph': files('static_sparse_graph.pyx'), } foreach name, pyx : extension_data_cpp diff --git a/src/sage/graphs/graph_decompositions/__init__.py b/src/sage/graphs/graph_decompositions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/graph_decompositions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 25dd8703c57..6ed735ca46d 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -1,8 +1,4 @@ -tdlib = declare_dependency( - dependencies: [ - cc.find_library('tdlib', required: false), - ] -) +tdlib = cc.find_library('tdlib', required: false) # Cannot be found via pkg-config rw = declare_dependency( dependencies: [ @@ -53,14 +49,13 @@ foreach name, pyx : extension_data_cpp endforeach if tdlib.found() - # Still cannot find the tdlib headers - # py.extension_module('tdlib', - # sources: 'tdlib.pyx', - # subdir: 'sage/graphs/graph_decompositions', - # install: true, - # override_options : ['cython_language=cpp'], - # include_directories: [inc_cpython, inc_data_structures], - # dependencies: [py_dep, cysignals, tdlib], - # ) + py.extension_module('tdlib', + sources: 'tdlib.pyx', + subdir: 'sage/graphs/graph_decompositions', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, tdlib], + ) endif diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 737005610c1..40a95e7e590 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -1,13 +1,6 @@ -bliss = declare_dependency( - dependencies: [ - cc.find_library('bliss', required: false), - ] -) -mcqd = declare_dependency( - dependencies: [ - cc.find_library('mcqd', required: false), - ] -) +bliss = cc.find_library('bliss', required: false) +mcqd = cc.find_library('mcqd', required: false) +cliquer = cc.find_library('cliquer') # Cannot be found via pkg-config planarity = declare_dependency( @@ -78,7 +71,7 @@ foreach name, pyx : extension_data subdir: 'sage/graphs', install: true, include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp, planarity], + dependencies: [py_dep, cysignals, cliquer, flint, gmp, planarity], ) endforeach @@ -100,26 +93,24 @@ foreach name, pyx : extension_data_cpp ) endforeach if bliss.found() - # Still cannot find the bliss header - # py.extension_module('bliss', - # sources: files('bliss.pyx'), - # subdir: 'sage/graphs', - # install: true, - # override_options : ['cython_language=cpp'], - # include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - # dependencies: [py_dep, cysignals, bliss], - # ) + py.extension_module('bliss', + sources: files('bliss.pyx'), + subdir: 'sage/graphs', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, bliss], + ) endif if mcqd.found() - # Still cannot find the mcqd header - # py.extension_module('mcqd', - # sources: files('mcqd.pyx'), - # subdir: 'sage/graphs', - # install: true, - # override_options : ['cython_language=cpp'], - # include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - # dependencies: [py_dep, cysignals, mcqd], - # ) + py.extension_module('mcqd', + sources: files('mcqd.pyx'), + subdir: 'sage/graphs', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, mcqd], + ) endif subdir('base') diff --git a/src/sage/groups/__init__.py b/src/sage/groups/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/__init__.py b/src/sage/groups/perm_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/perm_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/meson.build b/src/sage/groups/perm_gps/meson.build index ab4070d34b1..e964b9ff4dd 100644 --- a/src/sage/groups/perm_gps/meson.build +++ b/src/sage/groups/perm_gps/meson.build @@ -20,7 +20,7 @@ foreach name, pyx : extension_data subdir: 'sage/groups/perm_gps', install: true, include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, gmp], + dependencies: [py_dep, cysignals, gap, gmp], ) endforeach diff --git a/src/sage/groups/perm_gps/partn_ref/__init__.py b/src/sage/groups/perm_gps/partn_ref/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/perm_gps/partn_ref/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/__init__.py b/src/sage/libs/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/libs/gap/__init__.py b/src/sage/libs/gap/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index 59885f1efed..5214a0ced62 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -24,7 +24,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/gap', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], + dependencies: [py_dep, cysignals, gap, gmp], ) endforeach diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index 3c5800390ce..f572e019917 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -52,7 +52,59 @@ foreach name, pyx : extension_data endforeach extension_data_cpp = { - 'expression': files('expression.pyx'), + 'expression': files('expression.pyx', + 'ginac/add.cpp', + 'ginac/archive.cpp', + 'ginac/assume.cpp', + 'ginac/basic.cpp', + 'ginac/cmatcher.cpp', + 'ginac/constant.cpp', + 'ginac/context.cpp', + 'ginac/ex.cpp', + 'ginac/expair.cpp', + 'ginac/expairseq.cpp', + 'ginac/exprseq.cpp', + 'ginac/fderivative.cpp', + 'ginac/function.cpp', + 'ginac/function_info.cpp', + 'ginac/infinity.cpp', + 'ginac/infoflagbase.cpp', + 'ginac/inifcns.cpp', + 'ginac/inifcns_comb.cpp', + 'ginac/inifcns_gamma.cpp', + 'ginac/inifcns_hyperb.cpp', + 'ginac/inifcns_hyperg.cpp', + 'ginac/inifcns_nstdsums.cpp', + 'ginac/inifcns_orthopoly.cpp', + 'ginac/inifcns_trans.cpp', + 'ginac/inifcns_trig.cpp', + 'ginac/inifcns_zeta.cpp', + 'ginac/lst.cpp', + 'ginac/matrix.cpp', + 'ginac/mpoly-giac.cpp', + 'ginac/mpoly-ginac.cpp', + 'ginac/mpoly-singular.cpp', + 'ginac/mpoly.cpp', + 'ginac/mul.cpp', + 'ginac/normal.cpp', + 'ginac/numeric.cpp', + 'ginac/operators.cpp', + 'ginac/order.cpp', + 'ginac/power.cpp', + 'ginac/print.cpp', + 'ginac/pseries.cpp', + 'ginac/py_funcs.cpp', + 'ginac/registrar.cpp', + 'ginac/relational.cpp', + 'ginac/remember.cpp', + 'ginac/sum.cpp', + 'ginac/symbol.cpp', + 'ginac/templates.cpp', + 'ginac/upoly-ginac.cpp', + 'ginac/useries.cpp', + 'ginac/utils.cpp', + 'ginac/wildcard.cpp', + ), } foreach name, pyx : extension_data_cpp From 2486d99c68e84bd63ab7ad2ac90900159d8cbb3d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 3 Nov 2023 10:52:01 +0000 Subject: [PATCH 036/229] fix ci --- .github/workflows/ci-meson.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index de268f733c2..9fd6475627e 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -61,7 +61,9 @@ jobs: - name: Bootstrap shell: bash -l {0} - run: ./bootstrap + run: python -m sage_setup.autogen.interpreters src/sage/ext/interpreters + env: + PYTHONPATH: src - name: Build shell: bash -l {0} From 3e5f3c135f59b21463f5675a482c3125626d0703 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 4 Nov 2023 02:30:55 +0000 Subject: [PATCH 037/229] Improve symbolic compilation --- src/sage/symbolic/meson.build | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index f572e019917..613f70b8de7 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -1,7 +1,7 @@ # cannot be found via pkg-config singular = declare_dependency( dependencies: [ - cc.find_library('singular', required: false), + cc.find_library('Singular', required: false), ], ) ginac = declare_dependency( @@ -113,8 +113,9 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/symbolic', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, ginac, gmp, gsl, mpfr, pari, singular], + cpp_args : '-std=c++11', + include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings, include_directories('../libs/gmp')], + dependencies: [py_dep, cypari2, cysignals, gmp, gmpxx, flint, ginac, gsl, m, mpfr, pari, singular], ) endforeach From 3990cc02e1999efa410459e2016a359a7249d85f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 9 Nov 2023 21:17:16 +0000 Subject: [PATCH 038/229] improve docs --- src/doc/en/developer/meson.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst index 422aa5001cf..c1e62a5767b 100644 --- a/src/doc/en/developer/meson.rst +++ b/src/doc/en/developer/meson.rst @@ -4,11 +4,11 @@ Assume we're starting from a clean repo and a fully set up conda environment:: ./bootstrap-conda mamba env create --file src/environment-dev-3.11.yml --name sage-dev conda activate sage-dev - ./bootstrap ``` (Note, that in the codespace environment you first have to delete the already compiled files, e.g. with ``shopt -s globstar`` followed by ``rm src/**/*.so`` +or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done`` ) To compile and install the project in editable install, just use From d8c04cf0e54b19d105a6b3a40dc17330b1ca62b4 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 9 Nov 2023 21:18:08 +0000 Subject: [PATCH 039/229] git ignore old so files --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index aa04337d12a..1320e747ed2 100644 --- a/.gitignore +++ b/.gitignore @@ -151,6 +151,7 @@ __pycache__/ # Generated Cython files *.so **/*.so +**/*.so.old /src/cython_debug # Most C and C++ files are generated by Cython and should not # be included in the sdist. From c27aa7be6afd0e2724ce8db29620d794f51c227a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 9 Nov 2023 21:18:29 +0000 Subject: [PATCH 040/229] use dependency to find singular --- src/sage/symbolic/meson.build | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index 613f70b8de7..d1e746e0b5e 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -1,9 +1,5 @@ # cannot be found via pkg-config -singular = declare_dependency( - dependencies: [ - cc.find_library('Singular', required: false), - ], -) +singular = dependency('Singular') ginac = declare_dependency( dependencies: [ cc.find_library('ginac', required: false), From f0cbcfef7405ffbeddca1505fb6597bcf7379ac6 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 11 Nov 2023 01:34:47 +0000 Subject: [PATCH 041/229] remove outdated comment --- src/sage/symbolic/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index d1e746e0b5e..3baa05b5e7f 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -1,4 +1,3 @@ -# cannot be found via pkg-config singular = dependency('Singular') ginac = declare_dependency( dependencies: [ From e70b24eadc021d0774ffede0389bb50ad424ac6a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 11 Nov 2023 16:18:09 +0000 Subject: [PATCH 042/229] remove gmpxx in symbolic --- src/sage/symbolic/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index 3baa05b5e7f..e6df18250e2 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -110,7 +110,7 @@ foreach name, pyx : extension_data_cpp override_options : ['cython_language=cpp'], cpp_args : '-std=c++11', include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings, include_directories('../libs/gmp')], - dependencies: [py_dep, cypari2, cysignals, gmp, gmpxx, flint, ginac, gsl, m, mpfr, pari, singular], + dependencies: [py_dep, cypari2, cysignals, gmp, flint, ginac, gsl, m, mpfr, pari, singular], ) endforeach From 4519e180539a0c4817e195b592159f7f500cba0e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 11 Nov 2023 16:47:57 +0000 Subject: [PATCH 043/229] fix a few runtime errors --- src/sage/geometry/triangulation/meson.build | 2 +- src/sage/modules/__init__.py | 1 + src/sage/rings/polynomial/__init__.py | 1 + 3 files changed, 3 insertions(+), 1 deletion(-) create mode 100644 src/sage/modules/__init__.py create mode 100644 src/sage/rings/polynomial/__init__.py diff --git a/src/sage/geometry/triangulation/meson.build b/src/sage/geometry/triangulation/meson.build index a47c8b06a1e..575756c1c61 100644 --- a/src/sage/geometry/triangulation/meson.build +++ b/src/sage/geometry/triangulation/meson.build @@ -6,7 +6,7 @@ py.install_sources( ) extension_data_cpp = { - 'base': files('base.pyx'), + 'base': files('base.pyx', 'functions.cc', 'data.cc', 'triangulations.cc'), } foreach name, pyx : extension_data_cpp diff --git a/src/sage/modules/__init__.py b/src/sage/modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/__init__.py b/src/sage/rings/polynomial/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/polynomial/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name From e4afb294a09a9e025639865eaffd6a46351dec66 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 12 Nov 2023 18:27:51 +0000 Subject: [PATCH 044/229] Properly compile dynamics --- .../dynamics/arithmetic_dynamics/meson.build | 28 +++++++++++++++++++ .../dynamics/complex_dynamics/meson.build | 20 +++++++++++++ src/sage/dynamics/meson.build | 11 ++++++++ src/sage/meson.build | 2 +- 4 files changed, 60 insertions(+), 1 deletion(-) create mode 100644 src/sage/dynamics/arithmetic_dynamics/meson.build create mode 100644 src/sage/dynamics/complex_dynamics/meson.build create mode 100644 src/sage/dynamics/meson.build diff --git a/src/sage/dynamics/arithmetic_dynamics/meson.build b/src/sage/dynamics/arithmetic_dynamics/meson.build new file mode 100644 index 00000000000..45d4d11c73d --- /dev/null +++ b/src/sage/dynamics/arithmetic_dynamics/meson.build @@ -0,0 +1,28 @@ +py.install_sources( + 'affine_ds.py', + 'all.py', + 'berkovich_ds.py', + 'dynamical_semigroup.py', + 'endPN_automorphism_group.py', + 'endPN_minimal_model.py', + 'generic_ds.py', + 'product_projective_ds.py', + 'projective_ds.py', + 'wehlerK3.py', + subdir: 'sage/dynamics/arithmetic_dynamics', +) + +extension_data = { + 'projective_ds_helper': files('projective_ds_helper.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/dynamics/arithmetic_dynamics', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) +endforeach + diff --git a/src/sage/dynamics/complex_dynamics/meson.build b/src/sage/dynamics/complex_dynamics/meson.build new file mode 100644 index 00000000000..22426829362 --- /dev/null +++ b/src/sage/dynamics/complex_dynamics/meson.build @@ -0,0 +1,20 @@ +py.install_sources( + 'all.py', + 'mandel_julia.py', + subdir: 'sage/dynamics/complex_dynamics', +) + +extension_data = { + 'mandel_julia_helper': files('mandel_julia_helper.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/dynamics/complex_dynamics', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/dynamics/meson.build b/src/sage/dynamics/meson.build new file mode 100644 index 00000000000..3d9a73c29a2 --- /dev/null +++ b/src/sage/dynamics/meson.build @@ -0,0 +1,11 @@ +py.install_sources( + 'all.py', + 'finite_dynamical_system.py', + 'finite_dynamical_system_catalog.py', + 'surface_dynamics_deprecation.py', + subdir: 'sage/dynamics', +) + +subdir('arithmetic_dynamics') +install_subdir('cellular_automata', install_dir: sage_install_dir / 'dynamics') +subdir('complex_dynamics') diff --git a/src/sage/meson.build b/src/sage/meson.build index 7513244c0b2..2ed1c3abe89 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -4,7 +4,6 @@ sage_install_dir = py.get_install_dir() / 'sage' no_processing = [ 'databases', 'doctest', - 'dynamics', 'features', 'game_theory', 'homology', @@ -79,3 +78,4 @@ subdir('sets') subdir('stats') subdir('symbolic') subdir('tests') +subdir('dynamics') From c0e6c5955fd9bb01ad0d78180470a70026596ce9 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 12 Nov 2023 18:31:49 +0000 Subject: [PATCH 045/229] properly compile sat --- src/sage/meson.build | 2 +- src/sage/sat/meson.build | 8 ++++++++ src/sage/sat/solvers/meson.build | 23 +++++++++++++++++++++++ 3 files changed, 32 insertions(+), 1 deletion(-) create mode 100644 src/sage/sat/meson.build create mode 100644 src/sage/sat/solvers/meson.build diff --git a/src/sage/meson.build b/src/sage/meson.build index 2ed1c3abe89..1e89aef0d8a 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -13,7 +13,6 @@ no_processing = [ 'parallel', 'repl', 'sandpiles', - 'sat', 'tensor', 'topology', 'typeset', @@ -79,3 +78,4 @@ subdir('stats') subdir('symbolic') subdir('tests') subdir('dynamics') +subdir('sat') diff --git a/src/sage/sat/meson.build b/src/sage/sat/meson.build new file mode 100644 index 00000000000..33cdb49894b --- /dev/null +++ b/src/sage/sat/meson.build @@ -0,0 +1,8 @@ +py.install_sources( + 'all.py', + 'boolean_polynomials.py', + subdir: 'sage/sat', +) + +install_subdir('converters', install_dir: sage_install_dir / 'sat') +subdir('solvers') diff --git a/src/sage/sat/solvers/meson.build b/src/sage/sat/solvers/meson.build new file mode 100644 index 00000000000..8815ab02d49 --- /dev/null +++ b/src/sage/sat/solvers/meson.build @@ -0,0 +1,23 @@ +py.install_sources( + '__init__.py', + 'cryptominisat.py', + 'dimacs.py', + 'picosat.py', + 'sat_lp.py', + subdir: 'sage/sat/solvers', +) + +extension_data = { + 'satsolver': files('satsolver.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/sat/solvers', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) +endforeach + From eaa04d4bee8678b7e3ddd8de7e2e6e8820bd26ab Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 12 Nov 2023 18:39:48 +0000 Subject: [PATCH 046/229] ci: run tests --- .github/workflows/ci-meson.yml | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 9fd6475627e..854762b48a1 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -70,7 +70,11 @@ jobs: run: | pip install --no-build-isolation --config-settings=builddir=builddir --editable . - - name: Test - if: success() || failure() + - name: Test import shell: bash -l {0} + continue-on-error: true run: ./sage -python -m pytest -c src/tox.ini --doctest-modules src + + - name: Test + shell: bash -l {0} + run: ./sage -t --all -p0 From 44d7498e0d4ec1b435e842e1d706c726e380e001 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 01:09:30 +0000 Subject: [PATCH 047/229] Fix a few runtime errors --- src/meson.build | 1 + src/sage/geometry/meson.build | 2 +- .../combinatorial_polyhedron/meson.build | 25 +++++++++++ src/sage/geometry/polyhedron/meson.build | 43 +++++++++++++++++++ src/sage/libs/coxeter3/meson.build | 29 +++++++------ src/sage/libs/eclib/meson.build | 2 +- src/sage/modular/arithgroup/farey.cpp | 2 +- src/sage/modular/arithgroup/meson.build | 2 +- src/sage/rings/meson.build | 2 +- src/sage/rings/polynomial/pbori/meson.build | 7 +-- .../schemes/hyperelliptic_curves/meson.build | 2 +- src/sage/stats/distributions/meson.build | 2 +- 12 files changed, 94 insertions(+), 25 deletions(-) create mode 100644 src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build create mode 100644 src/sage/geometry/polyhedron/meson.build diff --git a/src/meson.build b/src/meson.build index 6d6d59cca0f..5b4df8a8290 100644 --- a/src/meson.build +++ b/src/meson.build @@ -127,6 +127,7 @@ curl = declare_dependency( cc.find_library('curl'), ] ) +# Cannot be found via pkg-config ec = declare_dependency( dependencies: [ cc.find_library('ec'), diff --git a/src/sage/geometry/meson.build b/src/sage/geometry/meson.build index ce70f0d691a..4964ad981a5 100644 --- a/src/sage/geometry/meson.build +++ b/src/sage/geometry/meson.build @@ -41,6 +41,6 @@ endforeach install_subdir('hyperbolic_space', install_dir: sage_install_dir / 'geometry') install_subdir('hyperplane_arrangement', install_dir: sage_install_dir / 'geometry') -install_subdir('polyhedron', install_dir: sage_install_dir / 'geometry') +subdir('polyhedron') install_subdir('riemannian_manifolds', install_dir: sage_install_dir / 'geometry') subdir('triangulation') diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build new file mode 100644 index 00000000000..fcf98755cb1 --- /dev/null +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build @@ -0,0 +1,25 @@ +py.install_sources( + 'all.py', + subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', +) + +extension_data = { + 'base': files('base.pyx'), + 'combinatorial_face': files('combinatorial_face.pyx'), + 'conversions': files('conversions.pyx'), + 'face_iterator': files('face_iterator.pyx'), + 'face_list_data_structure': files('face_list_data_structure.pyx'), + 'list_of_faces': files('list_of_faces.pyx'), + 'polyhedron_face_lattice': files('polyhedron_face_lattice.pyx'), +} + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) +endforeach + diff --git a/src/sage/geometry/polyhedron/meson.build b/src/sage/geometry/polyhedron/meson.build new file mode 100644 index 00000000000..3234e6b0167 --- /dev/null +++ b/src/sage/geometry/polyhedron/meson.build @@ -0,0 +1,43 @@ +py.install_sources( + 'all.py', + 'backend_cdd.py', + 'backend_cdd_rdf.py', + 'backend_field.py', + 'backend_normaliz.py', + 'backend_number_field.py', + 'backend_polymake.py', + 'backend_ppl.py', + 'base.py', + 'base0.py', + 'base1.py', + 'base2.py', + 'base3.py', + 'base4.py', + 'base5.py', + 'base6.py', + 'base7.py', + 'base_QQ.py', + 'base_RDF.py', + 'base_ZZ.py', + 'base_mutable.py', + 'base_number_field.py', + 'cdd_file_format.py', + 'constructor.py', + 'double_description.py', + 'double_description_inhomogeneous.py', + 'face.py', + 'generating_function.py', + 'lattice_euclidean_group_element.py', + 'library.py', + 'misc.py', + 'palp_database.py', + 'parent.py', + 'plot.py', + 'ppl_lattice_polygon.py', + 'ppl_lattice_polytope.py', + 'representation.py', + subdir: 'sage/geometry/polyhedron', +) + +subdir('combinatorial_polyhedron') +install_subdir('modules', install_dir: sage_install_dir / 'geometry/polyhedron') diff --git a/src/sage/libs/coxeter3/meson.build b/src/sage/libs/coxeter3/meson.build index 877508d7916..8d9ea2019dc 100644 --- a/src/sage/libs/coxeter3/meson.build +++ b/src/sage/libs/coxeter3/meson.build @@ -1,3 +1,4 @@ +coxeter3 = cc.find_library('coxeter3', required: false) py.install_sources( '__init__.py', 'all__sagemath_coxeter3.py', @@ -6,18 +7,20 @@ py.install_sources( ) -extension_data_cpp = { - # 'coxeter': files('coxeter.pyx'), # not yet on conda -} +if coxeter3.found() + extension_data_cpp = { + 'coxeter': files('coxeter.pyx'), + } -foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/coxeter3', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, cysignals, coxeter3], - ) -endforeach + foreach name, pyx : extension_data_cpp + py.extension_module(name, + sources: pyx, + subdir: 'sage/libs/coxeter3', + install: true, + override_options : ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals, coxeter3], + ) + endforeach +endif diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index d47852e4d7b..5f5766801a3 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -20,7 +20,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], + dependencies: [py_dep, cysignals, flint, gmp, ec], ) endforeach diff --git a/src/sage/modular/arithgroup/farey.cpp b/src/sage/modular/arithgroup/farey.cpp index 209391676de..5c912b46ca9 100644 --- a/src/sage/modular/arithgroup/farey.cpp +++ b/src/sage/modular/arithgroup/farey.cpp @@ -29,7 +29,7 @@ #include #include "farey.hpp" -#include "sage/modular/arithgroup/farey_symbol.h" +#include "farey_symbol.h" using namespace std; diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 50dca19bc89..23772d05a33 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -28,7 +28,7 @@ foreach name, pyx : extension_data endforeach extension_data_cpp = { - 'farey_symbol': files('farey_symbol.pyx'), + 'farey_symbol': files('farey_symbol.pyx', 'sl2z.cpp', 'farey.cpp'), } foreach name, pyx : extension_data_cpp diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 442800e8eab..63438447097 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -101,7 +101,7 @@ foreach name, pyx : extension_data endforeach extension_data_cpp = { - 'bernmm': files('bernmm.pyx'), + 'bernmm': files('bernmm.pyx', 'bernmm/bern_modp.cpp', 'bernmm/bern_modp_util.cpp'),#, 'bernmm/bern_rat.cpp'), - TODO: Compilation error 'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), 'fraction_field_FpT': files('fraction_field_FpT.pyx'), 'rational': files('rational.pyx'), diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index c087b554e01..56482234dda 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -3,11 +3,8 @@ brial = declare_dependency( cc.find_library('brial', required: false), ] ) -brial_groebner = declare_dependency( - dependencies: [ - cc.find_library('brial-groebner', required: false), - ] -) +# Cannot be found via pkg-config +brial_groebner = cc.find_library('brial_groebner') py.install_sources( 'PyPolyBoRi.py', diff --git a/src/sage/schemes/hyperelliptic_curves/meson.build b/src/sage/schemes/hyperelliptic_curves/meson.build index b64793152ec..35cdc5c72a8 100644 --- a/src/sage/schemes/hyperelliptic_curves/meson.build +++ b/src/sage/schemes/hyperelliptic_curves/meson.build @@ -20,7 +20,7 @@ py.install_sources( ) extension_data_cpp = { - 'hypellfrob': files('hypellfrob.pyx'), + 'hypellfrob': files('hypellfrob.pyx', 'hypellfrob/hypellfrob.cpp', 'hypellfrob/recurrences_ntl.cpp'), } foreach name, pyx : extension_data_cpp diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index 1eb9d97f24f..b5b8a74e3bb 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -6,7 +6,7 @@ py.install_sources( ) extension_data = { - 'discrete_gaussian_integer': files('discrete_gaussian_integer.pyx'), + 'discrete_gaussian_integer': files('discrete_gaussian_integer.pyx', 'dgs_gauss_mp.c', 'dgs_gauss_dp.c', 'dgs_bern.c'), } foreach name, pyx : extension_data From 9d5afd308647ce56385450efba3b9551d73357bf Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 07:54:21 +0000 Subject: [PATCH 048/229] Add missing singular dependencies Co-authored-by: Michael Orlitzky --- src/meson.build | 2 ++ src/sage/algebras/fusion_rings/meson.build | 2 +- src/sage/algebras/letterplace/meson.build | 2 +- src/sage/libs/singular/meson.build | 2 +- src/sage/matrix/meson.build | 2 +- src/sage/rings/polynomial/meson.build | 2 +- src/sage/symbolic/meson.build | 1 - 7 files changed, 7 insertions(+), 6 deletions(-) diff --git a/src/meson.build b/src/meson.build index 5b4df8a8290..b122ef343e0 100644 --- a/src/meson.build +++ b/src/meson.build @@ -218,6 +218,8 @@ mpc = declare_dependency( # Cannot be found via pkg-config gap = cc.find_library('gap') +singular = dependency('Singular') + # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path inc_cython = run_command(py, diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index 150a5f24699..1e4abfb33ec 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -33,7 +33,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp], + dependencies: [py_dep, cysignals, gmp, singular], ) endforeach diff --git a/src/sage/algebras/letterplace/meson.build b/src/sage/algebras/letterplace/meson.build index bc3bd24022e..213d8b05aaf 100644 --- a/src/sage/algebras/letterplace/meson.build +++ b/src/sage/algebras/letterplace/meson.build @@ -16,7 +16,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], + dependencies: [py_dep, gmp, singular], ) endforeach diff --git a/src/sage/libs/singular/meson.build b/src/sage/libs/singular/meson.build index 99e88d5b1ec..9dad471f9b8 100644 --- a/src/sage/libs/singular/meson.build +++ b/src/sage/libs/singular/meson.build @@ -21,7 +21,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cysignals, givaro, gmp], + dependencies: [py_dep, cysignals, givaro, gmp, singular], ) endforeach diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 3e7afdf609d..7a0362ef582 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -94,7 +94,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib], + dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index e1e9f80dbeb..1430321ca38 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -93,7 +93,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], + dependencies: [py_dep, arb, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari, singular], ) endforeach diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index e6df18250e2..ad22a4365d8 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -1,4 +1,3 @@ -singular = dependency('Singular') ginac = declare_dependency( dependencies: [ cc.find_library('ginac', required: false), From dec2e02809f7687041dfb30553a572355959636d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 07:58:33 +0000 Subject: [PATCH 049/229] Drop bogus ginac depencency Sage needs pynac (a fork of ginac), but it doesn't need ginac itself. To avoid potential problems, we drop ginac from the list o dependencies. This requires us to set inc_pynac to "ginac" (the name of the pynac directory) so that the build can find its headers. Co-authored-by: Michael Orlitzky --- src/sage/symbolic/meson.build | 9 ++------- 1 file changed, 2 insertions(+), 7 deletions(-) diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index ad22a4365d8..5c24532bda4 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -1,8 +1,3 @@ -ginac = declare_dependency( - dependencies: [ - cc.find_library('ginac', required: false), - ], -) inc_ginac = include_directories('ginac') inc_pynac = include_directories('.') @@ -41,7 +36,7 @@ foreach name, pyx : extension_data subdir: 'sage/symbolic', install: true, include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, ginac, gmp, gsl, mpfr, pari, singular], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, gsl, mpfr, pari, singular], ) endforeach @@ -109,7 +104,7 @@ foreach name, pyx : extension_data_cpp override_options : ['cython_language=cpp'], cpp_args : '-std=c++11', include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings, include_directories('../libs/gmp')], - dependencies: [py_dep, cypari2, cysignals, gmp, flint, ginac, gsl, m, mpfr, pari, singular], + dependencies: [py_dep, cypari2, cysignals, gmp, flint, gsl, m, mpfr, pari, singular], ) endforeach From 310975ed9aa6a6ced45883eef2a5d1e2a62c230b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 08:30:44 +0000 Subject: [PATCH 050/229] Fix a few more runtime errors --- src/sage/geometry/__init__.py | 1 + src/sage/geometry/polyhedron/__init__.py | 1 + .../geometry/polyhedron/combinatorial_polyhedron/__init__.py | 1 + src/sage/libs/eclib/meson.build | 2 +- src/sage/libs/meson.build | 5 ++++- src/sage/modular/arithgroup/meson.build | 5 +++-- 6 files changed, 11 insertions(+), 4 deletions(-) create mode 100644 src/sage/geometry/__init__.py create mode 100644 src/sage/geometry/polyhedron/__init__.py create mode 100644 src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py diff --git a/src/sage/geometry/__init__.py b/src/sage/geometry/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/__init__.py b/src/sage/geometry/polyhedron/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/polyhedron/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py b/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index 5f5766801a3..81efc60d663 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -20,7 +20,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp, ec], + dependencies: [py_dep, cysignals, ec, flint, gmp], ) endforeach diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index eb4bcbb2c3d..30c2aa4fcc6 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -3,6 +3,9 @@ sirocco = declare_dependency( cc.find_library('sirocco', required: false), ] ) +# cannot be found via pkg-config +ecl = cc.find_library('ecl') + py.install_sources( 'all.py', 'all__sagemath_coxeter3.py', @@ -19,7 +22,7 @@ extension_data = { #'meataxe': files('meataxe.pyx'), # not yet on conda - need meataxe } -dependencies = [py_dep, braiding, cysignals, ecm, gc, gmp, homfly, mtx, sirocco] +dependencies = [py_dep, braiding, cysignals, ecl, ecm, gc, gmp, homfly, mtx, sirocco] if sirocco.found() #extension_data['sirocco'] += files('sirocco.pxd') # not yet on conda diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 23772d05a33..6b7c4ca8871 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -1,3 +1,4 @@ +inc_farey = include_directories('.') py.install_sources( 'all.py', 'arithgroup_generic.py', @@ -22,7 +23,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/modular/arithgroup', install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_farey, inc_flint, inc_rings], dependencies: [py_dep, cysignals, flint, gmp], ) endforeach @@ -37,7 +38,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/modular/arithgroup', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_farey, inc_flint, inc_rings], dependencies: [py_dep, cysignals, flint, gmp], ) endforeach From 1c1bfa337e5d5089742b9313812ca085de97c4e4 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 08:53:46 +0000 Subject: [PATCH 051/229] Remove dependency on https://github.com/sagemath/sage/pull/36489 which is blocked for stupid reasons --- .github/workflows/ci-conda.yml | 28 +++++-------- pkgs/sage-conf/pyproject.toml | 7 ---- pkgs/sage-conf_meson/.gitignore | 7 ---- pkgs/sage-conf_meson/README.rst | 1 - pkgs/sage-conf_meson/VERSION.txt | 1 - pkgs/sage-conf_meson/_sage_conf | 1 - pkgs/sage-conf_meson/pyproject.toml | 1 - pkgs/sage-conf_meson/sage_conf.py | 6 --- pkgs/sage-conf_meson/setup.py | 62 ----------------------------- src/doc/en/installation/conda.rst | 5 +-- 10 files changed, 11 insertions(+), 108 deletions(-) delete mode 100644 pkgs/sage-conf_meson/.gitignore delete mode 120000 pkgs/sage-conf_meson/README.rst delete mode 100644 pkgs/sage-conf_meson/VERSION.txt delete mode 120000 pkgs/sage-conf_meson/_sage_conf delete mode 120000 pkgs/sage-conf_meson/pyproject.toml delete mode 100644 pkgs/sage-conf_meson/sage_conf.py delete mode 100644 pkgs/sage-conf_meson/setup.py diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index df331cf99c0..aaee77e5be3 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -66,21 +66,22 @@ jobs: conda info conda list - - name: Bootstrap + - name: Configure shell: bash -l {0} - run: ./bootstrap + continue-on-error: true + run: | + ./bootstrap + echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json" + ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX --enable-system-site-packages $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt --exclude rpy2); do echo --with-system-$pkg=force; done) + echo "::remove-matcher owner=configure-system-package-warning::" + echo "::remove-matcher owner=configure-system-package-error::" - name: Build shell: bash -l {0} run: | # Use --no-deps and pip check below to verify that all necessary dependencies are installed via conda. - echo "::group::sage-setup" - pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-setup - echo "::endgroup::" - echo "::group::sage-conf" - pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf_meson - echo "::endgroup::" - pip install --no-build-isolation --no-deps --config-settings editable_mode=compat -v -v -e ./src + pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf ./pkgs/sage-setup + pip install --no-build-isolation --no-deps -v -v -e ./src env: SAGE_NUM_THREADS: 2 @@ -94,15 +95,6 @@ jobs: shell: bash -l {0} run: ./sage -t --all -p0 - # We keep this step for now to make sure that the configure-based setup still works. - - name: Test configure - shell: bash -l {0} - run: | - echo "::add-matcher::.github/workflows/configure-systempackage-problem-matcher.json" - ./configure --enable-build-as-root --with-python=$CONDA_PREFIX/bin/python --prefix=$CONDA_PREFIX --enable-system-site-packages $(for pkg in $(./sage -package list :standard: --has-file spkg-configure.m4 --has-file distros/conda.txt --exclude rpy2); do echo --with-system-$pkg=force; done) - echo "::remove-matcher owner=configure-system-package-warning::" - echo "::remove-matcher owner=configure-system-package-error::" - - name: Print logs if: always() run: | diff --git a/pkgs/sage-conf/pyproject.toml b/pkgs/sage-conf/pyproject.toml index 9b39d5d8816..9787c3bdf00 100644 --- a/pkgs/sage-conf/pyproject.toml +++ b/pkgs/sage-conf/pyproject.toml @@ -1,10 +1,3 @@ [build-system] requires = ["setuptools", "wheel"] build-backend = "setuptools.build_meta" - -[project] -name = "sage-conf" -dynamic = ["version"] - -[tool.setuptools.dynamic] -version = {file = ["VERSION.txt"]} diff --git a/pkgs/sage-conf_meson/.gitignore b/pkgs/sage-conf_meson/.gitignore deleted file mode 100644 index ff1f6bd336e..00000000000 --- a/pkgs/sage-conf_meson/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -/_sage_conf/_conf.py -/builddir -/build -/dist -/*.egg-info -/.tox -/bin/sage-env-config diff --git a/pkgs/sage-conf_meson/README.rst b/pkgs/sage-conf_meson/README.rst deleted file mode 120000 index feda886cd36..00000000000 --- a/pkgs/sage-conf_meson/README.rst +++ /dev/null @@ -1 +0,0 @@ -../sage-conf/README.rst \ No newline at end of file diff --git a/pkgs/sage-conf_meson/VERSION.txt b/pkgs/sage-conf_meson/VERSION.txt deleted file mode 100644 index e3fab2e6628..00000000000 --- a/pkgs/sage-conf_meson/VERSION.txt +++ /dev/null @@ -1 +0,0 @@ -10.2.beta7 diff --git a/pkgs/sage-conf_meson/_sage_conf b/pkgs/sage-conf_meson/_sage_conf deleted file mode 120000 index d92a91bef8c..00000000000 --- a/pkgs/sage-conf_meson/_sage_conf +++ /dev/null @@ -1 +0,0 @@ -../sage-conf/_sage_conf \ No newline at end of file diff --git a/pkgs/sage-conf_meson/pyproject.toml b/pkgs/sage-conf_meson/pyproject.toml deleted file mode 120000 index 52c93c824e2..00000000000 --- a/pkgs/sage-conf_meson/pyproject.toml +++ /dev/null @@ -1 +0,0 @@ -../sage-conf/pyproject.toml \ No newline at end of file diff --git a/pkgs/sage-conf_meson/sage_conf.py b/pkgs/sage-conf_meson/sage_conf.py deleted file mode 100644 index 1b09bb76a83..00000000000 --- a/pkgs/sage-conf_meson/sage_conf.py +++ /dev/null @@ -1,6 +0,0 @@ -from _sage_conf.__main__ import _main - -from builddir._conf import * -from builddir.build_info import CONDA_PREFIX, SAGE_ROOT - -SAGE_LOCAL = CONDA_PREFIX diff --git a/pkgs/sage-conf_meson/setup.py b/pkgs/sage-conf_meson/setup.py deleted file mode 100644 index 34ce471d429..00000000000 --- a/pkgs/sage-conf_meson/setup.py +++ /dev/null @@ -1,62 +0,0 @@ -import os -import sys -from distutils.command.build_scripts import \ - build_scripts as distutils_build_scripts -from pathlib import Path - -from setuptools import setup -from setuptools.command.build_py import build_py as setuptools_build_py -from setuptools.command.editable_wheel import \ - editable_wheel as setuptools_editable_wheel -from setuptools.errors import SetupError - - -class build_py(setuptools_build_py): - def run(self): - here = Path(__file__).parent - if self.editable_mode: - root = here.parent.parent - else: - raise SetupError('Not supported') - - conda_prefix = os.environ.get('CONDA_PREFIX', '') - if not conda_prefix: - raise SetupError( - 'No conda environment is active. ' - 'See https://doc.sagemath.org/html/en/installation/conda.html on how to get started.' - ) - - builddir = here / "builddir" - cmd = f"cd {root} && meson setup {builddir} --wipe" - print(f"Running {cmd}") - sys.stdout.flush() - if os.system(cmd) != 0: - raise SetupError("configure failed") - - # Write build info - with open(builddir / 'build_info.py', 'w', encoding="utf-8") as build_info: - build_info.write(f'SAGE_ROOT = "{root}"\n') - build_info.write(f'CONDA_PREFIX = "{conda_prefix}"\n') - - -class build_scripts(distutils_build_scripts): - def run(self): - self.distribution.scripts.append(os.path.join('bin', 'sage-env-config')) - if not self.distribution.entry_points: - self.entry_points = self.distribution.entry_points = dict() - distutils_build_scripts.run(self) - - -class editable_wheel(setuptools_editable_wheel): - r""" - Customized so that exceptions raised by our build_py - do not lead to the "Customization incompatible with editable install" message - """ - _safely_run = setuptools_editable_wheel.run_command - - -setup( - cmdclass=dict( - build_py=build_py, build_scripts=build_scripts, editable_wheel=editable_wheel - ) -) diff --git a/src/doc/en/installation/conda.rst b/src/doc/en/installation/conda.rst index 8f1712ffa33..9456deff2b0 100644 --- a/src/doc/en/installation/conda.rst +++ b/src/doc/en/installation/conda.rst @@ -139,12 +139,9 @@ Here we assume that you are using a git checkout. - Bootstrap the source tree and install the build prerequisites and the Sage library:: $ ./bootstrap - $ pip install --no-build-isolation -v -v --editable ./pkgs/sage-conf_meson ./pkgs/sage-setup + $ pip install --no-build-isolation -v -v --editable ./pkgs/sage-conf_conda ./pkgs/sage-setup $ pip install --no-build-isolation --config-settings editable_mode=compat -v -v --editable ./src - In case of errors, try to use ``sage-conf_conda`` instead of ``sage-conf_meson``, - and please report the problem by opening an issue on GitHub. - - Verify that Sage has been installed:: $ sage -c 'print(version())' From 7727ab1fb64e34019078a9bb97b14faa2b4b6b7d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 08:56:20 +0000 Subject: [PATCH 052/229] fix farey compilation --- src/sage/modular/arithgroup/farey.cpp | 2 +- src/sage/modular/arithgroup/meson.build | 5 ++--- 2 files changed, 3 insertions(+), 4 deletions(-) diff --git a/src/sage/modular/arithgroup/farey.cpp b/src/sage/modular/arithgroup/farey.cpp index 5c912b46ca9..209391676de 100644 --- a/src/sage/modular/arithgroup/farey.cpp +++ b/src/sage/modular/arithgroup/farey.cpp @@ -29,7 +29,7 @@ #include #include "farey.hpp" -#include "farey_symbol.h" +#include "sage/modular/arithgroup/farey_symbol.h" using namespace std; diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 6b7c4ca8871..6e16cff8f1a 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -1,4 +1,3 @@ -inc_farey = include_directories('.') py.install_sources( 'all.py', 'arithgroup_generic.py', @@ -23,7 +22,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/modular/arithgroup', install: true, - include_directories: [inc_cpython, inc_ext, inc_farey, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_src, inc_flint, inc_rings], dependencies: [py_dep, cysignals, flint, gmp], ) endforeach @@ -38,7 +37,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/modular/arithgroup', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_farey, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_src, inc_flint, inc_rings], dependencies: [py_dep, cysignals, flint, gmp], ) endforeach From 8a6d93b821d59cc69dd4468af1f16d1e678d0537 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 09:31:07 +0000 Subject: [PATCH 053/229] remove duplicate dependency --- src/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/meson.build b/src/meson.build index b122ef343e0..21f450db56f 100644 --- a/src/meson.build +++ b/src/meson.build @@ -209,7 +209,6 @@ mpfi = declare_dependency( cc.find_library('mpfi'), ] ) -gsl = dependency('gsl') mpc = declare_dependency( dependencies: [ cc.find_library('mpc'), From d700f64c8636bcef5b7bc8b4c3f419a5b57e7ee2 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 11:01:54 +0000 Subject: [PATCH 054/229] Fix farey compilation --- src/sage/modular/arithgroup/farey.cpp | 2 +- src/sage/modular/arithgroup/meson.build | 16 ++++++++++++++-- 2 files changed, 15 insertions(+), 3 deletions(-) diff --git a/src/sage/modular/arithgroup/farey.cpp b/src/sage/modular/arithgroup/farey.cpp index 209391676de..5c912b46ca9 100644 --- a/src/sage/modular/arithgroup/farey.cpp +++ b/src/sage/modular/arithgroup/farey.cpp @@ -29,7 +29,7 @@ #include #include "farey.hpp" -#include "sage/modular/arithgroup/farey_symbol.h" +#include "farey_symbol.h" using namespace std; diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 6e16cff8f1a..b26ea6a6bf2 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -1,3 +1,4 @@ +inc_farey = meson.current_build_dir() py.install_sources( 'all.py', 'arithgroup_generic.py', @@ -22,11 +23,21 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/modular/arithgroup', install: true, - include_directories: [inc_cpython, inc_ext, inc_src, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], dependencies: [py_dep, cysignals, flint, gmp], ) endforeach +# Manually create header file, which otherwise is not found +farey_symbol_header = custom_target( + 'farey_symbol.h', + output : 'farey_symbol.h', + input : 'farey_symbol.pyx', + install: true, + install_dir: '.', + command : ['cython', '--cplus', '@INPUT@', '-o', '@OUTPUT@'], +) + extension_data_cpp = { 'farey_symbol': files('farey_symbol.pyx', 'sl2z.cpp', 'farey.cpp'), } @@ -37,7 +48,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/modular/arithgroup', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_src, inc_flint, inc_rings], + cpp_args: ['-I', inc_farey], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], dependencies: [py_dep, cysignals, flint, gmp], ) endforeach From c60c8665fa78e047df1b00be739efad74ab3db9b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 11:02:53 +0000 Subject: [PATCH 055/229] Remove obsolete uncommented code --- src/sage/all.py | 3 +-- src/sage/modular/arithgroup/all.py | 4 +--- 2 files changed, 2 insertions(+), 5 deletions(-) diff --git a/src/sage/all.py b/src/sage/all.py index e397cdee266..b54610c819d 100644 --- a/src/sage/all.py +++ b/src/sage/all.py @@ -85,8 +85,7 @@ from sage.arith.all import * from sage.matrix.all import * -# Cannot find ginac (and I don't know where to look for it) -#from sage.symbolic.all import * +from sage.symbolic.all import * from sage.modules.all import * from sage.monoids.all import * from sage.algebras.all import * diff --git a/src/sage/modular/arithgroup/all.py b/src/sage/modular/arithgroup/all.py index 0597ae7b886..d4fb241d1f9 100644 --- a/src/sage/modular/arithgroup/all.py +++ b/src/sage/modular/arithgroup/all.py @@ -15,6 +15,4 @@ from .congroup import (degeneracy_coset_representatives_gamma0, degeneracy_coset_representatives_gamma1) -# Cannot find FareySymbol (and I don't know where to look for it) -#from .farey_symbol import Farey as FareySymbol -FareySymbol = None +from .farey_symbol import Farey as FareySymbol From edcdb2a8daf92ed841a0e51dc92dfec3e072334e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 11:49:50 +0000 Subject: [PATCH 056/229] Try to fix farey header compilation --- src/sage/modular/arithgroup/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index b26ea6a6bf2..9b9179ff33e 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -35,7 +35,7 @@ farey_symbol_header = custom_target( input : 'farey_symbol.pyx', install: true, install_dir: '.', - command : ['cython', '--cplus', '@INPUT@', '-o', '@OUTPUT@'], + command : ['cython', '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', '../../../'], ) extension_data_cpp = { From 93d900088f78b34457ede8048262fed46b4b7b4f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 13:03:19 +0000 Subject: [PATCH 057/229] try to fix farey compilation in ci --- src/sage/modular/arithgroup/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 9b9179ff33e..4f7d3949875 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -35,7 +35,7 @@ farey_symbol_header = custom_target( input : 'farey_symbol.pyx', install: true, install_dir: '.', - command : ['cython', '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', '../../../'], + command : [cython.cmd_array(), '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', '../../../'], ) extension_data_cpp = { From 903c79bf4b9a7ffe261765b7f82aaf2cf5be72a5 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 13:29:40 +0000 Subject: [PATCH 058/229] Another try to fix farey --- src/sage/modular/arithgroup/meson.build | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 4f7d3949875..4b2f41e3c45 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -35,11 +35,11 @@ farey_symbol_header = custom_target( input : 'farey_symbol.pyx', install: true, install_dir: '.', - command : [cython.cmd_array(), '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', '../../../'], + command : [cython.cmd_array(), '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], ) extension_data_cpp = { - 'farey_symbol': files('farey_symbol.pyx', 'sl2z.cpp', 'farey.cpp'), + 'farey_symbol': [files('farey_symbol.pyx', 'sl2z.cpp', 'farey.cpp'), farey_symbol_header[0]], } foreach name, pyx : extension_data_cpp From 9d689cbda0d7211f2b18f554b445a87ea3ae5636 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 14:00:33 +0000 Subject: [PATCH 059/229] Don't install farey header --- src/sage/modular/arithgroup/meson.build | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 4b2f41e3c45..ff8f9862b50 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -33,8 +33,6 @@ farey_symbol_header = custom_target( 'farey_symbol.h', output : 'farey_symbol.h', input : 'farey_symbol.pyx', - install: true, - install_dir: '.', command : [cython.cmd_array(), '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], ) From 37a67ab802e6222a718b2e683a6c15c9f3753774 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 14 Nov 2023 14:28:24 +0000 Subject: [PATCH 060/229] Fix farey import error --- src/sage/modular/arithgroup/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index ff8f9862b50..ccaa0dc3811 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -48,7 +48,7 @@ foreach name, pyx : extension_data_cpp override_options : ['cython_language=cpp'], cpp_args: ['-I', inc_farey], include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], + dependencies: [py_dep, cysignals, flint, gmp, gmpxx], ) endforeach From 395c310fbc0c4482dfe05c0ee5915431fa21160f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 08:40:30 +0000 Subject: [PATCH 061/229] Remove old warning about sage.gaprc --- src/sage/libs/gap/util.pyx | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/src/sage/libs/gap/util.pyx b/src/sage/libs/gap/util.pyx index d37fe84f029..2476bbcc1f8 100644 --- a/src/sage/libs/gap/util.pyx +++ b/src/sage/libs/gap/util.pyx @@ -250,10 +250,7 @@ cdef initialize() noexcept: # Get the path to the sage.gaprc file and check that it exists sage_gaprc = os.path.join(os.path.dirname(__file__), 'sage.gaprc') - if not os.path.exists(sage_gaprc): - warnings.warn(f"Sage's GAP initialization file {sage_gaprc} is " - "is missing; some functionality may be limited") - else: + if os.path.exists(sage_gaprc): sage_gaprc = str_to_bytes(sage_gaprc, FS_ENCODING, "surrogateescape") argv[argc] = sage_gaprc argc += 1 From b63beef2adfd84d8a6870db3d0df3973d2a810d3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 09:50:56 +0000 Subject: [PATCH 062/229] Fix compilation of interpreters --- .github/workflows/ci-meson.yml | 6 ---- src/sage/ext/interpreters/meson.build | 10 +++--- src/sage/ext/meson.build | 36 +++++++++++++++++-- .../autogen/interpreters/generator.py | 2 +- .../autogen/interpreters/specs/cc.py | 4 +-- .../autogen/interpreters/specs/cdf.py | 2 +- .../autogen/interpreters/specs/element.py | 2 +- .../autogen/interpreters/specs/rr.py | 4 +-- 8 files changed, 45 insertions(+), 21 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 854762b48a1..d5fa873d0c9 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -59,12 +59,6 @@ jobs: conda info conda list - - name: Bootstrap - shell: bash -l {0} - run: python -m sage_setup.autogen.interpreters src/sage/ext/interpreters - env: - PYTHONPATH: src - - name: Build shell: bash -l {0} run: | diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index f86e7f8abe2..17057e737df 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -4,12 +4,12 @@ py.install_sources( ) extension_data = { - #'wrapper_cc': files('wrapper_cc.pyx'), # compilation error - #'wrapper_cdf': files('wrapper_cdf.pyx'), # compilation error - #'wrapper_el': files('wrapper_el.pyx'), # compilation error + 'wrapper_cc': files('wrapper_cc.pyx'), + 'wrapper_cdf': files('wrapper_cdf.pyx'), + 'wrapper_el': files('wrapper_el.pyx'), 'wrapper_py': files('wrapper_py.pyx'), 'wrapper_rdf': files('wrapper_rdf.pyx'), - #'wrapper_rr': files('wrapper_rr.pyx'), # compilation error + 'wrapper_rr': files('wrapper_rr.pyx'), } foreach name, pyx : extension_data @@ -18,7 +18,7 @@ foreach name, pyx : extension_data subdir: 'sage/ext/interpreters', install: true, include_directories: [inc_cpython, inc_ext, inc_interpreters, inc_rings, inc_src], - dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari], + dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], ) endforeach diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 58c8087dce7..b278e6fbb81 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -26,11 +26,41 @@ interpreters = custom_target( input: '../../sage_setup/autogen/interpreters/__init__.py', command: [py, '-m', 'sage_setup.autogen.interpreters', meson.current_source_dir() / 'interpreters'], # This is actually against the Meson philosophy, which does not like in-source builds. - # So normally you would do something like the following (left for a follow-up) + # So normally you would do something like the following + # however, this we currently cannot pass the generated files as sources to install_sources + # properly fixing this is left for a follow-up # command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..'], - install: true, - install_dir: sage_install_dir / 'ext' / 'interpreters' +) + +# Manually create header files, which otherwise is not found +wrapper_el_header = custom_target( + 'wrapper_el.h', + output : 'wrapper_el.h', + input : 'interpreters/wrapper_el.pyx', + command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) +wrapper_cc_header = custom_target( + 'wrapper_cc.h', + output : 'wrapper_cc.h', + input : 'interpreters/wrapper_cc.pyx', + command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) +wrapper_cdf_header = custom_target( + 'wrapper_cdf.h', + output : 'wrapper_cdf.h', + input : 'interpreters/wrapper_cdf.pyx', + command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) +wrapper_rr_header = custom_target( + 'wrapper_rr.h', + output : 'wrapper_rr.h', + input : 'interpreters/wrapper_rr.pyx', + command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) + +interpreters_dep = declare_dependency( + sources: [interpreters, wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], ) subdir('interpreters') diff --git a/src/sage_setup/autogen/interpreters/generator.py b/src/sage_setup/autogen/interpreters/generator.py index bec7cae2b47..33877422a8c 100644 --- a/src/sage_setup/autogen/interpreters/generator.py +++ b/src/sage_setup/autogen/interpreters/generator.py @@ -374,7 +374,7 @@ def write_wrapper(self, write): from sage.ext.fast_callable cimport Wrapper - cdef extern from "sage/ext/interpreters/interp_{{ s.name }}.c": + cdef extern from "interp_{{ s.name }}.c": {{ myself.func_header(cython=true) -}} {% if s.err_return != 'NULL' %} diff --git a/src/sage_setup/autogen/interpreters/specs/cc.py b/src/sage_setup/autogen/interpreters/specs/cc.py index ea5e8708647..e16252b0b79 100644 --- a/src/sage_setup/autogen/interpreters/specs/cc.py +++ b/src/sage_setup/autogen/interpreters/specs/cc.py @@ -149,7 +149,7 @@ def __init__(self): sage: print(interp.c_header) #include - #include "sage/ext/interpreters/wrapper_cc.h" + #include "wrapper_cc.h" So instructions where you need to interact with Python can @@ -171,7 +171,7 @@ def __init__(self): self.c_header = ri(0, ''' #include - #include "sage/ext/interpreters/wrapper_cc.h" + #include "wrapper_cc.h" ''') self.pxd_header = ri(0, diff --git a/src/sage_setup/autogen/interpreters/specs/cdf.py b/src/sage_setup/autogen/interpreters/specs/cdf.py index 137487e1de2..e85a9fbe802 100644 --- a/src/sage_setup/autogen/interpreters/specs/cdf.py +++ b/src/sage_setup/autogen/interpreters/specs/cdf.py @@ -85,7 +85,7 @@ def __init__(self): self.c_header = ri(0,""" #include #include - #include "sage/ext/interpreters/wrapper_cdf.h" + #include "wrapper_cdf.h" /* On Solaris, we need to define _Imaginary_I when compiling with GCC, * otherwise the constant I doesn't work. The definition below is based diff --git a/src/sage_setup/autogen/interpreters/specs/element.py b/src/sage_setup/autogen/interpreters/specs/element.py index bbb9c21ae57..2f280f703f1 100644 --- a/src/sage_setup/autogen/interpreters/specs/element.py +++ b/src/sage_setup/autogen/interpreters/specs/element.py @@ -105,7 +105,7 @@ def __init__(self): self.chunks = [self.mc_args, self.mc_constants, self.mc_stack, self.mc_domain_info, self.mc_code] self.c_header = ri(0, """ - #include "sage/ext/interpreters/wrapper_el.h" + #include "wrapper_el.h" #define CHECK(x) do_check(&(x), domain) diff --git a/src/sage_setup/autogen/interpreters/specs/rr.py b/src/sage_setup/autogen/interpreters/specs/rr.py index 264b694dfab..06452e24047 100644 --- a/src/sage_setup/autogen/interpreters/specs/rr.py +++ b/src/sage_setup/autogen/interpreters/specs/rr.py @@ -148,7 +148,7 @@ def __init__(self): sage: print(interp.c_header) #include - #include "sage/ext/interpreters/wrapper_rr.h" + #include "wrapper_rr.h" The function ``rr_py_call_helper`` is implemented in Cython:: @@ -188,7 +188,7 @@ def __init__(self): self.c_header = ri(0, ''' #include - #include "sage/ext/interpreters/wrapper_rr.h" + #include "wrapper_rr.h" ''') self.pxd_header = ri(0, From 49fa87b92996e0dec980d0f5239de50fea8916d4 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 09:51:15 +0000 Subject: [PATCH 063/229] Git-ignore all builddirs --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index 1320e747ed2..df81acac1b1 100644 --- a/.gitignore +++ b/.gitignore @@ -288,3 +288,4 @@ worktree* # meson build directory builddir +builddir-* From 82c5f2b45ef2a9b58099eb07d1061be0b9f92f6e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 09:51:29 +0000 Subject: [PATCH 064/229] Include static maxima file --- src/sage/interfaces/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build index 3a9d7b872fb..4c2bd0fe578 100644 --- a/src/sage/interfaces/meson.build +++ b/src/sage/interfaces/meson.build @@ -49,6 +49,7 @@ py.install_sources( 'read_data.py', 'rubik.py', 'sage0.py', + 'sage-maxima.lisp', 'scilab.py', 'singular.py', 'sympy.py', From 8453c1c8330abf95e2b4dd1565daecb2d7714924 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 09:56:32 +0000 Subject: [PATCH 065/229] Readd a few all imports --- src/sage/schemes/all.py | 9 +++------ 1 file changed, 3 insertions(+), 6 deletions(-) diff --git a/src/sage/schemes/all.py b/src/sage/schemes/all.py index d819c224e5d..23858c6f0c8 100644 --- a/src/sage/schemes/all.py +++ b/src/sage/schemes/all.py @@ -22,15 +22,13 @@ from .jacobians.all import * -# Runtime error -#from .hyperelliptic_curves.all import * +from .hyperelliptic_curves.all import * from .curves.all import * from .plane_conics.all import * -# Runtime error -#from .elliptic_curves.all import * +from .elliptic_curves.all import * from .plane_quartics.all import * @@ -44,7 +42,6 @@ from .product_projective.all import * -# Runtime error -#from .cyclic_covers.all import * +from .cyclic_covers.all import * from .berkovich.all import * From 97053a78e922ba6bbe0e0220c1b45c1746fef636 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 10:06:55 +0000 Subject: [PATCH 066/229] Recreate missing init files --- src/sage/algebras/__init__.py | 1 + src/sage/algebras/finite_dimensional_algebras/__init__.py | 1 + src/sage/algebras/fusion_rings/__init__.py | 1 + src/sage/algebras/hecke_algebras/__init__.py | 1 + src/sage/algebras/letterplace/__init__.py | 1 + src/sage/algebras/lie_algebras/__init__.py | 1 + src/sage/algebras/lie_conformal_algebras/__init__.py | 1 + src/sage/algebras/quantum_groups/__init__.py | 1 + src/sage/algebras/quatalg/__init__.py | 1 + src/sage/algebras/steenrod/__init__.py | 1 + src/sage/arith/__init__.py | 1 + src/sage/calculus/__init__.py | 1 + src/sage/calculus/transforms/__init__.py | 1 + src/sage/categories/examples/__init__.py | 1 + src/sage/coding/__init__.py | 1 + src/sage/coding/codecan/__init__.py | 1 + src/sage/coding/guruswami_sudan/__init__.py | 1 + src/sage/coding/source_coding/__init__.py | 1 + src/sage/combinat/__init__.py | 1 + src/sage/combinat/chas/__init__.py | 1 + src/sage/combinat/cluster_algebra_quiver/__init__.py | 1 + src/sage/combinat/crystals/__init__.py | 1 + src/sage/combinat/designs/__init__.py | 1 + src/sage/combinat/matrices/__init__.py | 1 + src/sage/combinat/ncsf_qsym/__init__.py | 1 + src/sage/combinat/ncsym/__init__.py | 1 + src/sage/combinat/path_tableaux/__init__.py | 1 + src/sage/combinat/posets/__init__.py | 1 + src/sage/combinat/rigged_configurations/__init__.py | 1 + src/sage/combinat/root_system/__init__.py | 1 + src/sage/combinat/sf/__init__.py | 1 + src/sage/combinat/species/__init__.py | 1 + src/sage/combinat/words/__init__.py | 1 + src/sage/combinat/words/notes/__init__.py | 1 + src/sage/crypto/block_cipher/__init__.py | 1 + src/sage/crypto/public_key/__init__.py | 1 + src/sage/databases/__init__.py | 1 + src/sage/doctest/tests/__init__.py | 1 + src/sage/dynamics/__init__.py | 1 + src/sage/dynamics/arithmetic_dynamics/__init__.py | 1 + src/sage/dynamics/cellular_automata/__init__.py | 1 + src/sage/dynamics/complex_dynamics/__init__.py | 1 + src/sage/ext/__init__.py | 1 + src/sage/ext/mac-app/__init__.py | 1 + src/sage/ext_data/__init__.py | 1 + src/sage/ext_data/doctest/__init__.py | 1 + src/sage/ext_data/doctest/invalid/__init__.py | 1 + src/sage/ext_data/gap/__init__.py | 1 + src/sage/ext_data/gap/joyner/__init__.py | 1 + src/sage/ext_data/graphs/__init__.py | 1 + src/sage/ext_data/kenzo/__init__.py | 1 + src/sage/ext_data/magma/__init__.py | 1 + src/sage/ext_data/magma/latex/__init__.py | 1 + src/sage/ext_data/magma/sage/__init__.py | 1 + src/sage/ext_data/mwrank/__init__.py | 1 + src/sage/ext_data/nbconvert/__init__.py | 1 + src/sage/ext_data/notebook-ipython/__init__.py | 1 + src/sage/ext_data/pari/__init__.py | 1 + src/sage/ext_data/pari/buzzard/__init__.py | 1 + src/sage/ext_data/pari/dokchitser/__init__.py | 1 + src/sage/ext_data/pari/simon/__init__.py | 1 + src/sage/ext_data/singular/__init__.py | 1 + src/sage/ext_data/singular/function_field/__init__.py | 1 + src/sage/ext_data/threejs/__init__.py | 1 + src/sage/ext_data/valgrind/__init__.py | 1 + src/sage/functions/__init__.py | 1 + src/sage/game_theory/__init__.py | 1 + src/sage/games/__init__.py | 1 + src/sage/geometry/hyperbolic_space/__init__.py | 1 + src/sage/geometry/hyperplane_arrangement/__init__.py | 1 + src/sage/geometry/polyhedron/modules/__init__.py | 1 + src/sage/geometry/riemannian_manifolds/__init__.py | 1 + src/sage/geometry/triangulation/__init__.py | 1 + src/sage/graphs/bliss_cpp/__init__.py | 1 + src/sage/graphs/cliquer/__init__.py | 1 + src/sage/graphs/generators/__init__.py | 1 + src/sage/groups/abelian_gps/__init__.py | 1 + src/sage/groups/additive_abelian/__init__.py | 1 + src/sage/groups/affine_gps/__init__.py | 1 + src/sage/groups/lie_gps/__init__.py | 1 + src/sage/groups/matrix_gps/__init__.py | 1 + src/sage/groups/misc_gps/__init__.py | 1 + src/sage/groups/perm_gps/partn_ref2/__init__.py | 1 + src/sage/groups/semimonomial_transformations/__init__.py | 1 + src/sage/homology/__init__.py | 1 + src/sage/interacts/__init__.py | 1 + src/sage/interfaces/__init__.py | 1 + src/sage/knots/__init__.py | 1 + src/sage/lfunctions/__init__.py | 1 + src/sage/libs/mpc/__init__.py | 1 + src/sage/libs/mpfi/__init__.py | 1 + src/sage/libs/mpfr/__init__.py | 1 + src/sage/libs/polybori/__init__.py | 1 + src/sage/logic/__init__.py | 1 + src/sage/manifolds/__init__.py | 1 + src/sage/manifolds/differentiable/__init__.py | 1 + src/sage/manifolds/differentiable/examples/__init__.py | 1 + src/sage/manifolds/subsets/__init__.py | 1 + src/sage/matroids/__init__.py | 1 + src/sage/misc/notes/__init__.py | 1 + src/sage/modular/__init__.py | 1 + src/sage/modular/abvar/__init__.py | 1 + src/sage/modular/arithgroup/__init__.py | 1 + src/sage/modular/btquotients/__init__.py | 1 + src/sage/modular/hecke/__init__.py | 1 + src/sage/modular/local_comp/__init__.py | 1 + src/sage/modular/modform/__init__.py | 1 + src/sage/modular/modform_hecketriangle/__init__.py | 1 + src/sage/modular/modsym/__init__.py | 1 + src/sage/modular/overconvergent/__init__.py | 1 + src/sage/modular/pollack_stevens/__init__.py | 1 + src/sage/modular/quasimodform/__init__.py | 1 + src/sage/modular/quatalg/__init__.py | 1 + src/sage/modular/ssmod/__init__.py | 1 + src/sage/modules/fg_pid/__init__.py | 1 + src/sage/modules/fp_graded/__init__.py | 1 + src/sage/modules/fp_graded/steenrod/__init__.py | 1 + src/sage/modules/with_basis/__init__.py | 1 + src/sage/monoids/__init__.py | 1 + src/sage/numerical/__init__.py | 1 + src/sage/numerical/backends/__init__.py | 1 + src/sage/parallel/__init__.py | 1 + src/sage/plot/__init__.py | 1 + src/sage/plot/plot3d/__init__.py | 1 + src/sage/probability/__init__.py | 1 + src/sage/quadratic_forms/__init__.py | 1 + src/sage/quadratic_forms/genera/__init__.py | 1 + src/sage/quivers/__init__.py | 1 + src/sage/rings/asymptotic/__init__.py | 1 + src/sage/rings/bernmm/__init__.py | 1 + src/sage/rings/convert/__init__.py | 1 + src/sage/rings/finite_rings/__init__.py | 1 + src/sage/rings/function_field/__init__.py | 1 + src/sage/rings/function_field/drinfeld_modules/__init__.py | 1 + src/sage/rings/invariants/__init__.py | 1 + src/sage/rings/number_field/__init__.py | 1 + src/sage/rings/padics/__init__.py | 1 + src/sage/rings/polynomial/padics/__init__.py | 1 + src/sage/rings/polynomial/weil/__init__.py | 1 + src/sage/rings/semirings/__init__.py | 1 + src/sage/rings/valuation/__init__.py | 1 + src/sage/sandpiles/__init__.py | 1 + src/sage/sat/__init__.py | 1 + src/sage/schemes/__init__.py | 1 + src/sage/schemes/affine/__init__.py | 1 + src/sage/schemes/berkovich/__init__.py | 1 + src/sage/schemes/curves/__init__.py | 1 + src/sage/schemes/cyclic_covers/__init__.py | 1 + src/sage/schemes/elliptic_curves/__init__.py | 1 + src/sage/schemes/generic/__init__.py | 1 + src/sage/schemes/generic/notes/__init__.py | 1 + src/sage/schemes/hyperelliptic_curves/__init__.py | 1 + src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py | 1 + src/sage/schemes/jacobians/__init__.py | 1 + src/sage/schemes/plane_conics/__init__.py | 1 + src/sage/schemes/plane_quartics/__init__.py | 1 + src/sage/schemes/product_projective/__init__.py | 1 + src/sage/schemes/projective/__init__.py | 1 + src/sage/schemes/riemann_surfaces/__init__.py | 1 + src/sage/schemes/toric/__init__.py | 1 + src/sage/schemes/toric/sheaf/__init__.py | 1 + src/sage/sets/__init__.py | 1 + src/sage/stats/__init__.py | 1 + src/sage/stats/distributions/__init__.py | 1 + src/sage/stats/hmm/__init__.py | 1 + src/sage/symbolic/ginac/__init__.py | 1 + src/sage/symbolic/integration/__init__.py | 1 + src/sage/tensor/__init__.py | 1 + src/sage/tensor/modules/__init__.py | 1 + src/sage/tests/books/__init__.py | 1 + src/sage/topology/__init__.py | 1 + src/sage/typeset/__init__.py | 1 + 172 files changed, 172 insertions(+) create mode 100644 src/sage/algebras/__init__.py create mode 100644 src/sage/algebras/finite_dimensional_algebras/__init__.py create mode 100644 src/sage/algebras/fusion_rings/__init__.py create mode 100644 src/sage/algebras/hecke_algebras/__init__.py create mode 100644 src/sage/algebras/letterplace/__init__.py create mode 100644 src/sage/algebras/lie_algebras/__init__.py create mode 100644 src/sage/algebras/lie_conformal_algebras/__init__.py create mode 100644 src/sage/algebras/quantum_groups/__init__.py create mode 100644 src/sage/algebras/quatalg/__init__.py create mode 100644 src/sage/algebras/steenrod/__init__.py create mode 100644 src/sage/arith/__init__.py create mode 100644 src/sage/calculus/__init__.py create mode 100644 src/sage/calculus/transforms/__init__.py create mode 100644 src/sage/categories/examples/__init__.py create mode 100644 src/sage/coding/__init__.py create mode 100644 src/sage/coding/codecan/__init__.py create mode 100644 src/sage/coding/guruswami_sudan/__init__.py create mode 100644 src/sage/coding/source_coding/__init__.py create mode 100644 src/sage/combinat/__init__.py create mode 100644 src/sage/combinat/chas/__init__.py create mode 100644 src/sage/combinat/cluster_algebra_quiver/__init__.py create mode 100644 src/sage/combinat/crystals/__init__.py create mode 100644 src/sage/combinat/designs/__init__.py create mode 100644 src/sage/combinat/matrices/__init__.py create mode 100644 src/sage/combinat/ncsf_qsym/__init__.py create mode 100644 src/sage/combinat/ncsym/__init__.py create mode 100644 src/sage/combinat/path_tableaux/__init__.py create mode 100644 src/sage/combinat/posets/__init__.py create mode 100644 src/sage/combinat/rigged_configurations/__init__.py create mode 100644 src/sage/combinat/root_system/__init__.py create mode 100644 src/sage/combinat/sf/__init__.py create mode 100644 src/sage/combinat/species/__init__.py create mode 100644 src/sage/combinat/words/__init__.py create mode 100644 src/sage/combinat/words/notes/__init__.py create mode 100644 src/sage/crypto/block_cipher/__init__.py create mode 100644 src/sage/crypto/public_key/__init__.py create mode 100644 src/sage/databases/__init__.py create mode 100644 src/sage/doctest/tests/__init__.py create mode 100644 src/sage/dynamics/__init__.py create mode 100644 src/sage/dynamics/arithmetic_dynamics/__init__.py create mode 100644 src/sage/dynamics/cellular_automata/__init__.py create mode 100644 src/sage/dynamics/complex_dynamics/__init__.py create mode 100644 src/sage/ext/__init__.py create mode 100644 src/sage/ext/mac-app/__init__.py create mode 100644 src/sage/ext_data/__init__.py create mode 100644 src/sage/ext_data/doctest/__init__.py create mode 100644 src/sage/ext_data/doctest/invalid/__init__.py create mode 100644 src/sage/ext_data/gap/__init__.py create mode 100644 src/sage/ext_data/gap/joyner/__init__.py create mode 100644 src/sage/ext_data/graphs/__init__.py create mode 100644 src/sage/ext_data/kenzo/__init__.py create mode 100644 src/sage/ext_data/magma/__init__.py create mode 100644 src/sage/ext_data/magma/latex/__init__.py create mode 100644 src/sage/ext_data/magma/sage/__init__.py create mode 100644 src/sage/ext_data/mwrank/__init__.py create mode 100644 src/sage/ext_data/nbconvert/__init__.py create mode 100644 src/sage/ext_data/notebook-ipython/__init__.py create mode 100644 src/sage/ext_data/pari/__init__.py create mode 100644 src/sage/ext_data/pari/buzzard/__init__.py create mode 100644 src/sage/ext_data/pari/dokchitser/__init__.py create mode 100644 src/sage/ext_data/pari/simon/__init__.py create mode 100644 src/sage/ext_data/singular/__init__.py create mode 100644 src/sage/ext_data/singular/function_field/__init__.py create mode 100644 src/sage/ext_data/threejs/__init__.py create mode 100644 src/sage/ext_data/valgrind/__init__.py create mode 100644 src/sage/functions/__init__.py create mode 100644 src/sage/game_theory/__init__.py create mode 100644 src/sage/games/__init__.py create mode 100644 src/sage/geometry/hyperbolic_space/__init__.py create mode 100644 src/sage/geometry/hyperplane_arrangement/__init__.py create mode 100644 src/sage/geometry/polyhedron/modules/__init__.py create mode 100644 src/sage/geometry/riemannian_manifolds/__init__.py create mode 100644 src/sage/geometry/triangulation/__init__.py create mode 100644 src/sage/graphs/bliss_cpp/__init__.py create mode 100644 src/sage/graphs/cliquer/__init__.py create mode 100644 src/sage/graphs/generators/__init__.py create mode 100644 src/sage/groups/abelian_gps/__init__.py create mode 100644 src/sage/groups/additive_abelian/__init__.py create mode 100644 src/sage/groups/affine_gps/__init__.py create mode 100644 src/sage/groups/lie_gps/__init__.py create mode 100644 src/sage/groups/matrix_gps/__init__.py create mode 100644 src/sage/groups/misc_gps/__init__.py create mode 100644 src/sage/groups/perm_gps/partn_ref2/__init__.py create mode 100644 src/sage/groups/semimonomial_transformations/__init__.py create mode 100644 src/sage/homology/__init__.py create mode 100644 src/sage/interacts/__init__.py create mode 100644 src/sage/interfaces/__init__.py create mode 100644 src/sage/knots/__init__.py create mode 100644 src/sage/lfunctions/__init__.py create mode 100644 src/sage/libs/mpc/__init__.py create mode 100644 src/sage/libs/mpfi/__init__.py create mode 100644 src/sage/libs/mpfr/__init__.py create mode 100644 src/sage/libs/polybori/__init__.py create mode 100644 src/sage/logic/__init__.py create mode 100644 src/sage/manifolds/__init__.py create mode 100644 src/sage/manifolds/differentiable/__init__.py create mode 100644 src/sage/manifolds/differentiable/examples/__init__.py create mode 100644 src/sage/manifolds/subsets/__init__.py create mode 100644 src/sage/matroids/__init__.py create mode 100644 src/sage/misc/notes/__init__.py create mode 100644 src/sage/modular/__init__.py create mode 100644 src/sage/modular/abvar/__init__.py create mode 100644 src/sage/modular/arithgroup/__init__.py create mode 100644 src/sage/modular/btquotients/__init__.py create mode 100644 src/sage/modular/hecke/__init__.py create mode 100644 src/sage/modular/local_comp/__init__.py create mode 100644 src/sage/modular/modform/__init__.py create mode 100644 src/sage/modular/modform_hecketriangle/__init__.py create mode 100644 src/sage/modular/modsym/__init__.py create mode 100644 src/sage/modular/overconvergent/__init__.py create mode 100644 src/sage/modular/pollack_stevens/__init__.py create mode 100644 src/sage/modular/quasimodform/__init__.py create mode 100644 src/sage/modular/quatalg/__init__.py create mode 100644 src/sage/modular/ssmod/__init__.py create mode 100644 src/sage/modules/fg_pid/__init__.py create mode 100644 src/sage/modules/fp_graded/__init__.py create mode 100644 src/sage/modules/fp_graded/steenrod/__init__.py create mode 100644 src/sage/modules/with_basis/__init__.py create mode 100644 src/sage/monoids/__init__.py create mode 100644 src/sage/numerical/__init__.py create mode 100644 src/sage/numerical/backends/__init__.py create mode 100644 src/sage/parallel/__init__.py create mode 100644 src/sage/plot/__init__.py create mode 100644 src/sage/plot/plot3d/__init__.py create mode 100644 src/sage/probability/__init__.py create mode 100644 src/sage/quadratic_forms/__init__.py create mode 100644 src/sage/quadratic_forms/genera/__init__.py create mode 100644 src/sage/quivers/__init__.py create mode 100644 src/sage/rings/asymptotic/__init__.py create mode 100644 src/sage/rings/bernmm/__init__.py create mode 100644 src/sage/rings/convert/__init__.py create mode 100644 src/sage/rings/finite_rings/__init__.py create mode 100644 src/sage/rings/function_field/__init__.py create mode 100644 src/sage/rings/function_field/drinfeld_modules/__init__.py create mode 100644 src/sage/rings/invariants/__init__.py create mode 100644 src/sage/rings/number_field/__init__.py create mode 100644 src/sage/rings/padics/__init__.py create mode 100644 src/sage/rings/polynomial/padics/__init__.py create mode 100644 src/sage/rings/polynomial/weil/__init__.py create mode 100644 src/sage/rings/semirings/__init__.py create mode 100644 src/sage/rings/valuation/__init__.py create mode 100644 src/sage/sandpiles/__init__.py create mode 100644 src/sage/sat/__init__.py create mode 100644 src/sage/schemes/__init__.py create mode 100644 src/sage/schemes/affine/__init__.py create mode 100644 src/sage/schemes/berkovich/__init__.py create mode 100644 src/sage/schemes/curves/__init__.py create mode 100644 src/sage/schemes/cyclic_covers/__init__.py create mode 100644 src/sage/schemes/elliptic_curves/__init__.py create mode 100644 src/sage/schemes/generic/__init__.py create mode 100644 src/sage/schemes/generic/notes/__init__.py create mode 100644 src/sage/schemes/hyperelliptic_curves/__init__.py create mode 100644 src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py create mode 100644 src/sage/schemes/jacobians/__init__.py create mode 100644 src/sage/schemes/plane_conics/__init__.py create mode 100644 src/sage/schemes/plane_quartics/__init__.py create mode 100644 src/sage/schemes/product_projective/__init__.py create mode 100644 src/sage/schemes/projective/__init__.py create mode 100644 src/sage/schemes/riemann_surfaces/__init__.py create mode 100644 src/sage/schemes/toric/__init__.py create mode 100644 src/sage/schemes/toric/sheaf/__init__.py create mode 100644 src/sage/sets/__init__.py create mode 100644 src/sage/stats/__init__.py create mode 100644 src/sage/stats/distributions/__init__.py create mode 100644 src/sage/stats/hmm/__init__.py create mode 100644 src/sage/symbolic/ginac/__init__.py create mode 100644 src/sage/symbolic/integration/__init__.py create mode 100644 src/sage/tensor/__init__.py create mode 100644 src/sage/tensor/modules/__init__.py create mode 100644 src/sage/tests/books/__init__.py create mode 100644 src/sage/topology/__init__.py create mode 100644 src/sage/typeset/__init__.py diff --git a/src/sage/algebras/__init__.py b/src/sage/algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/finite_dimensional_algebras/__init__.py b/src/sage/algebras/finite_dimensional_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/finite_dimensional_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/fusion_rings/__init__.py b/src/sage/algebras/fusion_rings/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/fusion_rings/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/hecke_algebras/__init__.py b/src/sage/algebras/hecke_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/hecke_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/letterplace/__init__.py b/src/sage/algebras/letterplace/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/letterplace/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/lie_algebras/__init__.py b/src/sage/algebras/lie_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/lie_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/lie_conformal_algebras/__init__.py b/src/sage/algebras/lie_conformal_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/lie_conformal_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/quantum_groups/__init__.py b/src/sage/algebras/quantum_groups/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/quantum_groups/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/quatalg/__init__.py b/src/sage/algebras/quatalg/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/quatalg/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/steenrod/__init__.py b/src/sage/algebras/steenrod/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/steenrod/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/arith/__init__.py b/src/sage/arith/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/arith/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/calculus/__init__.py b/src/sage/calculus/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/calculus/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/calculus/transforms/__init__.py b/src/sage/calculus/transforms/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/calculus/transforms/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/categories/examples/__init__.py b/src/sage/categories/examples/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/categories/examples/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/__init__.py b/src/sage/coding/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/codecan/__init__.py b/src/sage/coding/codecan/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/codecan/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/guruswami_sudan/__init__.py b/src/sage/coding/guruswami_sudan/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/guruswami_sudan/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/source_coding/__init__.py b/src/sage/coding/source_coding/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/source_coding/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/__init__.py b/src/sage/combinat/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/chas/__init__.py b/src/sage/combinat/chas/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/chas/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/cluster_algebra_quiver/__init__.py b/src/sage/combinat/cluster_algebra_quiver/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/cluster_algebra_quiver/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/crystals/__init__.py b/src/sage/combinat/crystals/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/crystals/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/designs/__init__.py b/src/sage/combinat/designs/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/designs/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/matrices/__init__.py b/src/sage/combinat/matrices/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/matrices/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/ncsf_qsym/__init__.py b/src/sage/combinat/ncsf_qsym/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/ncsf_qsym/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/ncsym/__init__.py b/src/sage/combinat/ncsym/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/ncsym/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/path_tableaux/__init__.py b/src/sage/combinat/path_tableaux/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/path_tableaux/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/posets/__init__.py b/src/sage/combinat/posets/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/posets/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/rigged_configurations/__init__.py b/src/sage/combinat/rigged_configurations/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/rigged_configurations/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/root_system/__init__.py b/src/sage/combinat/root_system/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/root_system/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/sf/__init__.py b/src/sage/combinat/sf/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/sf/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/species/__init__.py b/src/sage/combinat/species/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/species/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/words/__init__.py b/src/sage/combinat/words/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/words/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/words/notes/__init__.py b/src/sage/combinat/words/notes/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/words/notes/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/crypto/block_cipher/__init__.py b/src/sage/crypto/block_cipher/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/crypto/block_cipher/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/crypto/public_key/__init__.py b/src/sage/crypto/public_key/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/crypto/public_key/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/databases/__init__.py b/src/sage/databases/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/databases/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/doctest/tests/__init__.py b/src/sage/doctest/tests/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/doctest/tests/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/__init__.py b/src/sage/dynamics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/arithmetic_dynamics/__init__.py b/src/sage/dynamics/arithmetic_dynamics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/arithmetic_dynamics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/cellular_automata/__init__.py b/src/sage/dynamics/cellular_automata/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/cellular_automata/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/complex_dynamics/__init__.py b/src/sage/dynamics/complex_dynamics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/complex_dynamics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext/__init__.py b/src/sage/ext/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext/mac-app/__init__.py b/src/sage/ext/mac-app/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext/mac-app/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/__init__.py b/src/sage/ext_data/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/doctest/__init__.py b/src/sage/ext_data/doctest/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/doctest/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/doctest/invalid/__init__.py b/src/sage/ext_data/doctest/invalid/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/doctest/invalid/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/gap/__init__.py b/src/sage/ext_data/gap/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/gap/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/gap/joyner/__init__.py b/src/sage/ext_data/gap/joyner/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/gap/joyner/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/graphs/__init__.py b/src/sage/ext_data/graphs/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/graphs/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/kenzo/__init__.py b/src/sage/ext_data/kenzo/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/kenzo/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/magma/__init__.py b/src/sage/ext_data/magma/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/magma/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/magma/latex/__init__.py b/src/sage/ext_data/magma/latex/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/magma/latex/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/magma/sage/__init__.py b/src/sage/ext_data/magma/sage/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/magma/sage/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/mwrank/__init__.py b/src/sage/ext_data/mwrank/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/mwrank/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/nbconvert/__init__.py b/src/sage/ext_data/nbconvert/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/nbconvert/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/notebook-ipython/__init__.py b/src/sage/ext_data/notebook-ipython/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/notebook-ipython/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/__init__.py b/src/sage/ext_data/pari/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/pari/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/buzzard/__init__.py b/src/sage/ext_data/pari/buzzard/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/pari/buzzard/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/dokchitser/__init__.py b/src/sage/ext_data/pari/dokchitser/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/pari/dokchitser/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/simon/__init__.py b/src/sage/ext_data/pari/simon/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/pari/simon/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/singular/__init__.py b/src/sage/ext_data/singular/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/singular/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/singular/function_field/__init__.py b/src/sage/ext_data/singular/function_field/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/singular/function_field/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/threejs/__init__.py b/src/sage/ext_data/threejs/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/threejs/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/valgrind/__init__.py b/src/sage/ext_data/valgrind/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext_data/valgrind/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/functions/__init__.py b/src/sage/functions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/functions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/game_theory/__init__.py b/src/sage/game_theory/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/game_theory/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/games/__init__.py b/src/sage/games/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/games/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/hyperbolic_space/__init__.py b/src/sage/geometry/hyperbolic_space/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/hyperbolic_space/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/hyperplane_arrangement/__init__.py b/src/sage/geometry/hyperplane_arrangement/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/hyperplane_arrangement/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/modules/__init__.py b/src/sage/geometry/polyhedron/modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/polyhedron/modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/riemannian_manifolds/__init__.py b/src/sage/geometry/riemannian_manifolds/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/riemannian_manifolds/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/triangulation/__init__.py b/src/sage/geometry/triangulation/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/triangulation/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/bliss_cpp/__init__.py b/src/sage/graphs/bliss_cpp/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/bliss_cpp/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/cliquer/__init__.py b/src/sage/graphs/cliquer/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/cliquer/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/generators/__init__.py b/src/sage/graphs/generators/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/generators/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/abelian_gps/__init__.py b/src/sage/groups/abelian_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/abelian_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/additive_abelian/__init__.py b/src/sage/groups/additive_abelian/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/additive_abelian/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/affine_gps/__init__.py b/src/sage/groups/affine_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/affine_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/lie_gps/__init__.py b/src/sage/groups/lie_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/lie_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/matrix_gps/__init__.py b/src/sage/groups/matrix_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/matrix_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/misc_gps/__init__.py b/src/sage/groups/misc_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/misc_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/partn_ref2/__init__.py b/src/sage/groups/perm_gps/partn_ref2/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/perm_gps/partn_ref2/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/semimonomial_transformations/__init__.py b/src/sage/groups/semimonomial_transformations/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/semimonomial_transformations/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/homology/__init__.py b/src/sage/homology/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/homology/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/interacts/__init__.py b/src/sage/interacts/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/interacts/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/interfaces/__init__.py b/src/sage/interfaces/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/interfaces/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/knots/__init__.py b/src/sage/knots/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/knots/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/lfunctions/__init__.py b/src/sage/lfunctions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/lfunctions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpc/__init__.py b/src/sage/libs/mpc/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/mpc/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpfi/__init__.py b/src/sage/libs/mpfi/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/mpfi/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpfr/__init__.py b/src/sage/libs/mpfr/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/mpfr/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/polybori/__init__.py b/src/sage/libs/polybori/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/polybori/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/logic/__init__.py b/src/sage/logic/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/logic/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/__init__.py b/src/sage/manifolds/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/differentiable/__init__.py b/src/sage/manifolds/differentiable/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/differentiable/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/differentiable/examples/__init__.py b/src/sage/manifolds/differentiable/examples/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/differentiable/examples/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/subsets/__init__.py b/src/sage/manifolds/subsets/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/subsets/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/matroids/__init__.py b/src/sage/matroids/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/matroids/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/misc/notes/__init__.py b/src/sage/misc/notes/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/misc/notes/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/__init__.py b/src/sage/modular/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/abvar/__init__.py b/src/sage/modular/abvar/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/abvar/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/arithgroup/__init__.py b/src/sage/modular/arithgroup/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/arithgroup/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/btquotients/__init__.py b/src/sage/modular/btquotients/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/btquotients/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/hecke/__init__.py b/src/sage/modular/hecke/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/hecke/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/local_comp/__init__.py b/src/sage/modular/local_comp/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/local_comp/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/modform/__init__.py b/src/sage/modular/modform/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/modform/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/modform_hecketriangle/__init__.py b/src/sage/modular/modform_hecketriangle/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/modform_hecketriangle/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/modsym/__init__.py b/src/sage/modular/modsym/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/modsym/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/overconvergent/__init__.py b/src/sage/modular/overconvergent/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/overconvergent/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/pollack_stevens/__init__.py b/src/sage/modular/pollack_stevens/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/pollack_stevens/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/quasimodform/__init__.py b/src/sage/modular/quasimodform/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/quasimodform/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/quatalg/__init__.py b/src/sage/modular/quatalg/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/quatalg/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/ssmod/__init__.py b/src/sage/modular/ssmod/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/ssmod/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/fg_pid/__init__.py b/src/sage/modules/fg_pid/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/fg_pid/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/fp_graded/__init__.py b/src/sage/modules/fp_graded/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/fp_graded/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/fp_graded/steenrod/__init__.py b/src/sage/modules/fp_graded/steenrod/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/fp_graded/steenrod/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/with_basis/__init__.py b/src/sage/modules/with_basis/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/with_basis/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/monoids/__init__.py b/src/sage/monoids/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/monoids/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/numerical/__init__.py b/src/sage/numerical/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/numerical/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/numerical/backends/__init__.py b/src/sage/numerical/backends/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/numerical/backends/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/parallel/__init__.py b/src/sage/parallel/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/parallel/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/plot/__init__.py b/src/sage/plot/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/plot/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/plot/plot3d/__init__.py b/src/sage/plot/plot3d/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/plot/plot3d/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/probability/__init__.py b/src/sage/probability/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/probability/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/quadratic_forms/__init__.py b/src/sage/quadratic_forms/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/quadratic_forms/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/quadratic_forms/genera/__init__.py b/src/sage/quadratic_forms/genera/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/quadratic_forms/genera/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/quivers/__init__.py b/src/sage/quivers/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/quivers/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/asymptotic/__init__.py b/src/sage/rings/asymptotic/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/asymptotic/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/bernmm/__init__.py b/src/sage/rings/bernmm/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/bernmm/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/convert/__init__.py b/src/sage/rings/convert/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/convert/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/finite_rings/__init__.py b/src/sage/rings/finite_rings/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/finite_rings/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/function_field/__init__.py b/src/sage/rings/function_field/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/function_field/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/function_field/drinfeld_modules/__init__.py b/src/sage/rings/function_field/drinfeld_modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/function_field/drinfeld_modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/invariants/__init__.py b/src/sage/rings/invariants/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/invariants/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/number_field/__init__.py b/src/sage/rings/number_field/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/number_field/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/padics/__init__.py b/src/sage/rings/padics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/padics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/padics/__init__.py b/src/sage/rings/polynomial/padics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/polynomial/padics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/weil/__init__.py b/src/sage/rings/polynomial/weil/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/polynomial/weil/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/semirings/__init__.py b/src/sage/rings/semirings/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/semirings/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/valuation/__init__.py b/src/sage/rings/valuation/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/valuation/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/sandpiles/__init__.py b/src/sage/sandpiles/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/sandpiles/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/sat/__init__.py b/src/sage/sat/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/sat/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/__init__.py b/src/sage/schemes/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/affine/__init__.py b/src/sage/schemes/affine/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/affine/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/berkovich/__init__.py b/src/sage/schemes/berkovich/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/berkovich/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/curves/__init__.py b/src/sage/schemes/curves/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/curves/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/cyclic_covers/__init__.py b/src/sage/schemes/cyclic_covers/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/cyclic_covers/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/elliptic_curves/__init__.py b/src/sage/schemes/elliptic_curves/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/elliptic_curves/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/generic/__init__.py b/src/sage/schemes/generic/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/generic/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/generic/notes/__init__.py b/src/sage/schemes/generic/notes/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/generic/notes/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/hyperelliptic_curves/__init__.py b/src/sage/schemes/hyperelliptic_curves/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/hyperelliptic_curves/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py b/src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/jacobians/__init__.py b/src/sage/schemes/jacobians/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/jacobians/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/plane_conics/__init__.py b/src/sage/schemes/plane_conics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/plane_conics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/plane_quartics/__init__.py b/src/sage/schemes/plane_quartics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/plane_quartics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/product_projective/__init__.py b/src/sage/schemes/product_projective/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/product_projective/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/projective/__init__.py b/src/sage/schemes/projective/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/projective/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/riemann_surfaces/__init__.py b/src/sage/schemes/riemann_surfaces/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/riemann_surfaces/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/toric/__init__.py b/src/sage/schemes/toric/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/toric/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/toric/sheaf/__init__.py b/src/sage/schemes/toric/sheaf/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/toric/sheaf/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/sets/__init__.py b/src/sage/sets/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/sets/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/stats/__init__.py b/src/sage/stats/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/stats/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/stats/distributions/__init__.py b/src/sage/stats/distributions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/stats/distributions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/stats/hmm/__init__.py b/src/sage/stats/hmm/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/stats/hmm/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/symbolic/ginac/__init__.py b/src/sage/symbolic/ginac/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/symbolic/ginac/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/symbolic/integration/__init__.py b/src/sage/symbolic/integration/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/symbolic/integration/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/tensor/__init__.py b/src/sage/tensor/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/tensor/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/tensor/modules/__init__.py b/src/sage/tensor/modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/tensor/modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/tests/books/__init__.py b/src/sage/tests/books/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/tests/books/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/topology/__init__.py b/src/sage/topology/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/topology/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/typeset/__init__.py b/src/sage/typeset/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/typeset/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name From efe272cd22652fda1759b1863fa9166f84eb8921 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 10:23:28 +0000 Subject: [PATCH 067/229] create dependency on generated interpreters --- src/sage/ext/meson.build | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index b278e6fbb81..74c1c5f9332 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -37,26 +37,26 @@ interpreters = custom_target( wrapper_el_header = custom_target( 'wrapper_el.h', output : 'wrapper_el.h', - input : 'interpreters/wrapper_el.pyx', - command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + input : ['interpreters/wrapper_el.pyx', interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], ) wrapper_cc_header = custom_target( 'wrapper_cc.h', output : 'wrapper_cc.h', - input : 'interpreters/wrapper_cc.pyx', - command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + input : ['interpreters/wrapper_cc.pyx', interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], ) wrapper_cdf_header = custom_target( 'wrapper_cdf.h', output : 'wrapper_cdf.h', - input : 'interpreters/wrapper_cdf.pyx', - command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + input : ['interpreters/wrapper_cdf.pyx', interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], ) wrapper_rr_header = custom_target( 'wrapper_rr.h', output : 'wrapper_rr.h', - input : 'interpreters/wrapper_rr.pyx', - command : [cython.cmd_array(), '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + input : ['interpreters/wrapper_rr.pyx', interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], ) interpreters_dep = declare_dependency( From 17888c93857a3f10f23edded743eb24f4221faa8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 10:27:58 +0000 Subject: [PATCH 068/229] Readd interpreter generation in ci --- .github/workflows/ci-meson.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index d5fa873d0c9..854762b48a1 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -59,6 +59,12 @@ jobs: conda info conda list + - name: Bootstrap + shell: bash -l {0} + run: python -m sage_setup.autogen.interpreters src/sage/ext/interpreters + env: + PYTHONPATH: src + - name: Build shell: bash -l {0} run: | From 946ef70aa7b20752bc3238608c09ed3a312e01d7 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 10:51:48 +0000 Subject: [PATCH 069/229] And remove some of the init files again --- src/sage/combinat/words/notes/__init__.py | 1 - src/sage/doctest/tests/__init__.py | 1 - src/sage/ext/mac-app/__init__.py | 1 - src/sage/ext_data/__init__.py | 1 - src/sage/ext_data/doctest/__init__.py | 1 - src/sage/ext_data/doctest/invalid/__init__.py | 1 - src/sage/ext_data/gap/__init__.py | 1 - src/sage/ext_data/gap/joyner/__init__.py | 1 - src/sage/ext_data/graphs/__init__.py | 1 - src/sage/ext_data/kenzo/__init__.py | 1 - src/sage/ext_data/magma/__init__.py | 1 - src/sage/ext_data/magma/latex/__init__.py | 1 - src/sage/ext_data/magma/sage/__init__.py | 1 - src/sage/ext_data/mwrank/__init__.py | 1 - src/sage/ext_data/nbconvert/__init__.py | 1 - src/sage/ext_data/notebook-ipython/__init__.py | 1 - src/sage/ext_data/pari/__init__.py | 1 - src/sage/ext_data/pari/buzzard/__init__.py | 1 - src/sage/ext_data/pari/dokchitser/__init__.py | 1 - src/sage/ext_data/pari/simon/__init__.py | 1 - src/sage/ext_data/singular/__init__.py | 1 - src/sage/ext_data/singular/function_field/__init__.py | 1 - src/sage/ext_data/threejs/__init__.py | 1 - src/sage/ext_data/valgrind/__init__.py | 1 - src/sage/graphs/bliss_cpp/__init__.py | 1 - src/sage/graphs/cliquer/__init__.py | 1 - src/sage/misc/notes/__init__.py | 1 - src/sage/rings/bernmm/__init__.py | 1 - src/sage/schemes/generic/notes/__init__.py | 1 - src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py | 1 - src/sage/symbolic/ginac/__init__.py | 1 - 31 files changed, 31 deletions(-) delete mode 100644 src/sage/combinat/words/notes/__init__.py delete mode 100644 src/sage/doctest/tests/__init__.py delete mode 100644 src/sage/ext/mac-app/__init__.py delete mode 100644 src/sage/ext_data/__init__.py delete mode 100644 src/sage/ext_data/doctest/__init__.py delete mode 100644 src/sage/ext_data/doctest/invalid/__init__.py delete mode 100644 src/sage/ext_data/gap/__init__.py delete mode 100644 src/sage/ext_data/gap/joyner/__init__.py delete mode 100644 src/sage/ext_data/graphs/__init__.py delete mode 100644 src/sage/ext_data/kenzo/__init__.py delete mode 100644 src/sage/ext_data/magma/__init__.py delete mode 100644 src/sage/ext_data/magma/latex/__init__.py delete mode 100644 src/sage/ext_data/magma/sage/__init__.py delete mode 100644 src/sage/ext_data/mwrank/__init__.py delete mode 100644 src/sage/ext_data/nbconvert/__init__.py delete mode 100644 src/sage/ext_data/notebook-ipython/__init__.py delete mode 100644 src/sage/ext_data/pari/__init__.py delete mode 100644 src/sage/ext_data/pari/buzzard/__init__.py delete mode 100644 src/sage/ext_data/pari/dokchitser/__init__.py delete mode 100644 src/sage/ext_data/pari/simon/__init__.py delete mode 100644 src/sage/ext_data/singular/__init__.py delete mode 100644 src/sage/ext_data/singular/function_field/__init__.py delete mode 100644 src/sage/ext_data/threejs/__init__.py delete mode 100644 src/sage/ext_data/valgrind/__init__.py delete mode 100644 src/sage/graphs/bliss_cpp/__init__.py delete mode 100644 src/sage/graphs/cliquer/__init__.py delete mode 100644 src/sage/misc/notes/__init__.py delete mode 100644 src/sage/rings/bernmm/__init__.py delete mode 100644 src/sage/schemes/generic/notes/__init__.py delete mode 100644 src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py delete mode 100644 src/sage/symbolic/ginac/__init__.py diff --git a/src/sage/combinat/words/notes/__init__.py b/src/sage/combinat/words/notes/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/words/notes/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/doctest/tests/__init__.py b/src/sage/doctest/tests/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/doctest/tests/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext/mac-app/__init__.py b/src/sage/ext/mac-app/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext/mac-app/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/__init__.py b/src/sage/ext_data/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/doctest/__init__.py b/src/sage/ext_data/doctest/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/doctest/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/doctest/invalid/__init__.py b/src/sage/ext_data/doctest/invalid/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/doctest/invalid/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/gap/__init__.py b/src/sage/ext_data/gap/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/gap/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/gap/joyner/__init__.py b/src/sage/ext_data/gap/joyner/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/gap/joyner/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/graphs/__init__.py b/src/sage/ext_data/graphs/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/graphs/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/kenzo/__init__.py b/src/sage/ext_data/kenzo/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/kenzo/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/magma/__init__.py b/src/sage/ext_data/magma/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/magma/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/magma/latex/__init__.py b/src/sage/ext_data/magma/latex/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/magma/latex/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/magma/sage/__init__.py b/src/sage/ext_data/magma/sage/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/magma/sage/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/mwrank/__init__.py b/src/sage/ext_data/mwrank/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/mwrank/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/nbconvert/__init__.py b/src/sage/ext_data/nbconvert/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/nbconvert/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/notebook-ipython/__init__.py b/src/sage/ext_data/notebook-ipython/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/notebook-ipython/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/__init__.py b/src/sage/ext_data/pari/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/pari/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/buzzard/__init__.py b/src/sage/ext_data/pari/buzzard/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/pari/buzzard/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/dokchitser/__init__.py b/src/sage/ext_data/pari/dokchitser/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/pari/dokchitser/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/pari/simon/__init__.py b/src/sage/ext_data/pari/simon/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/pari/simon/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/singular/__init__.py b/src/sage/ext_data/singular/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/singular/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/singular/function_field/__init__.py b/src/sage/ext_data/singular/function_field/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/singular/function_field/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/threejs/__init__.py b/src/sage/ext_data/threejs/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/threejs/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext_data/valgrind/__init__.py b/src/sage/ext_data/valgrind/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext_data/valgrind/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/graphs/bliss_cpp/__init__.py b/src/sage/graphs/bliss_cpp/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/graphs/bliss_cpp/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/graphs/cliquer/__init__.py b/src/sage/graphs/cliquer/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/graphs/cliquer/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/misc/notes/__init__.py b/src/sage/misc/notes/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/misc/notes/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/bernmm/__init__.py b/src/sage/rings/bernmm/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/bernmm/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/generic/notes/__init__.py b/src/sage/schemes/generic/notes/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/generic/notes/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py b/src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/hyperelliptic_curves/hypellfrob/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/symbolic/ginac/__init__.py b/src/sage/symbolic/ginac/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/symbolic/ginac/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name From 0189df54d7837dc4c77ae7b8b95b6fd7b31499ca Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 10:55:03 +0000 Subject: [PATCH 070/229] Fix interpreters include directory --- src/sage/ext/meson.build | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 74c1c5f9332..e0f87b894c5 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -38,25 +38,25 @@ wrapper_el_header = custom_target( 'wrapper_el.h', output : 'wrapper_el.h', input : ['interpreters/wrapper_el.pyx', interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) wrapper_cc_header = custom_target( 'wrapper_cc.h', output : 'wrapper_cc.h', input : ['interpreters/wrapper_cc.pyx', interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) wrapper_cdf_header = custom_target( 'wrapper_cdf.h', output : 'wrapper_cdf.h', input : ['interpreters/wrapper_cdf.pyx', interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) wrapper_rr_header = custom_target( 'wrapper_rr.h', output : 'wrapper_rr.h', input : ['interpreters/wrapper_rr.pyx', interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) interpreters_dep = declare_dependency( From ef0ba56f22f409e3bccb571c935d1432bfba9acf Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 11:26:36 +0000 Subject: [PATCH 071/229] Fix glpk import error --- src/sage/numerical/backends/meson.build | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index 57ae6e5c18d..cdf6b47be32 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -1,3 +1,5 @@ +# Cannot be found via pkg-config +glpk = cc.find_library('glpk') py.install_sources( 'all.py', 'all__sagemath_polyhedra.py', @@ -33,7 +35,7 @@ foreach name, pyx : extension_data subdir: 'sage/numerical/backends', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], + dependencies: [py_dep, cysignals, glpk, gmp], ) endforeach From 56e1d8d439ce359993ab2f9e6842b9dc300aa1b1 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 16 Nov 2023 11:38:10 +0000 Subject: [PATCH 072/229] Fix arb runtime error --- src/sage/libs/arb/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index e3b521de3ba..8fae1826015 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -14,7 +14,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/arb', install: true, include_directories: [inc_arb, inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, flint, gmp, mpfr], + dependencies: [py_dep, arb, flint, gmp, mpfr], ) endforeach From 1199bcd66cb9d6aa6c2c44b4734dbcbe94e07bb3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 18 Nov 2023 08:57:01 +0000 Subject: [PATCH 073/229] Add missing init file --- src/sage/ext/interpreters/__init__.py | 1 + 1 file changed, 1 insertion(+) create mode 100644 src/sage/ext/interpreters/__init__.py diff --git a/src/sage/ext/interpreters/__init__.py b/src/sage/ext/interpreters/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext/interpreters/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name From 5759c282f153267eaf520e9cd7957bc7765698c2 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 18 Nov 2023 09:05:39 +0000 Subject: [PATCH 074/229] Fix runtime errors due to missing glpk --- src/meson.build | 7 ++----- src/sage/libs/glpk/meson.build | 2 +- src/sage/numerical/backends/meson.build | 2 -- 3 files changed, 3 insertions(+), 8 deletions(-) diff --git a/src/meson.build b/src/meson.build index 21f450db56f..bcb33fcae80 100644 --- a/src/meson.build +++ b/src/meson.build @@ -138,11 +138,8 @@ ecm = declare_dependency( cc.find_library('ecm'), ] ) -glpk = declare_dependency( - dependencies: [ - cc.find_library('glpk'), - ] -) +# Cannot be found via pkg-config +glpk = cc.find_library('glpk') ppl = declare_dependency( dependencies: [ cc.find_library('ppl'), diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build index 05f81795705..adbeec10c85 100644 --- a/src/sage/libs/glpk/meson.build +++ b/src/sage/libs/glpk/meson.build @@ -13,7 +13,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/glpk', install: true, include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, gmp], + dependencies: [py_dep, cysignals, glpk, gmp], ) endforeach diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index cdf6b47be32..2b33de4a94e 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -1,5 +1,3 @@ -# Cannot be found via pkg-config -glpk = cc.find_library('glpk') py.install_sources( 'all.py', 'all__sagemath_polyhedra.py', From b4988ff4bc633af0b0d033fd70d2756a19e1bd7a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 18 Nov 2023 09:06:37 +0000 Subject: [PATCH 075/229] Don't remove init file in interpreters --- src/sage_setup/autogen/interpreters/__init__.py | 5 ----- 1 file changed, 5 deletions(-) diff --git a/src/sage_setup/autogen/interpreters/__init__.py b/src/sage_setup/autogen/interpreters/__init__.py index 75096d06b80..87dae60bce7 100644 --- a/src/sage_setup/autogen/interpreters/__init__.py +++ b/src/sage_setup/autogen/interpreters/__init__.py @@ -226,11 +226,6 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): except OSError: if not os.path.isdir(dirname): raise - # Remove leftover file from before move to namespace packages - try: - os.remove(os.path.join(dirname, '__init__.py')) - except FileNotFoundError: - pass # Although multiple files are generated by this function, since # they are all generated at once it suffices to make sure if just From bd9fd26890de642579c4a42acdcaa06658bd83b3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 19 Nov 2023 11:37:01 +0000 Subject: [PATCH 076/229] Fix missing pari dependency --- src/sage/schemes/elliptic_curves/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index dfed2dd7368..6dcd2411cd4 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -61,7 +61,7 @@ foreach name, pyx : extension_data subdir: 'sage/schemes/elliptic_curves', install: true, include_directories: [inc_cpython, inc_flint, inc_numpy, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, pari], ) endforeach From 592e2f45fb96e3327d72e3a638dfd8a7bda19ded Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 19 Nov 2023 12:06:42 +0000 Subject: [PATCH 077/229] cleanup ci --- .github/workflows/ci-meson.yml | 27 +++++++++++++++------------ bootstrap-conda | 3 ++- 2 files changed, 17 insertions(+), 13 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 854762b48a1..ff24205cb21 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -20,18 +20,19 @@ jobs: runs-on: ${{ matrix.os }} strategy: - fail-fast: ${{ github.event_name == 'pull_request' }} - max-parallel: ${{ github.event_name == 'pull_request' && 2 || 6 }} matrix: os: [ubuntu-latest, macos-latest] python: ['3.9', '3.10', '3.11'] - # Optional environment is disabled for now as its not yet working - # environment: [environment, environment-optional] - conda-env: [environment] steps: - uses: actions/checkout@v4 + - name: Merge CI fixes from sagemath/sage + run: | + .ci/merge-fixes.sh + env: + GH_TOKEN: ${{ github.token }} + - name: Create conda environment files run: ./bootstrap-conda @@ -42,6 +43,13 @@ jobs: key: ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} + - name: Compiler cache + uses: actions/cache@v3 + with: + path: ${{ github.workspace }}/.ccache + key: ${{ runner.os }}-meson-${{ matrix.python }}-${{ github.run_id }} + restore-keys: ${{ runner.os }}-meson-${{ matrix.python }}- + - name: Setup Conda environment uses: conda-incubator/setup-miniconda@v2 with: @@ -51,7 +59,7 @@ jobs: channels: conda-forge channel-priority: true activate-environment: sage - environment-file: src/${{ matrix.conda-env }}-${{ matrix.python }}.yml + environment-file: src/environment-${{ matrix.python }}.yml - name: Print Conda environment shell: bash -l {0} @@ -68,12 +76,7 @@ jobs: - name: Build shell: bash -l {0} run: | - pip install --no-build-isolation --config-settings=builddir=builddir --editable . - - - name: Test import - shell: bash -l {0} - continue-on-error: true - run: ./sage -python -m pytest -c src/tox.ini --doctest-modules src + pip install --no-build-isolation --config-settings=builddir=builddir . - name: Test shell: bash -l {0} diff --git a/bootstrap-conda b/bootstrap-conda index 9573a8917ed..bf1126c43d9 100755 --- a/bootstrap-conda +++ b/bootstrap-conda @@ -100,7 +100,8 @@ echo >&2 $0:$LINENO: generate conda environment files sed 's/name: sage-build/name: sage/' environment-template.yml echo " - meson" echo " - meson-python" - echo " - pytest" + echo " - ccache" + echo " - pytest" echo " # Additional packages providing all dependencies for the Sage library" for pkg in $SAGELIB_SYSTEM_PACKAGES; do echo " - $pkg" From 4f5b91b5c55cb543be84b42ca779ec0559116b97 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 19 Nov 2023 13:24:03 +0000 Subject: [PATCH 078/229] install ext_data --- src/sage/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/meson.build b/src/sage/meson.build index 1e89aef0d8a..0f2ec543604 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -4,6 +4,7 @@ sage_install_dir = py.get_install_dir() / 'sage' no_processing = [ 'databases', 'doctest', + 'ext_data', 'features', 'game_theory', 'homology', From 7a5c83ef054d504e783fa96bde41acde64c5c719 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 19 Nov 2023 13:25:02 +0000 Subject: [PATCH 079/229] Don't fail fast in ci --- .github/workflows/ci-meson.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index ff24205cb21..f3af009c22b 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -20,6 +20,7 @@ jobs: runs-on: ${{ matrix.os }} strategy: + fail-fast: false matrix: os: [ubuntu-latest, macos-latest] python: ['3.9', '3.10', '3.11'] From c00b92f0c29d7927ce22154debd4231602dc9236 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 19 Nov 2023 14:29:42 +0000 Subject: [PATCH 080/229] set env variables correctly --- meson.build | 39 --------------------------------------- src/meson.build | 5 +++++ src/sage/env.py | 7 ++++++- src/sage/meson.build | 32 ++++++++++++++++++++++++++++++++ 4 files changed, 43 insertions(+), 40 deletions(-) diff --git a/meson.build b/meson.build index 3a4723d21ac..aa8c8552f15 100644 --- a/meson.build +++ b/meson.build @@ -17,45 +17,6 @@ cc = meson.get_compiler('c') cpp = meson.get_compiler('cpp') cython = meson.get_compiler('cython') -# Generate the configuration file -conf_data = configuration_data() - -conf_data.set('PACKAGE_VERSION', '1.2.3') - -maxima = find_program('maxima', required: true) -conf_data.set('SAGE_MAXIMA', maxima.full_path()) -# Conda's ecl does not have any problems with Maxima, so nothing needs to be set here: -conf_data.set('SAGE_MAXIMA_FAS', '') - -# Kenzo cannot yet be provided by the system, so we always use the SAGE_LOCAL path for now. -conf_data.set('SAGE_KENZO_FAS', '\'${prefix}\'/lib/ecl/kenzo.fas') - -conf_data.set('SAGE_ARB_LIBRARY', 'arb') - -# Cannot be found via pkg-config -ntl = cc.find_library('ntl', required: true) -# It can be found, so we don't have to set anything here: -conf_data.set('NTL_INCDIR', '') -conf_data.set('NTL_LIBDIR', '') - -ecl_config = find_program('ecl-config', required: true) -conf_data.set('SAGE_ECL_CONFIG', ecl_config.full_path()) - -conf_data.set('SAGE_ARCHFLAGS', 'unset') - -# not needed when using conda, as we then don't build any pc files -conf_data.set('SAGE_PKG_CONFIG_PATH', '') - -openmp = dependency('openmp', required : false) -if openmp.found() - conf_data.set('OPENMP_CFLAGS', '-fopenmp') - conf_data.set('OPENMP_CXXFLAGS', '-fopenmp') -endif - -configure_file(input : 'pkgs/sage-conf_conda/_sage_conf/_conf.py.in', - output : '_conf.py', - configuration : conf_data) - test( 'import', py, diff --git a/src/meson.build b/src/meson.build index bcb33fcae80..8f5129dd25b 100644 --- a/src/meson.build +++ b/src/meson.build @@ -216,6 +216,11 @@ gap = cc.find_library('gap') singular = dependency('Singular') +maxima = find_program('maxima', required: true) + +# Cannot be found via pkg-config +ntl = cc.find_library('ntl', required: true) + # It's strange but cython cannot find its own include files # so we find them ourselves, and add them to the include path inc_cython = run_command(py, diff --git a/src/sage/env.py b/src/sage/env.py index 4515e90e912..42ab2fc1a8b 100644 --- a/src/sage/env.py +++ b/src/sage/env.py @@ -146,7 +146,12 @@ def var(key: str, *fallbacks: Optional[str], force: bool = False) -> Optional[st import sage_conf value = getattr(sage_conf, key, None) except ImportError: - pass + try: + import sage.config + value = getattr(sage.config, key, None) + except ImportError: + pass + # Try all fallbacks in order as long as we don't have a value for f in fallbacks: if value is not None: diff --git a/src/sage/meson.build b/src/sage/meson.build index 0f2ec543604..f3013186314 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -1,5 +1,37 @@ sage_install_dir = py.get_install_dir() / 'sage' +# Generate the configuration file +conf_data = configuration_data() +conf_data.set('PACKAGE_VERSION', '1.2.3') +conf_data.set('SAGE_ROOT', meson.current_source_dir() / '..' / '..') +conf_data.set('SAGE_MAXIMA', maxima.full_path()) +# Conda's ecl does not have any problems with Maxima, so nothing needs to be set here: +conf_data.set('SAGE_MAXIMA_FAS', '') +# Kenzo cannot yet be provided by the system, so we always use the SAGE_LOCAL path for now. +conf_data.set('SAGE_KENZO_FAS', '\'${prefix}\'/lib/ecl/kenzo.fas') +conf_data.set('SAGE_ARB_LIBRARY', 'arb') +# It can be found, so we don't have to set anything here: +conf_data.set('NTL_INCDIR', '') +conf_data.set('NTL_LIBDIR', '') +ecl_config = find_program('ecl-config', required: true) +conf_data.set('SAGE_ECL_CONFIG', ecl_config.full_path()) +conf_data.set('SAGE_ARCHFLAGS', 'unset') +# not needed when using conda, as we then don't build any pc files +conf_data.set('SAGE_PKG_CONFIG_PATH', '') +openmp = dependency('openmp', required : false) +if openmp.found() + conf_data.set('OPENMP_CFLAGS', '-fopenmp') + conf_data.set('OPENMP_CXXFLAGS', '-fopenmp') +endif + +configure_file( + input: '../../pkgs/sage-conf_conda/_sage_conf/_conf.py.in', + output: 'config.py', + install_dir: py.get_install_dir() / 'sage', + install: true, + configuration: conf_data +) + # Packages that need no processing and can be installed directly no_processing = [ 'databases', From b3910632fdc6bc2079ba34c1252aaa1570a51d6b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 19 Nov 2023 14:49:34 +0000 Subject: [PATCH 081/229] Add a few missing headers --- generate-meson.py | 2 +- src/sage/arith/meson.build | 7 ++++ src/sage/cpython/meson.build | 14 ++++++++ src/sage/ext/interpreters/meson.build | 6 ++++ src/sage/ext/meson.build | 8 +++++ src/sage/graphs/base/meson.build | 8 +++++ .../graphs/graph_decompositions/meson.build | 4 +++ src/sage/graphs/meson.build | 9 +++++ src/sage/libs/singular/meson.build | 6 ++++ src/sage/misc/meson.build | 15 ++++++++ src/sage/rings/convert/meson.build | 1 + src/sage/rings/finite_rings/meson.build | 12 +++++++ src/sage/rings/function_field/meson.build | 1 + src/sage/rings/meson.build | 35 +++++++++++++++++++ src/sage/rings/number_field/meson.build | 5 +++ src/sage/rings/padics/meson.build | 28 +++++++++++++++ src/sage/rings/polynomial/meson.build | 29 +++++++++++++++ src/sage/rings/polynomial/pbori/meson.build | 1 + src/sage/rings/polynomial/weil/meson.build | 1 + src/sage/structure/meson.build | 16 +++++++++ src/sage/symbolic/meson.build | 4 +++ 21 files changed, 211 insertions(+), 1 deletion(-) diff --git a/generate-meson.py b/generate-meson.py index 9a4bed7a73c..1bcb7fc3871 100644 --- a/generate-meson.py +++ b/generate-meson.py @@ -25,7 +25,7 @@ def run(folder: Path): return folder_rel_to_src = folder.relative_to('src') - python_files = sorted(list(folder.glob('*.py'))) + python_files = sorted(list(folder.glob('*.py')) + list(folder.glob('*.pxd')) + list(folder.glob('*.h'))) cython_files = sorted(list(folder.glob('*.pyx'))) diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build index 1387e5246f6..8bcab22277f 100644 --- a/src/sage/arith/meson.build +++ b/src/sage/arith/meson.build @@ -1,7 +1,14 @@ py.install_sources( 'all.py', 'all__sagemath_objects.py', + 'constants.pxd', + 'functions.pxd', + 'long.pxd', 'misc.py', + 'multi_modular.pxd', + 'numerical_approx.pxd', + 'power.pxd', + 'rational_reconstruction.pxd', subdir: 'sage/arith', ) diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build index 3653d0cfe0b..b4b83289127 100644 --- a/src/sage/cpython/meson.build +++ b/src/sage/cpython/meson.build @@ -2,6 +2,20 @@ py.install_sources( '__init__.py', '_py2_random.py', 'all.py', + 'cython_metaclass.h', + 'cython_metaclass.pxd', + 'dict_del_by_value.pxd', + 'dict_internal.h', + 'getattr.pxd', + 'pycore_long.h', + 'pycore_long.pxd', + 'python_debug.h', + 'python_debug.pxd', + 'pyx_visit.h', + 'string.pxd', + 'string_impl.h', + 'type.pxd', + 'wrapperdescr.pxd', subdir: 'sage/cpython', ) diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index 17057e737df..125ec37304c 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -1,5 +1,11 @@ py.install_sources( 'all.py', + 'wrapper_cc.pxd', + 'wrapper_cdf.pxd', + 'wrapper_el.pxd', + 'wrapper_py.pxd', + 'wrapper_rdf.pxd', + 'wrapper_rr.pxd', subdir: 'sage/ext/interpreters', ) diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index e0f87b894c5..4615b24361e 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -1,5 +1,13 @@ py.install_sources( 'all__sagemath_objects.py', + 'ccobject.h', + 'cplusplus.pxd', + 'fast_callable.pxd', + 'fast_eval.pxd', + 'memory_allocator.pxd', + 'mod_int.h', + 'mod_int.pxd', + 'stdsage.pxd', subdir: 'sage/ext', ) diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index 55052e6d545..43b5b530fbd 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -1,6 +1,14 @@ py.install_sources( 'all.py', + 'boost_graph.pxd', + 'c_graph.pxd', + 'dense_graph.pxd', + 'graph_backends.pxd', 'overview.py', + 'sparse_graph.pxd', + 'static_dense_graph.pxd', + 'static_sparse_backend.pxd', + 'static_sparse_graph.pxd', subdir: 'sage/graphs/base', ) diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 6ed735ca46d..569049303ad 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -9,7 +9,11 @@ rw = declare_dependency( py.install_sources( 'all.py', 'all__sagemath_tdlib.py', + 'fast_digraph.pxd', 'modular_decomposition.py', + 'rankwidth.pxd', + 'tree_decomposition.pxd', + 'vertex_separation.pxd', subdir: 'sage/graphs/graph_decompositions', ) diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 40a95e7e590..a564f8f3d09 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -14,11 +14,16 @@ py.install_sources( 'all__sagemath_mcqd.py', 'all__sagemath_tdlib.py', 'bipartite_graph.py', + 'cliquer.pxd', + 'connectivity.pxd', + 'convexity_properties.pxd', 'digraph.py', 'digraph_generators.py', + 'distances_all_pairs.pxd', 'domination.py', 'dot2tex_utils.py', 'generic_graph.py', + 'generic_graph_pyx.pxd', 'graph.py', 'graph_database.py', 'graph_editor.py', @@ -29,13 +34,17 @@ py.install_sources( 'graph_plot.py', 'graph_plot_js.py', 'hypergraph_generators.py', + 'independent_sets.pxd', 'isgci.py', 'lovasz_theta.py', + 'mcqd.pxd', 'orientations.py', 'partial_cube.py', 'pq_trees.py', 'print_graphs.py', 'schnyder.py', + 'traversals.pxd', + 'trees.pxd', 'tutte_polynomial.py', subdir: 'sage/graphs', ) diff --git a/src/sage/libs/singular/meson.build b/src/sage/libs/singular/meson.build index 9dad471f9b8..1a7037adaa5 100644 --- a/src/sage/libs/singular/meson.build +++ b/src/sage/libs/singular/meson.build @@ -1,6 +1,12 @@ py.install_sources( '__init__.py', + 'decl.pxd', + 'function.pxd', 'function_factory.py', + 'groebner_strategy.pxd', + 'polynomial.pxd', + 'ring.pxd', + 'singular.pxd', 'standard_options.py', subdir: 'sage/libs/singular', ) diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index 066990166db..27e76f59025 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -5,10 +5,15 @@ py.install_sources( 'all__sagemath_environment.py', 'all__sagemath_objects.py', 'all__sagemath_repl.py', + 'allocator.pxd', 'banner.py', 'benchmark.py', + 'binary_tree.pxd', 'bindable_class.py', + 'c3_controlled.pxd', + 'cachefunc.pxd', 'call.py', + 'classcall_metaclass.pxd', 'classgraph.py', 'compat.py', 'converting_dict.py', @@ -21,25 +26,32 @@ py.install_sources( 'edit_module.py', 'element_with_label.py', 'explain_pickle.py', + 'fast_methods.pxd', 'flatten.py', 'func_persist.py', + 'function_mangling.pxd', 'functional.py', 'gperftools.py', 'html.py', + 'inherit_comparison.pxd', 'inline_fortran.py', 'latex.py', 'latex_macros.py', 'latex_standalone.py', 'lazy_format.py', 'lazy_import_cache.py', + 'lazy_list.pxd', + 'lazy_string.pxd', 'map_threaded.py', 'mathml.py', 'messaging.py', 'method_decorator.py', 'misc.py', + 'misc_c.pxd', 'mrange.py', 'multireplace.py', 'namespace_package.py', + 'nested_class.pxd', 'object_multiplexer.py', 'package.py', 'package_dir.py', @@ -49,6 +61,7 @@ py.install_sources( 'proof.py', 'python.py', 'random_testing.py', + 'randstate.pxd', 'remote_file.py', 'replace_dot_all.py', 'repr.py', @@ -60,6 +73,7 @@ py.install_sources( 'sagedoc.py', 'sagedoc_conf.py', 'sageinspect.py', + 'search.pxd', 'sh.py', 'sphinxify.py', 'superseded.py', @@ -72,6 +86,7 @@ py.install_sources( 'unknown.py', 'verbose.py', 'viewer.py', + 'weak_dict.pxd', subdir: 'sage/misc', ) diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build index f438e735f3f..65d9d870063 100644 --- a/src/sage/rings/convert/meson.build +++ b/src/sage/rings/convert/meson.build @@ -1,5 +1,6 @@ py.install_sources( 'all.py', + 'mpfi.pxd', subdir: 'sage/rings/convert', ) diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build index 4db4db3575d..c1935bab281 100644 --- a/src/sage/rings/finite_rings/meson.build +++ b/src/sage/rings/finite_rings/meson.build @@ -1,15 +1,27 @@ py.install_sources( 'all.py', 'conway_polynomials.py', + 'element_base.pxd', + 'element_givaro.pxd', + 'element_ntl_gf2e.pxd', + 'element_pari_ffelt.pxd', + 'finite_field_base.pxd', 'finite_field_constructor.py', 'finite_field_givaro.py', 'finite_field_ntl_gf2e.py', 'finite_field_pari_ffelt.py', 'finite_field_prime_modn.py', 'galois_group.py', + 'hom_finite_field.pxd', + 'hom_finite_field_givaro.pxd', + 'hom_prime_finite_field.pxd', 'homset.py', + 'integer_mod.pxd', + 'integer_mod_limits.h', 'integer_mod_ring.py', 'maps_finite_field.py', + 'residue_field.pxd', + 'stdint.pxd', subdir: 'sage/rings/finite_rings', ) diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build index 954c446bd57..501d28f8015 100644 --- a/src/sage/rings/function_field/meson.build +++ b/src/sage/rings/function_field/meson.build @@ -6,6 +6,7 @@ py.install_sources( 'derivations_rational.py', 'differential.py', 'divisor.py', + 'element.pxd', 'extensions.py', 'function_field.py', 'function_field_polymod.py', diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 63438447097..7d6a54781ab 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -6,6 +6,7 @@ pthread = declare_dependency( py.install_sources( '__init__.py', + 'abc.pxd', 'algebraic_closure_finite_field.py', 'all.py', 'all__sagemath_categories.py', @@ -15,36 +16,70 @@ py.install_sources( 'cfinite_sequence.py', 'cif.py', 'commutative_algebra.py', + 'complex_arb.pxd', + 'complex_conversion.pxd', + 'complex_double.pxd', + 'complex_interval.pxd', 'complex_interval_field.py', + 'complex_mpc.pxd', + 'complex_mpfr.pxd', 'continued_fraction.py', 'continued_fraction_gosper.py', 'derivation.py', + 'fast_arith.pxd', 'fraction_field.py', + 'fraction_field_FpT.pxd', 'generic.py', 'homset.py', 'ideal.py', 'ideal_monoid.py', 'imaginary_unit.py', 'infinity.py', + 'integer.pxd', + 'integer_fake.h', + 'integer_fake.pxd', + 'integer_ring.pxd', 'laurent_series_ring.py', + 'laurent_series_ring_element.pxd', 'lazy_series.py', 'lazy_series_ring.py', 'localization.py', 'monomials.py', + 'morphism.pxd', 'multi_power_series_ring.py', 'multi_power_series_ring_element.py', 'numbers_abc.py', 'pari_ring.py', + 'power_series_mpoly.pxd', + 'power_series_pari.pxd', + 'power_series_poly.pxd', 'power_series_ring.py', + 'power_series_ring_element.pxd', 'puiseux_series_ring.py', + 'puiseux_series_ring_element.pxd', 'qqbar.py', 'qqbar_decorators.py', 'quotient_ring.py', 'quotient_ring_element.py', + 'rational.pxd', 'rational_field.py', + 'real_arb.pxd', + 'real_double.pxd', + 'real_double_element_gsl.pxd', 'real_field.py', + 'real_lazy.pxd', + 'real_mpfi.pxd', + 'real_mpfr.pxd', + 'ring.pxd', + 'ring_extension.pxd', + 'ring_extension_conversion.pxd', + 'ring_extension_element.pxd', 'ring_extension_homset.py', + 'ring_extension_morphism.pxd', + 'sum_of_squares.pxd', 'tate_algebra.py', + 'tate_algebra_element.pxd', + 'tate_algebra_ideal.pxd', 'tests.py', 'universal_cyclotomic_field.py', subdir: 'sage/rings', diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index 032f1c3321d..da05baead7b 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -8,6 +8,10 @@ py.install_sources( 'maps.py', 'morphism.py', 'number_field.py', + 'number_field_base.pxd', + 'number_field_element.pxd', + 'number_field_element_base.pxd', + 'number_field_element_quadratic.pxd', 'number_field_ideal.py', 'number_field_ideal_rel.py', 'number_field_rel.py', @@ -16,6 +20,7 @@ py.install_sources( 'small_primes_of_degree_one.py', 'splitting_field.py', 'structure.py', + 'totallyreal_data.pxd', 'totallyreal_phc.py', 'totallyreal_rel.py', 'unit_group.py', diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index bd69f694ce8..b59328f5271 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -1,20 +1,48 @@ py.install_sources( 'all.py', + 'common_conversion.pxd', 'eisenstein_extension_generic.py', 'factory.py', 'generic_nodes.py', 'lattice_precision.py', 'local_generic.py', + 'local_generic_element.pxd', 'misc.py', + 'morphism.pxd', + 'padic_ZZ_pX_CA_element.pxd', + 'padic_ZZ_pX_CR_element.pxd', + 'padic_ZZ_pX_FM_element.pxd', + 'padic_ZZ_pX_element.pxd', 'padic_base_generic.py', 'padic_base_leaves.py', + 'padic_capped_absolute_element.pxd', + 'padic_capped_relative_element.pxd', + 'padic_ext_element.pxd', 'padic_extension_generic.py', 'padic_extension_leaves.py', + 'padic_fixed_mod_element.pxd', + 'padic_floating_point_element.pxd', 'padic_generic.py', + 'padic_generic_element.pxd', 'padic_lattice_element.py', + 'padic_printing.pxd', + 'padic_relaxed_element.pxd', + 'padic_relaxed_errors.pxd', 'padic_valuation.py', + 'pow_computer.pxd', + 'pow_computer_ext.pxd', + 'pow_computer_flint.pxd', + 'pow_computer_relative.pxd', 'precision_error.py', + 'qadic_flint_CA.pxd', + 'qadic_flint_CR.pxd', + 'qadic_flint_FM.pxd', + 'qadic_flint_FP.pxd', 'relative_extension_leaves.py', + 'relative_ramified_CA.pxd', + 'relative_ramified_CR.pxd', + 'relative_ramified_FM.pxd', + 'relative_ramified_FP.pxd', 'tests.py', 'tutorial.py', 'unramified_extension_generic.py', diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index 1430321ca38..3566bc62a9a 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -1,35 +1,64 @@ py.install_sources( 'all.py', 'binary_form_reduce.py', + 'commutative_polynomial.pxd', 'complex_roots.py', 'convolution.py', + 'evaluation.pxd', + 'evaluation_flint.pxd', + 'evaluation_ntl.pxd', 'flatten.py', 'groebner_fan.py', 'ideal.py', 'infinite_polynomial_element.py', 'infinite_polynomial_ring.py', 'integer_valued_polynomials.py', + 'laurent_polynomial.pxd', 'laurent_polynomial_ideal.py', + 'laurent_polynomial_mpair.pxd', 'laurent_polynomial_ring.py', 'laurent_polynomial_ring_base.py', 'msolve.py', + 'multi_polynomial.pxd', 'multi_polynomial_element.py', 'multi_polynomial_ideal.py', + 'multi_polynomial_ideal_libsingular.pxd', + 'multi_polynomial_libsingular.pxd', 'multi_polynomial_ring.py', + 'multi_polynomial_ring_base.pxd', 'multi_polynomial_sequence.py', 'omega.py', 'ore_function_element.py', 'ore_function_field.py', + 'ore_polynomial_element.pxd', 'ore_polynomial_ring.py', + 'plural.pxd', + 'polydict.pxd', + 'polynomial_compiled.pxd', + 'polynomial_complex_arb.pxd', + 'polynomial_element.pxd', 'polynomial_element_generic.py', 'polynomial_fateman.py', + 'polynomial_gf2x.pxd', + 'polynomial_integer_dense_flint.pxd', + 'polynomial_integer_dense_ntl.pxd', + 'polynomial_modn_dense_ntl.pxd', 'polynomial_quotient_ring.py', 'polynomial_quotient_ring_element.py', + 'polynomial_rational_flint.pxd', 'polynomial_ring.py', 'polynomial_ring_constructor.py', + 'polynomial_ring_homomorphism.pxd', 'polynomial_singular_interface.py', + 'polynomial_zmod_flint.pxd', + 'polynomial_zz_pex.pxd', + 'real_roots.pxd', + 'skew_polynomial_element.pxd', + 'skew_polynomial_finite_field.pxd', + 'skew_polynomial_finite_order.pxd', 'skew_polynomial_ring.py', 'symmetric_ideal.py', + 'symmetric_reduction.pxd', 'term_order.py', 'toy_buchberger.py', 'toy_d_basis.py', diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index 56482234dda..ed61f857d0f 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -22,6 +22,7 @@ py.install_sources( 'll.py', 'nf.py', 'parallel.py', + 'pbori.pxd', 'randompoly.py', 'rank.py', 'specialsets.py', diff --git a/src/sage/rings/polynomial/weil/meson.build b/src/sage/rings/polynomial/weil/meson.build index ad617697b46..5db5abe197e 100644 --- a/src/sage/rings/polynomial/weil/meson.build +++ b/src/sage/rings/polynomial/weil/meson.build @@ -1,5 +1,6 @@ py.install_sources( 'all.py', + 'power_sums.h', subdir: 'sage/rings/polynomial/weil', ) diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index 280b6743e42..a1500cbbb8b 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -1,16 +1,32 @@ py.install_sources( '__init__.py', 'all.py', + 'category_object.pxd', + 'coerce.pxd', + 'coerce_actions.pxd', + 'coerce_dict.pxd', 'coerce_exceptions.py', + 'coerce_maps.pxd', + 'debug_options.pxd', 'dynamic_class.py', + 'element.pxd', + 'element_wrapper.pxd', 'factorization.py', 'factorization_integer.py', 'formal_sum.py', 'gens_py.py', 'global_options.py', 'indexed_generators.py', + 'list_clone.pxd', 'list_clone_timings.py', + 'mutability.pxd', 'nonexact.py', + 'parent.pxd', + 'parent_base.pxd', + 'parent_gens.pxd', + 'parent_old.pxd', + 'richcmp.pxd', + 'sage_object.pxd', 'sage_object_test.py', 'sequence.py', 'set_factories.py', diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index 5c24532bda4..2acc0fdf825 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -9,14 +9,18 @@ py.install_sources( 'callable.py', 'complexity_measures.py', 'constants.py', + 'expression.pxd', 'expression_conversion_algebraic.py', 'expression_conversion_sympy.py', 'expression_conversions.py', + 'function.pxd', 'function_factory.py', 'maxima_wrapper.py', 'operators.py', + 'pynac_wrap.h', 'random_tests.py', 'relation.py', + 'ring.pxd', 'subring.py', 'symbols.py', 'symengine.py', From b78557d1db4fb2b856c733429317ca197780a663 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 20 Nov 2023 02:18:47 +0000 Subject: [PATCH 082/229] correctly specify version --- meson.build | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/meson.build b/meson.build index aa8c8552f15..b5ef4dc0d06 100644 --- a/meson.build +++ b/meson.build @@ -1,7 +1,7 @@ project( 'SageMath', ['c', 'cpp', 'cython'], - version: '10.2.beta8', + version: files('src/VERSION.txt'), license: 'GPL v3', meson_version: '>= 1.2.0', ) @@ -17,15 +17,6 @@ cc = meson.get_compiler('c') cpp = meson.get_compiler('cpp') cython = meson.get_compiler('cython') -test( - 'import', - py, - args: [ - '-c', - 'from sage.categories.category import Category; print(Category)', - ], - ) - # py_with_pytest = py_module.find_installation(required: false, modules: ['pytest']) # if py_with_pytest.found() # test( From 353b9899825ed98df3312d94f7d3758ff23f9c8a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 20 Nov 2023 02:46:12 +0000 Subject: [PATCH 083/229] Properly set SAGE_SHARE to datadir, and warn if cremona is not installed --- pkgs/sage-conf/_sage_conf/_conf.py.in | 1 + src/sage/meson.build | 12 ++++++++++++ 2 files changed, 13 insertions(+) diff --git a/pkgs/sage-conf/_sage_conf/_conf.py.in b/pkgs/sage-conf/_sage_conf/_conf.py.in index 87b27ca05cb..d94472ec467 100644 --- a/pkgs/sage-conf/_sage_conf/_conf.py.in +++ b/pkgs/sage-conf/_sage_conf/_conf.py.in @@ -8,6 +8,7 @@ VERSION = "@PACKAGE_VERSION@" # to it. SAGE_LOCAL = "@prefix@" SAGE_ROOT = "@SAGE_ROOT@" +SAGE_SHARE = "@SAGE_SHARE@" # The path to the standalone maxima executable. MAXIMA = "@SAGE_MAXIMA@".replace('${prefix}', SAGE_LOCAL) diff --git a/src/sage/meson.build b/src/sage/meson.build index f3013186314..8701d7f7a0b 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -1,9 +1,21 @@ +fs = import('fs') sage_install_dir = py.get_install_dir() / 'sage' # Generate the configuration file conf_data = configuration_data() conf_data.set('PACKAGE_VERSION', '1.2.3') conf_data.set('SAGE_ROOT', meson.current_source_dir() / '..' / '..') +# We use Python's prefix here to make it work with conda +prefix = py.get_variable('prefix', '') +conf_data.set('prefix', prefix) +datadir = fs.expanduser(get_option('datadir')) +if not fs.is_absolute(datadir) + datadir = prefix / datadir +endif +conf_data.set('SAGE_SHARE', datadir) +if not fs.exists(datadir / 'cremona') + message('Warning: The specified datadir does not contain the necessary Cremona database. Either specify a different datadir or specify a correct the correct path via the environment variable SAGE_SHARE during runtime.') +endif conf_data.set('SAGE_MAXIMA', maxima.full_path()) # Conda's ecl does not have any problems with Maxima, so nothing needs to be set here: conf_data.set('SAGE_MAXIMA_FAS', '') From 46dbc4f357b66767b52ce53b6e43cd2a9d180598 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 20 Nov 2023 02:51:17 +0000 Subject: [PATCH 084/229] Install more headers --- src/sage/libs/arb/meson.build | 15 +++++++ src/sage/libs/coxeter3/meson.build | 2 + src/sage/libs/eclib/meson.build | 3 ++ src/sage/libs/flint/meson.build | 28 +++++++++++++ src/sage/libs/gap/meson.build | 3 ++ src/sage/libs/giac/meson.build | 2 + src/sage/libs/glpk/meson.build | 5 +++ src/sage/libs/gmp/meson.build | 11 +++++ src/sage/libs/gsl/meson.build | 64 ++++++++++++++++++++++++++++++ src/sage/libs/lcalc/meson.build | 2 + src/sage/libs/linbox/meson.build | 5 +++ src/sage/libs/meson.build | 7 ++++ src/sage/libs/mpmath/meson.build | 1 + src/sage/libs/ntl/meson.build | 42 ++++++++++++++++++++ src/sage/libs/pari/meson.build | 6 +++ 15 files changed, 196 insertions(+) diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index 8fae1826015..2a2d52dad41 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -1,5 +1,20 @@ py.install_sources( '__init__.py', + 'acb.pxd', + 'acb_calc.pxd', + 'acb_elliptic.pxd', + 'acb_hypgeom.pxd', + 'acb_mat.pxd', + 'acb_modular.pxd', + 'acb_poly.pxd', + 'arb.pxd', + 'arb_fmpz_poly.pxd', + 'arb_hypgeom.pxd', + 'arb_wrap.h', + 'arf.pxd', + 'bernoulli.pxd', + 'mag.pxd', + 'types.pxd', subdir: 'sage/libs/arb', ) diff --git a/src/sage/libs/coxeter3/meson.build b/src/sage/libs/coxeter3/meson.build index 8d9ea2019dc..ea75996ddb7 100644 --- a/src/sage/libs/coxeter3/meson.build +++ b/src/sage/libs/coxeter3/meson.build @@ -2,7 +2,9 @@ coxeter3 = cc.find_library('coxeter3', required: false) py.install_sources( '__init__.py', 'all__sagemath_coxeter3.py', + 'coxeter.pxd', 'coxeter_group.py', + 'decl.pxd', subdir: 'sage/libs/coxeter3', ) diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index 81efc60d663..4cdca5b7c42 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -2,7 +2,10 @@ py.install_sources( '__init__.py', 'all.py', 'constructor.py', + 'homspace.pxd', 'interface.py', + 'mat.pxd', + 'newforms.pxd', subdir: 'sage/libs/eclib', ) diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index 3411fea4911..ab3a64936a3 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -1,5 +1,33 @@ py.install_sources( '__init__.py', + 'arith.pxd', + 'flint.pxd', + 'flint_ntl_wrap.h', + 'flint_wrap.h', + 'fmpq.pxd', + 'fmpq_mat.pxd', + 'fmpq_poly.pxd', + 'fmpz.pxd', + 'fmpz_factor.pxd', + 'fmpz_mat.pxd', + 'fmpz_mod.pxd', + 'fmpz_mod_poly.pxd', + 'fmpz_poly.pxd', + 'fmpz_poly_mat.pxd', + 'fmpz_poly_q.pxd', + 'fmpz_vec.pxd', + 'fq.pxd', + 'fq_nmod.pxd', + 'nmod_poly.pxd', + 'nmod_vec.pxd', + 'ntl_interface.pxd', + 'padic.pxd', + 'padic_poly.pxd', + 'qadic.pxd', + 'qsieve.pxd', + 'thread_pool.pxd', + 'types.pxd', + 'ulong_extras.pxd', subdir: 'sage/libs/flint', ) diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index 5214a0ced62..b917e5c7bee 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -3,12 +3,15 @@ py.install_sources( 'all_documented_functions.py', 'assigned_names.py', 'context_managers.py', + 'element.pxd', 'gap_functions.py', 'gap_globals.py', + 'gap_includes.pxd', 'operations.py', 'saved_workspace.py', 'test.py', 'test_long.py', + 'util.pxd', subdir: 'sage/libs/gap', ) diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index e18c79d5dce..f4003c4a9c7 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -6,6 +6,8 @@ giac = declare_dependency( py.install_sources( '__init__.py', + 'giac.pxd', + 'misc.h', subdir: 'sage/libs/giac', ) diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build index adbeec10c85..080e12bd275 100644 --- a/src/sage/libs/glpk/meson.build +++ b/src/sage/libs/glpk/meson.build @@ -1,5 +1,10 @@ py.install_sources( '__init__.py', + 'constants.pxd', + 'env.pxd', + 'graph.pxd', + 'lp.pxd', + 'types.pxd', subdir: 'sage/libs/glpk', ) diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 35a3a5af964..7eaa2b4f586 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -1,5 +1,16 @@ py.install_sources( '__init__.py', + 'all.pxd', + 'binop.pxd', + 'misc.pxd', + 'mpf.pxd', + 'mpn.pxd', + 'mpq.pxd', + 'mpz.pxd', + 'pylong.pxd', + 'random.pxd', + 'randomize.pxd', + 'types.pxd', subdir: 'sage/libs/gmp', ) diff --git a/src/sage/libs/gsl/meson.build b/src/sage/libs/gsl/meson.build index fb85c2f0026..39d674466f3 100644 --- a/src/sage/libs/gsl/meson.build +++ b/src/sage/libs/gsl/meson.build @@ -1,5 +1,69 @@ py.install_sources( '__init__.py', + 'airy.pxd', + 'all.pxd', + 'array.pxd', + 'bessel.pxd', + 'blas.pxd', + 'blas_types.pxd', + 'block.pxd', + 'chebyshev.pxd', + 'clausen.pxd', + 'combination.pxd', + 'complex.pxd', + 'coulomb.pxd', + 'coupling.pxd', + 'dawson.pxd', + 'debye.pxd', + 'dilog.pxd', + 'eigen.pxd', + 'elementary.pxd', + 'ellint.pxd', + 'elljac.pxd', + 'erf.pxd', + 'errno.pxd', + 'exp.pxd', + 'expint.pxd', + 'fermi_dirac.pxd', + 'fft.pxd', + 'fit.pxd', + 'gamma.pxd', + 'gegenbauer.pxd', + 'histogram.pxd', + 'hyperg.pxd', + 'integration.pxd', + 'interp.pxd', + 'laguerre.pxd', + 'lambert.pxd', + 'legendre.pxd', + 'linalg.pxd', + 'log.pxd', + 'math.pxd', + 'matrix.pxd', + 'matrix_complex.pxd', + 'min.pxd', + 'monte.pxd', + 'ntuple.pxd', + 'odeiv.pxd', + 'permutation.pxd', + 'poly.pxd', + 'pow_int.pxd', + 'psi.pxd', + 'qrng.pxd', + 'random.pxd', + 'rng.pxd', + 'roots.pxd', + 'sort.pxd', + 'statistics.pxd', + 'sum.pxd', + 'synchrotron.pxd', + 'transport.pxd', + 'trig.pxd', + 'types.pxd', + 'vector.pxd', + 'vector_complex.pxd', + 'wavelet.pxd', + 'zeta.pxd', subdir: 'sage/libs/gsl', ) diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build index 6d170655920..e70ed610108 100644 --- a/src/sage/libs/lcalc/meson.build +++ b/src/sage/libs/lcalc/meson.build @@ -1,5 +1,7 @@ py.install_sources( '__init__.py', + 'lcalc_Lfunction.pxd', + 'lcalc_sage.h', subdir: 'sage/libs/lcalc', ) diff --git a/src/sage/libs/linbox/meson.build b/src/sage/libs/linbox/meson.build index a18e7799cd7..48b092ed5d8 100644 --- a/src/sage/libs/linbox/meson.build +++ b/src/sage/libs/linbox/meson.build @@ -1,5 +1,10 @@ py.install_sources( '__init__.py', + 'conversion.pxd', + 'fflas.pxd', + 'givaro.pxd', + 'linbox.pxd', + 'linbox_flint_interface.pxd', subdir: 'sage/libs/linbox', ) diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 30c2aa4fcc6..6833380ac11 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -12,6 +12,13 @@ py.install_sources( 'all__sagemath_meataxe.py', 'all__sagemath_objects.py', 'all__sagemath_sirocco.py', + 'ecl.pxd', + 'eclsig.h', + 'gmpxx.pxd', + 'iml.pxd', + 'm4ri.pxd', + 'm4rie.pxd', + 'meataxe.pxd', subdir: 'sage/libs', ) diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build index edd7851e4f6..7bd5c737668 100644 --- a/src/sage/libs/mpmath/meson.build +++ b/src/sage/libs/mpmath/meson.build @@ -1,6 +1,7 @@ py.install_sources( '__init__.py', 'all.py', + 'utils.pxd', subdir: 'sage/libs/mpmath', ) diff --git a/src/sage/libs/ntl/meson.build b/src/sage/libs/ntl/meson.build index 8f1794a2f7b..cf4b30ad55a 100644 --- a/src/sage/libs/ntl/meson.build +++ b/src/sage/libs/ntl/meson.build @@ -1,6 +1,48 @@ py.install_sources( + 'GF2.pxd', + 'GF2E.pxd', + 'GF2EX.pxd', + 'GF2X.pxd', + 'ZZ.pxd', + 'ZZX.pxd', + 'ZZ_p.pxd', + 'ZZ_pE.pxd', + 'ZZ_pEX.pxd', + 'ZZ_pX.pxd', '__init__.py', 'all.py', + 'conversion.pxd', + 'convert.pxd', + 'lzz_p.pxd', + 'lzz_pX.pxd', + 'mat_GF2.pxd', + 'mat_GF2E.pxd', + 'mat_ZZ.pxd', + 'ntl_GF2.pxd', + 'ntl_GF2E.pxd', + 'ntl_GF2EContext.pxd', + 'ntl_GF2EX.pxd', + 'ntl_GF2X.pxd', + 'ntl_ZZ.pxd', + 'ntl_ZZX.pxd', + 'ntl_ZZ_p.pxd', + 'ntl_ZZ_pContext.pxd', + 'ntl_ZZ_pE.pxd', + 'ntl_ZZ_pEContext.pxd', + 'ntl_ZZ_pEX.pxd', + 'ntl_ZZ_pX.pxd', + 'ntl_lzz_p.pxd', + 'ntl_lzz_pContext.pxd', + 'ntl_lzz_pX.pxd', + 'ntl_mat_GF2.pxd', + 'ntl_mat_GF2E.pxd', + 'ntl_mat_ZZ.pxd', + 'ntl_tools.pxd', + 'ntlwrap.h', + 'ntlwrap_impl.h', + 'types.pxd', + 'vec_GF2.pxd', + 'vec_GF2E.pxd', subdir: 'sage/libs/ntl', ) diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 3250e59b85a..1ba3f5e37e2 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -1,6 +1,12 @@ py.install_sources( '__init__.py', 'all.py', + 'convert_flint.pxd', + 'convert_gmp.pxd', + 'convert_sage.pxd', + 'convert_sage_complex_double.pxd', + 'convert_sage_real_double.pxd', + 'misc.pxd', 'tests.py', subdir: 'sage/libs/pari', ) From d3289132850ffe32c11c6c462cf63f72963a262c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 24 Nov 2023 10:09:35 +0000 Subject: [PATCH 085/229] Readd init files --- src/sage/__init__.py | 2 ++ src/sage/algebras/__init__.py | 1 + src/sage/algebras/finite_dimensional_algebras/__init__.py | 1 + src/sage/algebras/fusion_rings/__init__.py | 1 + src/sage/algebras/hecke_algebras/__init__.py | 1 + src/sage/algebras/letterplace/__init__.py | 1 + src/sage/algebras/lie_algebras/__init__.py | 1 + src/sage/algebras/lie_conformal_algebras/__init__.py | 1 + src/sage/algebras/quantum_groups/__init__.py | 1 + src/sage/algebras/quatalg/__init__.py | 1 + src/sage/algebras/steenrod/__init__.py | 1 + src/sage/arith/__init__.py | 1 + src/sage/calculus/__init__.py | 1 + src/sage/calculus/transforms/__init__.py | 1 + src/sage/categories/__init__.py | 0 src/sage/categories/examples/__init__.py | 1 + src/sage/coding/__init__.py | 1 + src/sage/coding/codecan/__init__.py | 1 + src/sage/coding/guruswami_sudan/__init__.py | 1 + src/sage/coding/source_coding/__init__.py | 1 + src/sage/combinat/__init__.py | 1 + src/sage/combinat/chas/__init__.py | 1 + src/sage/combinat/cluster_algebra_quiver/__init__.py | 1 + src/sage/combinat/crystals/__init__.py | 1 + src/sage/combinat/designs/__init__.py | 1 + src/sage/combinat/matrices/__init__.py | 1 + src/sage/combinat/ncsf_qsym/__init__.py | 1 + src/sage/combinat/ncsym/__init__.py | 1 + src/sage/combinat/path_tableaux/__init__.py | 1 + src/sage/combinat/posets/__init__.py | 1 + src/sage/combinat/rigged_configurations/__init__.py | 1 + src/sage/combinat/root_system/__init__.py | 1 + src/sage/combinat/sf/__init__.py | 1 + src/sage/combinat/species/__init__.py | 1 + src/sage/combinat/words/__init__.py | 1 + src/sage/crypto/block_cipher/__init__.py | 1 + src/sage/crypto/public_key/__init__.py | 1 + src/sage/data_structures/__init__.py | 1 + src/sage/databases/__init__.py | 1 + src/sage/dynamics/__init__.py | 1 + src/sage/dynamics/arithmetic_dynamics/__init__.py | 1 + src/sage/dynamics/cellular_automata/__init__.py | 1 + src/sage/dynamics/complex_dynamics/__init__.py | 1 + src/sage/ext/__init__.py | 1 + src/sage/functions/__init__.py | 1 + src/sage/game_theory/__init__.py | 1 + src/sage/games/__init__.py | 1 + src/sage/geometry/__init__.py | 1 + src/sage/geometry/hyperbolic_space/__init__.py | 1 + src/sage/geometry/hyperplane_arrangement/__init__.py | 1 + src/sage/geometry/polyhedron/__init__.py | 1 + .../geometry/polyhedron/combinatorial_polyhedron/__init__.py | 1 + src/sage/geometry/polyhedron/modules/__init__.py | 1 + src/sage/geometry/riemannian_manifolds/__init__.py | 1 + src/sage/geometry/triangulation/__init__.py | 1 + src/sage/graphs/__init__.py | 1 + src/sage/graphs/base/__init__.py | 1 + src/sage/graphs/generators/__init__.py | 1 + src/sage/graphs/graph_decompositions/__init__.py | 1 + src/sage/groups/__init__.py | 1 + src/sage/groups/abelian_gps/__init__.py | 1 + src/sage/groups/additive_abelian/__init__.py | 1 + src/sage/groups/affine_gps/__init__.py | 1 + src/sage/groups/lie_gps/__init__.py | 1 + src/sage/groups/matrix_gps/__init__.py | 1 + src/sage/groups/misc_gps/__init__.py | 1 + src/sage/groups/perm_gps/__init__.py | 1 + src/sage/groups/perm_gps/partn_ref/__init__.py | 1 + src/sage/groups/perm_gps/partn_ref2/__init__.py | 1 + src/sage/groups/semimonomial_transformations/__init__.py | 1 + src/sage/homology/__init__.py | 1 + src/sage/interacts/__init__.py | 1 + src/sage/interfaces/__init__.py | 1 + src/sage/knots/__init__.py | 1 + src/sage/lfunctions/__init__.py | 1 + src/sage/libs/__init__.py | 0 src/sage/libs/gap/__init__.py | 0 src/sage/libs/mpc/__init__.py | 1 + src/sage/libs/mpfi/__init__.py | 1 + src/sage/libs/mpfr/__init__.py | 1 + src/sage/libs/polybori/__init__.py | 1 + src/sage/logic/__init__.py | 1 + src/sage/manifolds/__init__.py | 1 + src/sage/manifolds/differentiable/__init__.py | 1 + src/sage/manifolds/differentiable/examples/__init__.py | 1 + src/sage/manifolds/subsets/__init__.py | 1 + src/sage/matrix/__init__.py | 1 + src/sage/matroids/__init__.py | 1 + src/sage/misc/__init__.py | 0 src/sage/modular/__init__.py | 1 + src/sage/modular/abvar/__init__.py | 1 + src/sage/modular/arithgroup/__init__.py | 1 + src/sage/modular/btquotients/__init__.py | 1 + src/sage/modular/hecke/__init__.py | 1 + src/sage/modular/local_comp/__init__.py | 1 + src/sage/modular/modform/__init__.py | 1 + src/sage/modular/modform_hecketriangle/__init__.py | 1 + src/sage/modular/modsym/__init__.py | 1 + src/sage/modular/overconvergent/__init__.py | 1 + src/sage/modular/pollack_stevens/__init__.py | 1 + src/sage/modular/quasimodform/__init__.py | 1 + src/sage/modular/quatalg/__init__.py | 1 + src/sage/modular/ssmod/__init__.py | 1 + src/sage/modules/__init__.py | 1 + src/sage/modules/fg_pid/__init__.py | 1 + src/sage/modules/fp_graded/__init__.py | 1 + src/sage/modules/fp_graded/steenrod/__init__.py | 1 + src/sage/modules/with_basis/__init__.py | 1 + src/sage/monoids/__init__.py | 1 + src/sage/numerical/__init__.py | 1 + src/sage/numerical/backends/__init__.py | 1 + src/sage/parallel/__init__.py | 1 + src/sage/plot/__init__.py | 1 + src/sage/plot/plot3d/__init__.py | 1 + src/sage/probability/__init__.py | 1 + src/sage/quadratic_forms/__init__.py | 1 + src/sage/quadratic_forms/genera/__init__.py | 1 + src/sage/quivers/__init__.py | 1 + src/sage/rings/__init__.py | 1 + src/sage/rings/asymptotic/__init__.py | 1 + src/sage/rings/convert/__init__.py | 1 + src/sage/rings/finite_rings/__init__.py | 1 + src/sage/rings/function_field/__init__.py | 1 + src/sage/rings/function_field/drinfeld_modules/__init__.py | 1 + src/sage/rings/invariants/__init__.py | 1 + src/sage/rings/number_field/__init__.py | 1 + src/sage/rings/padics/__init__.py | 1 + src/sage/rings/polynomial/__init__.py | 1 + src/sage/rings/polynomial/padics/__init__.py | 1 + src/sage/rings/polynomial/weil/__init__.py | 1 + src/sage/rings/semirings/__init__.py | 1 + src/sage/rings/valuation/__init__.py | 1 + src/sage/sandpiles/__init__.py | 1 + src/sage/sat/__init__.py | 1 + src/sage/schemes/__init__.py | 1 + src/sage/schemes/affine/__init__.py | 1 + src/sage/schemes/berkovich/__init__.py | 1 + src/sage/schemes/curves/__init__.py | 1 + src/sage/schemes/cyclic_covers/__init__.py | 1 + src/sage/schemes/elliptic_curves/__init__.py | 1 + src/sage/schemes/generic/__init__.py | 1 + src/sage/schemes/hyperelliptic_curves/__init__.py | 1 + src/sage/schemes/jacobians/__init__.py | 1 + src/sage/schemes/plane_conics/__init__.py | 1 + src/sage/schemes/plane_quartics/__init__.py | 1 + src/sage/schemes/product_projective/__init__.py | 1 + src/sage/schemes/projective/__init__.py | 1 + src/sage/schemes/riemann_surfaces/__init__.py | 1 + src/sage/schemes/toric/__init__.py | 1 + src/sage/schemes/toric/sheaf/__init__.py | 1 + src/sage/sets/__init__.py | 1 + src/sage/stats/__init__.py | 1 + src/sage/stats/distributions/__init__.py | 1 + src/sage/stats/hmm/__init__.py | 1 + src/sage/symbolic/__init__.py | 1 + src/sage/symbolic/integration/__init__.py | 1 + src/sage/tensor/__init__.py | 1 + src/sage/tensor/modules/__init__.py | 1 + src/sage/tests/books/__init__.py | 1 + src/sage/topology/__init__.py | 1 + src/sage/typeset/__init__.py | 1 + src/sage_setup/autogen/interpreters/__init__.py | 5 ----- 162 files changed, 158 insertions(+), 5 deletions(-) create mode 100644 src/sage/__init__.py create mode 100644 src/sage/algebras/__init__.py create mode 100644 src/sage/algebras/finite_dimensional_algebras/__init__.py create mode 100644 src/sage/algebras/fusion_rings/__init__.py create mode 100644 src/sage/algebras/hecke_algebras/__init__.py create mode 100644 src/sage/algebras/letterplace/__init__.py create mode 100644 src/sage/algebras/lie_algebras/__init__.py create mode 100644 src/sage/algebras/lie_conformal_algebras/__init__.py create mode 100644 src/sage/algebras/quantum_groups/__init__.py create mode 100644 src/sage/algebras/quatalg/__init__.py create mode 100644 src/sage/algebras/steenrod/__init__.py create mode 100644 src/sage/arith/__init__.py create mode 100644 src/sage/calculus/__init__.py create mode 100644 src/sage/calculus/transforms/__init__.py create mode 100644 src/sage/categories/__init__.py create mode 100644 src/sage/categories/examples/__init__.py create mode 100644 src/sage/coding/__init__.py create mode 100644 src/sage/coding/codecan/__init__.py create mode 100644 src/sage/coding/guruswami_sudan/__init__.py create mode 100644 src/sage/coding/source_coding/__init__.py create mode 100644 src/sage/combinat/__init__.py create mode 100644 src/sage/combinat/chas/__init__.py create mode 100644 src/sage/combinat/cluster_algebra_quiver/__init__.py create mode 100644 src/sage/combinat/crystals/__init__.py create mode 100644 src/sage/combinat/designs/__init__.py create mode 100644 src/sage/combinat/matrices/__init__.py create mode 100644 src/sage/combinat/ncsf_qsym/__init__.py create mode 100644 src/sage/combinat/ncsym/__init__.py create mode 100644 src/sage/combinat/path_tableaux/__init__.py create mode 100644 src/sage/combinat/posets/__init__.py create mode 100644 src/sage/combinat/rigged_configurations/__init__.py create mode 100644 src/sage/combinat/root_system/__init__.py create mode 100644 src/sage/combinat/sf/__init__.py create mode 100644 src/sage/combinat/species/__init__.py create mode 100644 src/sage/combinat/words/__init__.py create mode 100644 src/sage/crypto/block_cipher/__init__.py create mode 100644 src/sage/crypto/public_key/__init__.py create mode 100644 src/sage/data_structures/__init__.py create mode 100644 src/sage/databases/__init__.py create mode 100644 src/sage/dynamics/__init__.py create mode 100644 src/sage/dynamics/arithmetic_dynamics/__init__.py create mode 100644 src/sage/dynamics/cellular_automata/__init__.py create mode 100644 src/sage/dynamics/complex_dynamics/__init__.py create mode 100644 src/sage/ext/__init__.py create mode 100644 src/sage/functions/__init__.py create mode 100644 src/sage/game_theory/__init__.py create mode 100644 src/sage/games/__init__.py create mode 100644 src/sage/geometry/__init__.py create mode 100644 src/sage/geometry/hyperbolic_space/__init__.py create mode 100644 src/sage/geometry/hyperplane_arrangement/__init__.py create mode 100644 src/sage/geometry/polyhedron/__init__.py create mode 100644 src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py create mode 100644 src/sage/geometry/polyhedron/modules/__init__.py create mode 100644 src/sage/geometry/riemannian_manifolds/__init__.py create mode 100644 src/sage/geometry/triangulation/__init__.py create mode 100644 src/sage/graphs/__init__.py create mode 100644 src/sage/graphs/base/__init__.py create mode 100644 src/sage/graphs/generators/__init__.py create mode 100644 src/sage/graphs/graph_decompositions/__init__.py create mode 100644 src/sage/groups/__init__.py create mode 100644 src/sage/groups/abelian_gps/__init__.py create mode 100644 src/sage/groups/additive_abelian/__init__.py create mode 100644 src/sage/groups/affine_gps/__init__.py create mode 100644 src/sage/groups/lie_gps/__init__.py create mode 100644 src/sage/groups/matrix_gps/__init__.py create mode 100644 src/sage/groups/misc_gps/__init__.py create mode 100644 src/sage/groups/perm_gps/__init__.py create mode 100644 src/sage/groups/perm_gps/partn_ref/__init__.py create mode 100644 src/sage/groups/perm_gps/partn_ref2/__init__.py create mode 100644 src/sage/groups/semimonomial_transformations/__init__.py create mode 100644 src/sage/homology/__init__.py create mode 100644 src/sage/interacts/__init__.py create mode 100644 src/sage/interfaces/__init__.py create mode 100644 src/sage/knots/__init__.py create mode 100644 src/sage/lfunctions/__init__.py create mode 100644 src/sage/libs/__init__.py create mode 100644 src/sage/libs/gap/__init__.py create mode 100644 src/sage/libs/mpc/__init__.py create mode 100644 src/sage/libs/mpfi/__init__.py create mode 100644 src/sage/libs/mpfr/__init__.py create mode 100644 src/sage/libs/polybori/__init__.py create mode 100644 src/sage/logic/__init__.py create mode 100644 src/sage/manifolds/__init__.py create mode 100644 src/sage/manifolds/differentiable/__init__.py create mode 100644 src/sage/manifolds/differentiable/examples/__init__.py create mode 100644 src/sage/manifolds/subsets/__init__.py create mode 100644 src/sage/matrix/__init__.py create mode 100644 src/sage/matroids/__init__.py create mode 100644 src/sage/misc/__init__.py create mode 100644 src/sage/modular/__init__.py create mode 100644 src/sage/modular/abvar/__init__.py create mode 100644 src/sage/modular/arithgroup/__init__.py create mode 100644 src/sage/modular/btquotients/__init__.py create mode 100644 src/sage/modular/hecke/__init__.py create mode 100644 src/sage/modular/local_comp/__init__.py create mode 100644 src/sage/modular/modform/__init__.py create mode 100644 src/sage/modular/modform_hecketriangle/__init__.py create mode 100644 src/sage/modular/modsym/__init__.py create mode 100644 src/sage/modular/overconvergent/__init__.py create mode 100644 src/sage/modular/pollack_stevens/__init__.py create mode 100644 src/sage/modular/quasimodform/__init__.py create mode 100644 src/sage/modular/quatalg/__init__.py create mode 100644 src/sage/modular/ssmod/__init__.py create mode 100644 src/sage/modules/__init__.py create mode 100644 src/sage/modules/fg_pid/__init__.py create mode 100644 src/sage/modules/fp_graded/__init__.py create mode 100644 src/sage/modules/fp_graded/steenrod/__init__.py create mode 100644 src/sage/modules/with_basis/__init__.py create mode 100644 src/sage/monoids/__init__.py create mode 100644 src/sage/numerical/__init__.py create mode 100644 src/sage/numerical/backends/__init__.py create mode 100644 src/sage/parallel/__init__.py create mode 100644 src/sage/plot/__init__.py create mode 100644 src/sage/plot/plot3d/__init__.py create mode 100644 src/sage/probability/__init__.py create mode 100644 src/sage/quadratic_forms/__init__.py create mode 100644 src/sage/quadratic_forms/genera/__init__.py create mode 100644 src/sage/quivers/__init__.py create mode 100644 src/sage/rings/__init__.py create mode 100644 src/sage/rings/asymptotic/__init__.py create mode 100644 src/sage/rings/convert/__init__.py create mode 100644 src/sage/rings/finite_rings/__init__.py create mode 100644 src/sage/rings/function_field/__init__.py create mode 100644 src/sage/rings/function_field/drinfeld_modules/__init__.py create mode 100644 src/sage/rings/invariants/__init__.py create mode 100644 src/sage/rings/number_field/__init__.py create mode 100644 src/sage/rings/padics/__init__.py create mode 100644 src/sage/rings/polynomial/__init__.py create mode 100644 src/sage/rings/polynomial/padics/__init__.py create mode 100644 src/sage/rings/polynomial/weil/__init__.py create mode 100644 src/sage/rings/semirings/__init__.py create mode 100644 src/sage/rings/valuation/__init__.py create mode 100644 src/sage/sandpiles/__init__.py create mode 100644 src/sage/sat/__init__.py create mode 100644 src/sage/schemes/__init__.py create mode 100644 src/sage/schemes/affine/__init__.py create mode 100644 src/sage/schemes/berkovich/__init__.py create mode 100644 src/sage/schemes/curves/__init__.py create mode 100644 src/sage/schemes/cyclic_covers/__init__.py create mode 100644 src/sage/schemes/elliptic_curves/__init__.py create mode 100644 src/sage/schemes/generic/__init__.py create mode 100644 src/sage/schemes/hyperelliptic_curves/__init__.py create mode 100644 src/sage/schemes/jacobians/__init__.py create mode 100644 src/sage/schemes/plane_conics/__init__.py create mode 100644 src/sage/schemes/plane_quartics/__init__.py create mode 100644 src/sage/schemes/product_projective/__init__.py create mode 100644 src/sage/schemes/projective/__init__.py create mode 100644 src/sage/schemes/riemann_surfaces/__init__.py create mode 100644 src/sage/schemes/toric/__init__.py create mode 100644 src/sage/schemes/toric/sheaf/__init__.py create mode 100644 src/sage/sets/__init__.py create mode 100644 src/sage/stats/__init__.py create mode 100644 src/sage/stats/distributions/__init__.py create mode 100644 src/sage/stats/hmm/__init__.py create mode 100644 src/sage/symbolic/__init__.py create mode 100644 src/sage/symbolic/integration/__init__.py create mode 100644 src/sage/tensor/__init__.py create mode 100644 src/sage/tensor/modules/__init__.py create mode 100644 src/sage/tests/books/__init__.py create mode 100644 src/sage/topology/__init__.py create mode 100644 src/sage/typeset/__init__.py diff --git a/src/sage/__init__.py b/src/sage/__init__.py new file mode 100644 index 00000000000..f6eb5289696 --- /dev/null +++ b/src/sage/__init__.py @@ -0,0 +1,2 @@ +# This is only here to mark the sage directory as a Python package +# (so that cython determines the correct module name) diff --git a/src/sage/algebras/__init__.py b/src/sage/algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/finite_dimensional_algebras/__init__.py b/src/sage/algebras/finite_dimensional_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/finite_dimensional_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/fusion_rings/__init__.py b/src/sage/algebras/fusion_rings/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/fusion_rings/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/hecke_algebras/__init__.py b/src/sage/algebras/hecke_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/hecke_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/letterplace/__init__.py b/src/sage/algebras/letterplace/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/letterplace/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/lie_algebras/__init__.py b/src/sage/algebras/lie_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/lie_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/lie_conformal_algebras/__init__.py b/src/sage/algebras/lie_conformal_algebras/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/lie_conformal_algebras/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/quantum_groups/__init__.py b/src/sage/algebras/quantum_groups/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/quantum_groups/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/quatalg/__init__.py b/src/sage/algebras/quatalg/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/quatalg/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/algebras/steenrod/__init__.py b/src/sage/algebras/steenrod/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/algebras/steenrod/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/arith/__init__.py b/src/sage/arith/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/arith/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/calculus/__init__.py b/src/sage/calculus/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/calculus/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/calculus/transforms/__init__.py b/src/sage/calculus/transforms/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/calculus/transforms/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/categories/__init__.py b/src/sage/categories/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/categories/examples/__init__.py b/src/sage/categories/examples/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/categories/examples/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/__init__.py b/src/sage/coding/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/codecan/__init__.py b/src/sage/coding/codecan/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/codecan/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/guruswami_sudan/__init__.py b/src/sage/coding/guruswami_sudan/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/guruswami_sudan/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/coding/source_coding/__init__.py b/src/sage/coding/source_coding/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/coding/source_coding/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/__init__.py b/src/sage/combinat/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/chas/__init__.py b/src/sage/combinat/chas/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/chas/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/cluster_algebra_quiver/__init__.py b/src/sage/combinat/cluster_algebra_quiver/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/cluster_algebra_quiver/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/crystals/__init__.py b/src/sage/combinat/crystals/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/crystals/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/designs/__init__.py b/src/sage/combinat/designs/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/designs/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/matrices/__init__.py b/src/sage/combinat/matrices/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/matrices/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/ncsf_qsym/__init__.py b/src/sage/combinat/ncsf_qsym/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/ncsf_qsym/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/ncsym/__init__.py b/src/sage/combinat/ncsym/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/ncsym/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/path_tableaux/__init__.py b/src/sage/combinat/path_tableaux/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/path_tableaux/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/posets/__init__.py b/src/sage/combinat/posets/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/posets/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/rigged_configurations/__init__.py b/src/sage/combinat/rigged_configurations/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/rigged_configurations/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/root_system/__init__.py b/src/sage/combinat/root_system/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/root_system/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/sf/__init__.py b/src/sage/combinat/sf/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/sf/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/species/__init__.py b/src/sage/combinat/species/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/species/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/combinat/words/__init__.py b/src/sage/combinat/words/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/combinat/words/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/crypto/block_cipher/__init__.py b/src/sage/crypto/block_cipher/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/crypto/block_cipher/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/crypto/public_key/__init__.py b/src/sage/crypto/public_key/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/crypto/public_key/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/data_structures/__init__.py b/src/sage/data_structures/__init__.py new file mode 100644 index 00000000000..a347df6f046 --- /dev/null +++ b/src/sage/data_structures/__init__.py @@ -0,0 +1 @@ +# So that cython creates the correct module names diff --git a/src/sage/databases/__init__.py b/src/sage/databases/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/databases/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/__init__.py b/src/sage/dynamics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/arithmetic_dynamics/__init__.py b/src/sage/dynamics/arithmetic_dynamics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/arithmetic_dynamics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/cellular_automata/__init__.py b/src/sage/dynamics/cellular_automata/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/cellular_automata/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/complex_dynamics/__init__.py b/src/sage/dynamics/complex_dynamics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/dynamics/complex_dynamics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/ext/__init__.py b/src/sage/ext/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/ext/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/functions/__init__.py b/src/sage/functions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/functions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/game_theory/__init__.py b/src/sage/game_theory/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/game_theory/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/games/__init__.py b/src/sage/games/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/games/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/__init__.py b/src/sage/geometry/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/hyperbolic_space/__init__.py b/src/sage/geometry/hyperbolic_space/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/hyperbolic_space/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/hyperplane_arrangement/__init__.py b/src/sage/geometry/hyperplane_arrangement/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/hyperplane_arrangement/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/__init__.py b/src/sage/geometry/polyhedron/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/polyhedron/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py b/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/modules/__init__.py b/src/sage/geometry/polyhedron/modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/polyhedron/modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/riemannian_manifolds/__init__.py b/src/sage/geometry/riemannian_manifolds/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/riemannian_manifolds/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/geometry/triangulation/__init__.py b/src/sage/geometry/triangulation/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/geometry/triangulation/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/__init__.py b/src/sage/graphs/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/base/__init__.py b/src/sage/graphs/base/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/base/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/generators/__init__.py b/src/sage/graphs/generators/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/generators/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/graphs/graph_decompositions/__init__.py b/src/sage/graphs/graph_decompositions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/graphs/graph_decompositions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/__init__.py b/src/sage/groups/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/abelian_gps/__init__.py b/src/sage/groups/abelian_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/abelian_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/additive_abelian/__init__.py b/src/sage/groups/additive_abelian/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/additive_abelian/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/affine_gps/__init__.py b/src/sage/groups/affine_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/affine_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/lie_gps/__init__.py b/src/sage/groups/lie_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/lie_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/matrix_gps/__init__.py b/src/sage/groups/matrix_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/matrix_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/misc_gps/__init__.py b/src/sage/groups/misc_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/misc_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/__init__.py b/src/sage/groups/perm_gps/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/perm_gps/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/partn_ref/__init__.py b/src/sage/groups/perm_gps/partn_ref/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/perm_gps/partn_ref/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/partn_ref2/__init__.py b/src/sage/groups/perm_gps/partn_ref2/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/perm_gps/partn_ref2/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/groups/semimonomial_transformations/__init__.py b/src/sage/groups/semimonomial_transformations/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/groups/semimonomial_transformations/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/homology/__init__.py b/src/sage/homology/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/homology/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/interacts/__init__.py b/src/sage/interacts/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/interacts/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/interfaces/__init__.py b/src/sage/interfaces/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/interfaces/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/knots/__init__.py b/src/sage/knots/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/knots/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/lfunctions/__init__.py b/src/sage/lfunctions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/lfunctions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/__init__.py b/src/sage/libs/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/libs/gap/__init__.py b/src/sage/libs/gap/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/libs/mpc/__init__.py b/src/sage/libs/mpc/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/mpc/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpfi/__init__.py b/src/sage/libs/mpfi/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/mpfi/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpfr/__init__.py b/src/sage/libs/mpfr/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/mpfr/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/libs/polybori/__init__.py b/src/sage/libs/polybori/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/libs/polybori/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/logic/__init__.py b/src/sage/logic/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/logic/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/__init__.py b/src/sage/manifolds/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/differentiable/__init__.py b/src/sage/manifolds/differentiable/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/differentiable/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/differentiable/examples/__init__.py b/src/sage/manifolds/differentiable/examples/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/differentiable/examples/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/subsets/__init__.py b/src/sage/manifolds/subsets/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/manifolds/subsets/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/matrix/__init__.py b/src/sage/matrix/__init__.py new file mode 100644 index 00000000000..165aea9af28 --- /dev/null +++ b/src/sage/matrix/__init__.py @@ -0,0 +1 @@ +# Because of relative imports diff --git a/src/sage/matroids/__init__.py b/src/sage/matroids/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/matroids/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/misc/__init__.py b/src/sage/misc/__init__.py new file mode 100644 index 00000000000..e69de29bb2d diff --git a/src/sage/modular/__init__.py b/src/sage/modular/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/abvar/__init__.py b/src/sage/modular/abvar/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/abvar/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/arithgroup/__init__.py b/src/sage/modular/arithgroup/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/arithgroup/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/btquotients/__init__.py b/src/sage/modular/btquotients/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/btquotients/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/hecke/__init__.py b/src/sage/modular/hecke/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/hecke/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/local_comp/__init__.py b/src/sage/modular/local_comp/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/local_comp/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/modform/__init__.py b/src/sage/modular/modform/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/modform/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/modform_hecketriangle/__init__.py b/src/sage/modular/modform_hecketriangle/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/modform_hecketriangle/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/modsym/__init__.py b/src/sage/modular/modsym/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/modsym/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/overconvergent/__init__.py b/src/sage/modular/overconvergent/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/overconvergent/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/pollack_stevens/__init__.py b/src/sage/modular/pollack_stevens/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/pollack_stevens/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/quasimodform/__init__.py b/src/sage/modular/quasimodform/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/quasimodform/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/quatalg/__init__.py b/src/sage/modular/quatalg/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/quatalg/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modular/ssmod/__init__.py b/src/sage/modular/ssmod/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modular/ssmod/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/__init__.py b/src/sage/modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/fg_pid/__init__.py b/src/sage/modules/fg_pid/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/fg_pid/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/fp_graded/__init__.py b/src/sage/modules/fp_graded/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/fp_graded/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/fp_graded/steenrod/__init__.py b/src/sage/modules/fp_graded/steenrod/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/fp_graded/steenrod/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/modules/with_basis/__init__.py b/src/sage/modules/with_basis/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/modules/with_basis/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/monoids/__init__.py b/src/sage/monoids/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/monoids/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/numerical/__init__.py b/src/sage/numerical/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/numerical/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/numerical/backends/__init__.py b/src/sage/numerical/backends/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/numerical/backends/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/parallel/__init__.py b/src/sage/parallel/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/parallel/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/plot/__init__.py b/src/sage/plot/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/plot/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/plot/plot3d/__init__.py b/src/sage/plot/plot3d/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/plot/plot3d/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/probability/__init__.py b/src/sage/probability/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/probability/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/quadratic_forms/__init__.py b/src/sage/quadratic_forms/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/quadratic_forms/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/quadratic_forms/genera/__init__.py b/src/sage/quadratic_forms/genera/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/quadratic_forms/genera/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/quivers/__init__.py b/src/sage/quivers/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/quivers/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/__init__.py b/src/sage/rings/__init__.py new file mode 100644 index 00000000000..5ef917c1263 --- /dev/null +++ b/src/sage/rings/__init__.py @@ -0,0 +1 @@ +# To make cython create the correct module name diff --git a/src/sage/rings/asymptotic/__init__.py b/src/sage/rings/asymptotic/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/asymptotic/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/convert/__init__.py b/src/sage/rings/convert/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/convert/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/finite_rings/__init__.py b/src/sage/rings/finite_rings/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/finite_rings/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/function_field/__init__.py b/src/sage/rings/function_field/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/function_field/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/function_field/drinfeld_modules/__init__.py b/src/sage/rings/function_field/drinfeld_modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/function_field/drinfeld_modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/invariants/__init__.py b/src/sage/rings/invariants/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/invariants/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/number_field/__init__.py b/src/sage/rings/number_field/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/number_field/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/padics/__init__.py b/src/sage/rings/padics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/padics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/__init__.py b/src/sage/rings/polynomial/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/polynomial/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/padics/__init__.py b/src/sage/rings/polynomial/padics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/polynomial/padics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/weil/__init__.py b/src/sage/rings/polynomial/weil/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/polynomial/weil/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/semirings/__init__.py b/src/sage/rings/semirings/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/semirings/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/rings/valuation/__init__.py b/src/sage/rings/valuation/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/rings/valuation/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/sandpiles/__init__.py b/src/sage/sandpiles/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/sandpiles/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/sat/__init__.py b/src/sage/sat/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/sat/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/__init__.py b/src/sage/schemes/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/affine/__init__.py b/src/sage/schemes/affine/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/affine/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/berkovich/__init__.py b/src/sage/schemes/berkovich/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/berkovich/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/curves/__init__.py b/src/sage/schemes/curves/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/curves/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/cyclic_covers/__init__.py b/src/sage/schemes/cyclic_covers/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/cyclic_covers/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/elliptic_curves/__init__.py b/src/sage/schemes/elliptic_curves/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/elliptic_curves/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/generic/__init__.py b/src/sage/schemes/generic/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/generic/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/hyperelliptic_curves/__init__.py b/src/sage/schemes/hyperelliptic_curves/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/hyperelliptic_curves/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/jacobians/__init__.py b/src/sage/schemes/jacobians/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/jacobians/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/plane_conics/__init__.py b/src/sage/schemes/plane_conics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/plane_conics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/plane_quartics/__init__.py b/src/sage/schemes/plane_quartics/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/plane_quartics/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/product_projective/__init__.py b/src/sage/schemes/product_projective/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/product_projective/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/projective/__init__.py b/src/sage/schemes/projective/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/projective/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/riemann_surfaces/__init__.py b/src/sage/schemes/riemann_surfaces/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/riemann_surfaces/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/toric/__init__.py b/src/sage/schemes/toric/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/toric/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/schemes/toric/sheaf/__init__.py b/src/sage/schemes/toric/sheaf/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/schemes/toric/sheaf/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/sets/__init__.py b/src/sage/sets/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/sets/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/stats/__init__.py b/src/sage/stats/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/stats/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/stats/distributions/__init__.py b/src/sage/stats/distributions/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/stats/distributions/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/stats/hmm/__init__.py b/src/sage/stats/hmm/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/stats/hmm/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/symbolic/__init__.py b/src/sage/symbolic/__init__.py new file mode 100644 index 00000000000..27875dc3de5 --- /dev/null +++ b/src/sage/symbolic/__init__.py @@ -0,0 +1 @@ +# here so that cython creates the correct module name diff --git a/src/sage/symbolic/integration/__init__.py b/src/sage/symbolic/integration/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/symbolic/integration/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/tensor/__init__.py b/src/sage/tensor/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/tensor/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/tensor/modules/__init__.py b/src/sage/tensor/modules/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/tensor/modules/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/tests/books/__init__.py b/src/sage/tests/books/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/tests/books/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/topology/__init__.py b/src/sage/topology/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/topology/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage/typeset/__init__.py b/src/sage/typeset/__init__.py new file mode 100644 index 00000000000..1b10e244496 --- /dev/null +++ b/src/sage/typeset/__init__.py @@ -0,0 +1 @@ +# Here so that cython creates the correct module name diff --git a/src/sage_setup/autogen/interpreters/__init__.py b/src/sage_setup/autogen/interpreters/__init__.py index 75096d06b80..87dae60bce7 100644 --- a/src/sage_setup/autogen/interpreters/__init__.py +++ b/src/sage_setup/autogen/interpreters/__init__.py @@ -226,11 +226,6 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): except OSError: if not os.path.isdir(dirname): raise - # Remove leftover file from before move to namespace packages - try: - os.remove(os.path.join(dirname, '__init__.py')) - except FileNotFoundError: - pass # Although multiple files are generated by this function, since # they are all generated at once it suffices to make sure if just From 817c49c6d6b565f5d99b5835e34e6abed354285d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 24 Nov 2023 10:21:24 +0000 Subject: [PATCH 086/229] Fix tests --- src/sage/misc/cython.py | 9 +++------ src/sage_setup/find.py | 5 ----- 2 files changed, 3 insertions(+), 11 deletions(-) diff --git a/src/sage/misc/cython.py b/src/sage/misc/cython.py index c0c803bf943..4541cd03bd6 100644 --- a/src/sage/misc/cython.py +++ b/src/sage/misc/cython.py @@ -231,16 +231,13 @@ def cython(filename, verbose=0, compile_message=False, ....: ''') In Cython 0.29.33 using `from PACKAGE cimport MODULE` is broken - when `PACKAGE` is a namespace package, see :trac:`35322`:: + when `PACKAGE` is a namespace package, see :trac:`35322` + (but as of now sage.misc is not a namespace package, so this passes):: sage: cython(''' ....: from sage.misc cimport cachefunc ....: ''') - Traceback (most recent call last): - ... - RuntimeError: Error compiling Cython file: - ... - ...: 'sage/misc.pxd' not found + """ if not filename.endswith('pyx'): print("Warning: file (={}) should have extension .pyx".format(filename), file=sys.stderr) diff --git a/src/sage_setup/find.py b/src/sage_setup/find.py index 61d91abc2eb..f53a228fcb6 100644 --- a/src/sage_setup/find.py +++ b/src/sage_setup/find.py @@ -375,11 +375,6 @@ def installed_files_by_module(site_packages, modules=('sage',)): sage: f2 'sage/structure/....pyc' - Namespace packages:: - - sage: files_by_module['sage.graphs.graph_decompositions'] - set() - This takes about 30ms with warm cache:: sage: timeit('installed_files_by_module(site_packages)', # random output From b5ffbe6fc70f348f9a52b95da821e81ebdcfb00c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 24 Nov 2023 20:26:49 +0800 Subject: [PATCH 087/229] Fix linter --- src/sage/misc/cython.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/misc/cython.py b/src/sage/misc/cython.py index 4541cd03bd6..02e4db4f3c3 100644 --- a/src/sage/misc/cython.py +++ b/src/sage/misc/cython.py @@ -237,7 +237,7 @@ def cython(filename, verbose=0, compile_message=False, sage: cython(''' ....: from sage.misc cimport cachefunc ....: ''') - + """ if not filename.endswith('pyx'): print("Warning: file (={}) should have extension .pyx".format(filename), file=sys.stderr) From 4698e07a5223e0b4399f835369e5ca2c18012e56 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 7 Dec 2023 12:39:42 +0000 Subject: [PATCH 088/229] update meson files --- src/meson.build | 6 ------ src/sage/geometry/meson.build | 1 + src/sage/libs/arb/meson.build | 2 +- src/sage/libs/flint/meson.build | 1 + src/sage/matrix/meson.build | 5 +++-- src/sage/meson.build | 1 - src/sage/rings/meson.build | 4 ++-- src/sage/rings/number_field/meson.build | 2 +- src/sage/rings/polynomial/meson.build | 4 ++-- 9 files changed, 11 insertions(+), 15 deletions(-) diff --git a/src/meson.build b/src/meson.build index 8f5129dd25b..26cfcdab42d 100644 --- a/src/meson.build +++ b/src/meson.build @@ -195,12 +195,6 @@ mpc = declare_dependency( cc.find_library('mpc'), ] ) -# Cannot be found via pkg-config -arb = declare_dependency( - dependencies: [ - cc.find_library('arb'), - ] -) mpfi = declare_dependency( dependencies: [ cc.find_library('mpfi'), diff --git a/src/sage/geometry/meson.build b/src/sage/geometry/meson.build index 4964ad981a5..57853c8ae15 100644 --- a/src/sage/geometry/meson.build +++ b/src/sage/geometry/meson.build @@ -25,6 +25,7 @@ extension_data = { 'abc': files('abc.pyx'), 'integral_points_generic_dense': files('integral_points_generic_dense.pyx'), 'integral_points_integer_dense': files('integral_points_integer_dense.pyx'), + 'palp_normal_form': files('palp_normal_form.pyx'), 'point_collection': files('point_collection.pyx'), 'toric_lattice_element': files('toric_lattice_element.pyx'), } diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index 2a2d52dad41..cd5ec778dd1 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -29,7 +29,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs/arb', install: true, include_directories: [inc_arb, inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, arb, flint, gmp, mpfr], + dependencies: [py_dep, flint, gmp, mpfr], ) endforeach diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index ab3a64936a3..807e2d09f7b 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -34,6 +34,7 @@ py.install_sources( extension_data = { 'arith': files('arith.pyx'), 'flint': files('flint.pyx'), + 'fmpq_poly': files('fmpq_poly.pyx'), 'fmpz_factor': files('fmpz_factor.pyx'), 'fmpz_poly': files('fmpz_poly.pyx'), 'qsieve': files('qsieve.pyx'), diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 7a0362ef582..8b67f6b1bfc 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -49,6 +49,7 @@ extension_data = { 'matrix_generic_dense': files('matrix_generic_dense.pyx'), 'matrix_generic_sparse': files('matrix_generic_sparse.pyx'), # 'matrix_gfpn_dense': files('matrix_gfpn_dense.pyx'), # not yet on conda + 'matrix_laurent_mpolynomial_dense': files('matrix_laurent_mpolynomial_dense.pyx'), 'matrix_numpy_dense': files('matrix_numpy_dense.pyx'), 'matrix_numpy_integer_dense': files('matrix_numpy_integer_dense.pyx'), 'matrix_polynomial_dense': files('matrix_polynomial_dense.pyx'), @@ -70,7 +71,7 @@ foreach name, pyx : extension_data subdir: 'sage/matrix', install: true, include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib], + dependencies: [py_dep, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib], ) endforeach @@ -94,7 +95,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], + dependencies: [py_dep, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], ) endforeach diff --git a/src/sage/meson.build b/src/sage/meson.build index 8701d7f7a0b..980a62e3e35 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -21,7 +21,6 @@ conf_data.set('SAGE_MAXIMA', maxima.full_path()) conf_data.set('SAGE_MAXIMA_FAS', '') # Kenzo cannot yet be provided by the system, so we always use the SAGE_LOCAL path for now. conf_data.set('SAGE_KENZO_FAS', '\'${prefix}\'/lib/ecl/kenzo.fas') -conf_data.set('SAGE_ARB_LIBRARY', 'arb') # It can be found, so we don't have to set anything here: conf_data.set('NTL_INCDIR', '') conf_data.set('NTL_LIBDIR', '') diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 7d6a54781ab..85e59021c9f 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -131,7 +131,7 @@ foreach name, pyx : extension_data subdir: 'sage/rings', install: true, include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], ) endforeach @@ -149,7 +149,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], ) endforeach diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index da05baead7b..e3b6cfa6d5d 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -57,7 +57,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, arb, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index 3566bc62a9a..dbc0189b826 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -97,7 +97,7 @@ foreach name, pyx : extension_data subdir: 'sage/rings/polynomial', install: true, include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], + dependencies: [py_dep, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], ) endforeach @@ -122,7 +122,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, arb, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari, singular], + dependencies: [py_dep, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari, singular], ) endforeach From 1adecdbb964f6ccae7e681cac76646e7a80b2606 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 7 Dec 2023 12:56:31 +0000 Subject: [PATCH 089/229] fix bernmm compilation /opt/conda/envs/sage-dev/x86_64-conda-linux-gnu/include/c++/12.3.0/bits/stl_tree.h:772:15: error: static assertion failed: comparison object must be invocable as const 772 | is_invocable_v, /opt/conda/envs/sage-dev/x86_64-conda-linux-gnu/include/c++/12.3.0/bits/stl_tree.h:772:15: note: 'std::is_invocable_v' evaluates to false --- src/sage/rings/bernmm/bern_rat.cpp | 4 ++-- src/sage/rings/meson.build | 3 ++- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/src/sage/rings/bernmm/bern_rat.cpp b/src/sage/rings/bernmm/bern_rat.cpp index 963cb173524..1a1ad87b6c2 100644 --- a/src/sage/rings/bernmm/bern_rat.cpp +++ b/src/sage/rings/bernmm/bern_rat.cpp @@ -87,7 +87,7 @@ struct Item */ struct Item_cmp { - bool operator()(const Item* x, const Item* y) + bool operator()(const Item* x, const Item* y) const { return mpz_cmp(x->modulus, y->modulus) < 0; } @@ -331,9 +331,9 @@ void bern_rat(mpq_t res, long k, int num_threads) #ifdef USE_THREADS for (long i = 0; i < num_threads - 1; i++) pthread_join(threads[i], NULL); -#endif pthread_attr_destroy (&attr); +#endif // reconstruct B_k as a rational number Item* item = *(state.items.begin()); diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 85e59021c9f..143b683260a 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -136,7 +136,7 @@ foreach name, pyx : extension_data endforeach extension_data_cpp = { - 'bernmm': files('bernmm.pyx', 'bernmm/bern_modp.cpp', 'bernmm/bern_modp_util.cpp'),#, 'bernmm/bern_rat.cpp'), - TODO: Compilation error + 'bernmm': files('bernmm.pyx', 'bernmm/bern_modp.cpp', 'bernmm/bern_modp_util.cpp', 'bernmm/bern_rat.cpp'), 'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), 'fraction_field_FpT': files('fraction_field_FpT.pyx'), 'rational': files('rational.pyx'), @@ -147,6 +147,7 @@ foreach name, pyx : extension_data_cpp sources: pyx, subdir: 'sage/rings', install: true, + cpp_args: ['-DUSE_THREADS=1','-DTHREAD_STACK_SIZE=4096'], override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], From 56f33941c0df1885748de34fbcb23972c65142c0 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 7 Dec 2023 13:23:55 +0000 Subject: [PATCH 090/229] fix missing python file --- src/sage/quadratic_forms/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/quadratic_forms/meson.build b/src/sage/quadratic_forms/meson.build index 64271fb416f..46581073301 100644 --- a/src/sage/quadratic_forms/meson.build +++ b/src/sage/quadratic_forms/meson.build @@ -1,6 +1,7 @@ py.install_sources( 'all.py', 'binary_qf.py', + 'bqf_class_group.py', 'constructions.py', 'extras.py', 'qfsolve.py', From c9f99489b143c8704dc4579444c04cbb2f7fdc18 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 8 Dec 2023 16:43:24 +0000 Subject: [PATCH 091/229] fix a few more failing tests by installing necessary files --- src/sage/categories/meson.build | 6 ++++++ src/sage/data_structures/meson.build | 9 +++++++++ src/sage/rings/meson.build | 2 ++ src/sage/schemes/elliptic_curves/meson.build | 2 ++ 4 files changed, 19 insertions(+) diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index beb4a57fe7c..416be5f1897 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -1,5 +1,6 @@ py.install_sources( '__init__.py', + 'action.pxd', 'additive_groups.py', 'additive_magmas.py', 'additive_monoids.py', @@ -20,6 +21,8 @@ py.install_sources( 'bimodules.py', 'cartesian_product.py', 'category.py', + 'category_cy_helper.pxd', + 'category_singleton.pxd', 'category_types.py', 'category_with_axiom.py', 'chain_complexes.py', @@ -83,6 +86,7 @@ py.install_sources( 'finitely_generated_magmas.py', 'finitely_generated_semigroups.py', 'function_fields.py', + 'functor.pxd', 'g_sets.py', 'gcd_domains.py', 'generalized_coxeter_groups.py', @@ -130,6 +134,7 @@ py.install_sources( 'magmas_and_additive_magmas.py', 'magmatic_algebras.py', 'manifolds.py', + 'map.pxd', 'matrix_algebras.py', 'metric_spaces.py', 'modular_abelian_varieties.py', @@ -137,6 +142,7 @@ py.install_sources( 'modules_with_basis.py', 'monoid_algebras.py', 'monoids.py', + 'morphism.pxd', 'number_fields.py', 'objects.py', 'partially_ordered_monoids.py', diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index ad656c3cab6..4582d9bcb75 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -1,7 +1,16 @@ py.install_sources( '__init__.py', 'all.py', + 'binary_matrix.pxd', + 'binary_search.pxd', + 'bitset.pxd', + 'bitset_base.pxd', + 'bitset_intrinsics.h', + 'blas_dict.pxd', + 'bounded_integer_sequences.pxd', + 'list_of_pairs.pxd', 'mutable_poset.py', + 'sparse_bitset.pxd', 'stream.py', subdir: 'sage/data_structures', ) diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 143b683260a..473eb734cd3 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -36,6 +36,7 @@ py.install_sources( 'imaginary_unit.py', 'infinity.py', 'integer.pxd', + 'integer.pyx', 'integer_fake.h', 'integer_fake.pxd', 'integer_ring.pxd', @@ -62,6 +63,7 @@ py.install_sources( 'quotient_ring.py', 'quotient_ring_element.py', 'rational.pxd', + 'rational.pyx', 'rational_field.py', 'real_arb.pxd', 'real_double.pxd', diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index 6dcd2411cd4..ce4f2366180 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -30,6 +30,7 @@ py.install_sources( 'hom_composite.py', 'hom_frobenius.py', 'hom_scalar.py', + 'hom_sum.py', 'hom_velusqrt.py', 'isogeny_class.py', 'isogeny_small_degree.py', @@ -38,6 +39,7 @@ py.install_sources( 'kraus.py', 'lseries_ell.py', 'mod5family.py', + 'mod_poly.py', 'modular_parametrization.py', 'padic_lseries.py', 'padics.py', From 72053171ea0425ff182bdc8e5681118a8b898b83 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 9 Dec 2023 04:53:16 +0000 Subject: [PATCH 092/229] embed file position into cython docstrings --- src/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/meson.build b/src/meson.build index 26cfcdab42d..217e42bf8ff 100644 --- a/src/meson.build +++ b/src/meson.build @@ -242,6 +242,7 @@ add_project_arguments('-X c_api_binop_methods=True', language : 'cython') add_project_arguments('-X cdivision=True', language : 'cython') add_project_arguments('-X cpow=True', language : 'cython') add_project_arguments('-X embedsignature=True', language : 'cython') +add_project_arguments('--embed-positions', language : 'cython') add_project_arguments('-X fast_getattr=True', language : 'cython') #add_project_arguments('-X language_level="3"', language : 'cython') add_project_arguments('-X legacy_implicit_noexcept=True', language : 'cython') From 36a8e758129f9a307abcdbc81c965ae767deb9d4 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 14 Dec 2023 06:19:12 +0000 Subject: [PATCH 093/229] Fix build error --- src/sage/libs/pari/meson.build | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 1ba3f5e37e2..da41b9a3507 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -6,6 +6,7 @@ py.install_sources( 'convert_sage.pxd', 'convert_sage_complex_double.pxd', 'convert_sage_real_double.pxd', + 'convert_sage_real_mpfr.pxd', 'misc.pxd', 'tests.py', subdir: 'sage/libs/pari', @@ -16,7 +17,9 @@ extension_data = { 'convert_gmp': files('convert_gmp.pyx'), 'convert_sage': files('convert_sage.pyx'), 'convert_sage_complex_double': files('convert_sage_complex_double.pyx'), + 'convert_sage_matrix': files('convert_sage_matrix.pyx'), 'convert_sage_real_double': files('convert_sage_real_double.pyx'), + 'convert_sage_real_mpfr': files('convert_sage_real_mpfr.pyx'), 'misc': files('misc.pyx'), } From b468af35d7768f4428d641986db3586b701af5b3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 14 Dec 2023 07:42:49 +0000 Subject: [PATCH 094/229] cleanup --- src/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/meson.build b/src/meson.build index 217e42bf8ff..50ae0191a88 100644 --- a/src/meson.build +++ b/src/meson.build @@ -255,7 +255,6 @@ inc_flint = include_directories('sage/libs/flint') inc_gsl = include_directories('sage/libs/gsl') inc_ntl = include_directories('sage/libs/ntl') inc_arb = include_directories('sage/libs/arb') -inc_iml = include_directories('sage/libs') inc_data_structures = include_directories('sage/data_structures') inc_ext = include_directories('sage/ext') inc_interpreters = include_directories('sage/ext/interpreters') From 95ed032e9c8e8f142e2dc3ad2f26f13f50d6a5b4 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 14 Dec 2023 07:46:07 +0000 Subject: [PATCH 095/229] Remove explicit file names from docs Reason: Cython uses the working dir to relativize the file name (see https://github.com/cython/cython/blob/2f93a5f92a80352e72f5fa9679fd282cb7a497ad/Cython/Compiler/Scanning.py#L199-L200), but meson runs the compilation from a temporary folder (https://github.com/mesonbuild/meson/blob/e991c4d45460c09e5eaee6cb1041edb95d1e990e/mesonbuild/compilers/compilers.py#L832-L879). Hence this the file name relatization is not working. --- src/sage/misc/lazy_attribute.pyx | 4 ++-- src/sage/misc/nested_class.pyx | 2 +- src/sage/misc/sagedoc.py | 5 +---- src/sage/misc/sageinspect.py | 4 ++-- src/sage/repl/interpreter.py | 2 +- src/sage/structure/coerce.pyx | 6 +++--- 6 files changed, 10 insertions(+), 13 deletions(-) diff --git a/src/sage/misc/lazy_attribute.pyx b/src/sage/misc/lazy_attribute.pyx index 1f07870b8ec..0a04881979e 100644 --- a/src/sage/misc/lazy_attribute.pyx +++ b/src/sage/misc/lazy_attribute.pyx @@ -66,8 +66,8 @@ cdef class _lazy_attribute(): sage: Parent.element_class - sage: Parent.element_class.__doc__[91:147] - 'The (default) class for the elements of this parent\n\n ' + sage: "The (default) class for the elements of this parent" in Parent.element_class.__doc__ + True sage: Parent.element_class.__name__ 'element_class' sage: Parent.element_class.__module__ diff --git a/src/sage/misc/nested_class.pyx b/src/sage/misc/nested_class.pyx index e397b356c22..5691a0864f4 100644 --- a/src/sage/misc/nested_class.pyx +++ b/src/sage/misc/nested_class.pyx @@ -335,7 +335,7 @@ class MainClass(object, metaclass=NestedClassMetaclass): sage: from sage.misc.nested_class import MainClass sage: print(MainClass.NestedClass.NestedSubClass.dummy.__doc__) NestedSubClass.dummy(self, x, *args, r=(1, 2, 3.4), **kwds) - File: sage/misc/nested_class.pyx (starting at line ...) + File: ...sage/misc/nested_class.pyx (starting at line ...) A dummy method to demonstrate the embedding of method signature for nested classes. diff --git a/src/sage/misc/sagedoc.py b/src/sage/misc/sagedoc.py index 2632d0c4359..1b1a4516e42 100644 --- a/src/sage/misc/sagedoc.py +++ b/src/sage/misc/sagedoc.py @@ -653,10 +653,7 @@ def format(s, embedded=False): EXAMPLES:: sage: from sage.misc.sagedoc import format - sage: identity_matrix(2).rook_vector.__doc__[191:263] # needs sage.modules - 'Let `A` be an `m` by `n` (0,1)-matrix. We identify `A` with a chessboard' - - sage: format(identity_matrix(2).rook_vector.__doc__[191:263]) # needs sage.modules + sage: format('Let `A` be an `m` by `n` (0,1)-matrix. We identify `A` with a chessboard') 'Let A be an m by n (0,1)-matrix. We identify A with a chessboard\n' If the first line of the string is 'nodetex', remove 'nodetex' but diff --git a/src/sage/misc/sageinspect.py b/src/sage/misc/sageinspect.py index 4d7c3f9c19c..42d8dbb05e9 100644 --- a/src/sage/misc/sageinspect.py +++ b/src/sage/misc/sageinspect.py @@ -343,7 +343,7 @@ def _extract_embedded_signature(docstring, name): sage: from sage.misc.sageinspect import _extract_embedded_signature sage: from sage.misc.nested_class import MainClass sage: print(_extract_embedded_signature(MainClass.NestedClass.NestedSubClass.dummy.__doc__, 'dummy')[0]) - File: sage/misc/nested_class.pyx (starting at line ...) + File: ...sage/misc/nested_class.pyx (starting at line ...) ... sage: _extract_embedded_signature(MainClass.NestedClass.NestedSubClass.dummy.__doc__, 'dummy')[1] FullArgSpec(args=['self', 'x', 'r'], varargs='args', varkw='kwds', defaults=((1, 2, 3.4),), kwonlyargs=[], kwonlydefaults=None, annotations={}) @@ -1952,7 +1952,7 @@ def _sage_getdoc_unformatted(obj): sage: from sage.misc.sageinspect import _sage_getdoc_unformatted sage: print(_sage_getdoc_unformatted(sage.rings.integer.Integer)) Integer(x=None, base=0) - File: sage/rings/integer.pyx (starting at line ...) + File: ...sage/rings/integer.pyx (starting at line ...) The :class:`Integer` class represents arbitrary precision integers. It derives from the :class:`Element` class, so diff --git a/src/sage/repl/interpreter.py b/src/sage/repl/interpreter.py index 4ddb8aa94a3..5f38467caff 100644 --- a/src/sage/repl/interpreter.py +++ b/src/sage/repl/interpreter.py @@ -80,7 +80,7 @@ ZeroDivisionError...Traceback (most recent call last) ... ----> 1 Integer(1)/Integer(0) - .../sage/rings/integer.pyx... in sage.rings.integer.Integer...div... + ...integer.pyx... in sage.rings.integer.Integer...div... ... -> ... raise ZeroDivisionError("rational division by zero") ....: x = Rational.__new__(Rational) diff --git a/src/sage/structure/coerce.pyx b/src/sage/structure/coerce.pyx index 1e7c4dd1a49..5f8d4676cae 100644 --- a/src/sage/structure/coerce.pyx +++ b/src/sage/structure/coerce.pyx @@ -680,7 +680,7 @@ cdef class CoercionModel: sage: cm.record_exceptions() sage: cm._test_exception_stack() sage: cm.exception_stack() - ['Traceback (most recent call last):\n File "sage/structure/coerce.pyx", line ...TypeError: just a test'] + ['Traceback (most recent call last):\n File "...coerce.pyx", line ...TypeError: just a test'] sage: cm.record_exceptions(False) sage: cm._test_exception_stack() sage: cm.exception_stack() @@ -708,7 +708,7 @@ cdef class CoercionModel: [] sage: cm._test_exception_stack() sage: cm.exception_stack() - ['Traceback (most recent call last):\n File "sage/structure/coerce.pyx", line ...TypeError: just a test'] + ['Traceback (most recent call last):\n File "...coerce.pyx", line ...TypeError: just a test'] The function _test_exception_stack is executing the following code:: @@ -738,7 +738,7 @@ cdef class CoercionModel: [] sage: cm._test_exception_stack() sage: cm.exception_stack() - ['Traceback (most recent call last):\n File "sage/structure/coerce.pyx", line ...TypeError: just a test'] + ['Traceback (most recent call last):\n File "...coerce.pyx", line ...TypeError: just a test'] """ try: raise TypeError("just a test") From d19ce8072812527a100651725e5eb41f43a54d54 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 05:59:24 +0000 Subject: [PATCH 096/229] Update meson file of sets --- src/sage/sets/meson.build | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/src/sage/sets/meson.build b/src/sage/sets/meson.build index bf7a80d39bf..21a5d244f32 100644 --- a/src/sage/sets/meson.build +++ b/src/sage/sets/meson.build @@ -3,16 +3,20 @@ py.install_sources( 'all__sagemath_objects.py', 'cartesian_product.py', 'condition_set.py', + 'disjoint_set.pxd', 'disjoint_union_enumerated_sets.py', - 'family.py', + 'family.pxd', 'finite_enumerated_set.py', + 'finite_set_map_cy.pxd', 'finite_set_maps.py', 'image_set.py', 'integer_range.py', 'non_negative_integers.py', 'positive_integers.py', 'primes.py', + 'pythonclass.pxd', 'real_set.py', + 'recursively_enumerated_set.pxd', 'set.py', 'set_from_iterator.py', 'totally_ordered_finite_set.py', @@ -21,6 +25,7 @@ py.install_sources( extension_data = { 'disjoint_set': files('disjoint_set.pyx'), + 'family': files('family.pyx'), 'finite_set_map_cy': files('finite_set_map_cy.pyx'), 'pythonclass': files('pythonclass.pyx'), 'recursively_enumerated_set': files('recursively_enumerated_set.pyx'), From 192c26b89535da9c4d246fd607bf3f3bdba84302 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 06:09:23 +0000 Subject: [PATCH 097/229] Revert "Remove old warning about sage.gaprc" This reverts commit 395c310fbc0c4482dfe05c0ee5915431fa21160f. --- src/sage/libs/gap/util.pyx | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/src/sage/libs/gap/util.pyx b/src/sage/libs/gap/util.pyx index e7bf10c2593..8685dc08fa5 100644 --- a/src/sage/libs/gap/util.pyx +++ b/src/sage/libs/gap/util.pyx @@ -251,7 +251,10 @@ cdef initialize() noexcept: # Get the path to the sage.gaprc file and check that it exists sage_gaprc = os.path.join(os.path.dirname(__file__), 'sage.gaprc') - if os.path.exists(sage_gaprc): + if not os.path.exists(sage_gaprc): + warnings.warn(f"Sage's GAP initialization file {sage_gaprc} is " + "is missing; some functionality may be limited") + else: sage_gaprc = str_to_bytes(sage_gaprc, FS_ENCODING, "surrogateescape") argv[argc] = sage_gaprc argc += 1 From 88b6eddc70c7b70ad442818da85e8199405e6923 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 06:39:53 +0000 Subject: [PATCH 098/229] fix farey header import --- src/sage/modular/arithgroup/meson.build | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index ccaa0dc3811..e642bf49b0d 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -1,4 +1,3 @@ -inc_farey = meson.current_build_dir() py.install_sources( 'all.py', 'arithgroup_generic.py', @@ -46,8 +45,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/modular/arithgroup', install: true, override_options : ['cython_language=cpp'], - cpp_args: ['-I', inc_farey], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings, inc_src], dependencies: [py_dep, cysignals, flint, gmp, gmpxx], ) endforeach From cea7fd7762eda93c60b666c786e291bc9b0e4648 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 07:02:49 +0000 Subject: [PATCH 099/229] Print more infos during ci --- .github/workflows/ci-meson.yml | 2 +- src/doc/en/developer/meson.rst | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index f3af009c22b..df088edc6e8 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -77,7 +77,7 @@ jobs: - name: Build shell: bash -l {0} run: | - pip install --no-build-isolation --config-settings=builddir=builddir . + pip install --no-build-isolation --config-settings=builddir=builddir . -v - name: Test shell: bash -l {0} diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst index c1e62a5767b..e373b90c4eb 100644 --- a/src/doc/en/developer/meson.rst +++ b/src/doc/en/developer/meson.rst @@ -14,7 +14,7 @@ or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done`` To compile and install the project in editable install, just use ```bash - pip install --no-build-isolation --config-settings=builddir=builddir --editable . + pip install --no-build-isolation --config-settings=builddir=builddir --editable -v . ``` Under the hood, pip invokes meson to configure and build the project. From d2440c75890d6e160543a5d38d34669ffc56761b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 07:03:16 +0000 Subject: [PATCH 100/229] Implement gap root discovery in meson --- src/sage/libs/gap/meson.build | 1 + src/sage/meson.build | 7 +++++++ 2 files changed, 8 insertions(+) diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index b917e5c7bee..6256bb82f19 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -8,6 +8,7 @@ py.install_sources( 'gap_globals.py', 'gap_includes.pxd', 'operations.py', + 'sage.gaprc', 'saved_workspace.py', 'test.py', 'test_long.py', diff --git a/src/sage/meson.build b/src/sage/meson.build index 980a62e3e35..43fc0332b92 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -34,6 +34,13 @@ if openmp.found() conf_data.set('OPENMP_CFLAGS', '-fopenmp') conf_data.set('OPENMP_CXXFLAGS', '-fopenmp') endif +gap_exe = find_program('gap') +if gap_exe.found() + gaprun = run_command(gap_exe, '-r', '-q', '--bare', '--nointeract', '-c', 'Display(JoinStringsWithSeparator(GAPInfo.RootPaths,";"));', check: true) + gap_root_paths = gaprun.stdout().strip() + gap_root_paths = '${prefix}/lib/gap;${prefix}/share/gap;' + gaprun.stdout().strip() +endif +conf_data.set('GAP_ROOT_PATHS', gap_root_paths) configure_file( input: '../../pkgs/sage-conf_conda/_sage_conf/_conf.py.in', From 88b8b4786446c3927ffa0fe1eef3662fd56fda0f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 07:03:30 +0000 Subject: [PATCH 101/229] Install missing directory --- src/sage/libs/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 6833380ac11..a19f4b023fa 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -75,6 +75,7 @@ subdir('lcalc') subdir('linbox') install_subdir('linkages', install_dir: sage_install_dir / 'libs') install_subdir('lrcalc', install_dir: sage_install_dir / 'libs') +install_subdir('mpfr', install_dir: sage_install_dir / 'libs') subdir('mpmath') install_subdir('mwrank', install_dir: sage_install_dir / 'libs') subdir('ntl') From 987964625b2fad01995aa05f0b40ddd1fea11e44 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 07:04:08 +0000 Subject: [PATCH 102/229] fix failing test --- src/sage/repl/interpreter.py | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/repl/interpreter.py b/src/sage/repl/interpreter.py index 5f38467caff..c5e7c3ae49a 100644 --- a/src/sage/repl/interpreter.py +++ b/src/sage/repl/interpreter.py @@ -80,6 +80,7 @@ ZeroDivisionError...Traceback (most recent call last) ... ----> 1 Integer(1)/Integer(0) + ... ...integer.pyx... in sage.rings.integer.Integer...div... ... -> ... raise ZeroDivisionError("rational division by zero") From 2e44f4f2b3e69d31f77c5a1e64a6909bac2b843d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 07:24:55 +0000 Subject: [PATCH 103/229] docs: uninstall other sage packages --- src/doc/en/developer/meson.rst | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst index e373b90c4eb..7929dbcb4eb 100644 --- a/src/doc/en/developer/meson.rst +++ b/src/doc/en/developer/meson.rst @@ -8,7 +8,8 @@ Assume we're starting from a clean repo and a fully set up conda environment:: (Note, that in the codespace environment you first have to delete the already compiled files, e.g. with ``shopt -s globstar`` followed by ``rm src/**/*.so`` -or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done`` +or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done``. +Also uninstall the 'old' sage packages with `` pip uninstall sage-conf sage-setup sagemath-standard``. ) To compile and install the project in editable install, just use From 6a5a8da1192118e3e07ac0bb5c24c85bccc4693d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 08:37:40 +0000 Subject: [PATCH 104/229] include missing cython source file --- src/sage/rings/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 473eb734cd3..3559d7b0471 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -40,6 +40,7 @@ py.install_sources( 'integer_fake.h', 'integer_fake.pxd', 'integer_ring.pxd', + 'integer_ring.pyx', 'laurent_series_ring.py', 'laurent_series_ring_element.pxd', 'lazy_series.py', From 1ab5f9e6a104db6f6a4532b2a4ff75f6a94e18f5 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 19 Dec 2023 13:30:14 +0000 Subject: [PATCH 105/229] Install missing file in groups --- src/sage/groups/meson.build | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/sage/groups/meson.build b/src/sage/groups/meson.build index 648a9666b0b..495e4c48415 100644 --- a/src/sage/groups/meson.build +++ b/src/sage/groups/meson.build @@ -12,7 +12,9 @@ py.install_sources( 'fqf_orthogonal.py', 'free_group.py', 'galois_group.py', + 'galois_group_perm.py', 'generic.py', + 'group.pxd', 'group_exp.py', 'group_semidirect_product.py', 'groups_catalog.py', @@ -21,6 +23,8 @@ py.install_sources( 'libgap_group.py', 'libgap_mixin.py', 'libgap_morphism.py', + 'libgap_wrapper.pxd', + 'old.pxd', 'pari_group.py', 'raag.py', subdir: 'sage/groups', From 7891c11c948f8f8e5ee8d462598e4a2570584284 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 08:34:42 +0000 Subject: [PATCH 106/229] Remove unused setuptools versioning in pyproject.toml --- pyproject.toml | 3 --- 1 file changed, 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 1d197d695b2..50b5d087d92 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,6 +5,3 @@ requires = ['meson-python', 'cython>=3.0.0'] [project] name = 'sagemath' dynamic = ["version"] - -[tool.setuptools.dynamic] -version = {file = ["VERSION.txt"]} From ff6810361f2a2111a2c61fec181522b229ed5e45 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 08:41:48 +0000 Subject: [PATCH 107/229] Fix bug with Cython source code not appearing in tracebacks --- src/sage/repl/interpreter.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/repl/interpreter.py b/src/sage/repl/interpreter.py index c5e7c3ae49a..16fa6b02ef6 100644 --- a/src/sage/repl/interpreter.py +++ b/src/sage/repl/interpreter.py @@ -74,7 +74,7 @@ sage: from sage.repl.interpreter import get_test_shell sage: shell = get_test_shell() - sage: print("dummy line"); shell.run_cell('1/0') # see #25320 for the reason of the `...` and the dummy line in this test + sage: print("dummy line"); shell.run_cell('1/0') # known bug (meson doesn't include the Cython source code) # see #25320 for the reason of the `...` and the dummy line in this test dummy line ... ZeroDivisionError...Traceback (most recent call last) From 87938522619e9a743094ee36e967cb9e20660d64 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 08:48:21 +0000 Subject: [PATCH 108/229] Fix runtime problem with lie algebras --- src/sage/algebras/finite_dimensional_algebras/meson.build | 1 + src/sage/algebras/fusion_rings/meson.build | 4 ++++ src/sage/algebras/letterplace/meson.build | 2 ++ src/sage/algebras/lie_algebras/meson.build | 2 ++ src/sage/algebras/meson.build | 3 +++ src/sage/algebras/quatalg/meson.build | 1 + 6 files changed, 13 insertions(+) diff --git a/src/sage/algebras/finite_dimensional_algebras/meson.build b/src/sage/algebras/finite_dimensional_algebras/meson.build index 82905b4f663..66cc5ec37dc 100644 --- a/src/sage/algebras/finite_dimensional_algebras/meson.build +++ b/src/sage/algebras/finite_dimensional_algebras/meson.build @@ -1,6 +1,7 @@ py.install_sources( 'all.py', 'finite_dimensional_algebra.py', + 'finite_dimensional_algebra_element.pxd', 'finite_dimensional_algebra_ideal.py', 'finite_dimensional_algebra_morphism.py', subdir: 'sage/algebras/finite_dimensional_algebras', diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index 1e4abfb33ec..aa113b3f9b0 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -1,8 +1,12 @@ py.install_sources( 'all.py', 'f_matrix.py', + 'fast_parallel_fmats_methods.pxd', + 'fast_parallel_fusion_ring_braid_repn.pxd', 'fusion_double.py', 'fusion_ring.py', + 'poly_tup_engine.pxd', + 'shm_managers.pxd', subdir: 'sage/algebras/fusion_rings', ) diff --git a/src/sage/algebras/letterplace/meson.build b/src/sage/algebras/letterplace/meson.build index 213d8b05aaf..5437e721483 100644 --- a/src/sage/algebras/letterplace/meson.build +++ b/src/sage/algebras/letterplace/meson.build @@ -1,5 +1,7 @@ py.install_sources( 'all.py', + 'free_algebra_element_letterplace.pxd', + 'free_algebra_letterplace.pxd', subdir: 'sage/algebras/letterplace', ) diff --git a/src/sage/algebras/lie_algebras/meson.build b/src/sage/algebras/lie_algebras/meson.build index 72a44793891..f151799266e 100644 --- a/src/sage/algebras/lie_algebras/meson.build +++ b/src/sage/algebras/lie_algebras/meson.build @@ -8,12 +8,14 @@ py.install_sources( 'free_lie_algebra.py', 'heisenberg.py', 'lie_algebra.py', + 'lie_algebra_element.pxd', 'morphism.py', 'nilpotent_lie_algebra.py', 'onsager.py', 'poincare_birkhoff_witt.py', 'quotient.py', 'rank_two_heisenberg_virasoro.py', + 'representation.py', 'structure_coefficients.py', 'subalgebra.py', 'symplectic_derivation.py', diff --git a/src/sage/algebras/meson.build b/src/sage/algebras/meson.build index be482e9d38f..dabac117a84 100644 --- a/src/sage/algebras/meson.build +++ b/src/sage/algebras/meson.build @@ -7,9 +7,11 @@ py.install_sources( 'catalog.py', 'cellular_basis.py', 'clifford_algebra.py', + 'clifford_algebra_element.pxd', 'cluster_algebra.py', 'commutative_dga.py', 'down_up_algebra.py', + 'exterior_algebra_groebner.pxd', 'finite_gca.py', 'free_algebra.py', 'free_algebra_element.py', @@ -21,6 +23,7 @@ py.install_sources( 'iwahori_hecke_algebra.py', 'jordan_algebra.py', 'nil_coxeter_algebra.py', + 'octonion_algebra.pxd', 'orlik_solomon.py', 'orlik_terao.py', 'q_commuting_polynomials.py', diff --git a/src/sage/algebras/quatalg/meson.build b/src/sage/algebras/quatalg/meson.build index 36dc9f57077..86f2d2fcf04 100644 --- a/src/sage/algebras/quatalg/meson.build +++ b/src/sage/algebras/quatalg/meson.build @@ -1,6 +1,7 @@ py.install_sources( 'all.py', 'quaternion_algebra.py', + 'quaternion_algebra_element.pxd', subdir: 'sage/algebras/quatalg', ) From f93063456fd11d373d94b306e005b34148f8c71e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 09:31:44 +0000 Subject: [PATCH 109/229] Cleanup meson files --- meson.build | 33 +++++----- src/meson.build | 168 ++++++++---------------------------------------- 2 files changed, 45 insertions(+), 156 deletions(-) diff --git a/meson.build b/meson.build index b5ef4dc0d06..26db7085579 100644 --- a/meson.build +++ b/meson.build @@ -17,21 +17,22 @@ cc = meson.get_compiler('c') cpp = meson.get_compiler('cpp') cython = meson.get_compiler('cython') -# py_with_pytest = py_module.find_installation(required: false, modules: ['pytest']) -# if py_with_pytest.found() -# test( -# 'pytest', -# py_with_pytest, -# args: [ -# '-m', -# 'pytest', -# '-c', -# meson.current_source_dir() / 'tox.ini', -# '--doctest-modules', -# meson.current_source_dir() / 'src' / 'sage' / 'categories' -# ], -# timeout: 0, -# ) -# endif +# Additional targets +py_with_pytest = py_module.find_installation(required: false, modules: ['pytest']) +if py_with_pytest.found() + test( + 'pytest', + py_with_pytest, + args: [ + '-m', + 'pytest', + '-c', + meson.current_source_dir() / 'tox.ini', + '--doctest', + meson.current_source_dir() / 'src' / 'sage' / 'categories' + ], + timeout: 0, + ) +endif subdir('src') diff --git a/src/meson.build b/src/meson.build index 50ae0191a88..9881f0f4b6d 100644 --- a/src/meson.build +++ b/src/meson.build @@ -56,155 +56,43 @@ print(cypari2.__file__.replace('__init__.py', '')) cypari2 = declare_dependency( include_directories: inc_cypari2, ) -pari = declare_dependency( - dependencies: [ - cc.find_library('pari'), - ] -) +pari = cc.find_library('pari') -mpfr = declare_dependency( - dependencies: [ - cc.find_library('mpfr'), - ] -) +mpfr = cc.find_library('mpfr') # Cannot be found by pkg-config -flint = declare_dependency( - dependencies: [ - cc.find_library('flint'), - ] -) +flint = cc.find_library('flint') cblas = dependency('cblas') gsl = dependency('gsl', fallback: ['gsl', 'gsl_dep'], version : '>=2.5', required: true) -gd = declare_dependency( - dependencies: [ - cc.find_library('gd'), - ] -) -iml = declare_dependency( - dependencies: [ - cc.find_library('iml'), - ] -) -m = declare_dependency( - dependencies: [ - cc.find_library('m'), - ] -) -m4ri = declare_dependency( - dependencies: [ - cc.find_library('m4ri'), - ] -) -m4rie = declare_dependency( - dependencies: [ - cc.find_library('m4rie'), - ] -) -mtx = declare_dependency( - dependencies: [ - cc.find_library('mtx', required: false), - ] -) -png = declare_dependency( - dependencies: [ - cc.find_library('png'), - ] -) -zlib = declare_dependency( - dependencies: [ - cc.find_library('z'), - ] -) -intl = declare_dependency( - dependencies: [ - cc.find_library('intl', required: false), - ] -) -curl = declare_dependency( - dependencies: [ - cc.find_library('curl'), - ] -) +gd = cc.find_library('gd') +iml = cc.find_library('iml') +m = cc.find_library('m') +m4ri = cc.find_library('m4ri') +m4rie = cc.find_library('m4rie') +mtx = cc.find_library('mtx', required: false) +png = cc.find_library('png') +zlib = cc.find_library('z') +intl = cc.find_library('intl', required: false) +curl = cc.find_library('curl') # Cannot be found via pkg-config -ec = declare_dependency( - dependencies: [ - cc.find_library('ec'), - ] -) -ecm = declare_dependency( - dependencies: [ - cc.find_library('ecm'), - ] -) +ec = cc.find_library('ec') +ecm = cc.find_library('ecm') # Cannot be found via pkg-config glpk = cc.find_library('glpk') -ppl = declare_dependency( - dependencies: [ - cc.find_library('ppl'), - ] -) -gmpxx = declare_dependency( - dependencies: [ - cc.find_library('gmpxx'), - ] -) -readline = declare_dependency( - dependencies: [ - cc.find_library('readline'), - ] -) -lfunction = declare_dependency( - dependencies: [ - cc.find_library('Lfunction', required: false), - ] -) -fflas = declare_dependency( - dependencies: [ - cc.find_library('fflas'), - ] -) -givaro = declare_dependency( - dependencies: [ - cc.find_library('givaro'), - ] -) -linbox = declare_dependency( - dependencies: [ - cc.find_library('linbox'), - ] -) -braiding = declare_dependency( - dependencies: [ - cc.find_library('braiding'), - ] -) -gc = declare_dependency( - dependencies: [ - cc.find_library('gc'), - ] -) -homfly = declare_dependency( - dependencies: [ - cc.find_library('homfly'), - ] -) -mpc = declare_dependency( - dependencies: [ - cc.find_library('mpc'), - ] -) -mpfi = declare_dependency( - dependencies: [ - cc.find_library('mpfi'), - ] -) -mpc = declare_dependency( - dependencies: [ - cc.find_library('mpc'), - ] -) +ppl = cc.find_library('ppl') +gmpxx = cc.find_library('gmpxx') +readline = cc.find_library('readline') +lfunction = cc.find_library('Lfunction', required: false) +fflas = cc.find_library('fflas') +givaro = cc.find_library('givaro') +linbox = cc.find_library('linbox') +braiding = cc.find_library('braiding') +gc = cc.find_library('gc') +homfly = cc.find_library('homfly') +mpc = cc.find_library('mpc') +mpfi = cc.find_library('mpfi') +mpc = cc.find_library('mpc') # Cannot be found via pkg-config gap = cc.find_library('gap') From 866000e0acc91822ae56046221f30338868fd070 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 10:44:07 +0000 Subject: [PATCH 110/229] Update documentation --- src/doc/en/developer/meson.rst | 41 ----------- src/doc/en/installation/meson.rst | 113 +++++++++++++++++++++++++++++ src/doc/en/installation/source.rst | 6 ++ 3 files changed, 119 insertions(+), 41 deletions(-) delete mode 100644 src/doc/en/developer/meson.rst create mode 100644 src/doc/en/installation/meson.rst diff --git a/src/doc/en/developer/meson.rst b/src/doc/en/developer/meson.rst deleted file mode 100644 index 7929dbcb4eb..00000000000 --- a/src/doc/en/developer/meson.rst +++ /dev/null @@ -1,41 +0,0 @@ -Assume we're starting from a clean repo and a fully set up conda environment:: - - ```bash - ./bootstrap-conda - mamba env create --file src/environment-dev-3.11.yml --name sage-dev - conda activate sage-dev - ``` - -(Note, that in the codespace environment you first have to delete the -already compiled files, e.g. with ``shopt -s globstar`` followed by ``rm src/**/*.so`` -or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done``. -Also uninstall the 'old' sage packages with `` pip uninstall sage-conf sage-setup sagemath-standard``. -) - -To compile and install the project in editable install, just use - - ```bash - pip install --no-build-isolation --config-settings=builddir=builddir --editable -v . - ``` - -Under the hood, pip invokes meson to configure and build the project. -We can also use meson directly as follows. - -Now to configure the project, we need to run the following commands:: - - ```bash - meson setup builddir - ``` - -This will create a build directory ``builddir`` that will hold the build artifacts. -To compile the project, run the following command:: - - ```bash - meson compile -C builddir - ``` - -Installing the project is done with the following command:: - - ```bash - meson install -C builddir - ``` diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst new file mode 100644 index 00000000000..2eae02994b4 --- /dev/null +++ b/src/doc/en/installation/meson.rst @@ -0,0 +1,113 @@ +.. _build-source-meson: + +================================ +Building from source using Meson +================================ + +This is a short guide on how to build the Sage from source using Meson. + +Walkthrough +=========== + +Assume we're starting from a clean repo and a fully set up conda environment:: + + ```bash + ./bootstrap-conda + mamba env create --file src/environment-dev-3.11.yml --name sage-dev + conda activate sage-dev + ``` + +Alternatively, install all build requirements as described in section +:ref:`_section-prereqs`. + +.. NOTE:: + + If you have previously build Sage in-place, you first have to delete the + already compiled files, e.g. with ``shopt -s globstar`` followed by + ``rm src/**/*.so`` or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done``. + Also uninstall the 'old' sage packages with ``pip uninstall sage-conf sage-setup sagemath-standard``. + +Generate a few files that are needed for the build process:: + + ```bash + python -m sage_setup.autogen.interpreters src/sage/ext/interpreters + ``` + +To compile and install the project in editable install, just use:: + + ```bash + pip install --no-build-isolation --editable . + ``` + +This will install Sage in the current Python environment. You can then start +Sage from the command line with ``./sage`` or run the tests with ``./sage -t``. + +.. NOTE:: + + By using ``pip install --editable`` in the above steps, the Sage library + is installed in editable mode. This means that when you only edit source + files, there is no need to rebuild the library; it suffices to restart Sage. + Note that this even works when you edit Cython files, so you no longer need + to manually compile after editing Cython files. + +.. NOTE:: + + Note that ``make`` is not used at all, nor is ``configure``. + This means that any Sage-the-distribution commands such as ``sage -i`` + will not work. + +Background information +====================== + +Under the hood, pip invokes meson to configure and build the project. +We can also use meson directly as follows. + +To configure the project, we need to run the following command:: + + ```bash + meson setup builddir --prefix=$PWD/build-install + ``` + +This will create a build directory ``builddir`` that will hold the build artifacts. +The ``--prefix`` option specifies the directory where the Sage will be installed. +To compile the project, run the following command:: + + ```bash + meson compile -C builddir + ``` + +Installing is done with the following command:: + + ```bash + meson install -C builddir + ``` + +This will then install in the directory specified by ``--prefix``, e.g. +`build-install/lib/python3.11/site-packages/sage`. +Usually, this directory is not on your Python path, so you have to use:: + + ```bash + PYTHONPATH=build-install/lib/python3.11/site-packages ./sage + ``` + +Alternatively, we can still use pip to install:: + + ```bash + pip install --no-build-isolation --config-settings=builddir=builddir --editable . + ``` + +.. tip:: + + Package maintainers may want to specify further build options or need + to install to a different directory than the install prefix. + Both are supported naturally by Meson:: + + ```bash + meson setup builddir --prefix=/usr --libdir=... -Dcpp_args=... + meson compile -C builddir + DESTDIR=/path/to/staging/root meson install -C builddir + ``` + + See `Meson's quick guide `_ + and `Meson's install guide `_ + for more information. diff --git a/src/doc/en/installation/source.rst b/src/doc/en/installation/source.rst index ebe8f38cb15..c39acf13ea9 100644 --- a/src/doc/en/installation/source.rst +++ b/src/doc/en/installation/source.rst @@ -373,6 +373,12 @@ does not raise an :class:`ImportError`, then it worked. Installation steps ------------------ +.. hint:: + + The following steps use the classical ``./configure && make`` build + process. The modern Meson build system is also supported, see + :ref:`_build-source-meson`. + #. Follow the procedure in the file `README.md `_ in ``SAGE_ROOT``. From dbef9cc3faf29cb43a4a225dfcf18fa6a0b4609c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 10:50:21 +0000 Subject: [PATCH 111/229] Add meson as an installation option in table of contents --- src/doc/en/installation/index.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/src/doc/en/installation/index.rst b/src/doc/en/installation/index.rst index 50d0af27341..c4240be19e3 100644 --- a/src/doc/en/installation/index.rst +++ b/src/doc/en/installation/index.rst @@ -149,6 +149,7 @@ More information: binary conda source + meson launching troubles From 1174548f21149350a826357ef70db53fa73974d0 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 11:07:37 +0000 Subject: [PATCH 112/229] Use ccache action --- .github/workflows/ci-meson.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index df088edc6e8..5a2df82dea9 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -45,9 +45,9 @@ jobs: ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} - name: Compiler cache - uses: actions/cache@v3 + uses: hendrikmuhs/ccache-action@v1.2 with: - path: ${{ github.workspace }}/.ccache + create-symlink: true key: ${{ runner.os }}-meson-${{ matrix.python }}-${{ github.run_id }} restore-keys: ${{ runner.os }}-meson-${{ matrix.python }}- From 52f0032c3131ffba310c0ad61582aaf6cec5e9e3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 11:45:09 +0000 Subject: [PATCH 113/229] Add ccache to project compilers as workaround --- meson.build | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/meson.build b/meson.build index 26db7085579..d330672610e 100644 --- a/meson.build +++ b/meson.build @@ -1,10 +1,11 @@ project( 'SageMath', - ['c', 'cpp', 'cython'], + ['ccache','c', 'cpp', 'cython'], version: files('src/VERSION.txt'), license: 'GPL v3', meson_version: '>= 1.2.0', ) +# Have to specify ccache explicitly for now: https://github.com/mesonbuild/meson/issues/12612 # Python module # https://mesonbuild.com/Python-module.html From 76c36e3212e4759176ef67377b246b71853b4da8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 11:55:59 +0000 Subject: [PATCH 114/229] Remove ccache from conda env --- bootstrap-conda | 1 - 1 file changed, 1 deletion(-) diff --git a/bootstrap-conda b/bootstrap-conda index bf1126c43d9..ea30ae0b772 100755 --- a/bootstrap-conda +++ b/bootstrap-conda @@ -100,7 +100,6 @@ echo >&2 $0:$LINENO: generate conda environment files sed 's/name: sage-build/name: sage/' environment-template.yml echo " - meson" echo " - meson-python" - echo " - ccache" echo " - pytest" echo " # Additional packages providing all dependencies for the Sage library" for pkg in $SAGELIB_SYSTEM_PACKAGES; do From ad1b8a7d0d4a3e9f9a980cabb21a50596ddecf45 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 12:37:35 +0000 Subject: [PATCH 115/229] Update ccache-action to use main branch --- .github/workflows/ci-meson.yml | 2 +- meson.build | 3 +-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 5a2df82dea9..a839dc063c2 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -45,7 +45,7 @@ jobs: ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} - name: Compiler cache - uses: hendrikmuhs/ccache-action@v1.2 + uses: hendrikmuhs/ccache-action@main with: create-symlink: true key: ${{ runner.os }}-meson-${{ matrix.python }}-${{ github.run_id }} diff --git a/meson.build b/meson.build index d330672610e..26db7085579 100644 --- a/meson.build +++ b/meson.build @@ -1,11 +1,10 @@ project( 'SageMath', - ['ccache','c', 'cpp', 'cython'], + ['c', 'cpp', 'cython'], version: files('src/VERSION.txt'), license: 'GPL v3', meson_version: '>= 1.2.0', ) -# Have to specify ccache explicitly for now: https://github.com/mesonbuild/meson/issues/12612 # Python module # https://mesonbuild.com/Python-module.html From 482dd0d0bccc5154980799bd5a72176f8dfd24fe Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 13:25:11 +0000 Subject: [PATCH 116/229] Explicitly set path to ccache --- .github/workflows/ci-meson.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index a839dc063c2..abc9d031732 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -45,9 +45,8 @@ jobs: ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} - name: Compiler cache - uses: hendrikmuhs/ccache-action@main + uses: hendrikmuhs/ccache-action@1.2 with: - create-symlink: true key: ${{ runner.os }}-meson-${{ matrix.python }}-${{ github.run_id }} restore-keys: ${{ runner.os }}-meson-${{ matrix.python }}- @@ -77,6 +76,7 @@ jobs: - name: Build shell: bash -l {0} run: | + export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH" pip install --no-build-isolation --config-settings=builddir=builddir . -v - name: Test From 7943da698a1c5a81b9bd312274183a262b681806 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 13:47:00 +0000 Subject: [PATCH 117/229] Fix ccache-action version --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index abc9d031732..ee90e8ad7ea 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -45,7 +45,7 @@ jobs: ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} - name: Compiler cache - uses: hendrikmuhs/ccache-action@1.2 + uses: hendrikmuhs/ccache-action@v1.2 with: key: ${{ runner.os }}-meson-${{ matrix.python }}-${{ github.run_id }} restore-keys: ${{ runner.os }}-meson-${{ matrix.python }}- From e8ae9cffd8289d70e0b772d32e071f232321abe7 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 30 Dec 2023 16:22:34 +0000 Subject: [PATCH 118/229] Update build configuration to force use ccache --- .github/workflows/ci-meson.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index ee90e8ad7ea..d9378eab527 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -77,6 +77,8 @@ jobs: shell: bash -l {0} run: | export PATH="/usr/lib/ccache:/usr/local/opt/ccache/libexec:$PATH" + export CC="ccache $CC" + export CXX="ccache $CXX" pip install --no-build-isolation --config-settings=builddir=builddir . -v - name: Test From 634512b1a73417e8a454e09c6fee332d9c190e80 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 31 Dec 2023 06:38:09 +0000 Subject: [PATCH 119/229] Fix reference to section-prereqs in meson.rst --- src/doc/en/installation/meson.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index 2eae02994b4..d2179bf8fe2 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -18,7 +18,7 @@ Assume we're starting from a clean repo and a fully set up conda environment:: ``` Alternatively, install all build requirements as described in section -:ref:`_section-prereqs`. +:ref:`section-prereqs`. .. NOTE:: From 1c47bcdbcf19b65d60b7d1f624f534dd4e2ba102 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 31 Dec 2023 09:14:26 +0000 Subject: [PATCH 120/229] Fix broken link in installation instructions --- src/doc/en/installation/source.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/doc/en/installation/source.rst b/src/doc/en/installation/source.rst index c39acf13ea9..3e74447146e 100644 --- a/src/doc/en/installation/source.rst +++ b/src/doc/en/installation/source.rst @@ -377,7 +377,7 @@ Installation steps The following steps use the classical ``./configure && make`` build process. The modern Meson build system is also supported, see - :ref:`_build-source-meson`. + :ref:`build-source-meson`. #. Follow the procedure in the file `README.md `_ in ``SAGE_ROOT``. From 46bc6b4279c47c3f12c7da29f309b053a5cdb17c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 31 Dec 2023 09:21:43 +0000 Subject: [PATCH 121/229] Fix ccache restore key --- .github/workflows/ci-meson.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index d9378eab527..670be87a152 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -47,8 +47,7 @@ jobs: - name: Compiler cache uses: hendrikmuhs/ccache-action@v1.2 with: - key: ${{ runner.os }}-meson-${{ matrix.python }}-${{ github.run_id }} - restore-keys: ${{ runner.os }}-meson-${{ matrix.python }}- + key: ${{ runner.os }}-meson-${{ matrix.python }} - name: Setup Conda environment uses: conda-incubator/setup-miniconda@v2 From 37e9d49cf65a83ef0926644aa21ed85aff9fde95 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 16 Jan 2024 05:57:31 +0000 Subject: [PATCH 122/229] Update flint meson file --- src/sage/libs/flint/meson.build | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index 807e2d09f7b..88d8a479603 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -33,12 +33,16 @@ py.install_sources( extension_data = { 'arith': files('arith.pyx'), - 'flint': files('flint.pyx'), - 'fmpq_poly': files('fmpq_poly.pyx'), - 'fmpz_factor': files('fmpz_factor.pyx'), + 'arith_sage': files('arith_sage.pyx'), + 'flint_sage': files('flint_sage.pyx'), + 'fmpq_poly_sage': files('fmpq_poly_sage.pyx'), + 'fmpz_factor_sage': files('fmpz_factor_sage.pyx'), 'fmpz_poly': files('fmpz_poly.pyx'), + 'fmpz_poly_sage': files('fmpz_poly_sage.pyx'), 'qsieve': files('qsieve.pyx'), + 'qsieve_sage': files('qsieve_sage.pyx'), 'ulong_extras': files('ulong_extras.pyx'), + 'ulong_extras_sage': files('ulong_extras_sage.pyx'), } foreach name, pyx : extension_data From 4ef94d474b2d1bf7de77494f873c959832d2cca6 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 16 Jan 2024 08:43:47 +0000 Subject: [PATCH 123/229] Update test command to use 4 parallel processes --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 670be87a152..279fc9d1365 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -82,4 +82,4 @@ jobs: - name: Test shell: bash -l {0} - run: ./sage -t --all -p0 + run: ./sage -t --all -p4 From 30c7049959658abf264210c81250691b27f29512 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 11 Feb 2024 15:02:18 +0000 Subject: [PATCH 124/229] Remove gap_packages.py from py.install_sources() --- src/sage/tests/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/sage/tests/meson.build b/src/sage/tests/meson.build index d4355a4a7be..0ec4233334a 100644 --- a/src/sage/tests/meson.build +++ b/src/sage/tests/meson.build @@ -11,7 +11,6 @@ py.install_sources( 'combinatorial_hopf_algebras.py', 'finite_poset.py', 'functools_partial_src.py', - 'gap_packages.py', 'gosper-sum.py', 'lazy_imports.py', 'modular_group_cohomology.py', From 0d8b2d7dda73f570369b8279845de184a278673a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 11 Feb 2024 16:37:22 +0000 Subject: [PATCH 125/229] Add new Python files to various modules --- src/sage/combinat/designs/meson.build | 1 + src/sage/matroids/meson.build | 2 ++ src/sage/schemes/elliptic_curves/meson.build | 1 + 3 files changed, 4 insertions(+) diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build index d9d393de6c8..d44cf8289a7 100644 --- a/src/sage/combinat/designs/meson.build +++ b/src/sage/combinat/designs/meson.build @@ -1,4 +1,5 @@ py.install_sources( + 'MOLS_handbook_data.py', 'all.py', 'bibd.py', 'block_design.py', diff --git a/src/sage/matroids/meson.build b/src/sage/matroids/meson.build index f018aea355e..917758578b5 100644 --- a/src/sage/matroids/meson.build +++ b/src/sage/matroids/meson.build @@ -3,6 +3,8 @@ py.install_sources( 'all.py', 'catalog.py', 'constructor.py', + 'database_collections.py', + 'database_matroids.py', 'dual_matroid.py', 'graphic_matroid.py', 'matroids_catalog.py', diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index ce4f2366180..d6120830312 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -32,6 +32,7 @@ py.install_sources( 'hom_scalar.py', 'hom_sum.py', 'hom_velusqrt.py', + 'homset.py', 'isogeny_class.py', 'isogeny_small_degree.py', 'jacobian.py', From dc24eaf1ff5f3289f5c2cbf5ec817fcff66959c8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 13 Feb 2024 04:03:45 +0000 Subject: [PATCH 126/229] Add order_ideal.py to number_field module --- src/sage/rings/number_field/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index e3b6cfa6d5d..35ba8a30451 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -16,6 +16,7 @@ py.install_sources( 'number_field_ideal_rel.py', 'number_field_rel.py', 'order.py', + 'order_ideal.py', 'selmer_group.py', 'small_primes_of_degree_one.py', 'splitting_field.py', From dacc419cd6781be45144f8170d84c20e1875abc2 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 13 Feb 2024 04:15:43 +0000 Subject: [PATCH 127/229] Delete unused meson files in algebras and combinatorics --- src/sage/algebras/hecke_algebras/meson.build | 10 ------- .../lie_conformal_algebras/meson.build | 24 --------------- src/sage/algebras/quantum_groups/meson.build | 11 ------- src/sage/algebras/steenrod/meson.build | 10 ------- src/sage/combinat/chas/meson.build | 7 ----- .../cluster_algebra_quiver/meson.build | 11 ------- src/sage/combinat/ncsf_qsym/meson.build | 10 ------- src/sage/combinat/ncsym/meson.build | 8 ----- src/sage/combinat/path_tableaux/meson.build | 10 ------- src/sage/combinat/sf/meson.build | 29 ------------------- src/sage/combinat/species/meson.build | 23 --------------- 11 files changed, 153 deletions(-) delete mode 100644 src/sage/algebras/hecke_algebras/meson.build delete mode 100644 src/sage/algebras/lie_conformal_algebras/meson.build delete mode 100644 src/sage/algebras/quantum_groups/meson.build delete mode 100644 src/sage/algebras/steenrod/meson.build delete mode 100644 src/sage/combinat/chas/meson.build delete mode 100644 src/sage/combinat/cluster_algebra_quiver/meson.build delete mode 100644 src/sage/combinat/ncsf_qsym/meson.build delete mode 100644 src/sage/combinat/ncsym/meson.build delete mode 100644 src/sage/combinat/path_tableaux/meson.build delete mode 100644 src/sage/combinat/sf/meson.build delete mode 100644 src/sage/combinat/species/meson.build diff --git a/src/sage/algebras/hecke_algebras/meson.build b/src/sage/algebras/hecke_algebras/meson.build deleted file mode 100644 index 2ae6f3da80c..00000000000 --- a/src/sage/algebras/hecke_algebras/meson.build +++ /dev/null @@ -1,10 +0,0 @@ -py.install_sources( - 'all.py', - 'ariki_koike_algebra.py', - 'cubic_hecke_algebra.py', - 'cubic_hecke_base_ring.py', - 'cubic_hecke_matrix_rep.py', - subdir: 'sage/algebras/hecke_algebras', -) - - diff --git a/src/sage/algebras/lie_conformal_algebras/meson.build b/src/sage/algebras/lie_conformal_algebras/meson.build deleted file mode 100644 index 500fa71e42a..00000000000 --- a/src/sage/algebras/lie_conformal_algebras/meson.build +++ /dev/null @@ -1,24 +0,0 @@ -py.install_sources( - 'abelian_lie_conformal_algebra.py', - 'affine_lie_conformal_algebra.py', - 'all.py', - 'bosonic_ghosts_lie_conformal_algebra.py', - 'examples.py', - 'fermionic_ghosts_lie_conformal_algebra.py', - 'finitely_freely_generated_lca.py', - 'free_bosons_lie_conformal_algebra.py', - 'free_fermions_lie_conformal_algebra.py', - 'freely_generated_lie_conformal_algebra.py', - 'graded_lie_conformal_algebra.py', - 'lie_conformal_algebra.py', - 'lie_conformal_algebra_element.py', - 'lie_conformal_algebra_with_basis.py', - 'lie_conformal_algebra_with_structure_coefs.py', - 'n2_lie_conformal_algebra.py', - 'neveu_schwarz_lie_conformal_algebra.py', - 'virasoro_lie_conformal_algebra.py', - 'weyl_lie_conformal_algebra.py', - subdir: 'sage/algebras/lie_conformal_algebras', -) - - diff --git a/src/sage/algebras/quantum_groups/meson.build b/src/sage/algebras/quantum_groups/meson.build deleted file mode 100644 index c3f0d5c7fb5..00000000000 --- a/src/sage/algebras/quantum_groups/meson.build +++ /dev/null @@ -1,11 +0,0 @@ -py.install_sources( - 'ace_quantum_onsager.py', - 'all.py', - 'fock_space.py', - 'q_numbers.py', - 'quantum_group_gap.py', - 'representations.py', - subdir: 'sage/algebras/quantum_groups', -) - - diff --git a/src/sage/algebras/steenrod/meson.build b/src/sage/algebras/steenrod/meson.build deleted file mode 100644 index ad6a151b788..00000000000 --- a/src/sage/algebras/steenrod/meson.build +++ /dev/null @@ -1,10 +0,0 @@ -py.install_sources( - 'all.py', - 'steenrod_algebra.py', - 'steenrod_algebra_bases.py', - 'steenrod_algebra_misc.py', - 'steenrod_algebra_mult.py', - subdir: 'sage/algebras/steenrod', -) - - diff --git a/src/sage/combinat/chas/meson.build b/src/sage/combinat/chas/meson.build deleted file mode 100644 index 55138497547..00000000000 --- a/src/sage/combinat/chas/meson.build +++ /dev/null @@ -1,7 +0,0 @@ -py.install_sources( - 'all.py', - 'fsym.py', - 'wqsym.py', - subdir: 'sage/combinat/chas', -) - diff --git a/src/sage/combinat/cluster_algebra_quiver/meson.build b/src/sage/combinat/cluster_algebra_quiver/meson.build deleted file mode 100644 index 33f6c253ed1..00000000000 --- a/src/sage/combinat/cluster_algebra_quiver/meson.build +++ /dev/null @@ -1,11 +0,0 @@ -py.install_sources( - 'all.py', - 'cluster_seed.py', - 'interact.py', - 'mutation_class.py', - 'mutation_type.py', - 'quiver.py', - 'quiver_mutation_type.py', - subdir: 'sage/combinat/cluster_algebra_quiver', -) - diff --git a/src/sage/combinat/ncsf_qsym/meson.build b/src/sage/combinat/ncsf_qsym/meson.build deleted file mode 100644 index e30fce36206..00000000000 --- a/src/sage/combinat/ncsf_qsym/meson.build +++ /dev/null @@ -1,10 +0,0 @@ -py.install_sources( - 'all.py', - 'combinatorics.py', - 'generic_basis_code.py', - 'ncsf.py', - 'qsym.py', - 'tutorial.py', - subdir: 'sage/combinat/ncsf_qsym', -) - diff --git a/src/sage/combinat/ncsym/meson.build b/src/sage/combinat/ncsym/meson.build deleted file mode 100644 index d254c159ad3..00000000000 --- a/src/sage/combinat/ncsym/meson.build +++ /dev/null @@ -1,8 +0,0 @@ -py.install_sources( - 'all.py', - 'bases.py', - 'dual.py', - 'ncsym.py', - subdir: 'sage/combinat/ncsym', -) - diff --git a/src/sage/combinat/path_tableaux/meson.build b/src/sage/combinat/path_tableaux/meson.build deleted file mode 100644 index 4247e6ad15e..00000000000 --- a/src/sage/combinat/path_tableaux/meson.build +++ /dev/null @@ -1,10 +0,0 @@ -py.install_sources( - 'all.py', - 'catalog.py', - 'dyck_path.py', - 'frieze.py', - 'path_tableau.py', - 'semistandard.py', - subdir: 'sage/combinat/path_tableaux', -) - diff --git a/src/sage/combinat/sf/meson.build b/src/sage/combinat/sf/meson.build deleted file mode 100644 index 2d305a3bee6..00000000000 --- a/src/sage/combinat/sf/meson.build +++ /dev/null @@ -1,29 +0,0 @@ -py.install_sources( - 'all.py', - 'character.py', - 'classical.py', - 'dual.py', - 'elementary.py', - 'hall_littlewood.py', - 'hecke.py', - 'homogeneous.py', - 'jack.py', - 'k_dual.py', - 'kfpoly.py', - 'llt.py', - 'macdonald.py', - 'monomial.py', - 'multiplicative.py', - 'new_kschur.py', - 'ns_macdonald.py', - 'orthogonal.py', - 'orthotriang.py', - 'powersum.py', - 'schur.py', - 'sf.py', - 'sfa.py', - 'symplectic.py', - 'witt.py', - subdir: 'sage/combinat/sf', -) - diff --git a/src/sage/combinat/species/meson.build b/src/sage/combinat/species/meson.build deleted file mode 100644 index a7bf282707c..00000000000 --- a/src/sage/combinat/species/meson.build +++ /dev/null @@ -1,23 +0,0 @@ -py.install_sources( - 'all.py', - 'characteristic_species.py', - 'composition_species.py', - 'cycle_species.py', - 'empty_species.py', - 'functorial_composition_species.py', - 'generating_series.py', - 'library.py', - 'linear_order_species.py', - 'misc.py', - 'partition_species.py', - 'permutation_species.py', - 'product_species.py', - 'recursive_species.py', - 'set_species.py', - 'species.py', - 'structure.py', - 'subset_species.py', - 'sum_species.py', - subdir: 'sage/combinat/species', -) - From 6a89c454f0f3ac3cf52f6cfe97be3c8bff41444a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 15 Feb 2024 07:10:16 +0000 Subject: [PATCH 128/229] Add new files to categories and designs --- src/sage/categories/meson.build | 1 + src/sage/combinat/designs/meson.build | 1 + 2 files changed, 2 insertions(+) diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index 416be5f1897..57965b62ec9 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -44,6 +44,7 @@ py.install_sources( 'coxeter_groups.py', 'crystals.py', 'cw_complexes.py', + 'dedekind_domains.py', 'discrete_valuation.py', 'distributive_magmas_and_additive_magmas.py', 'division_rings.py', diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build index d44cf8289a7..a36c92e08e2 100644 --- a/src/sage/combinat/designs/meson.build +++ b/src/sage/combinat/designs/meson.build @@ -7,6 +7,7 @@ py.install_sources( 'covering_design.py', 'database.py', 'design_catalog.py', + 'designs_pyx.pxd', 'difference_family.py', 'difference_matrices.py', 'ext_rep.py', From 6b14ccb81bf266f1bdf4263a0b5eee55df3ff13f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 18 Feb 2024 07:51:59 +0000 Subject: [PATCH 129/229] Remove unnecessary meson_version field from project configuration --- meson.build | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/meson.build b/meson.build index 26db7085579..f00294b7e2f 100644 --- a/meson.build +++ b/meson.build @@ -2,8 +2,7 @@ project( 'SageMath', ['c', 'cpp', 'cython'], version: files('src/VERSION.txt'), - license: 'GPL v3', - meson_version: '>= 1.2.0', + license: 'GPL v3' ) # Python module From 087df3f0a0bacfaaa58c5ae9bd09be1b4c9cb81b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 18 Feb 2024 20:09:00 +0000 Subject: [PATCH 130/229] Update install_sources in meson files --- .../finite_dimensional_algebras/meson.build | 12 +- src/sage/algebras/fusion_rings/meson.build | 18 +- src/sage/algebras/letterplace/meson.build | 7 +- src/sage/algebras/lie_algebras/meson.build | 46 +- src/sage/algebras/meson.build | 84 ++-- src/sage/algebras/quatalg/meson.build | 7 +- src/sage/arith/meson.build | 22 +- src/sage/calculus/meson.build | 22 +- src/sage/calculus/transforms/meson.build | 6 +- src/sage/categories/examples/meson.build | 66 +-- src/sage/categories/meson.build | 398 +++++++++--------- src/sage/coding/codecan/meson.build | 5 +- src/sage/coding/meson.build | 71 ++-- src/sage/combinat/crystals/meson.build | 66 +-- src/sage/combinat/designs/meson.build | 42 +- src/sage/combinat/integer_lists/meson.build | 7 +- src/sage/combinat/matrices/meson.build | 8 +- src/sage/combinat/meson.build | 250 +++++------ src/sage/combinat/posets/meson.build | 28 +- .../rigged_configurations/meson.build | 46 +- src/sage/combinat/root_system/meson.build | 110 ++--- src/sage/combinat/words/meson.build | 34 +- src/sage/cpython/meson.build | 36 +- src/sage/crypto/meson.build | 28 +- src/sage/data_structures/meson.build | 28 +- .../dynamics/arithmetic_dynamics/meson.build | 22 +- .../dynamics/complex_dynamics/meson.build | 6 +- src/sage/dynamics/meson.build | 8 +- src/sage/ext/interpreters/meson.build | 16 +- src/sage/ext/meson.build | 20 +- src/sage/functions/meson.build | 42 +- src/sage/games/meson.build | 8 +- src/sage/geometry/meson.build | 40 +- .../combinatorial_polyhedron/meson.build | 5 +- src/sage/geometry/polyhedron/meson.build | 76 ++-- src/sage/geometry/triangulation/meson.build | 7 +- src/sage/graphs/base/meson.build | 22 +- src/sage/graphs/generators/meson.build | 24 +- .../graphs/graph_decompositions/meson.build | 16 +- src/sage/graphs/meson.build | 76 ++-- src/sage/groups/matrix_gps/meson.build | 48 +-- src/sage/groups/meson.build | 58 +-- src/sage/groups/perm_gps/meson.build | 18 +- .../groups/perm_gps/partn_ref/meson.build | 5 +- .../groups/perm_gps/partn_ref2/meson.build | 5 +- .../semimonomial_transformations/meson.build | 6 +- src/sage/interacts/meson.build | 16 +- src/sage/interfaces/meson.build | 120 +++--- src/sage/lfunctions/meson.build | 12 +- src/sage/libs/arb/meson.build | 34 +- src/sage/libs/coxeter3/meson.build | 12 +- src/sage/libs/eclib/meson.build | 16 +- src/sage/libs/flint/meson.build | 60 +-- src/sage/libs/gap/meson.build | 30 +- src/sage/libs/giac/meson.build | 7 +- src/sage/libs/glpk/meson.build | 14 +- src/sage/libs/gmp/meson.build | 26 +- src/sage/libs/gsl/meson.build | 132 +++--- src/sage/libs/lcalc/meson.build | 7 +- src/sage/libs/linbox/meson.build | 14 +- src/sage/libs/meson.build | 26 +- src/sage/libs/mpmath/meson.build | 7 +- src/sage/libs/ntl/meson.build | 90 ++-- src/sage/libs/pari/meson.build | 22 +- src/sage/libs/singular/meson.build | 20 +- src/sage/libs/symmetrica/meson.build | 6 +- src/sage/matrix/meson.build | 32 +- src/sage/matroids/meson.build | 30 +- src/sage/meson.build | 32 +- src/sage/misc/meson.build | 178 ++++---- src/sage/modular/arithgroup/meson.build | 22 +- src/sage/modular/meson.build | 26 +- src/sage/modular/modform/meson.build | 56 +-- src/sage/modular/modsym/meson.build | 32 +- src/sage/modular/pollack_stevens/meson.build | 18 +- src/sage/modules/meson.build | 52 +-- src/sage/modules/with_basis/meson.build | 14 +- src/sage/monoids/meson.build | 26 +- src/sage/numerical/backends/meson.build | 24 +- src/sage/numerical/meson.build | 16 +- src/sage/plot/meson.build | 62 +-- src/sage/plot/plot3d/meson.build | 28 +- src/sage/probability/meson.build | 6 +- src/sage/quadratic_forms/meson.build | 60 +-- src/sage/quivers/meson.build | 15 +- src/sage/rings/convert/meson.build | 6 +- src/sage/rings/finite_rings/meson.build | 48 +-- src/sage/rings/function_field/meson.build | 52 +-- src/sage/rings/meson.build | 162 +++---- src/sage/rings/number_field/meson.build | 54 +-- src/sage/rings/padics/meson.build | 96 ++--- src/sage/rings/polynomial/meson.build | 130 +++--- src/sage/rings/polynomial/pbori/meson.build | 42 +- src/sage/rings/polynomial/weil/meson.build | 6 +- src/sage/rings/semirings/meson.build | 6 +- src/sage/sat/meson.build | 6 +- src/sage/sat/solvers/meson.build | 12 +- src/sage/schemes/elliptic_curves/meson.build | 102 ++--- .../schemes/hyperelliptic_curves/meson.build | 34 +- src/sage/schemes/meson.build | 6 +- src/sage/schemes/toric/meson.build | 30 +- src/sage/sets/meson.build | 44 +- src/sage/stats/distributions/meson.build | 7 +- src/sage/stats/hmm/meson.build | 5 +- src/sage/stats/meson.build | 7 +- src/sage/structure/meson.build | 72 ++-- src/sage/symbolic/meson.build | 50 +-- src/sage/tests/meson.build | 44 +- 108 files changed, 2141 insertions(+), 2255 deletions(-) diff --git a/src/sage/algebras/finite_dimensional_algebras/meson.build b/src/sage/algebras/finite_dimensional_algebras/meson.build index 66cc5ec37dc..d821da5c6a4 100644 --- a/src/sage/algebras/finite_dimensional_algebras/meson.build +++ b/src/sage/algebras/finite_dimensional_algebras/meson.build @@ -1,10 +1,10 @@ py.install_sources( - 'all.py', - 'finite_dimensional_algebra.py', - 'finite_dimensional_algebra_element.pxd', - 'finite_dimensional_algebra_ideal.py', - 'finite_dimensional_algebra_morphism.py', - subdir: 'sage/algebras/finite_dimensional_algebras', + 'all.py', + 'finite_dimensional_algebra.py', + 'finite_dimensional_algebra_element.pxd', + 'finite_dimensional_algebra_ideal.py', + 'finite_dimensional_algebra_morphism.py', + subdir : 'sage/algebras/finite_dimensional_algebras' ) extension_data = { diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index aa113b3f9b0..63267a57e4f 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -1,13 +1,13 @@ py.install_sources( - 'all.py', - 'f_matrix.py', - 'fast_parallel_fmats_methods.pxd', - 'fast_parallel_fusion_ring_braid_repn.pxd', - 'fusion_double.py', - 'fusion_ring.py', - 'poly_tup_engine.pxd', - 'shm_managers.pxd', - subdir: 'sage/algebras/fusion_rings', + 'all.py', + 'f_matrix.py', + 'fast_parallel_fmats_methods.pxd', + 'fast_parallel_fusion_ring_braid_repn.pxd', + 'fusion_double.py', + 'fusion_ring.py', + 'poly_tup_engine.pxd', + 'shm_managers.pxd', + subdir : 'sage/algebras/fusion_rings' ) extension_data = { diff --git a/src/sage/algebras/letterplace/meson.build b/src/sage/algebras/letterplace/meson.build index 5437e721483..66044e74c46 100644 --- a/src/sage/algebras/letterplace/meson.build +++ b/src/sage/algebras/letterplace/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - 'all.py', - 'free_algebra_element_letterplace.pxd', - 'free_algebra_letterplace.pxd', - subdir: 'sage/algebras/letterplace', -) +py.install_sources('all.py', 'free_algebra_element_letterplace.pxd', 'free_algebra_letterplace.pxd', subdir : 'sage/algebras/letterplace') extension_data_cpp = { 'free_algebra_element_letterplace': files('free_algebra_element_letterplace.pyx'), diff --git a/src/sage/algebras/lie_algebras/meson.build b/src/sage/algebras/lie_algebras/meson.build index f151799266e..3396b638a15 100644 --- a/src/sage/algebras/lie_algebras/meson.build +++ b/src/sage/algebras/lie_algebras/meson.build @@ -1,27 +1,27 @@ py.install_sources( - 'abelian.py', - 'affine_lie_algebra.py', - 'all.py', - 'bch.py', - 'classical_lie_algebra.py', - 'examples.py', - 'free_lie_algebra.py', - 'heisenberg.py', - 'lie_algebra.py', - 'lie_algebra_element.pxd', - 'morphism.py', - 'nilpotent_lie_algebra.py', - 'onsager.py', - 'poincare_birkhoff_witt.py', - 'quotient.py', - 'rank_two_heisenberg_virasoro.py', - 'representation.py', - 'structure_coefficients.py', - 'subalgebra.py', - 'symplectic_derivation.py', - 'verma_module.py', - 'virasoro.py', - subdir: 'sage/algebras/lie_algebras', + 'abelian.py', + 'affine_lie_algebra.py', + 'all.py', + 'bch.py', + 'classical_lie_algebra.py', + 'examples.py', + 'free_lie_algebra.py', + 'heisenberg.py', + 'lie_algebra.py', + 'lie_algebra_element.pxd', + 'morphism.py', + 'nilpotent_lie_algebra.py', + 'onsager.py', + 'poincare_birkhoff_witt.py', + 'quotient.py', + 'rank_two_heisenberg_virasoro.py', + 'representation.py', + 'structure_coefficients.py', + 'subalgebra.py', + 'symplectic_derivation.py', + 'verma_module.py', + 'virasoro.py', + subdir : 'sage/algebras/lie_algebras' ) extension_data = { diff --git a/src/sage/algebras/meson.build b/src/sage/algebras/meson.build index dabac117a84..99e5902e935 100644 --- a/src/sage/algebras/meson.build +++ b/src/sage/algebras/meson.build @@ -1,46 +1,46 @@ py.install_sources( - 'affine_nil_temperley_lieb.py', - 'algebra.py', - 'all.py', - 'askey_wilson.py', - 'associated_graded.py', - 'catalog.py', - 'cellular_basis.py', - 'clifford_algebra.py', - 'clifford_algebra_element.pxd', - 'cluster_algebra.py', - 'commutative_dga.py', - 'down_up_algebra.py', - 'exterior_algebra_groebner.pxd', - 'finite_gca.py', - 'free_algebra.py', - 'free_algebra_element.py', - 'free_algebra_quotient.py', - 'free_algebra_quotient_element.py', - 'free_zinbiel_algebra.py', - 'group_algebra.py', - 'hall_algebra.py', - 'iwahori_hecke_algebra.py', - 'jordan_algebra.py', - 'nil_coxeter_algebra.py', - 'octonion_algebra.pxd', - 'orlik_solomon.py', - 'orlik_terao.py', - 'q_commuting_polynomials.py', - 'q_system.py', - 'quantum_clifford.py', - 'quantum_matrix_coordinate_algebra.py', - 'quaternion_algebra.py', - 'quaternion_algebra_element.py', - 'rational_cherednik_algebra.py', - 'schur_algebra.py', - 'shuffle_algebra.py', - 'splitting_algebra.py', - 'tensor_algebra.py', - 'weyl_algebra.py', - 'yangian.py', - 'yokonuma_hecke_algebra.py', - subdir: 'sage/algebras', + 'affine_nil_temperley_lieb.py', + 'algebra.py', + 'all.py', + 'askey_wilson.py', + 'associated_graded.py', + 'catalog.py', + 'cellular_basis.py', + 'clifford_algebra.py', + 'clifford_algebra_element.pxd', + 'cluster_algebra.py', + 'commutative_dga.py', + 'down_up_algebra.py', + 'exterior_algebra_groebner.pxd', + 'finite_gca.py', + 'free_algebra.py', + 'free_algebra_element.py', + 'free_algebra_quotient.py', + 'free_algebra_quotient_element.py', + 'free_zinbiel_algebra.py', + 'group_algebra.py', + 'hall_algebra.py', + 'iwahori_hecke_algebra.py', + 'jordan_algebra.py', + 'nil_coxeter_algebra.py', + 'octonion_algebra.pxd', + 'orlik_solomon.py', + 'orlik_terao.py', + 'q_commuting_polynomials.py', + 'q_system.py', + 'quantum_clifford.py', + 'quantum_matrix_coordinate_algebra.py', + 'quaternion_algebra.py', + 'quaternion_algebra_element.py', + 'rational_cherednik_algebra.py', + 'schur_algebra.py', + 'shuffle_algebra.py', + 'splitting_algebra.py', + 'tensor_algebra.py', + 'weyl_algebra.py', + 'yangian.py', + 'yokonuma_hecke_algebra.py', + subdir : 'sage/algebras' ) extension_data = { diff --git a/src/sage/algebras/quatalg/meson.build b/src/sage/algebras/quatalg/meson.build index 86f2d2fcf04..1461fd642bf 100644 --- a/src/sage/algebras/quatalg/meson.build +++ b/src/sage/algebras/quatalg/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - 'all.py', - 'quaternion_algebra.py', - 'quaternion_algebra_element.pxd', - subdir: 'sage/algebras/quatalg', -) +py.install_sources('all.py', 'quaternion_algebra.py', 'quaternion_algebra_element.pxd', subdir : 'sage/algebras/quatalg') extension_data_cpp = { 'quaternion_algebra_cython': files('quaternion_algebra_cython.pyx'), diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build index 8bcab22277f..bc13ece46cc 100644 --- a/src/sage/arith/meson.build +++ b/src/sage/arith/meson.build @@ -1,15 +1,15 @@ py.install_sources( - 'all.py', - 'all__sagemath_objects.py', - 'constants.pxd', - 'functions.pxd', - 'long.pxd', - 'misc.py', - 'multi_modular.pxd', - 'numerical_approx.pxd', - 'power.pxd', - 'rational_reconstruction.pxd', - subdir: 'sage/arith', + 'all.py', + 'all__sagemath_objects.py', + 'constants.pxd', + 'functions.pxd', + 'long.pxd', + 'misc.py', + 'multi_modular.pxd', + 'numerical_approx.pxd', + 'power.pxd', + 'rational_reconstruction.pxd', + subdir : 'sage/arith' ) extension_data = { diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index 39b6945d9f7..c7bfa57d390 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -1,14 +1,16 @@ py.install_sources( - 'all.py', - 'calculus.py', - 'desolvers.py', - 'functional.py', - 'functions.py', - 'predefined.py', - 'test_sympy.py', - 'tests.py', - 'wester.py', - subdir: 'sage/calculus', + 'all.py', + 'calculus.py', + 'desolvers.py', + 'functional.py', + 'functions.py', + 'interpolation.pxd', + 'ode.pxd', + 'predefined.py', + 'test_sympy.py', + 'tests.py', + 'wester.py', + subdir : 'sage/calculus' ) extension_data = { diff --git a/src/sage/calculus/transforms/meson.build b/src/sage/calculus/transforms/meson.build index 7da588ca3b5..c495788eb1f 100644 --- a/src/sage/calculus/transforms/meson.build +++ b/src/sage/calculus/transforms/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'dft.py', - subdir: 'sage/calculus/transforms', -) +py.install_sources('all.py', 'dft.py', 'dwt.pxd', 'fft.pxd', subdir : 'sage/calculus/transforms') extension_data = { 'dwt': files('dwt.pyx'), diff --git a/src/sage/categories/examples/meson.build b/src/sage/categories/examples/meson.build index b87b550709c..fb4389af196 100644 --- a/src/sage/categories/examples/meson.build +++ b/src/sage/categories/examples/meson.build @@ -1,37 +1,37 @@ py.install_sources( - 'algebras_with_basis.py', - 'all.py', - 'commutative_additive_monoids.py', - 'commutative_additive_semigroups.py', - 'coxeter_groups.py', - 'crystals.py', - 'cw_complexes.py', - 'facade_sets.py', - 'filtered_algebras_with_basis.py', - 'filtered_modules_with_basis.py', - 'finite_coxeter_groups.py', - 'finite_dimensional_algebras_with_basis.py', - 'finite_dimensional_lie_algebras_with_basis.py', - 'finite_enumerated_sets.py', - 'finite_monoids.py', - 'finite_semigroups.py', - 'finite_weyl_groups.py', - 'graded_connected_hopf_algebras_with_basis.py', - 'graded_modules_with_basis.py', - 'graphs.py', - 'hopf_algebras_with_basis.py', - 'infinite_enumerated_sets.py', - 'lie_algebras.py', - 'lie_algebras_with_basis.py', - 'magmas.py', - 'manifolds.py', - 'monoids.py', - 'posets.py', - 'semigroups.py', - 'sets_cat.py', - 'sets_with_grading.py', - 'with_realizations.py', - subdir: 'sage/categories/examples', + 'algebras_with_basis.py', + 'all.py', + 'commutative_additive_monoids.py', + 'commutative_additive_semigroups.py', + 'coxeter_groups.py', + 'crystals.py', + 'cw_complexes.py', + 'facade_sets.py', + 'filtered_algebras_with_basis.py', + 'filtered_modules_with_basis.py', + 'finite_coxeter_groups.py', + 'finite_dimensional_algebras_with_basis.py', + 'finite_dimensional_lie_algebras_with_basis.py', + 'finite_enumerated_sets.py', + 'finite_monoids.py', + 'finite_semigroups.py', + 'finite_weyl_groups.py', + 'graded_connected_hopf_algebras_with_basis.py', + 'graded_modules_with_basis.py', + 'graphs.py', + 'hopf_algebras_with_basis.py', + 'infinite_enumerated_sets.py', + 'lie_algebras.py', + 'lie_algebras_with_basis.py', + 'magmas.py', + 'manifolds.py', + 'monoids.py', + 'posets.py', + 'semigroups.py', + 'sets_cat.py', + 'sets_with_grading.py', + 'with_realizations.py', + subdir : 'sage/categories/examples' ) extension_data = { diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index 57965b62ec9..7ce68f4b5be 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -1,203 +1,203 @@ py.install_sources( - '__init__.py', - 'action.pxd', - 'additive_groups.py', - 'additive_magmas.py', - 'additive_monoids.py', - 'additive_semigroups.py', - 'affine_weyl_groups.py', - 'algebra_functor.py', - 'algebra_ideals.py', - 'algebra_modules.py', - 'algebras.py', - 'algebras_with_basis.py', - 'all.py', - 'all__sagemath_objects.py', - 'aperiodic_semigroups.py', - 'associative_algebras.py', - 'basic.py', - 'bialgebras.py', - 'bialgebras_with_basis.py', - 'bimodules.py', - 'cartesian_product.py', - 'category.py', - 'category_cy_helper.pxd', - 'category_singleton.pxd', - 'category_types.py', - 'category_with_axiom.py', - 'chain_complexes.py', - 'classical_crystals.py', - 'coalgebras.py', - 'coalgebras_with_basis.py', - 'commutative_additive_groups.py', - 'commutative_additive_monoids.py', - 'commutative_additive_semigroups.py', - 'commutative_algebra_ideals.py', - 'commutative_algebras.py', - 'commutative_ring_ideals.py', - 'commutative_rings.py', - 'complete_discrete_valuation.py', - 'complex_reflection_groups.py', - 'complex_reflection_or_generalized_coxeter_groups.py', - 'covariant_functorial_construction.py', - 'coxeter_group_algebras.py', - 'coxeter_groups.py', - 'crystals.py', - 'cw_complexes.py', - 'dedekind_domains.py', - 'discrete_valuation.py', - 'distributive_magmas_and_additive_magmas.py', - 'division_rings.py', - 'domains.py', - 'drinfeld_modules.py', - 'dual.py', - 'enumerated_sets.py', - 'euclidean_domains.py', - 'facade_sets.py', - 'fields.py', - 'filtered_algebras.py', - 'filtered_algebras_with_basis.py', - 'filtered_hopf_algebras_with_basis.py', - 'filtered_modules.py', - 'filtered_modules_with_basis.py', - 'finite_complex_reflection_groups.py', - 'finite_coxeter_groups.py', - 'finite_crystals.py', - 'finite_dimensional_algebras_with_basis.py', - 'finite_dimensional_bialgebras_with_basis.py', - 'finite_dimensional_coalgebras_with_basis.py', - 'finite_dimensional_graded_lie_algebras_with_basis.py', - 'finite_dimensional_hopf_algebras_with_basis.py', - 'finite_dimensional_lie_algebras_with_basis.py', - 'finite_dimensional_modules_with_basis.py', - 'finite_dimensional_nilpotent_lie_algebras_with_basis.py', - 'finite_dimensional_semisimple_algebras_with_basis.py', - 'finite_enumerated_sets.py', - 'finite_fields.py', - 'finite_groups.py', - 'finite_lattice_posets.py', - 'finite_monoids.py', - 'finite_permutation_groups.py', - 'finite_posets.py', - 'finite_semigroups.py', - 'finite_sets.py', - 'finite_weyl_groups.py', - 'finitely_generated_lambda_bracket_algebras.py', - 'finitely_generated_lie_conformal_algebras.py', - 'finitely_generated_magmas.py', - 'finitely_generated_semigroups.py', - 'function_fields.py', - 'functor.pxd', - 'g_sets.py', - 'gcd_domains.py', - 'generalized_coxeter_groups.py', - 'graded_algebras.py', - 'graded_algebras_with_basis.py', - 'graded_bialgebras.py', - 'graded_bialgebras_with_basis.py', - 'graded_coalgebras.py', - 'graded_coalgebras_with_basis.py', - 'graded_hopf_algebras.py', - 'graded_hopf_algebras_with_basis.py', - 'graded_lie_algebras.py', - 'graded_lie_algebras_with_basis.py', - 'graded_lie_conformal_algebras.py', - 'graded_modules.py', - 'graded_modules_with_basis.py', - 'graphs.py', - 'group_algebras.py', - 'groupoid.py', - 'groups.py', - 'h_trivial_semigroups.py', - 'hecke_modules.py', - 'highest_weight_crystals.py', - 'homset.py', - 'homsets.py', - 'hopf_algebras.py', - 'hopf_algebras_with_basis.py', - 'infinite_enumerated_sets.py', - 'integral_domains.py', - 'isomorphic_objects.py', - 'j_trivial_semigroups.py', - 'kac_moody_algebras.py', - 'l_trivial_semigroups.py', - 'lambda_bracket_algebras.py', - 'lambda_bracket_algebras_with_basis.py', - 'lattice_posets.py', - 'left_modules.py', - 'lie_algebras.py', - 'lie_algebras_with_basis.py', - 'lie_conformal_algebras.py', - 'lie_conformal_algebras_with_basis.py', - 'lie_groups.py', - 'loop_crystals.py', - 'magmas.py', - 'magmas_and_additive_magmas.py', - 'magmatic_algebras.py', - 'manifolds.py', - 'map.pxd', - 'matrix_algebras.py', - 'metric_spaces.py', - 'modular_abelian_varieties.py', - 'modules.py', - 'modules_with_basis.py', - 'monoid_algebras.py', - 'monoids.py', - 'morphism.pxd', - 'number_fields.py', - 'objects.py', - 'partially_ordered_monoids.py', - 'permutation_groups.py', - 'pointed_sets.py', - 'polyhedra.py', - 'poor_man_map.py', - 'posets.py', - 'primer.py', - 'principal_ideal_domains.py', - 'pushout.py', - 'quantum_group_representations.py', - 'quotient_fields.py', - 'quotients.py', - 'r_trivial_semigroups.py', - 'realizations.py', - 'regular_crystals.py', - 'regular_supercrystals.py', - 'right_modules.py', - 'ring_ideals.py', - 'rings.py', - 'rngs.py', - 'schemes.py', - 'semigroups.py', - 'semirings.py', - 'semisimple_algebras.py', - 'sets_cat.py', - 'sets_with_grading.py', - 'sets_with_partial_maps.py', - 'shephard_groups.py', - 'signed_tensor.py', - 'simplicial_complexes.py', - 'simplicial_sets.py', - 'subobjects.py', - 'subquotients.py', - 'super_algebras.py', - 'super_algebras_with_basis.py', - 'super_hopf_algebras_with_basis.py', - 'super_lie_conformal_algebras.py', - 'super_modules.py', - 'super_modules_with_basis.py', - 'supercommutative_algebras.py', - 'supercrystals.py', - 'tensor.py', - 'topological_spaces.py', - 'triangular_kac_moody_algebras.py', - 'tutorial.py', - 'unique_factorization_domains.py', - 'unital_algebras.py', - 'vector_bundles.py', - 'vector_spaces.py', - 'weyl_groups.py', - 'with_realizations.py', - subdir: 'sage/categories', + '__init__.py', + 'action.pxd', + 'additive_groups.py', + 'additive_magmas.py', + 'additive_monoids.py', + 'additive_semigroups.py', + 'affine_weyl_groups.py', + 'algebra_functor.py', + 'algebra_ideals.py', + 'algebra_modules.py', + 'algebras.py', + 'algebras_with_basis.py', + 'all.py', + 'all__sagemath_objects.py', + 'aperiodic_semigroups.py', + 'associative_algebras.py', + 'basic.py', + 'bialgebras.py', + 'bialgebras_with_basis.py', + 'bimodules.py', + 'cartesian_product.py', + 'category.py', + 'category_cy_helper.pxd', + 'category_singleton.pxd', + 'category_types.py', + 'category_with_axiom.py', + 'chain_complexes.py', + 'classical_crystals.py', + 'coalgebras.py', + 'coalgebras_with_basis.py', + 'commutative_additive_groups.py', + 'commutative_additive_monoids.py', + 'commutative_additive_semigroups.py', + 'commutative_algebra_ideals.py', + 'commutative_algebras.py', + 'commutative_ring_ideals.py', + 'commutative_rings.py', + 'complete_discrete_valuation.py', + 'complex_reflection_groups.py', + 'complex_reflection_or_generalized_coxeter_groups.py', + 'covariant_functorial_construction.py', + 'coxeter_group_algebras.py', + 'coxeter_groups.py', + 'crystals.py', + 'cw_complexes.py', + 'dedekind_domains.py', + 'discrete_valuation.py', + 'distributive_magmas_and_additive_magmas.py', + 'division_rings.py', + 'domains.py', + 'drinfeld_modules.py', + 'dual.py', + 'enumerated_sets.py', + 'euclidean_domains.py', + 'facade_sets.py', + 'fields.py', + 'filtered_algebras.py', + 'filtered_algebras_with_basis.py', + 'filtered_hopf_algebras_with_basis.py', + 'filtered_modules.py', + 'filtered_modules_with_basis.py', + 'finite_complex_reflection_groups.py', + 'finite_coxeter_groups.py', + 'finite_crystals.py', + 'finite_dimensional_algebras_with_basis.py', + 'finite_dimensional_bialgebras_with_basis.py', + 'finite_dimensional_coalgebras_with_basis.py', + 'finite_dimensional_graded_lie_algebras_with_basis.py', + 'finite_dimensional_hopf_algebras_with_basis.py', + 'finite_dimensional_lie_algebras_with_basis.py', + 'finite_dimensional_modules_with_basis.py', + 'finite_dimensional_nilpotent_lie_algebras_with_basis.py', + 'finite_dimensional_semisimple_algebras_with_basis.py', + 'finite_enumerated_sets.py', + 'finite_fields.py', + 'finite_groups.py', + 'finite_lattice_posets.py', + 'finite_monoids.py', + 'finite_permutation_groups.py', + 'finite_posets.py', + 'finite_semigroups.py', + 'finite_sets.py', + 'finite_weyl_groups.py', + 'finitely_generated_lambda_bracket_algebras.py', + 'finitely_generated_lie_conformal_algebras.py', + 'finitely_generated_magmas.py', + 'finitely_generated_semigroups.py', + 'function_fields.py', + 'functor.pxd', + 'g_sets.py', + 'gcd_domains.py', + 'generalized_coxeter_groups.py', + 'graded_algebras.py', + 'graded_algebras_with_basis.py', + 'graded_bialgebras.py', + 'graded_bialgebras_with_basis.py', + 'graded_coalgebras.py', + 'graded_coalgebras_with_basis.py', + 'graded_hopf_algebras.py', + 'graded_hopf_algebras_with_basis.py', + 'graded_lie_algebras.py', + 'graded_lie_algebras_with_basis.py', + 'graded_lie_conformal_algebras.py', + 'graded_modules.py', + 'graded_modules_with_basis.py', + 'graphs.py', + 'group_algebras.py', + 'groupoid.py', + 'groups.py', + 'h_trivial_semigroups.py', + 'hecke_modules.py', + 'highest_weight_crystals.py', + 'homset.py', + 'homsets.py', + 'hopf_algebras.py', + 'hopf_algebras_with_basis.py', + 'infinite_enumerated_sets.py', + 'integral_domains.py', + 'isomorphic_objects.py', + 'j_trivial_semigroups.py', + 'kac_moody_algebras.py', + 'l_trivial_semigroups.py', + 'lambda_bracket_algebras.py', + 'lambda_bracket_algebras_with_basis.py', + 'lattice_posets.py', + 'left_modules.py', + 'lie_algebras.py', + 'lie_algebras_with_basis.py', + 'lie_conformal_algebras.py', + 'lie_conformal_algebras_with_basis.py', + 'lie_groups.py', + 'loop_crystals.py', + 'magmas.py', + 'magmas_and_additive_magmas.py', + 'magmatic_algebras.py', + 'manifolds.py', + 'map.pxd', + 'matrix_algebras.py', + 'metric_spaces.py', + 'modular_abelian_varieties.py', + 'modules.py', + 'modules_with_basis.py', + 'monoid_algebras.py', + 'monoids.py', + 'morphism.pxd', + 'number_fields.py', + 'objects.py', + 'partially_ordered_monoids.py', + 'permutation_groups.py', + 'pointed_sets.py', + 'polyhedra.py', + 'poor_man_map.py', + 'posets.py', + 'primer.py', + 'principal_ideal_domains.py', + 'pushout.py', + 'quantum_group_representations.py', + 'quotient_fields.py', + 'quotients.py', + 'r_trivial_semigroups.py', + 'realizations.py', + 'regular_crystals.py', + 'regular_supercrystals.py', + 'right_modules.py', + 'ring_ideals.py', + 'rings.py', + 'rngs.py', + 'schemes.py', + 'semigroups.py', + 'semirings.py', + 'semisimple_algebras.py', + 'sets_cat.py', + 'sets_with_grading.py', + 'sets_with_partial_maps.py', + 'shephard_groups.py', + 'signed_tensor.py', + 'simplicial_complexes.py', + 'simplicial_sets.py', + 'subobjects.py', + 'subquotients.py', + 'super_algebras.py', + 'super_algebras_with_basis.py', + 'super_hopf_algebras_with_basis.py', + 'super_lie_conformal_algebras.py', + 'super_modules.py', + 'super_modules_with_basis.py', + 'supercommutative_algebras.py', + 'supercrystals.py', + 'tensor.py', + 'topological_spaces.py', + 'triangular_kac_moody_algebras.py', + 'tutorial.py', + 'unique_factorization_domains.py', + 'unital_algebras.py', + 'vector_bundles.py', + 'vector_spaces.py', + 'weyl_groups.py', + 'with_realizations.py', + subdir : 'sage/categories' ) extension_data = { diff --git a/src/sage/coding/codecan/meson.build b/src/sage/coding/codecan/meson.build index cbc24c21194..267b315a6a7 100644 --- a/src/sage/coding/codecan/meson.build +++ b/src/sage/coding/codecan/meson.build @@ -1,7 +1,4 @@ -py.install_sources( - 'all.py', - subdir: 'sage/coding/codecan', -) +py.install_sources('all.py', 'codecan.pxd', subdir : 'sage/coding/codecan') extension_data = { 'autgroup_can_label': files('autgroup_can_label.pyx'), diff --git a/src/sage/coding/meson.build b/src/sage/coding/meson.build index 52e933cbc50..811f783d8b2 100644 --- a/src/sage/coding/meson.build +++ b/src/sage/coding/meson.build @@ -1,39 +1,40 @@ py.install_sources( - 'abstract_code.py', - 'ag_code.py', - 'all.py', - 'bch_code.py', - 'bounds_catalog.py', - 'channel.py', - 'channels_catalog.py', - 'code_bounds.py', - 'code_constructions.py', - 'codes_catalog.py', - 'cyclic_code.py', - 'databases.py', - 'decoder.py', - 'decoders_catalog.py', - 'delsarte_bounds.py', - 'encoder.py', - 'encoders_catalog.py', - 'extended_code.py', - 'gabidulin_code.py', - 'golay_code.py', - 'goppa_code.py', - 'grs_code.py', - 'guava.py', - 'hamming_code.py', - 'information_set_decoder.py', - 'linear_code.py', - 'linear_code_no_metric.py', - 'linear_rank_metric.py', - 'parity_check_code.py', - 'punctured_code.py', - 'reed_muller_code.py', - 'self_dual_codes.py', - 'subfield_subcode.py', - 'two_weight_db.py', - subdir: 'sage/coding', + 'abstract_code.py', + 'ag_code.py', + 'all.py', + 'bch_code.py', + 'binary_code.pxd', + 'bounds_catalog.py', + 'channel.py', + 'channels_catalog.py', + 'code_bounds.py', + 'code_constructions.py', + 'codes_catalog.py', + 'cyclic_code.py', + 'databases.py', + 'decoder.py', + 'decoders_catalog.py', + 'delsarte_bounds.py', + 'encoder.py', + 'encoders_catalog.py', + 'extended_code.py', + 'gabidulin_code.py', + 'golay_code.py', + 'goppa_code.py', + 'grs_code.py', + 'guava.py', + 'hamming_code.py', + 'information_set_decoder.py', + 'linear_code.py', + 'linear_code_no_metric.py', + 'linear_rank_metric.py', + 'parity_check_code.py', + 'punctured_code.py', + 'reed_muller_code.py', + 'self_dual_codes.py', + 'subfield_subcode.py', + 'two_weight_db.py', + subdir : 'sage/coding' ) extension_data = { diff --git a/src/sage/combinat/crystals/meson.build b/src/sage/combinat/crystals/meson.build index 92fad748c28..389ba255d05 100644 --- a/src/sage/combinat/crystals/meson.build +++ b/src/sage/combinat/crystals/meson.build @@ -1,37 +1,37 @@ py.install_sources( - 'affine.py', - 'affine_factorization.py', - 'affinization.py', - 'alcove_path.py', - 'all.py', - 'bkk_crystals.py', - 'catalog.py', - 'catalog_elementary_crystals.py', - 'catalog_infinity_crystals.py', - 'catalog_kirillov_reshetikhin.py', - 'crystals.py', - 'direct_sum.py', - 'elementary_crystals.py', - 'fast_crystals.py', - 'fully_commutative_stable_grothendieck.py', - 'generalized_young_walls.py', - 'highest_weight_crystals.py', - 'induced_structure.py', - 'infinity_crystals.py', - 'kac_modules.py', - 'kirillov_reshetikhin.py', - 'kyoto_path_model.py', - 'littelmann_path.py', - 'monomial_crystals.py', - 'multisegments.py', - 'mv_polytopes.py', - 'pbw_crystal.py', - 'polyhedral_realization.py', - 'star_crystal.py', - 'subcrystal.py', - 'tensor_product.py', - 'virtual_crystal.py', - subdir: 'sage/combinat/crystals', + 'affine.py', + 'affine_factorization.py', + 'affinization.py', + 'alcove_path.py', + 'all.py', + 'bkk_crystals.py', + 'catalog.py', + 'catalog_elementary_crystals.py', + 'catalog_infinity_crystals.py', + 'catalog_kirillov_reshetikhin.py', + 'crystals.py', + 'direct_sum.py', + 'elementary_crystals.py', + 'fast_crystals.py', + 'fully_commutative_stable_grothendieck.py', + 'generalized_young_walls.py', + 'highest_weight_crystals.py', + 'induced_structure.py', + 'infinity_crystals.py', + 'kac_modules.py', + 'kirillov_reshetikhin.py', + 'kyoto_path_model.py', + 'littelmann_path.py', + 'monomial_crystals.py', + 'multisegments.py', + 'mv_polytopes.py', + 'pbw_crystal.py', + 'polyhedral_realization.py', + 'star_crystal.py', + 'subcrystal.py', + 'tensor_product.py', + 'virtual_crystal.py', + subdir : 'sage/combinat/crystals' ) extension_data = { diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build index a36c92e08e2..d3ebc844d69 100644 --- a/src/sage/combinat/designs/meson.build +++ b/src/sage/combinat/designs/meson.build @@ -1,25 +1,25 @@ py.install_sources( - 'MOLS_handbook_data.py', - 'all.py', - 'bibd.py', - 'block_design.py', - 'covering_array.py', - 'covering_design.py', - 'database.py', - 'design_catalog.py', - 'designs_pyx.pxd', - 'difference_family.py', - 'difference_matrices.py', - 'ext_rep.py', - 'group_divisible_designs.py', - 'incidence_structures.py', - 'latin_squares.py', - 'orthogonal_arrays.py', - 'orthogonal_arrays_build_recursive.py', - 'resolvable_bibd.py', - 'steiner_quadruple_systems.py', - 'twographs.py', - subdir: 'sage/combinat/designs', + 'MOLS_handbook_data.py', + 'all.py', + 'bibd.py', + 'block_design.py', + 'covering_array.py', + 'covering_design.py', + 'database.py', + 'design_catalog.py', + 'designs_pyx.pxd', + 'difference_family.py', + 'difference_matrices.py', + 'ext_rep.py', + 'group_divisible_designs.py', + 'incidence_structures.py', + 'latin_squares.py', + 'orthogonal_arrays.py', + 'orthogonal_arrays_build_recursive.py', + 'resolvable_bibd.py', + 'steiner_quadruple_systems.py', + 'twographs.py', + subdir : 'sage/combinat/designs' ) extension_data = { diff --git a/src/sage/combinat/integer_lists/meson.build b/src/sage/combinat/integer_lists/meson.build index dd60b6049d0..35aba6e8937 100644 --- a/src/sage/combinat/integer_lists/meson.build +++ b/src/sage/combinat/integer_lists/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - '__init__.py', - 'lists.py', - 'nn.py', - subdir: 'sage/combinat/integer_lists', -) +py.install_sources('__init__.py', 'lists.py', 'nn.py', subdir : 'sage/combinat/integer_lists') extension_data = { 'base': files('base.pyx'), diff --git a/src/sage/combinat/matrices/meson.build b/src/sage/combinat/matrices/meson.build index 63398335f03..ab79262150a 100644 --- a/src/sage/combinat/matrices/meson.build +++ b/src/sage/combinat/matrices/meson.build @@ -1,10 +1,4 @@ -py.install_sources( - 'all.py', - 'dlxcpp.py', - 'hadamard_matrix.py', - 'latin.py', - subdir: 'sage/combinat/matrices', -) +py.install_sources('all.py', 'dlxcpp.py', 'hadamard_matrix.py', 'latin.py', subdir : 'sage/combinat/matrices') extension_data_cpp = { 'dancing_links': files('dancing_links.pyx'), diff --git a/src/sage/combinat/meson.build b/src/sage/combinat/meson.build index b6899dc3e3d..4bfd6aab65d 100644 --- a/src/sage/combinat/meson.build +++ b/src/sage/combinat/meson.build @@ -1,129 +1,129 @@ py.install_sources( - 'abstract_tree.py', - 'affine_permutation.py', - 'algebraic_combinatorics.py', - 'all.py', - 'alternating_sign_matrix.py', - 'backtrack.py', - 'baxter_permutations.py', - 'bijectionist.py', - 'binary_recurrence_sequences.py', - 'binary_tree.py', - 'blob_algebra.py', - 'cartesian_product.py', - 'catalog_partitions.py', - 'cluster_complex.py', - 'colored_permutations.py', - 'combinat.py', - 'combination.py', - 'combinatorial_map.py', - 'composition.py', - 'composition_signed.py', - 'composition_tableau.py', - 'constellation.py', - 'core.py', - 'counting.py', - 'cyclic_sieving_phenomenon.py', - 'decorated_permutation.py', - 'derangements.py', - 'descent_algebra.py', - 'diagram.py', - 'diagram_algebras.py', - 'dlx.py', - 'dyck_word.py', - 'e_one_star.py', - 'enumerated_sets.py', - 'family.py', - 'finite_state_machine.py', - 'finite_state_machine_generators.py', - 'fqsym.py', - 'free_dendriform_algebra.py', - 'free_module.py', - 'free_prelie_algebra.py', - 'fully_commutative_elements.py', - 'fully_packed_loop.py', - 'gelfand_tsetlin_patterns.py', - 'graph_path.py', - 'gray_codes.py', - 'grossman_larson_algebras.py', - 'growth.py', - 'hall_polynomial.py', - 'hillman_grassl.py', - 'integer_matrices.py', - 'integer_vector.py', - 'integer_vector_weighted.py', - 'integer_vectors_mod_permgroup.py', - 'interval_posets.py', - 'k_tableau.py', - 'kazhdan_lusztig.py', - 'key_polynomial.py', - 'knutson_tao_puzzles.py', - 'lr_tableau.py', - 'misc.py', - 'multiset_partition_into_sets_ordered.py', - 'necklace.py', - 'non_decreasing_parking_function.py', - 'nu_dyck_word.py', - 'nu_tamari_lattice.py', - 'ordered_tree.py', - 'output.py', - 'parallelogram_polyomino.py', - 'parking_functions.py', - 'partition.py', - 'partition_algebra.py', - 'partition_kleshchev.py', - 'partition_shifting_algebras.py', - 'partition_tuple.py', - 'perfect_matching.py', - 'permutation.py', - 'plane_partition.py', - 'q_analogues.py', - 'quickref.py', - 'ranker.py', - 'recognizable_series.py', - 'regular_sequence.py', - 'restricted_growth.py', - 'ribbon.py', - 'ribbon_shaped_tableau.py', - 'ribbon_tableau.py', - 'rooted_tree.py', - 'rsk.py', - 'schubert_polynomial.py', - 'set_partition.py', - 'set_partition_ordered.py', - 'shard_order.py', - 'shifted_primed_tableau.py', - 'shuffle.py', - 'sidon_sets.py', - 'similarity_class_type.py', - 'sine_gordon.py', - 'six_vertex_model.py', - 'skew_partition.py', - 'skew_tableau.py', - 'sloane_functions.py', - 'specht_module.py', - 'subset.py', - 'subsets_hereditary.py', - 'subsets_pairwise.py', - 'subword.py', - 'subword_complex.py', - 'super_tableau.py', - 'superpartition.py', - 'symmetric_group_algebra.py', - 'symmetric_group_representations.py', - 't_sequences.py', - 'tableau.py', - 'tableau_residues.py', - 'tableau_tuple.py', - 'tamari_lattices.py', - 'tiling.py', - 'tools.py', - 'triangles_FHM.py', - 'tuple.py', - 'tutorial.py', - 'vector_partition.py', - 'yang_baxter_graph.py', - subdir: 'sage/combinat', + 'abstract_tree.py', + 'affine_permutation.py', + 'algebraic_combinatorics.py', + 'all.py', + 'alternating_sign_matrix.py', + 'backtrack.py', + 'baxter_permutations.py', + 'bijectionist.py', + 'binary_recurrence_sequences.py', + 'binary_tree.py', + 'blob_algebra.py', + 'cartesian_product.py', + 'catalog_partitions.py', + 'cluster_complex.py', + 'colored_permutations.py', + 'combinat.py', + 'combination.py', + 'combinatorial_map.py', + 'composition.py', + 'composition_signed.py', + 'composition_tableau.py', + 'constellation.py', + 'core.py', + 'counting.py', + 'cyclic_sieving_phenomenon.py', + 'decorated_permutation.py', + 'derangements.py', + 'descent_algebra.py', + 'diagram.py', + 'diagram_algebras.py', + 'dlx.py', + 'dyck_word.py', + 'e_one_star.py', + 'enumerated_sets.py', + 'family.py', + 'finite_state_machine.py', + 'finite_state_machine_generators.py', + 'fqsym.py', + 'free_dendriform_algebra.py', + 'free_module.py', + 'free_prelie_algebra.py', + 'fully_commutative_elements.py', + 'fully_packed_loop.py', + 'gelfand_tsetlin_patterns.py', + 'graph_path.py', + 'gray_codes.py', + 'grossman_larson_algebras.py', + 'growth.py', + 'hall_polynomial.py', + 'hillman_grassl.py', + 'integer_matrices.py', + 'integer_vector.py', + 'integer_vector_weighted.py', + 'integer_vectors_mod_permgroup.py', + 'interval_posets.py', + 'k_tableau.py', + 'kazhdan_lusztig.py', + 'key_polynomial.py', + 'knutson_tao_puzzles.py', + 'lr_tableau.py', + 'misc.py', + 'multiset_partition_into_sets_ordered.py', + 'necklace.py', + 'non_decreasing_parking_function.py', + 'nu_dyck_word.py', + 'nu_tamari_lattice.py', + 'ordered_tree.py', + 'output.py', + 'parallelogram_polyomino.py', + 'parking_functions.py', + 'partition.py', + 'partition_algebra.py', + 'partition_kleshchev.py', + 'partition_shifting_algebras.py', + 'partition_tuple.py', + 'perfect_matching.py', + 'permutation.py', + 'plane_partition.py', + 'q_analogues.py', + 'quickref.py', + 'ranker.py', + 'recognizable_series.py', + 'regular_sequence.py', + 'restricted_growth.py', + 'ribbon.py', + 'ribbon_shaped_tableau.py', + 'ribbon_tableau.py', + 'rooted_tree.py', + 'rsk.py', + 'schubert_polynomial.py', + 'set_partition.py', + 'set_partition_ordered.py', + 'shard_order.py', + 'shifted_primed_tableau.py', + 'shuffle.py', + 'sidon_sets.py', + 'similarity_class_type.py', + 'sine_gordon.py', + 'six_vertex_model.py', + 'skew_partition.py', + 'skew_tableau.py', + 'sloane_functions.py', + 'specht_module.py', + 'subset.py', + 'subsets_hereditary.py', + 'subsets_pairwise.py', + 'subword.py', + 'subword_complex.py', + 'super_tableau.py', + 'superpartition.py', + 'symmetric_group_algebra.py', + 'symmetric_group_representations.py', + 't_sequences.py', + 'tableau.py', + 'tableau_residues.py', + 'tableau_tuple.py', + 'tamari_lattices.py', + 'tiling.py', + 'tools.py', + 'triangles_FHM.py', + 'tuple.py', + 'tutorial.py', + 'vector_partition.py', + 'yang_baxter_graph.py', + subdir : 'sage/combinat' ) extension_data = { diff --git a/src/sage/combinat/posets/meson.build b/src/sage/combinat/posets/meson.build index 11fd51fbc62..bf383598438 100644 --- a/src/sage/combinat/posets/meson.build +++ b/src/sage/combinat/posets/meson.build @@ -1,18 +1,18 @@ py.install_sources( - 'all.py', - 'cartesian_product.py', - 'd_complete.py', - 'elements.py', - 'forest.py', - 'hasse_diagram.py', - 'incidence_algebras.py', - 'lattices.py', - 'linear_extensions.py', - 'mobile.py', - 'moebius_algebra.py', - 'poset_examples.py', - 'posets.py', - subdir: 'sage/combinat/posets', + 'all.py', + 'cartesian_product.py', + 'd_complete.py', + 'elements.py', + 'forest.py', + 'hasse_diagram.py', + 'incidence_algebras.py', + 'lattices.py', + 'linear_extensions.py', + 'mobile.py', + 'moebius_algebra.py', + 'poset_examples.py', + 'posets.py', + subdir : 'sage/combinat/posets' ) extension_data = { diff --git a/src/sage/combinat/rigged_configurations/meson.build b/src/sage/combinat/rigged_configurations/meson.build index 7d6630b9378..f71215e3eae 100644 --- a/src/sage/combinat/rigged_configurations/meson.build +++ b/src/sage/combinat/rigged_configurations/meson.build @@ -1,27 +1,27 @@ py.install_sources( - 'all.py', - 'bij_abstract_class.py', - 'bij_infinity.py', - 'bij_type_A.py', - 'bij_type_A2_dual.py', - 'bij_type_A2_even.py', - 'bij_type_A2_odd.py', - 'bij_type_B.py', - 'bij_type_C.py', - 'bij_type_D.py', - 'bij_type_D_tri.py', - 'bij_type_D_twisted.py', - 'bij_type_E67.py', - 'bijection.py', - 'kleber_tree.py', - 'kr_tableaux.py', - 'rc_crystal.py', - 'rc_infinity.py', - 'rigged_configuration_element.py', - 'rigged_configurations.py', - 'tensor_product_kr_tableaux.py', - 'tensor_product_kr_tableaux_element.py', - subdir: 'sage/combinat/rigged_configurations', + 'all.py', + 'bij_abstract_class.py', + 'bij_infinity.py', + 'bij_type_A.py', + 'bij_type_A2_dual.py', + 'bij_type_A2_even.py', + 'bij_type_A2_odd.py', + 'bij_type_B.py', + 'bij_type_C.py', + 'bij_type_D.py', + 'bij_type_D_tri.py', + 'bij_type_D_twisted.py', + 'bij_type_E67.py', + 'bijection.py', + 'kleber_tree.py', + 'kr_tableaux.py', + 'rc_crystal.py', + 'rc_infinity.py', + 'rigged_configuration_element.py', + 'rigged_configurations.py', + 'tensor_product_kr_tableaux.py', + 'tensor_product_kr_tableaux_element.py', + subdir : 'sage/combinat/rigged_configurations' ) extension_data = { diff --git a/src/sage/combinat/root_system/meson.build b/src/sage/combinat/root_system/meson.build index 344a26639f7..c5defca25ae 100644 --- a/src/sage/combinat/root_system/meson.build +++ b/src/sage/combinat/root_system/meson.build @@ -1,59 +1,59 @@ py.install_sources( - 'all.py', - 'ambient_space.py', - 'associahedron.py', - 'braid_move_calculator.py', - 'branching_rules.py', - 'cartan_matrix.py', - 'cartan_type.py', - 'coxeter_group.py', - 'coxeter_matrix.py', - 'coxeter_type.py', - 'dynkin_diagram.py', - 'extended_affine_weyl_group.py', - 'fundamental_group.py', - 'hecke_algebra_representation.py', - 'integrable_representations.py', - 'non_symmetric_macdonald_polynomials.py', - 'pieri_factors.py', - 'plot.py', - 'reflection_group_complex.py', - 'reflection_group_real.py', - 'root_lattice_realization_algebras.py', - 'root_lattice_realizations.py', - 'root_space.py', - 'root_system.py', - 'type_A.py', - 'type_A_affine.py', - 'type_A_infinity.py', - 'type_B.py', - 'type_BC_affine.py', - 'type_B_affine.py', - 'type_C.py', - 'type_C_affine.py', - 'type_D.py', - 'type_D_affine.py', - 'type_E.py', - 'type_E_affine.py', - 'type_F.py', - 'type_F_affine.py', - 'type_G.py', - 'type_G_affine.py', - 'type_H.py', - 'type_I.py', - 'type_Q.py', - 'type_affine.py', - 'type_dual.py', - 'type_folded.py', - 'type_marked.py', - 'type_reducible.py', - 'type_relabel.py', - 'type_super_A.py', - 'weight_lattice_realizations.py', - 'weight_space.py', - 'weyl_characters.py', - 'weyl_group.py', - subdir: 'sage/combinat/root_system', + 'all.py', + 'ambient_space.py', + 'associahedron.py', + 'braid_move_calculator.py', + 'branching_rules.py', + 'cartan_matrix.py', + 'cartan_type.py', + 'coxeter_group.py', + 'coxeter_matrix.py', + 'coxeter_type.py', + 'dynkin_diagram.py', + 'extended_affine_weyl_group.py', + 'fundamental_group.py', + 'hecke_algebra_representation.py', + 'integrable_representations.py', + 'non_symmetric_macdonald_polynomials.py', + 'pieri_factors.py', + 'plot.py', + 'reflection_group_complex.py', + 'reflection_group_real.py', + 'root_lattice_realization_algebras.py', + 'root_lattice_realizations.py', + 'root_space.py', + 'root_system.py', + 'type_A.py', + 'type_A_affine.py', + 'type_A_infinity.py', + 'type_B.py', + 'type_BC_affine.py', + 'type_B_affine.py', + 'type_C.py', + 'type_C_affine.py', + 'type_D.py', + 'type_D_affine.py', + 'type_E.py', + 'type_E_affine.py', + 'type_F.py', + 'type_F_affine.py', + 'type_G.py', + 'type_G_affine.py', + 'type_H.py', + 'type_I.py', + 'type_Q.py', + 'type_affine.py', + 'type_dual.py', + 'type_folded.py', + 'type_marked.py', + 'type_reducible.py', + 'type_relabel.py', + 'type_super_A.py', + 'weight_lattice_realizations.py', + 'weight_space.py', + 'weyl_characters.py', + 'weyl_group.py', + subdir : 'sage/combinat/root_system' ) extension_data = { diff --git a/src/sage/combinat/words/meson.build b/src/sage/combinat/words/meson.build index f9e0acd56a0..76a04423785 100644 --- a/src/sage/combinat/words/meson.build +++ b/src/sage/combinat/words/meson.build @@ -1,21 +1,21 @@ py.install_sources( - 'abstract_word.py', - 'all.py', - 'alphabet.py', - 'finite_word.py', - 'infinite_word.py', - 'lyndon_word.py', - 'morphic.py', - 'morphism.py', - 'paths.py', - 'shuffle_product.py', - 'suffix_trees.py', - 'word.py', - 'word_generators.py', - 'word_infinite_datatypes.py', - 'word_options.py', - 'words.py', - subdir: 'sage/combinat/words', + 'abstract_word.py', + 'all.py', + 'alphabet.py', + 'finite_word.py', + 'infinite_word.py', + 'lyndon_word.py', + 'morphic.py', + 'morphism.py', + 'paths.py', + 'shuffle_product.py', + 'suffix_trees.py', + 'word.py', + 'word_generators.py', + 'word_infinite_datatypes.py', + 'word_options.py', + 'words.py', + subdir : 'sage/combinat/words' ) extension_data = { diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build index b4b83289127..4081613955a 100644 --- a/src/sage/cpython/meson.build +++ b/src/sage/cpython/meson.build @@ -1,22 +1,22 @@ py.install_sources( - '__init__.py', - '_py2_random.py', - 'all.py', - 'cython_metaclass.h', - 'cython_metaclass.pxd', - 'dict_del_by_value.pxd', - 'dict_internal.h', - 'getattr.pxd', - 'pycore_long.h', - 'pycore_long.pxd', - 'python_debug.h', - 'python_debug.pxd', - 'pyx_visit.h', - 'string.pxd', - 'string_impl.h', - 'type.pxd', - 'wrapperdescr.pxd', - subdir: 'sage/cpython', + '__init__.py', + '_py2_random.py', + 'all.py', + 'cython_metaclass.h', + 'cython_metaclass.pxd', + 'dict_del_by_value.pxd', + 'dict_internal.h', + 'getattr.pxd', + 'pycore_long.h', + 'pycore_long.pxd', + 'python_debug.h', + 'python_debug.pxd', + 'pyx_visit.h', + 'string.pxd', + 'string_impl.h', + 'type.pxd', + 'wrapperdescr.pxd', + subdir : 'sage/cpython' ) extension_data = { diff --git a/src/sage/crypto/meson.build b/src/sage/crypto/meson.build index a6a32908e5e..5a40424281b 100644 --- a/src/sage/crypto/meson.build +++ b/src/sage/crypto/meson.build @@ -1,18 +1,18 @@ py.install_sources( - '__init__.py', - 'all.py', - 'cipher.py', - 'classical.py', - 'classical_cipher.py', - 'cryptosystem.py', - 'lattice.py', - 'lfsr.py', - 'lwe.py', - 'sboxes.py', - 'stream.py', - 'stream_cipher.py', - 'util.py', - subdir: 'sage/crypto', + '__init__.py', + 'all.py', + 'cipher.py', + 'classical.py', + 'classical_cipher.py', + 'cryptosystem.py', + 'lattice.py', + 'lfsr.py', + 'lwe.py', + 'sboxes.py', + 'stream.py', + 'stream_cipher.py', + 'util.py', + subdir : 'sage/crypto' ) extension_data = { diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index 4582d9bcb75..dbbf1476444 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -1,18 +1,18 @@ py.install_sources( - '__init__.py', - 'all.py', - 'binary_matrix.pxd', - 'binary_search.pxd', - 'bitset.pxd', - 'bitset_base.pxd', - 'bitset_intrinsics.h', - 'blas_dict.pxd', - 'bounded_integer_sequences.pxd', - 'list_of_pairs.pxd', - 'mutable_poset.py', - 'sparse_bitset.pxd', - 'stream.py', - subdir: 'sage/data_structures', + '__init__.py', + 'all.py', + 'binary_matrix.pxd', + 'binary_search.pxd', + 'bitset.pxd', + 'bitset_base.pxd', + 'bitset_intrinsics.h', + 'blas_dict.pxd', + 'bounded_integer_sequences.pxd', + 'list_of_pairs.pxd', + 'mutable_poset.py', + 'sparse_bitset.pxd', + 'stream.py', + subdir : 'sage/data_structures' ) extension_data = { diff --git a/src/sage/dynamics/arithmetic_dynamics/meson.build b/src/sage/dynamics/arithmetic_dynamics/meson.build index 45d4d11c73d..1bfb5e38d9a 100644 --- a/src/sage/dynamics/arithmetic_dynamics/meson.build +++ b/src/sage/dynamics/arithmetic_dynamics/meson.build @@ -1,15 +1,15 @@ py.install_sources( - 'affine_ds.py', - 'all.py', - 'berkovich_ds.py', - 'dynamical_semigroup.py', - 'endPN_automorphism_group.py', - 'endPN_minimal_model.py', - 'generic_ds.py', - 'product_projective_ds.py', - 'projective_ds.py', - 'wehlerK3.py', - subdir: 'sage/dynamics/arithmetic_dynamics', + 'affine_ds.py', + 'all.py', + 'berkovich_ds.py', + 'dynamical_semigroup.py', + 'endPN_automorphism_group.py', + 'endPN_minimal_model.py', + 'generic_ds.py', + 'product_projective_ds.py', + 'projective_ds.py', + 'wehlerK3.py', + subdir : 'sage/dynamics/arithmetic_dynamics' ) extension_data = { diff --git a/src/sage/dynamics/complex_dynamics/meson.build b/src/sage/dynamics/complex_dynamics/meson.build index 22426829362..5d69ca71714 100644 --- a/src/sage/dynamics/complex_dynamics/meson.build +++ b/src/sage/dynamics/complex_dynamics/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'mandel_julia.py', - subdir: 'sage/dynamics/complex_dynamics', -) +py.install_sources('all.py', 'mandel_julia.py', subdir : 'sage/dynamics/complex_dynamics') extension_data = { 'mandel_julia_helper': files('mandel_julia_helper.pyx'), diff --git a/src/sage/dynamics/meson.build b/src/sage/dynamics/meson.build index 3d9a73c29a2..8c3f511f3d4 100644 --- a/src/sage/dynamics/meson.build +++ b/src/sage/dynamics/meson.build @@ -1,10 +1,4 @@ -py.install_sources( - 'all.py', - 'finite_dynamical_system.py', - 'finite_dynamical_system_catalog.py', - 'surface_dynamics_deprecation.py', - subdir: 'sage/dynamics', -) +py.install_sources('all.py', 'finite_dynamical_system.py', 'finite_dynamical_system_catalog.py', 'surface_dynamics_deprecation.py', subdir : 'sage/dynamics') subdir('arithmetic_dynamics') install_subdir('cellular_automata', install_dir: sage_install_dir / 'dynamics') diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index 125ec37304c..22f787061b8 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -1,12 +1,12 @@ py.install_sources( - 'all.py', - 'wrapper_cc.pxd', - 'wrapper_cdf.pxd', - 'wrapper_el.pxd', - 'wrapper_py.pxd', - 'wrapper_rdf.pxd', - 'wrapper_rr.pxd', - subdir: 'sage/ext/interpreters', + 'all.py', + 'wrapper_cc.pxd', + 'wrapper_cdf.pxd', + 'wrapper_el.pxd', + 'wrapper_py.pxd', + 'wrapper_rdf.pxd', + 'wrapper_rr.pxd', + subdir : 'sage/ext/interpreters' ) extension_data = { diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 4615b24361e..fdc4fe44813 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -1,14 +1,14 @@ py.install_sources( - 'all__sagemath_objects.py', - 'ccobject.h', - 'cplusplus.pxd', - 'fast_callable.pxd', - 'fast_eval.pxd', - 'memory_allocator.pxd', - 'mod_int.h', - 'mod_int.pxd', - 'stdsage.pxd', - subdir: 'sage/ext', + 'all__sagemath_objects.py', + 'ccobject.h', + 'cplusplus.pxd', + 'fast_callable.pxd', + 'fast_eval.pxd', + 'memory_allocator.pxd', + 'mod_int.h', + 'mod_int.pxd', + 'stdsage.pxd', + subdir : 'sage/ext' ) extension_data = { diff --git a/src/sage/functions/meson.build b/src/sage/functions/meson.build index 23e895c0e47..e1f77eb331e 100644 --- a/src/sage/functions/meson.build +++ b/src/sage/functions/meson.build @@ -1,25 +1,25 @@ py.install_sources( - 'airy.py', - 'all.py', - 'bessel.py', - 'error.py', - 'exp_integral.py', - 'gamma.py', - 'generalized.py', - 'hyperbolic.py', - 'hypergeometric.py', - 'jacobi.py', - 'log.py', - 'min_max.py', - 'orthogonal_polys.py', - 'other.py', - 'piecewise.py', - 'special.py', - 'spike_function.py', - 'transcendental.py', - 'trig.py', - 'wigner.py', - subdir: 'sage/functions', + 'airy.py', + 'all.py', + 'bessel.py', + 'error.py', + 'exp_integral.py', + 'gamma.py', + 'generalized.py', + 'hyperbolic.py', + 'hypergeometric.py', + 'jacobi.py', + 'log.py', + 'min_max.py', + 'orthogonal_polys.py', + 'other.py', + 'piecewise.py', + 'special.py', + 'spike_function.py', + 'transcendental.py', + 'trig.py', + 'wigner.py', + subdir : 'sage/functions' ) extension_data = { diff --git a/src/sage/games/meson.build b/src/sage/games/meson.build index bc0092e4bf2..6bc0e802a68 100644 --- a/src/sage/games/meson.build +++ b/src/sage/games/meson.build @@ -1,10 +1,4 @@ -py.install_sources( - 'all.py', - 'hexad.py', - 'quantumino.py', - 'sudoku.py', - subdir: 'sage/games', -) +py.install_sources('all.py', 'hexad.py', 'quantumino.py', 'sudoku.py', subdir : 'sage/games') extension_data = { 'sudoku_backtrack': files('sudoku_backtrack.pyx'), diff --git a/src/sage/geometry/meson.build b/src/sage/geometry/meson.build index 57853c8ae15..c4a14f0d51e 100644 --- a/src/sage/geometry/meson.build +++ b/src/sage/geometry/meson.build @@ -1,24 +1,24 @@ py.install_sources( - 'all.py', - 'cone.py', - 'cone_catalog.py', - 'convex_set.py', - 'fan.py', - 'fan_isomorphism.py', - 'fan_morphism.py', - 'hasse_diagram.py', - 'integral_points.py', - 'lattice_polytope.py', - 'linear_expression.py', - 'newton_polygon.py', - 'polyhedral_complex.py', - 'pseudolines.py', - 'relative_interior.py', - 'ribbon_graph.py', - 'toric_lattice.py', - 'toric_plotter.py', - 'voronoi_diagram.py', - subdir: 'sage/geometry', + 'all.py', + 'cone.py', + 'cone_catalog.py', + 'convex_set.py', + 'fan.py', + 'fan_isomorphism.py', + 'fan_morphism.py', + 'hasse_diagram.py', + 'integral_points.py', + 'lattice_polytope.py', + 'linear_expression.py', + 'newton_polygon.py', + 'polyhedral_complex.py', + 'pseudolines.py', + 'relative_interior.py', + 'ribbon_graph.py', + 'toric_lattice.py', + 'toric_plotter.py', + 'voronoi_diagram.py', + subdir : 'sage/geometry' ) extension_data = { diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build index fcf98755cb1..700d92bf09e 100644 --- a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build @@ -1,7 +1,4 @@ -py.install_sources( - 'all.py', - subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', -) +py.install_sources('all.py', subdir : 'sage/geometry/polyhedron/combinatorial_polyhedron') extension_data = { 'base': files('base.pyx'), diff --git a/src/sage/geometry/polyhedron/meson.build b/src/sage/geometry/polyhedron/meson.build index 3234e6b0167..e0715d1ae83 100644 --- a/src/sage/geometry/polyhedron/meson.build +++ b/src/sage/geometry/polyhedron/meson.build @@ -1,42 +1,42 @@ py.install_sources( - 'all.py', - 'backend_cdd.py', - 'backend_cdd_rdf.py', - 'backend_field.py', - 'backend_normaliz.py', - 'backend_number_field.py', - 'backend_polymake.py', - 'backend_ppl.py', - 'base.py', - 'base0.py', - 'base1.py', - 'base2.py', - 'base3.py', - 'base4.py', - 'base5.py', - 'base6.py', - 'base7.py', - 'base_QQ.py', - 'base_RDF.py', - 'base_ZZ.py', - 'base_mutable.py', - 'base_number_field.py', - 'cdd_file_format.py', - 'constructor.py', - 'double_description.py', - 'double_description_inhomogeneous.py', - 'face.py', - 'generating_function.py', - 'lattice_euclidean_group_element.py', - 'library.py', - 'misc.py', - 'palp_database.py', - 'parent.py', - 'plot.py', - 'ppl_lattice_polygon.py', - 'ppl_lattice_polytope.py', - 'representation.py', - subdir: 'sage/geometry/polyhedron', + 'all.py', + 'backend_cdd.py', + 'backend_cdd_rdf.py', + 'backend_field.py', + 'backend_normaliz.py', + 'backend_number_field.py', + 'backend_polymake.py', + 'backend_ppl.py', + 'base.py', + 'base0.py', + 'base1.py', + 'base2.py', + 'base3.py', + 'base4.py', + 'base5.py', + 'base6.py', + 'base7.py', + 'base_QQ.py', + 'base_RDF.py', + 'base_ZZ.py', + 'base_mutable.py', + 'base_number_field.py', + 'cdd_file_format.py', + 'constructor.py', + 'double_description.py', + 'double_description_inhomogeneous.py', + 'face.py', + 'generating_function.py', + 'lattice_euclidean_group_element.py', + 'library.py', + 'misc.py', + 'palp_database.py', + 'parent.py', + 'plot.py', + 'ppl_lattice_polygon.py', + 'ppl_lattice_polytope.py', + 'representation.py', + subdir : 'sage/geometry/polyhedron' ) subdir('combinatorial_polyhedron') diff --git a/src/sage/geometry/triangulation/meson.build b/src/sage/geometry/triangulation/meson.build index 575756c1c61..3f46a95464f 100644 --- a/src/sage/geometry/triangulation/meson.build +++ b/src/sage/geometry/triangulation/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - 'all.py', - 'element.py', - 'point_configuration.py', - subdir: 'sage/geometry/triangulation', -) +py.install_sources('all.py', 'element.py', 'point_configuration.py', subdir : 'sage/geometry/triangulation') extension_data_cpp = { 'base': files('base.pyx', 'functions.cc', 'data.cc', 'triangulations.cc'), diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index 43b5b530fbd..ef431a0f7b6 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -1,15 +1,15 @@ py.install_sources( - 'all.py', - 'boost_graph.pxd', - 'c_graph.pxd', - 'dense_graph.pxd', - 'graph_backends.pxd', - 'overview.py', - 'sparse_graph.pxd', - 'static_dense_graph.pxd', - 'static_sparse_backend.pxd', - 'static_sparse_graph.pxd', - subdir: 'sage/graphs/base', + 'all.py', + 'boost_graph.pxd', + 'c_graph.pxd', + 'dense_graph.pxd', + 'graph_backends.pxd', + 'overview.py', + 'sparse_graph.pxd', + 'static_dense_graph.pxd', + 'static_sparse_backend.pxd', + 'static_sparse_graph.pxd', + subdir : 'sage/graphs/base' ) extension_data = { diff --git a/src/sage/graphs/generators/meson.build b/src/sage/graphs/generators/meson.build index 43667d84f80..be0879c9063 100644 --- a/src/sage/graphs/generators/meson.build +++ b/src/sage/graphs/generators/meson.build @@ -1,16 +1,16 @@ py.install_sources( - 'all.py', - 'basic.py', - 'chessboard.py', - 'classical_geometries.py', - 'degree_sequence.py', - 'families.py', - 'intersection.py', - 'platonic_solids.py', - 'random.py', - 'smallgraphs.py', - 'world_map.py', - subdir: 'sage/graphs/generators', + 'all.py', + 'basic.py', + 'chessboard.py', + 'classical_geometries.py', + 'degree_sequence.py', + 'families.py', + 'intersection.py', + 'platonic_solids.py', + 'random.py', + 'smallgraphs.py', + 'world_map.py', + subdir : 'sage/graphs/generators' ) extension_data = { diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 569049303ad..19b2786578e 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -7,14 +7,14 @@ rw = declare_dependency( ) py.install_sources( - 'all.py', - 'all__sagemath_tdlib.py', - 'fast_digraph.pxd', - 'modular_decomposition.py', - 'rankwidth.pxd', - 'tree_decomposition.pxd', - 'vertex_separation.pxd', - subdir: 'sage/graphs/graph_decompositions', + 'all.py', + 'all__sagemath_tdlib.py', + 'fast_digraph.pxd', + 'modular_decomposition.py', + 'rankwidth.pxd', + 'tree_decomposition.pxd', + 'vertex_separation.pxd', + subdir : 'sage/graphs/graph_decompositions' ) extension_data = { diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index a564f8f3d09..a992796e777 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -9,44 +9,44 @@ planarity = declare_dependency( ] ) py.install_sources( - 'all.py', - 'all__sagemath_bliss.py', - 'all__sagemath_mcqd.py', - 'all__sagemath_tdlib.py', - 'bipartite_graph.py', - 'cliquer.pxd', - 'connectivity.pxd', - 'convexity_properties.pxd', - 'digraph.py', - 'digraph_generators.py', - 'distances_all_pairs.pxd', - 'domination.py', - 'dot2tex_utils.py', - 'generic_graph.py', - 'generic_graph_pyx.pxd', - 'graph.py', - 'graph_database.py', - 'graph_editor.py', - 'graph_generators.py', - 'graph_input.py', - 'graph_latex.py', - 'graph_list.py', - 'graph_plot.py', - 'graph_plot_js.py', - 'hypergraph_generators.py', - 'independent_sets.pxd', - 'isgci.py', - 'lovasz_theta.py', - 'mcqd.pxd', - 'orientations.py', - 'partial_cube.py', - 'pq_trees.py', - 'print_graphs.py', - 'schnyder.py', - 'traversals.pxd', - 'trees.pxd', - 'tutte_polynomial.py', - subdir: 'sage/graphs', + 'all.py', + 'all__sagemath_bliss.py', + 'all__sagemath_mcqd.py', + 'all__sagemath_tdlib.py', + 'bipartite_graph.py', + 'cliquer.pxd', + 'connectivity.pxd', + 'convexity_properties.pxd', + 'digraph.py', + 'digraph_generators.py', + 'distances_all_pairs.pxd', + 'domination.py', + 'dot2tex_utils.py', + 'generic_graph.py', + 'generic_graph_pyx.pxd', + 'graph.py', + 'graph_database.py', + 'graph_editor.py', + 'graph_generators.py', + 'graph_input.py', + 'graph_latex.py', + 'graph_list.py', + 'graph_plot.py', + 'graph_plot_js.py', + 'hypergraph_generators.py', + 'independent_sets.pxd', + 'isgci.py', + 'lovasz_theta.py', + 'mcqd.pxd', + 'orientations.py', + 'partial_cube.py', + 'pq_trees.py', + 'print_graphs.py', + 'schnyder.py', + 'traversals.pxd', + 'trees.pxd', + 'tutte_polynomial.py', + subdir : 'sage/graphs' ) extension_data = { diff --git a/src/sage/groups/matrix_gps/meson.build b/src/sage/groups/matrix_gps/meson.build index 51348e1110b..de499c053da 100644 --- a/src/sage/groups/matrix_gps/meson.build +++ b/src/sage/groups/matrix_gps/meson.build @@ -1,28 +1,28 @@ py.install_sources( - 'all.py', - 'binary_dihedral.py', - 'catalog.py', - 'coxeter_group.py', - 'finitely_generated.py', - 'finitely_generated_gap.py', - 'heisenberg.py', - 'homset.py', - 'isometries.py', - 'linear.py', - 'linear_gap.py', - 'matrix_group.py', - 'matrix_group_gap.py', - 'morphism.py', - 'named_group.py', - 'named_group_gap.py', - 'orthogonal.py', - 'orthogonal_gap.py', - 'pickling_overrides.py', - 'symplectic.py', - 'symplectic_gap.py', - 'unitary.py', - 'unitary_gap.py', - subdir: 'sage/groups/matrix_gps', + 'all.py', + 'binary_dihedral.py', + 'catalog.py', + 'coxeter_group.py', + 'finitely_generated.py', + 'finitely_generated_gap.py', + 'heisenberg.py', + 'homset.py', + 'isometries.py', + 'linear.py', + 'linear_gap.py', + 'matrix_group.py', + 'matrix_group_gap.py', + 'morphism.py', + 'named_group.py', + 'named_group_gap.py', + 'orthogonal.py', + 'orthogonal_gap.py', + 'pickling_overrides.py', + 'symplectic.py', + 'symplectic_gap.py', + 'unitary.py', + 'unitary_gap.py', + subdir : 'sage/groups/matrix_gps' ) extension_data = { diff --git a/src/sage/groups/meson.build b/src/sage/groups/meson.build index 495e4c48415..f49474c2860 100644 --- a/src/sage/groups/meson.build +++ b/src/sage/groups/meson.build @@ -1,33 +1,33 @@ py.install_sources( - 'all.py', - 'artin.py', - 'braid.py', - 'cactus_group.py', - 'class_function.py', - 'conjugacy_classes.py', - 'cubic_braid.py', - 'finitely_presented.py', - 'finitely_presented_catalog.py', - 'finitely_presented_named.py', - 'fqf_orthogonal.py', - 'free_group.py', - 'galois_group.py', - 'galois_group_perm.py', - 'generic.py', - 'group.pxd', - 'group_exp.py', - 'group_semidirect_product.py', - 'groups_catalog.py', - 'indexed_free_group.py', - 'kernel_subgroup.py', - 'libgap_group.py', - 'libgap_mixin.py', - 'libgap_morphism.py', - 'libgap_wrapper.pxd', - 'old.pxd', - 'pari_group.py', - 'raag.py', - subdir: 'sage/groups', + 'all.py', + 'artin.py', + 'braid.py', + 'cactus_group.py', + 'class_function.py', + 'conjugacy_classes.py', + 'cubic_braid.py', + 'finitely_presented.py', + 'finitely_presented_catalog.py', + 'finitely_presented_named.py', + 'fqf_orthogonal.py', + 'free_group.py', + 'galois_group.py', + 'galois_group_perm.py', + 'generic.py', + 'group.pxd', + 'group_exp.py', + 'group_semidirect_product.py', + 'groups_catalog.py', + 'indexed_free_group.py', + 'kernel_subgroup.py', + 'libgap_group.py', + 'libgap_mixin.py', + 'libgap_morphism.py', + 'libgap_wrapper.pxd', + 'old.pxd', + 'pari_group.py', + 'raag.py', + subdir : 'sage/groups' ) extension_data = { diff --git a/src/sage/groups/perm_gps/meson.build b/src/sage/groups/perm_gps/meson.build index e964b9ff4dd..eee96dacab0 100644 --- a/src/sage/groups/perm_gps/meson.build +++ b/src/sage/groups/perm_gps/meson.build @@ -1,13 +1,13 @@ py.install_sources( - 'all.py', - 'constructor.py', - 'cubegroup.py', - 'permgroup.py', - 'permgroup_morphism.py', - 'permgroup_named.py', - 'permutation_groups_catalog.py', - 'symgp_conjugacy_class.py', - subdir: 'sage/groups/perm_gps', + 'all.py', + 'constructor.py', + 'cubegroup.py', + 'permgroup.py', + 'permgroup_morphism.py', + 'permgroup_named.py', + 'permutation_groups_catalog.py', + 'symgp_conjugacy_class.py', + subdir : 'sage/groups/perm_gps' ) extension_data = { diff --git a/src/sage/groups/perm_gps/partn_ref/meson.build b/src/sage/groups/perm_gps/partn_ref/meson.build index 3e741020944..347d4b11cb3 100644 --- a/src/sage/groups/perm_gps/partn_ref/meson.build +++ b/src/sage/groups/perm_gps/partn_ref/meson.build @@ -1,7 +1,4 @@ -py.install_sources( - 'all.py', - subdir: 'sage/groups/perm_gps/partn_ref', -) +py.install_sources('all.py', subdir : 'sage/groups/perm_gps/partn_ref') extension_data = { 'automorphism_group_canonical_label': files('automorphism_group_canonical_label.pyx'), diff --git a/src/sage/groups/perm_gps/partn_ref2/meson.build b/src/sage/groups/perm_gps/partn_ref2/meson.build index 76838c53d74..d25038bb14d 100644 --- a/src/sage/groups/perm_gps/partn_ref2/meson.build +++ b/src/sage/groups/perm_gps/partn_ref2/meson.build @@ -1,7 +1,4 @@ -py.install_sources( - 'all.py', - subdir: 'sage/groups/perm_gps/partn_ref2', -) +py.install_sources('all.py', subdir : 'sage/groups/perm_gps/partn_ref2') extension_data = { 'refinement_generic': files('refinement_generic.pyx'), diff --git a/src/sage/groups/semimonomial_transformations/meson.build b/src/sage/groups/semimonomial_transformations/meson.build index c05e3e2d2b5..00b94c7bc38 100644 --- a/src/sage/groups/semimonomial_transformations/meson.build +++ b/src/sage/groups/semimonomial_transformations/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'semimonomial_transformation_group.py', - subdir: 'sage/groups/semimonomial_transformations', -) +py.install_sources('all.py', 'semimonomial_transformation_group.py', subdir : 'sage/groups/semimonomial_transformations') extension_data = { 'semimonomial_transformation': files('semimonomial_transformation.pyx'), diff --git a/src/sage/interacts/meson.build b/src/sage/interacts/meson.build index aa72c33da62..56c1eeb0622 100644 --- a/src/sage/interacts/meson.build +++ b/src/sage/interacts/meson.build @@ -1,12 +1,12 @@ py.install_sources( - 'algebra.py', - 'all.py', - 'calculus.py', - 'fractals.py', - 'geometry.py', - 'library.py', - 'statistics.py', - subdir: 'sage/interacts', + 'algebra.py', + 'all.py', + 'calculus.py', + 'fractals.py', + 'geometry.py', + 'library.py', + 'statistics.py', + subdir : 'sage/interacts' ) extension_data = { diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build index 4c2bd0fe578..f7086657ce6 100644 --- a/src/sage/interfaces/meson.build +++ b/src/sage/interfaces/meson.build @@ -1,64 +1,64 @@ py.install_sources( - 'abc.py', - 'all.py', - 'all__sagemath_polyhedra.py', - 'axiom.py', - 'chomp.py', - 'cleaner.py', - 'ecm.py', - 'expect.py', - 'four_ti_2.py', - 'fricas.py', - 'frobby.py', - 'gap.py', - 'gap3.py', - 'gap_workspace.py', - 'genus2reduction.py', - 'gfan.py', - 'giac.py', - 'gnuplot.py', - 'gp.py', - 'interface.py', - 'jmoldata.py', - 'kash.py', - 'kenzo.py', - 'latte.py', - 'lie.py', - 'lisp.py', - 'macaulay2.py', - 'magma.py', - 'magma_free.py', - 'maple.py', - 'mathematica.py', - 'mathics.py', - 'matlab.py', - 'maxima.py', - 'maxima_abstract.py', - 'maxima_lib.py', - 'mupad.py', - 'mwrank.py', - 'octave.py', - 'phc.py', - 'polymake.py', - 'povray.py', - 'psage.py', - 'qepcad.py', - 'qsieve.py', - 'quit.py', - 'r.py', - 'read_data.py', - 'rubik.py', - 'sage0.py', - 'sage-maxima.lisp', - 'scilab.py', - 'singular.py', - 'sympy.py', - 'sympy_wrapper.py', - 'tab_completion.py', - 'tachyon.py', - 'tests.py', - 'tides.py', - subdir: 'sage/interfaces', + 'abc.py', + 'all.py', + 'all__sagemath_polyhedra.py', + 'axiom.py', + 'chomp.py', + 'cleaner.py', + 'ecm.py', + 'expect.py', + 'four_ti_2.py', + 'fricas.py', + 'frobby.py', + 'gap.py', + 'gap3.py', + 'gap_workspace.py', + 'genus2reduction.py', + 'gfan.py', + 'giac.py', + 'gnuplot.py', + 'gp.py', + 'interface.py', + 'jmoldata.py', + 'kash.py', + 'kenzo.py', + 'latte.py', + 'lie.py', + 'lisp.py', + 'macaulay2.py', + 'magma.py', + 'magma_free.py', + 'maple.py', + 'mathematica.py', + 'mathics.py', + 'matlab.py', + 'maxima.py', + 'maxima_abstract.py', + 'maxima_lib.py', + 'mupad.py', + 'mwrank.py', + 'octave.py', + 'phc.py', + 'polymake.py', + 'povray.py', + 'psage.py', + 'qepcad.py', + 'qsieve.py', + 'quit.py', + 'r.py', + 'read_data.py', + 'rubik.py', + 'sage-maxima.lisp', + 'sage0.py', + 'scilab.py', + 'singular.py', + 'sympy.py', + 'sympy_wrapper.py', + 'tab_completion.py', + 'tachyon.py', + 'tests.py', + 'tides.py', + subdir : 'sage/interfaces' ) extension_data = { diff --git a/src/sage/lfunctions/meson.build b/src/sage/lfunctions/meson.build index 50d701cba55..024507e1043 100644 --- a/src/sage/lfunctions/meson.build +++ b/src/sage/lfunctions/meson.build @@ -1,10 +1,10 @@ py.install_sources( - 'all.py', - 'dokchitser.py', - 'lcalc.py', - 'pari.py', - 'sympow.py', - subdir: 'sage/lfunctions', + 'all.py', + 'dokchitser.py', + 'lcalc.py', + 'pari.py', + 'sympow.py', + subdir : 'sage/lfunctions' ) extension_data = { diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index cd5ec778dd1..d8f90891b1d 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -1,21 +1,21 @@ py.install_sources( - '__init__.py', - 'acb.pxd', - 'acb_calc.pxd', - 'acb_elliptic.pxd', - 'acb_hypgeom.pxd', - 'acb_mat.pxd', - 'acb_modular.pxd', - 'acb_poly.pxd', - 'arb.pxd', - 'arb_fmpz_poly.pxd', - 'arb_hypgeom.pxd', - 'arb_wrap.h', - 'arf.pxd', - 'bernoulli.pxd', - 'mag.pxd', - 'types.pxd', - subdir: 'sage/libs/arb', + '__init__.py', + 'acb.pxd', + 'acb_calc.pxd', + 'acb_elliptic.pxd', + 'acb_hypgeom.pxd', + 'acb_mat.pxd', + 'acb_modular.pxd', + 'acb_poly.pxd', + 'arb.pxd', + 'arb_fmpz_poly.pxd', + 'arb_hypgeom.pxd', + 'arb_wrap.h', + 'arf.pxd', + 'bernoulli.pxd', + 'mag.pxd', + 'types.pxd', + subdir : 'sage/libs/arb' ) extension_data = { diff --git a/src/sage/libs/coxeter3/meson.build b/src/sage/libs/coxeter3/meson.build index ea75996ddb7..1c5505c9aa0 100644 --- a/src/sage/libs/coxeter3/meson.build +++ b/src/sage/libs/coxeter3/meson.build @@ -1,11 +1,11 @@ coxeter3 = cc.find_library('coxeter3', required: false) py.install_sources( - '__init__.py', - 'all__sagemath_coxeter3.py', - 'coxeter.pxd', - 'coxeter_group.py', - 'decl.pxd', - subdir: 'sage/libs/coxeter3', + '__init__.py', + 'all__sagemath_coxeter3.py', + 'coxeter.pxd', + 'coxeter_group.py', + 'decl.pxd', + subdir : 'sage/libs/coxeter3' ) diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index 4cdca5b7c42..e7d224188cb 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -1,12 +1,12 @@ py.install_sources( - '__init__.py', - 'all.py', - 'constructor.py', - 'homspace.pxd', - 'interface.py', - 'mat.pxd', - 'newforms.pxd', - subdir: 'sage/libs/eclib', + '__init__.py', + 'all.py', + 'constructor.py', + 'homspace.pxd', + 'interface.py', + 'mat.pxd', + 'newforms.pxd', + subdir : 'sage/libs/eclib' ) extension_data_cpp = { diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index 88d8a479603..63efeb48959 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -1,34 +1,34 @@ py.install_sources( - '__init__.py', - 'arith.pxd', - 'flint.pxd', - 'flint_ntl_wrap.h', - 'flint_wrap.h', - 'fmpq.pxd', - 'fmpq_mat.pxd', - 'fmpq_poly.pxd', - 'fmpz.pxd', - 'fmpz_factor.pxd', - 'fmpz_mat.pxd', - 'fmpz_mod.pxd', - 'fmpz_mod_poly.pxd', - 'fmpz_poly.pxd', - 'fmpz_poly_mat.pxd', - 'fmpz_poly_q.pxd', - 'fmpz_vec.pxd', - 'fq.pxd', - 'fq_nmod.pxd', - 'nmod_poly.pxd', - 'nmod_vec.pxd', - 'ntl_interface.pxd', - 'padic.pxd', - 'padic_poly.pxd', - 'qadic.pxd', - 'qsieve.pxd', - 'thread_pool.pxd', - 'types.pxd', - 'ulong_extras.pxd', - subdir: 'sage/libs/flint', + '__init__.py', + 'arith.pxd', + 'flint.pxd', + 'flint_ntl_wrap.h', + 'flint_wrap.h', + 'fmpq.pxd', + 'fmpq_mat.pxd', + 'fmpq_poly.pxd', + 'fmpz.pxd', + 'fmpz_factor.pxd', + 'fmpz_mat.pxd', + 'fmpz_mod.pxd', + 'fmpz_mod_poly.pxd', + 'fmpz_poly.pxd', + 'fmpz_poly_mat.pxd', + 'fmpz_poly_q.pxd', + 'fmpz_vec.pxd', + 'fq.pxd', + 'fq_nmod.pxd', + 'nmod_poly.pxd', + 'nmod_vec.pxd', + 'ntl_interface.pxd', + 'padic.pxd', + 'padic_poly.pxd', + 'qadic.pxd', + 'qsieve.pxd', + 'thread_pool.pxd', + 'types.pxd', + 'ulong_extras.pxd', + subdir : 'sage/libs/flint' ) extension_data = { diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index 6256bb82f19..df6ccfee84b 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -1,19 +1,19 @@ py.install_sources( - 'all.py', - 'all_documented_functions.py', - 'assigned_names.py', - 'context_managers.py', - 'element.pxd', - 'gap_functions.py', - 'gap_globals.py', - 'gap_includes.pxd', - 'operations.py', - 'sage.gaprc', - 'saved_workspace.py', - 'test.py', - 'test_long.py', - 'util.pxd', - subdir: 'sage/libs/gap', + 'all.py', + 'all_documented_functions.py', + 'assigned_names.py', + 'context_managers.py', + 'element.pxd', + 'gap_functions.py', + 'gap_globals.py', + 'gap_includes.pxd', + 'operations.py', + 'sage.gaprc', + 'saved_workspace.py', + 'test.py', + 'test_long.py', + 'util.pxd', + subdir : 'sage/libs/gap' ) extension_data = { diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index f4003c4a9c7..6e0638ededf 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -4,12 +4,7 @@ giac = declare_dependency( ] ) -py.install_sources( - '__init__.py', - 'giac.pxd', - 'misc.h', - subdir: 'sage/libs/giac', -) +py.install_sources('__init__.py', 'giac.pxd', 'misc.h', subdir : 'sage/libs/giac') extension_data_cpp = { 'giac': files('giac.pyx'), diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build index 080e12bd275..32eaa0bb9a4 100644 --- a/src/sage/libs/glpk/meson.build +++ b/src/sage/libs/glpk/meson.build @@ -1,11 +1,11 @@ py.install_sources( - '__init__.py', - 'constants.pxd', - 'env.pxd', - 'graph.pxd', - 'lp.pxd', - 'types.pxd', - subdir: 'sage/libs/glpk', + '__init__.py', + 'constants.pxd', + 'env.pxd', + 'graph.pxd', + 'lp.pxd', + 'types.pxd', + subdir : 'sage/libs/glpk' ) extension_data = { diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 7eaa2b4f586..7cb927e811a 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -1,17 +1,17 @@ py.install_sources( - '__init__.py', - 'all.pxd', - 'binop.pxd', - 'misc.pxd', - 'mpf.pxd', - 'mpn.pxd', - 'mpq.pxd', - 'mpz.pxd', - 'pylong.pxd', - 'random.pxd', - 'randomize.pxd', - 'types.pxd', - subdir: 'sage/libs/gmp', + '__init__.py', + 'all.pxd', + 'binop.pxd', + 'misc.pxd', + 'mpf.pxd', + 'mpn.pxd', + 'mpq.pxd', + 'mpz.pxd', + 'pylong.pxd', + 'random.pxd', + 'randomize.pxd', + 'types.pxd', + subdir : 'sage/libs/gmp' ) extension_data = { diff --git a/src/sage/libs/gsl/meson.build b/src/sage/libs/gsl/meson.build index 39d674466f3..42f05e23a6a 100644 --- a/src/sage/libs/gsl/meson.build +++ b/src/sage/libs/gsl/meson.build @@ -1,70 +1,70 @@ py.install_sources( - '__init__.py', - 'airy.pxd', - 'all.pxd', - 'array.pxd', - 'bessel.pxd', - 'blas.pxd', - 'blas_types.pxd', - 'block.pxd', - 'chebyshev.pxd', - 'clausen.pxd', - 'combination.pxd', - 'complex.pxd', - 'coulomb.pxd', - 'coupling.pxd', - 'dawson.pxd', - 'debye.pxd', - 'dilog.pxd', - 'eigen.pxd', - 'elementary.pxd', - 'ellint.pxd', - 'elljac.pxd', - 'erf.pxd', - 'errno.pxd', - 'exp.pxd', - 'expint.pxd', - 'fermi_dirac.pxd', - 'fft.pxd', - 'fit.pxd', - 'gamma.pxd', - 'gegenbauer.pxd', - 'histogram.pxd', - 'hyperg.pxd', - 'integration.pxd', - 'interp.pxd', - 'laguerre.pxd', - 'lambert.pxd', - 'legendre.pxd', - 'linalg.pxd', - 'log.pxd', - 'math.pxd', - 'matrix.pxd', - 'matrix_complex.pxd', - 'min.pxd', - 'monte.pxd', - 'ntuple.pxd', - 'odeiv.pxd', - 'permutation.pxd', - 'poly.pxd', - 'pow_int.pxd', - 'psi.pxd', - 'qrng.pxd', - 'random.pxd', - 'rng.pxd', - 'roots.pxd', - 'sort.pxd', - 'statistics.pxd', - 'sum.pxd', - 'synchrotron.pxd', - 'transport.pxd', - 'trig.pxd', - 'types.pxd', - 'vector.pxd', - 'vector_complex.pxd', - 'wavelet.pxd', - 'zeta.pxd', - subdir: 'sage/libs/gsl', + '__init__.py', + 'airy.pxd', + 'all.pxd', + 'array.pxd', + 'bessel.pxd', + 'blas.pxd', + 'blas_types.pxd', + 'block.pxd', + 'chebyshev.pxd', + 'clausen.pxd', + 'combination.pxd', + 'complex.pxd', + 'coulomb.pxd', + 'coupling.pxd', + 'dawson.pxd', + 'debye.pxd', + 'dilog.pxd', + 'eigen.pxd', + 'elementary.pxd', + 'ellint.pxd', + 'elljac.pxd', + 'erf.pxd', + 'errno.pxd', + 'exp.pxd', + 'expint.pxd', + 'fermi_dirac.pxd', + 'fft.pxd', + 'fit.pxd', + 'gamma.pxd', + 'gegenbauer.pxd', + 'histogram.pxd', + 'hyperg.pxd', + 'integration.pxd', + 'interp.pxd', + 'laguerre.pxd', + 'lambert.pxd', + 'legendre.pxd', + 'linalg.pxd', + 'log.pxd', + 'math.pxd', + 'matrix.pxd', + 'matrix_complex.pxd', + 'min.pxd', + 'monte.pxd', + 'ntuple.pxd', + 'odeiv.pxd', + 'permutation.pxd', + 'poly.pxd', + 'pow_int.pxd', + 'psi.pxd', + 'qrng.pxd', + 'random.pxd', + 'rng.pxd', + 'roots.pxd', + 'sort.pxd', + 'statistics.pxd', + 'sum.pxd', + 'synchrotron.pxd', + 'transport.pxd', + 'trig.pxd', + 'types.pxd', + 'vector.pxd', + 'vector_complex.pxd', + 'wavelet.pxd', + 'zeta.pxd', + subdir : 'sage/libs/gsl' ) extension_data = { diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build index e70ed610108..ee7287fe08e 100644 --- a/src/sage/libs/lcalc/meson.build +++ b/src/sage/libs/lcalc/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - '__init__.py', - 'lcalc_Lfunction.pxd', - 'lcalc_sage.h', - subdir: 'sage/libs/lcalc', -) +py.install_sources('__init__.py', 'lcalc_Lfunction.pxd', 'lcalc_sage.h', subdir : 'sage/libs/lcalc') extension_data_cpp = { 'lcalc_Lfunction': files('lcalc_Lfunction.pyx'), diff --git a/src/sage/libs/linbox/meson.build b/src/sage/libs/linbox/meson.build index 48b092ed5d8..9f26f94d40e 100644 --- a/src/sage/libs/linbox/meson.build +++ b/src/sage/libs/linbox/meson.build @@ -1,11 +1,11 @@ py.install_sources( - '__init__.py', - 'conversion.pxd', - 'fflas.pxd', - 'givaro.pxd', - 'linbox.pxd', - 'linbox_flint_interface.pxd', - subdir: 'sage/libs/linbox', + '__init__.py', + 'conversion.pxd', + 'fflas.pxd', + 'givaro.pxd', + 'linbox.pxd', + 'linbox_flint_interface.pxd', + subdir : 'sage/libs/linbox' ) extension_data_cpp = { diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index a19f4b023fa..924f8fa4f11 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -7,19 +7,19 @@ sirocco = declare_dependency( ecl = cc.find_library('ecl') py.install_sources( - 'all.py', - 'all__sagemath_coxeter3.py', - 'all__sagemath_meataxe.py', - 'all__sagemath_objects.py', - 'all__sagemath_sirocco.py', - 'ecl.pxd', - 'eclsig.h', - 'gmpxx.pxd', - 'iml.pxd', - 'm4ri.pxd', - 'm4rie.pxd', - 'meataxe.pxd', - subdir: 'sage/libs', + 'all.py', + 'all__sagemath_coxeter3.py', + 'all__sagemath_meataxe.py', + 'all__sagemath_objects.py', + 'all__sagemath_sirocco.py', + 'ecl.pxd', + 'eclsig.h', + 'gmpxx.pxd', + 'iml.pxd', + 'm4ri.pxd', + 'm4rie.pxd', + 'meataxe.pxd', + subdir : 'sage/libs' ) extension_data = { diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build index 7bd5c737668..394a4da4357 100644 --- a/src/sage/libs/mpmath/meson.build +++ b/src/sage/libs/mpmath/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - '__init__.py', - 'all.py', - 'utils.pxd', - subdir: 'sage/libs/mpmath', -) +py.install_sources('__init__.py', 'all.py', 'utils.pxd', subdir : 'sage/libs/mpmath') extension_data = { 'ext_impl': files('ext_impl.pyx'), diff --git a/src/sage/libs/ntl/meson.build b/src/sage/libs/ntl/meson.build index cf4b30ad55a..cd75a03cd19 100644 --- a/src/sage/libs/ntl/meson.build +++ b/src/sage/libs/ntl/meson.build @@ -1,49 +1,49 @@ py.install_sources( - 'GF2.pxd', - 'GF2E.pxd', - 'GF2EX.pxd', - 'GF2X.pxd', - 'ZZ.pxd', - 'ZZX.pxd', - 'ZZ_p.pxd', - 'ZZ_pE.pxd', - 'ZZ_pEX.pxd', - 'ZZ_pX.pxd', - '__init__.py', - 'all.py', - 'conversion.pxd', - 'convert.pxd', - 'lzz_p.pxd', - 'lzz_pX.pxd', - 'mat_GF2.pxd', - 'mat_GF2E.pxd', - 'mat_ZZ.pxd', - 'ntl_GF2.pxd', - 'ntl_GF2E.pxd', - 'ntl_GF2EContext.pxd', - 'ntl_GF2EX.pxd', - 'ntl_GF2X.pxd', - 'ntl_ZZ.pxd', - 'ntl_ZZX.pxd', - 'ntl_ZZ_p.pxd', - 'ntl_ZZ_pContext.pxd', - 'ntl_ZZ_pE.pxd', - 'ntl_ZZ_pEContext.pxd', - 'ntl_ZZ_pEX.pxd', - 'ntl_ZZ_pX.pxd', - 'ntl_lzz_p.pxd', - 'ntl_lzz_pContext.pxd', - 'ntl_lzz_pX.pxd', - 'ntl_mat_GF2.pxd', - 'ntl_mat_GF2E.pxd', - 'ntl_mat_ZZ.pxd', - 'ntl_tools.pxd', - 'ntlwrap.h', - 'ntlwrap_impl.h', - 'types.pxd', - 'vec_GF2.pxd', - 'vec_GF2E.pxd', - subdir: 'sage/libs/ntl', + 'GF2.pxd', + 'GF2E.pxd', + 'GF2EX.pxd', + 'GF2X.pxd', + 'ZZ.pxd', + 'ZZX.pxd', + 'ZZ_p.pxd', + 'ZZ_pE.pxd', + 'ZZ_pEX.pxd', + 'ZZ_pX.pxd', + '__init__.py', + 'all.py', + 'conversion.pxd', + 'convert.pxd', + 'lzz_p.pxd', + 'lzz_pX.pxd', + 'mat_GF2.pxd', + 'mat_GF2E.pxd', + 'mat_ZZ.pxd', + 'ntl_GF2.pxd', + 'ntl_GF2E.pxd', + 'ntl_GF2EContext.pxd', + 'ntl_GF2EX.pxd', + 'ntl_GF2X.pxd', + 'ntl_ZZ.pxd', + 'ntl_ZZX.pxd', + 'ntl_ZZ_p.pxd', + 'ntl_ZZ_pContext.pxd', + 'ntl_ZZ_pE.pxd', + 'ntl_ZZ_pEContext.pxd', + 'ntl_ZZ_pEX.pxd', + 'ntl_ZZ_pX.pxd', + 'ntl_lzz_p.pxd', + 'ntl_lzz_pContext.pxd', + 'ntl_lzz_pX.pxd', + 'ntl_mat_GF2.pxd', + 'ntl_mat_GF2E.pxd', + 'ntl_mat_ZZ.pxd', + 'ntl_tools.pxd', + 'ntlwrap.h', + 'ntlwrap_impl.h', + 'types.pxd', + 'vec_GF2.pxd', + 'vec_GF2E.pxd', + subdir : 'sage/libs/ntl' ) extension_data_cpp = { diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index da41b9a3507..8e3236af9bd 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -1,15 +1,15 @@ py.install_sources( - '__init__.py', - 'all.py', - 'convert_flint.pxd', - 'convert_gmp.pxd', - 'convert_sage.pxd', - 'convert_sage_complex_double.pxd', - 'convert_sage_real_double.pxd', - 'convert_sage_real_mpfr.pxd', - 'misc.pxd', - 'tests.py', - subdir: 'sage/libs/pari', + '__init__.py', + 'all.py', + 'convert_flint.pxd', + 'convert_gmp.pxd', + 'convert_sage.pxd', + 'convert_sage_complex_double.pxd', + 'convert_sage_real_double.pxd', + 'convert_sage_real_mpfr.pxd', + 'misc.pxd', + 'tests.py', + subdir : 'sage/libs/pari' ) extension_data = { diff --git a/src/sage/libs/singular/meson.build b/src/sage/libs/singular/meson.build index 1a7037adaa5..cb0d0709354 100644 --- a/src/sage/libs/singular/meson.build +++ b/src/sage/libs/singular/meson.build @@ -1,14 +1,14 @@ py.install_sources( - '__init__.py', - 'decl.pxd', - 'function.pxd', - 'function_factory.py', - 'groebner_strategy.pxd', - 'polynomial.pxd', - 'ring.pxd', - 'singular.pxd', - 'standard_options.py', - subdir: 'sage/libs/singular', + '__init__.py', + 'decl.pxd', + 'function.pxd', + 'function_factory.py', + 'groebner_strategy.pxd', + 'polynomial.pxd', + 'ring.pxd', + 'singular.pxd', + 'standard_options.py', + subdir : 'sage/libs/singular' ) extension_data_cpp = { diff --git a/src/sage/libs/symmetrica/meson.build b/src/sage/libs/symmetrica/meson.build index 8b2d10570ac..36fa3b99f30 100644 --- a/src/sage/libs/symmetrica/meson.build +++ b/src/sage/libs/symmetrica/meson.build @@ -5,11 +5,7 @@ symmetrica = declare_dependency( ] ) -py.install_sources( - '__init__.py', - 'all.py', - subdir: 'sage/libs/symmetrica', -) +py.install_sources('__init__.py', 'all.py', subdir : 'sage/libs/symmetrica') extension_data = { 'symmetrica': files('symmetrica.pyx'), diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 8b67f6b1bfc..a9255459faa 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -12,22 +12,22 @@ iml = declare_dependency( py.install_sources( - '__init__.py', - 'all.py', - 'all__sagemath_meataxe.py', - 'benchmark.py', - 'berlekamp_massey.py', - 'compute_J_ideal.py', - 'docs.py', - 'matrix_integer_dense_hnf.py', - 'matrix_integer_dense_saturation.py', - 'matrix_misc.py', - 'matrix_space.py', - 'operation_table.py', - 'special.py', - 'symplectic_basis.py', - 'tests.py', - subdir: 'sage/matrix', + '__init__.py', + 'all.py', + 'all__sagemath_meataxe.py', + 'benchmark.py', + 'berlekamp_massey.py', + 'compute_J_ideal.py', + 'docs.py', + 'matrix_integer_dense_hnf.py', + 'matrix_integer_dense_saturation.py', + 'matrix_misc.py', + 'matrix_space.py', + 'operation_table.py', + 'special.py', + 'symplectic_basis.py', + 'tests.py', + subdir : 'sage/matrix' ) extension_data = { diff --git a/src/sage/matroids/meson.build b/src/sage/matroids/meson.build index 917758578b5..b8e706a9414 100644 --- a/src/sage/matroids/meson.build +++ b/src/sage/matroids/meson.build @@ -1,19 +1,19 @@ py.install_sources( - 'advanced.py', - 'all.py', - 'catalog.py', - 'constructor.py', - 'database_collections.py', - 'database_matroids.py', - 'dual_matroid.py', - 'graphic_matroid.py', - 'matroids_catalog.py', - 'matroids_plot_helpers.py', - 'minor_matroid.py', - 'named_matroids.py', - 'rank_matroid.py', - 'utilities.py', - subdir: 'sage/matroids', + 'advanced.py', + 'all.py', + 'catalog.py', + 'constructor.py', + 'database_collections.py', + 'database_matroids.py', + 'dual_matroid.py', + 'graphic_matroid.py', + 'matroids_catalog.py', + 'matroids_plot_helpers.py', + 'minor_matroid.py', + 'named_matroids.py', + 'rank_matroid.py', + 'utilities.py', + subdir : 'sage/matroids' ) extension_data = { diff --git a/src/sage/meson.build b/src/sage/meson.build index 43fc0332b92..d505ccfecdf 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -73,22 +73,22 @@ foreach package : no_processing endforeach py.install_sources( - '__init__.py', - 'all.py', - 'all__sagemath_bliss.py', - 'all__sagemath_categories.py', - 'all__sagemath_coxeter3.py', - 'all__sagemath_environment.py', - 'all__sagemath_mcqd.py', - 'all__sagemath_meataxe.py', - 'all__sagemath_objects.py', - 'all__sagemath_repl.py', - 'all__sagemath_sirocco.py', - 'all__sagemath_tdlib.py', - 'all_cmdline.py', - 'env.py', - 'version.py', - subdir: 'sage', + '__init__.py', + 'all.py', + 'all__sagemath_bliss.py', + 'all__sagemath_categories.py', + 'all__sagemath_coxeter3.py', + 'all__sagemath_environment.py', + 'all__sagemath_mcqd.py', + 'all__sagemath_meataxe.py', + 'all__sagemath_objects.py', + 'all__sagemath_repl.py', + 'all__sagemath_sirocco.py', + 'all__sagemath_tdlib.py', + 'all_cmdline.py', + 'env.py', + 'version.py', + subdir : 'sage' ) subdir('cpython') diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index 27e76f59025..eccd8be3347 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -1,93 +1,93 @@ py.install_sources( - '__init__.py', - 'abstract_method.py', - 'all.py', - 'all__sagemath_environment.py', - 'all__sagemath_objects.py', - 'all__sagemath_repl.py', - 'allocator.pxd', - 'banner.py', - 'benchmark.py', - 'binary_tree.pxd', - 'bindable_class.py', - 'c3_controlled.pxd', - 'cachefunc.pxd', - 'call.py', - 'classcall_metaclass.pxd', - 'classgraph.py', - 'compat.py', - 'converting_dict.py', - 'copying.py', - 'cython.py', - 'decorators.py', - 'defaults.py', - 'dev_tools.py', - 'dist.py', - 'edit_module.py', - 'element_with_label.py', - 'explain_pickle.py', - 'fast_methods.pxd', - 'flatten.py', - 'func_persist.py', - 'function_mangling.pxd', - 'functional.py', - 'gperftools.py', - 'html.py', - 'inherit_comparison.pxd', - 'inline_fortran.py', - 'latex.py', - 'latex_macros.py', - 'latex_standalone.py', - 'lazy_format.py', - 'lazy_import_cache.py', - 'lazy_list.pxd', - 'lazy_string.pxd', - 'map_threaded.py', - 'mathml.py', - 'messaging.py', - 'method_decorator.py', - 'misc.py', - 'misc_c.pxd', - 'mrange.py', - 'multireplace.py', - 'namespace_package.py', - 'nested_class.pxd', - 'object_multiplexer.py', - 'package.py', - 'package_dir.py', - 'pager.py', - 'prandom.py', - 'profiler.py', - 'proof.py', - 'python.py', - 'random_testing.py', - 'randstate.pxd', - 'remote_file.py', - 'replace_dot_all.py', - 'repr.py', - 'rest_index_of_methods.py', - 'sage_eval.py', - 'sage_input.py', - 'sage_timeit.py', - 'sage_unittest.py', - 'sagedoc.py', - 'sagedoc_conf.py', - 'sageinspect.py', - 'search.pxd', - 'sh.py', - 'sphinxify.py', - 'superseded.py', - 'table.py', - 'temporary_file.py', - 'test_class_pickling.py', - 'test_nested_class.py', - 'timing.py', - 'trace.py', - 'unknown.py', - 'verbose.py', - 'viewer.py', - 'weak_dict.pxd', - subdir: 'sage/misc', + '__init__.py', + 'abstract_method.py', + 'all.py', + 'all__sagemath_environment.py', + 'all__sagemath_objects.py', + 'all__sagemath_repl.py', + 'allocator.pxd', + 'banner.py', + 'benchmark.py', + 'binary_tree.pxd', + 'bindable_class.py', + 'c3_controlled.pxd', + 'cachefunc.pxd', + 'call.py', + 'classcall_metaclass.pxd', + 'classgraph.py', + 'compat.py', + 'converting_dict.py', + 'copying.py', + 'cython.py', + 'decorators.py', + 'defaults.py', + 'dev_tools.py', + 'dist.py', + 'edit_module.py', + 'element_with_label.py', + 'explain_pickle.py', + 'fast_methods.pxd', + 'flatten.py', + 'func_persist.py', + 'function_mangling.pxd', + 'functional.py', + 'gperftools.py', + 'html.py', + 'inherit_comparison.pxd', + 'inline_fortran.py', + 'latex.py', + 'latex_macros.py', + 'latex_standalone.py', + 'lazy_format.py', + 'lazy_import_cache.py', + 'lazy_list.pxd', + 'lazy_string.pxd', + 'map_threaded.py', + 'mathml.py', + 'messaging.py', + 'method_decorator.py', + 'misc.py', + 'misc_c.pxd', + 'mrange.py', + 'multireplace.py', + 'namespace_package.py', + 'nested_class.pxd', + 'object_multiplexer.py', + 'package.py', + 'package_dir.py', + 'pager.py', + 'prandom.py', + 'profiler.py', + 'proof.py', + 'python.py', + 'random_testing.py', + 'randstate.pxd', + 'remote_file.py', + 'replace_dot_all.py', + 'repr.py', + 'rest_index_of_methods.py', + 'sage_eval.py', + 'sage_input.py', + 'sage_timeit.py', + 'sage_unittest.py', + 'sagedoc.py', + 'sagedoc_conf.py', + 'sageinspect.py', + 'search.pxd', + 'sh.py', + 'sphinxify.py', + 'superseded.py', + 'table.py', + 'temporary_file.py', + 'test_class_pickling.py', + 'test_nested_class.py', + 'timing.py', + 'trace.py', + 'unknown.py', + 'verbose.py', + 'viewer.py', + 'weak_dict.pxd', + subdir : 'sage/misc' ) extension_data = { diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index e642bf49b0d..da0d531e418 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -1,15 +1,15 @@ py.install_sources( - 'all.py', - 'arithgroup_generic.py', - 'arithgroup_perm.py', - 'congroup_gamma.py', - 'congroup_gamma0.py', - 'congroup_gamma1.py', - 'congroup_gammaH.py', - 'congroup_generic.py', - 'congroup_sl2z.py', - 'tests.py', - subdir: 'sage/modular/arithgroup', + 'all.py', + 'arithgroup_generic.py', + 'arithgroup_perm.py', + 'congroup_gamma.py', + 'congroup_gamma0.py', + 'congroup_gamma1.py', + 'congroup_gammaH.py', + 'congroup_generic.py', + 'congroup_sl2z.py', + 'tests.py', + subdir : 'sage/modular/arithgroup' ) extension_data = { diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build index fca36f6d674..fb4dce49d66 100644 --- a/src/sage/modular/meson.build +++ b/src/sage/modular/meson.build @@ -1,17 +1,17 @@ py.install_sources( - 'all.py', - 'buzzard.py', - 'congroup.py', - 'congroup_element.py', - 'cusps.py', - 'cusps_nf.py', - 'dims.py', - 'dirichlet.py', - 'etaproducts.py', - 'hypergeometric_motive.py', - 'multiple_zeta.py', - 'multiple_zeta_F_algebra.py', - subdir: 'sage/modular', + 'all.py', + 'buzzard.py', + 'congroup.py', + 'congroup_element.py', + 'cusps.py', + 'cusps_nf.py', + 'dims.py', + 'dirichlet.py', + 'etaproducts.py', + 'hypergeometric_motive.py', + 'multiple_zeta.py', + 'multiple_zeta_F_algebra.py', + subdir : 'sage/modular' ) extension_data = { diff --git a/src/sage/modular/modform/meson.build b/src/sage/modular/modform/meson.build index e80b0324357..d154837ba69 100644 --- a/src/sage/modular/modform/meson.build +++ b/src/sage/modular/modform/meson.build @@ -1,32 +1,32 @@ py.install_sources( - 'all.py', - 'ambient.py', - 'ambient_R.py', - 'ambient_eps.py', - 'ambient_g0.py', - 'ambient_g1.py', - 'constructor.py', - 'cuspidal_submodule.py', - 'defaults.py', - 'eis_series.py', - 'eisenstein_submodule.py', - 'element.py', - 'find_generators.py', - 'half_integral.py', - 'hecke_operator_on_qexp.py', - 'j_invariant.py', - 'l_series_gross_zagier.py', - 'notes.py', - 'numerical.py', - 'periods.py', - 'ring.py', - 'space.py', - 'submodule.py', - 'tests.py', - 'theta.py', - 'vm_basis.py', - 'weight1.py', - subdir: 'sage/modular/modform', + 'all.py', + 'ambient.py', + 'ambient_R.py', + 'ambient_eps.py', + 'ambient_g0.py', + 'ambient_g1.py', + 'constructor.py', + 'cuspidal_submodule.py', + 'defaults.py', + 'eis_series.py', + 'eisenstein_submodule.py', + 'element.py', + 'find_generators.py', + 'half_integral.py', + 'hecke_operator_on_qexp.py', + 'j_invariant.py', + 'l_series_gross_zagier.py', + 'notes.py', + 'numerical.py', + 'periods.py', + 'ring.py', + 'space.py', + 'submodule.py', + 'tests.py', + 'theta.py', + 'vm_basis.py', + 'weight1.py', + subdir : 'sage/modular/modform' ) extension_data = { diff --git a/src/sage/modular/modsym/meson.build b/src/sage/modular/modsym/meson.build index e3c62628de4..c2164d0f014 100644 --- a/src/sage/modular/modsym/meson.build +++ b/src/sage/modular/modsym/meson.build @@ -1,20 +1,20 @@ py.install_sources( - 'all.py', - 'ambient.py', - 'boundary.py', - 'element.py', - 'g1list.py', - 'ghlist.py', - 'hecke_operator.py', - 'manin_symbol_list.py', - 'modsym.py', - 'modular_symbols.py', - 'p1list_nf.py', - 'relation_matrix.py', - 'space.py', - 'subspace.py', - 'tests.py', - subdir: 'sage/modular/modsym', + 'all.py', + 'ambient.py', + 'boundary.py', + 'element.py', + 'g1list.py', + 'ghlist.py', + 'hecke_operator.py', + 'manin_symbol_list.py', + 'modsym.py', + 'modular_symbols.py', + 'p1list_nf.py', + 'relation_matrix.py', + 'space.py', + 'subspace.py', + 'tests.py', + subdir : 'sage/modular/modsym' ) extension_data = { diff --git a/src/sage/modular/pollack_stevens/meson.build b/src/sage/modular/pollack_stevens/meson.build index b2e360ee861..0ae6515ad80 100644 --- a/src/sage/modular/pollack_stevens/meson.build +++ b/src/sage/modular/pollack_stevens/meson.build @@ -1,13 +1,13 @@ py.install_sources( - 'all.py', - 'distributions.py', - 'fund_domain.py', - 'manin_map.py', - 'modsym.py', - 'padic_lseries.py', - 'sigma0.py', - 'space.py', - subdir: 'sage/modular/pollack_stevens', + 'all.py', + 'distributions.py', + 'fund_domain.py', + 'manin_map.py', + 'modsym.py', + 'padic_lseries.py', + 'sigma0.py', + 'space.py', + subdir : 'sage/modular/pollack_stevens' ) extension_data = { diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 6fcfc0f7ae4..73926e095d3 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -1,30 +1,30 @@ py.install_sources( - 'all.py', - 'complex_double_vector.py', - 'diamond_cutting.py', - 'filtered_vector_space.py', - 'free_module.py', - 'free_module_homspace.py', - 'free_module_integer.py', - 'free_module_morphism.py', - 'free_quadratic_module.py', - 'free_quadratic_module_integer_symmetric.py', - 'matrix_morphism.py', - 'misc.py', - 'module_functors.py', - 'multi_filtered_vector_space.py', - 'quotient_module.py', - 'real_double_vector.py', - 'submodule.py', - 'tensor_operations.py', - 'torsion_quadratic_module.py', - 'tutorial_free_modules.py', - 'vector_callable_symbolic_dense.py', - 'vector_space_homspace.py', - 'vector_space_morphism.py', - 'vector_symbolic_dense.py', - 'vector_symbolic_sparse.py', - subdir: 'sage/modules', + 'all.py', + 'complex_double_vector.py', + 'diamond_cutting.py', + 'filtered_vector_space.py', + 'free_module.py', + 'free_module_homspace.py', + 'free_module_integer.py', + 'free_module_morphism.py', + 'free_quadratic_module.py', + 'free_quadratic_module_integer_symmetric.py', + 'matrix_morphism.py', + 'misc.py', + 'module_functors.py', + 'multi_filtered_vector_space.py', + 'quotient_module.py', + 'real_double_vector.py', + 'submodule.py', + 'tensor_operations.py', + 'torsion_quadratic_module.py', + 'tutorial_free_modules.py', + 'vector_callable_symbolic_dense.py', + 'vector_space_homspace.py', + 'vector_space_morphism.py', + 'vector_symbolic_dense.py', + 'vector_symbolic_sparse.py', + subdir : 'sage/modules' ) extension_data = { diff --git a/src/sage/modules/with_basis/meson.build b/src/sage/modules/with_basis/meson.build index 55554a0aa4e..f1a4d6f1595 100644 --- a/src/sage/modules/with_basis/meson.build +++ b/src/sage/modules/with_basis/meson.build @@ -1,11 +1,11 @@ py.install_sources( - 'all.py', - 'cell_module.py', - 'invariant.py', - 'morphism.py', - 'representation.py', - 'subquotient.py', - subdir: 'sage/modules/with_basis', + 'all.py', + 'cell_module.py', + 'invariant.py', + 'morphism.py', + 'representation.py', + 'subquotient.py', + subdir : 'sage/modules/with_basis' ) extension_data = { diff --git a/src/sage/monoids/meson.build b/src/sage/monoids/meson.build index 6ded8192939..9a91c3c5501 100644 --- a/src/sage/monoids/meson.build +++ b/src/sage/monoids/meson.build @@ -1,17 +1,17 @@ py.install_sources( - 'all.py', - 'automatic_semigroup.py', - 'free_abelian_monoid.py', - 'free_monoid.py', - 'free_monoid_element.py', - 'hecke_monoid.py', - 'indexed_free_monoid.py', - 'monoid.py', - 'string_monoid.py', - 'string_monoid_element.py', - 'string_ops.py', - 'trace_monoid.py', - subdir: 'sage/monoids', + 'all.py', + 'automatic_semigroup.py', + 'free_abelian_monoid.py', + 'free_monoid.py', + 'free_monoid_element.py', + 'hecke_monoid.py', + 'indexed_free_monoid.py', + 'monoid.py', + 'string_monoid.py', + 'string_monoid_element.py', + 'string_ops.py', + 'trace_monoid.py', + subdir : 'sage/monoids' ) extension_data = { diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index 2b33de4a94e..6d82562abde 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -1,16 +1,16 @@ py.install_sources( - 'all.py', - 'all__sagemath_polyhedra.py', - 'cvxopt_backend_test.py', - 'cvxpy_backend_test.py', - 'generic_backend_test.py', - 'glpk_backend_test.py', - 'glpk_exact_backend_test.py', - 'interactivelp_backend_test.py', - 'logging_backend.py', - 'ppl_backend_test.py', - 'scip_backend_test.py', - subdir: 'sage/numerical/backends', + 'all.py', + 'all__sagemath_polyhedra.py', + 'cvxopt_backend_test.py', + 'cvxpy_backend_test.py', + 'generic_backend_test.py', + 'glpk_backend_test.py', + 'glpk_exact_backend_test.py', + 'interactivelp_backend_test.py', + 'logging_backend.py', + 'ppl_backend_test.py', + 'scip_backend_test.py', + subdir : 'sage/numerical/backends' ) extension_data = { diff --git a/src/sage/numerical/meson.build b/src/sage/numerical/meson.build index bb004a460c7..e78b0aa8ee6 100644 --- a/src/sage/numerical/meson.build +++ b/src/sage/numerical/meson.build @@ -1,12 +1,12 @@ py.install_sources( - 'all.py', - 'all__sagemath_polyhedra.py', - 'interactive_simplex_method.py', - 'knapsack.py', - 'linear_tensor.py', - 'linear_tensor_constraints.py', - 'optimize.py', - subdir: 'sage/numerical', + 'all.py', + 'all__sagemath_polyhedra.py', + 'interactive_simplex_method.py', + 'knapsack.py', + 'linear_tensor.py', + 'linear_tensor_constraints.py', + 'optimize.py', + subdir : 'sage/numerical' ) extension_data = { diff --git a/src/sage/plot/meson.build b/src/sage/plot/meson.build index a47688cf61f..38bc0d2deb8 100644 --- a/src/sage/plot/meson.build +++ b/src/sage/plot/meson.build @@ -1,35 +1,35 @@ py.install_sources( - 'all.py', - 'animate.py', - 'arc.py', - 'arrow.py', - 'bar_chart.py', - 'bezier_path.py', - 'circle.py', - 'colors.py', - 'contour_plot.py', - 'density_plot.py', - 'disk.py', - 'ellipse.py', - 'graphics.py', - 'histogram.py', - 'hyperbolic_arc.py', - 'hyperbolic_polygon.py', - 'hyperbolic_regular_polygon.py', - 'line.py', - 'matrix_plot.py', - 'misc.py', - 'multigraphics.py', - 'plot.py', - 'plot_field.py', - 'point.py', - 'polygon.py', - 'primitive.py', - 'scatter_plot.py', - 'step.py', - 'streamline_plot.py', - 'text.py', - subdir: 'sage/plot', + 'all.py', + 'animate.py', + 'arc.py', + 'arrow.py', + 'bar_chart.py', + 'bezier_path.py', + 'circle.py', + 'colors.py', + 'contour_plot.py', + 'density_plot.py', + 'disk.py', + 'ellipse.py', + 'graphics.py', + 'histogram.py', + 'hyperbolic_arc.py', + 'hyperbolic_polygon.py', + 'hyperbolic_regular_polygon.py', + 'line.py', + 'matrix_plot.py', + 'misc.py', + 'multigraphics.py', + 'plot.py', + 'plot_field.py', + 'point.py', + 'polygon.py', + 'primitive.py', + 'scatter_plot.py', + 'step.py', + 'streamline_plot.py', + 'text.py', + subdir : 'sage/plot' ) extension_data = { diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index b6b12e0ba6b..1f67c0de600 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -1,18 +1,18 @@ py.install_sources( - 'all.py', - 'implicit_plot3d.py', - 'introduction.py', - 'list_plot3d.py', - 'parametric_plot3d.py', - 'platonic.py', - 'plot3d.py', - 'plot_field3d.py', - 'revolution_plot3d.py', - 'shapes2.py', - 'tachyon.py', - 'texture.py', - 'tri_plot.py', - subdir: 'sage/plot/plot3d', + 'all.py', + 'implicit_plot3d.py', + 'introduction.py', + 'list_plot3d.py', + 'parametric_plot3d.py', + 'platonic.py', + 'plot3d.py', + 'plot_field3d.py', + 'revolution_plot3d.py', + 'shapes2.py', + 'tachyon.py', + 'texture.py', + 'tri_plot.py', + subdir : 'sage/plot/plot3d' ) extension_data = { diff --git a/src/sage/probability/meson.build b/src/sage/probability/meson.build index 92ac98eb026..f7cd120c89f 100644 --- a/src/sage/probability/meson.build +++ b/src/sage/probability/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'random_variable.py', - subdir: 'sage/probability', -) +py.install_sources('all.py', 'random_variable.py', subdir : 'sage/probability') extension_data = { 'probability_distribution': files('probability_distribution.pyx'), diff --git a/src/sage/quadratic_forms/meson.build b/src/sage/quadratic_forms/meson.build index 46581073301..34491d3c7ef 100644 --- a/src/sage/quadratic_forms/meson.build +++ b/src/sage/quadratic_forms/meson.build @@ -1,34 +1,34 @@ py.install_sources( - 'all.py', - 'binary_qf.py', - 'bqf_class_group.py', - 'constructions.py', - 'extras.py', - 'qfsolve.py', - 'quadratic_form.py', - 'quadratic_form__automorphisms.py', - 'quadratic_form__count_local_2.py', - 'quadratic_form__equivalence_testing.py', - 'quadratic_form__genus.py', - 'quadratic_form__local_density_congruence.py', - 'quadratic_form__local_density_interfaces.py', - 'quadratic_form__local_field_invariants.py', - 'quadratic_form__local_normal_form.py', - 'quadratic_form__local_representation_conditions.py', - 'quadratic_form__mass.py', - 'quadratic_form__mass__Conway_Sloane_masses.py', - 'quadratic_form__mass__Siegel_densities.py', - 'quadratic_form__neighbors.py', - 'quadratic_form__reduction_theory.py', - 'quadratic_form__siegel_product.py', - 'quadratic_form__split_local_covering.py', - 'quadratic_form__ternary_Tornaria.py', - 'quadratic_form__theta.py', - 'quadratic_form__variable_substitutions.py', - 'random_quadraticform.py', - 'special_values.py', - 'ternary_qf.py', - subdir: 'sage/quadratic_forms', + 'all.py', + 'binary_qf.py', + 'bqf_class_group.py', + 'constructions.py', + 'extras.py', + 'qfsolve.py', + 'quadratic_form.py', + 'quadratic_form__automorphisms.py', + 'quadratic_form__count_local_2.py', + 'quadratic_form__equivalence_testing.py', + 'quadratic_form__genus.py', + 'quadratic_form__local_density_congruence.py', + 'quadratic_form__local_density_interfaces.py', + 'quadratic_form__local_field_invariants.py', + 'quadratic_form__local_normal_form.py', + 'quadratic_form__local_representation_conditions.py', + 'quadratic_form__mass.py', + 'quadratic_form__mass__Conway_Sloane_masses.py', + 'quadratic_form__mass__Siegel_densities.py', + 'quadratic_form__neighbors.py', + 'quadratic_form__reduction_theory.py', + 'quadratic_form__siegel_product.py', + 'quadratic_form__split_local_covering.py', + 'quadratic_form__ternary_Tornaria.py', + 'quadratic_form__theta.py', + 'quadratic_form__variable_substitutions.py', + 'random_quadraticform.py', + 'special_values.py', + 'ternary_qf.py', + subdir : 'sage/quadratic_forms' ) extension_data = { diff --git a/src/sage/quivers/meson.build b/src/sage/quivers/meson.build index 35a7459ed1e..656f59c87dc 100644 --- a/src/sage/quivers/meson.build +++ b/src/sage/quivers/meson.build @@ -1,11 +1,12 @@ py.install_sources( - 'algebra.py', - 'all.py', - 'homspace.py', - 'morphism.py', - 'path_semigroup.py', - 'representation.py', - subdir: 'sage/quivers', + 'algebra.py', + 'all.py', + 'ar_quiver.py', + 'homspace.py', + 'morphism.py', + 'path_semigroup.py', + 'representation.py', + subdir : 'sage/quivers' ) extension_data = { diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build index 65d9d870063..1d25da30b04 100644 --- a/src/sage/rings/convert/meson.build +++ b/src/sage/rings/convert/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'mpfi.pxd', - subdir: 'sage/rings/convert', -) +py.install_sources('all.py', 'mpfi.pxd', subdir : 'sage/rings/convert') extension_data = { 'mpfi': files('mpfi.pyx'), diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build index c1935bab281..1f6ec21b1ee 100644 --- a/src/sage/rings/finite_rings/meson.build +++ b/src/sage/rings/finite_rings/meson.build @@ -1,28 +1,28 @@ py.install_sources( - 'all.py', - 'conway_polynomials.py', - 'element_base.pxd', - 'element_givaro.pxd', - 'element_ntl_gf2e.pxd', - 'element_pari_ffelt.pxd', - 'finite_field_base.pxd', - 'finite_field_constructor.py', - 'finite_field_givaro.py', - 'finite_field_ntl_gf2e.py', - 'finite_field_pari_ffelt.py', - 'finite_field_prime_modn.py', - 'galois_group.py', - 'hom_finite_field.pxd', - 'hom_finite_field_givaro.pxd', - 'hom_prime_finite_field.pxd', - 'homset.py', - 'integer_mod.pxd', - 'integer_mod_limits.h', - 'integer_mod_ring.py', - 'maps_finite_field.py', - 'residue_field.pxd', - 'stdint.pxd', - subdir: 'sage/rings/finite_rings', + 'all.py', + 'conway_polynomials.py', + 'element_base.pxd', + 'element_givaro.pxd', + 'element_ntl_gf2e.pxd', + 'element_pari_ffelt.pxd', + 'finite_field_base.pxd', + 'finite_field_constructor.py', + 'finite_field_givaro.py', + 'finite_field_ntl_gf2e.py', + 'finite_field_pari_ffelt.py', + 'finite_field_prime_modn.py', + 'galois_group.py', + 'hom_finite_field.pxd', + 'hom_finite_field_givaro.pxd', + 'hom_prime_finite_field.pxd', + 'homset.py', + 'integer_mod.pxd', + 'integer_mod_limits.h', + 'integer_mod_ring.py', + 'maps_finite_field.py', + 'residue_field.pxd', + 'stdint.pxd', + subdir : 'sage/rings/finite_rings' ) extension_data = { diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build index 501d28f8015..0a805390fcd 100644 --- a/src/sage/rings/function_field/meson.build +++ b/src/sage/rings/function_field/meson.build @@ -1,30 +1,30 @@ py.install_sources( - 'all.py', - 'constructor.py', - 'derivations.py', - 'derivations_polymod.py', - 'derivations_rational.py', - 'differential.py', - 'divisor.py', - 'element.pxd', - 'extensions.py', - 'function_field.py', - 'function_field_polymod.py', - 'function_field_rational.py', - 'ideal.py', - 'ideal_polymod.py', - 'ideal_rational.py', - 'maps.py', - 'order.py', - 'order_basis.py', - 'order_polymod.py', - 'order_rational.py', - 'place.py', - 'place_polymod.py', - 'place_rational.py', - 'valuation.py', - 'valuation_ring.py', - subdir: 'sage/rings/function_field', + 'all.py', + 'constructor.py', + 'derivations.py', + 'derivations_polymod.py', + 'derivations_rational.py', + 'differential.py', + 'divisor.py', + 'element.pxd', + 'extensions.py', + 'function_field.py', + 'function_field_polymod.py', + 'function_field_rational.py', + 'ideal.py', + 'ideal_polymod.py', + 'ideal_rational.py', + 'maps.py', + 'order.py', + 'order_basis.py', + 'order_polymod.py', + 'order_rational.py', + 'place.py', + 'place_polymod.py', + 'place_rational.py', + 'valuation.py', + 'valuation_ring.py', + subdir : 'sage/rings/function_field' ) extension_data = { diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 3559d7b0471..88f97458fbd 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -5,87 +5,87 @@ pthread = declare_dependency( ) py.install_sources( - '__init__.py', - 'abc.pxd', - 'algebraic_closure_finite_field.py', - 'all.py', - 'all__sagemath_categories.py', - 'all__sagemath_objects.py', - 'big_oh.py', - 'cc.py', - 'cfinite_sequence.py', - 'cif.py', - 'commutative_algebra.py', - 'complex_arb.pxd', - 'complex_conversion.pxd', - 'complex_double.pxd', - 'complex_interval.pxd', - 'complex_interval_field.py', - 'complex_mpc.pxd', - 'complex_mpfr.pxd', - 'continued_fraction.py', - 'continued_fraction_gosper.py', - 'derivation.py', - 'fast_arith.pxd', - 'fraction_field.py', - 'fraction_field_FpT.pxd', - 'generic.py', - 'homset.py', - 'ideal.py', - 'ideal_monoid.py', - 'imaginary_unit.py', - 'infinity.py', - 'integer.pxd', - 'integer.pyx', - 'integer_fake.h', - 'integer_fake.pxd', - 'integer_ring.pxd', - 'integer_ring.pyx', - 'laurent_series_ring.py', - 'laurent_series_ring_element.pxd', - 'lazy_series.py', - 'lazy_series_ring.py', - 'localization.py', - 'monomials.py', - 'morphism.pxd', - 'multi_power_series_ring.py', - 'multi_power_series_ring_element.py', - 'numbers_abc.py', - 'pari_ring.py', - 'power_series_mpoly.pxd', - 'power_series_pari.pxd', - 'power_series_poly.pxd', - 'power_series_ring.py', - 'power_series_ring_element.pxd', - 'puiseux_series_ring.py', - 'puiseux_series_ring_element.pxd', - 'qqbar.py', - 'qqbar_decorators.py', - 'quotient_ring.py', - 'quotient_ring_element.py', - 'rational.pxd', - 'rational.pyx', - 'rational_field.py', - 'real_arb.pxd', - 'real_double.pxd', - 'real_double_element_gsl.pxd', - 'real_field.py', - 'real_lazy.pxd', - 'real_mpfi.pxd', - 'real_mpfr.pxd', - 'ring.pxd', - 'ring_extension.pxd', - 'ring_extension_conversion.pxd', - 'ring_extension_element.pxd', - 'ring_extension_homset.py', - 'ring_extension_morphism.pxd', - 'sum_of_squares.pxd', - 'tate_algebra.py', - 'tate_algebra_element.pxd', - 'tate_algebra_ideal.pxd', - 'tests.py', - 'universal_cyclotomic_field.py', - subdir: 'sage/rings', + '__init__.py', + 'abc.pxd', + 'algebraic_closure_finite_field.py', + 'all.py', + 'all__sagemath_categories.py', + 'all__sagemath_objects.py', + 'big_oh.py', + 'cc.py', + 'cfinite_sequence.py', + 'cif.py', + 'commutative_algebra.py', + 'complex_arb.pxd', + 'complex_conversion.pxd', + 'complex_double.pxd', + 'complex_interval.pxd', + 'complex_interval_field.py', + 'complex_mpc.pxd', + 'complex_mpfr.pxd', + 'continued_fraction.py', + 'continued_fraction_gosper.py', + 'derivation.py', + 'fast_arith.pxd', + 'fraction_field.py', + 'fraction_field_FpT.pxd', + 'generic.py', + 'homset.py', + 'ideal.py', + 'ideal_monoid.py', + 'imaginary_unit.py', + 'infinity.py', + 'integer.pxd', + 'integer.pyx', + 'integer_fake.h', + 'integer_fake.pxd', + 'integer_ring.pxd', + 'integer_ring.pyx', + 'laurent_series_ring.py', + 'laurent_series_ring_element.pxd', + 'lazy_series.py', + 'lazy_series_ring.py', + 'localization.py', + 'monomials.py', + 'morphism.pxd', + 'multi_power_series_ring.py', + 'multi_power_series_ring_element.py', + 'numbers_abc.py', + 'pari_ring.py', + 'power_series_mpoly.pxd', + 'power_series_pari.pxd', + 'power_series_poly.pxd', + 'power_series_ring.py', + 'power_series_ring_element.pxd', + 'puiseux_series_ring.py', + 'puiseux_series_ring_element.pxd', + 'qqbar.py', + 'qqbar_decorators.py', + 'quotient_ring.py', + 'quotient_ring_element.py', + 'rational.pxd', + 'rational.pyx', + 'rational_field.py', + 'real_arb.pxd', + 'real_double.pxd', + 'real_double_element_gsl.pxd', + 'real_field.py', + 'real_lazy.pxd', + 'real_mpfi.pxd', + 'real_mpfr.pxd', + 'ring.pxd', + 'ring_extension.pxd', + 'ring_extension_conversion.pxd', + 'ring_extension_element.pxd', + 'ring_extension_homset.py', + 'ring_extension_morphism.pxd', + 'sum_of_squares.pxd', + 'tate_algebra.py', + 'tate_algebra_element.pxd', + 'tate_algebra_ideal.pxd', + 'tests.py', + 'universal_cyclotomic_field.py', + subdir : 'sage/rings' ) extension_data = { diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index 35ba8a30451..c80ad347dd3 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -1,31 +1,31 @@ py.install_sources( - 'S_unit_solver.py', - 'all.py', - 'bdd_height.py', - 'class_group.py', - 'galois_group.py', - 'homset.py', - 'maps.py', - 'morphism.py', - 'number_field.py', - 'number_field_base.pxd', - 'number_field_element.pxd', - 'number_field_element_base.pxd', - 'number_field_element_quadratic.pxd', - 'number_field_ideal.py', - 'number_field_ideal_rel.py', - 'number_field_rel.py', - 'order.py', - 'order_ideal.py', - 'selmer_group.py', - 'small_primes_of_degree_one.py', - 'splitting_field.py', - 'structure.py', - 'totallyreal_data.pxd', - 'totallyreal_phc.py', - 'totallyreal_rel.py', - 'unit_group.py', - subdir: 'sage/rings/number_field', + 'S_unit_solver.py', + 'all.py', + 'bdd_height.py', + 'class_group.py', + 'galois_group.py', + 'homset.py', + 'maps.py', + 'morphism.py', + 'number_field.py', + 'number_field_base.pxd', + 'number_field_element.pxd', + 'number_field_element_base.pxd', + 'number_field_element_quadratic.pxd', + 'number_field_ideal.py', + 'number_field_ideal_rel.py', + 'number_field_rel.py', + 'order.py', + 'order_ideal.py', + 'selmer_group.py', + 'small_primes_of_degree_one.py', + 'splitting_field.py', + 'structure.py', + 'totallyreal_data.pxd', + 'totallyreal_phc.py', + 'totallyreal_rel.py', + 'unit_group.py', + subdir : 'sage/rings/number_field' ) extension_data = { diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index b59328f5271..d381b35d529 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -1,52 +1,52 @@ py.install_sources( - 'all.py', - 'common_conversion.pxd', - 'eisenstein_extension_generic.py', - 'factory.py', - 'generic_nodes.py', - 'lattice_precision.py', - 'local_generic.py', - 'local_generic_element.pxd', - 'misc.py', - 'morphism.pxd', - 'padic_ZZ_pX_CA_element.pxd', - 'padic_ZZ_pX_CR_element.pxd', - 'padic_ZZ_pX_FM_element.pxd', - 'padic_ZZ_pX_element.pxd', - 'padic_base_generic.py', - 'padic_base_leaves.py', - 'padic_capped_absolute_element.pxd', - 'padic_capped_relative_element.pxd', - 'padic_ext_element.pxd', - 'padic_extension_generic.py', - 'padic_extension_leaves.py', - 'padic_fixed_mod_element.pxd', - 'padic_floating_point_element.pxd', - 'padic_generic.py', - 'padic_generic_element.pxd', - 'padic_lattice_element.py', - 'padic_printing.pxd', - 'padic_relaxed_element.pxd', - 'padic_relaxed_errors.pxd', - 'padic_valuation.py', - 'pow_computer.pxd', - 'pow_computer_ext.pxd', - 'pow_computer_flint.pxd', - 'pow_computer_relative.pxd', - 'precision_error.py', - 'qadic_flint_CA.pxd', - 'qadic_flint_CR.pxd', - 'qadic_flint_FM.pxd', - 'qadic_flint_FP.pxd', - 'relative_extension_leaves.py', - 'relative_ramified_CA.pxd', - 'relative_ramified_CR.pxd', - 'relative_ramified_FM.pxd', - 'relative_ramified_FP.pxd', - 'tests.py', - 'tutorial.py', - 'unramified_extension_generic.py', - subdir: 'sage/rings/padics', + 'all.py', + 'common_conversion.pxd', + 'eisenstein_extension_generic.py', + 'factory.py', + 'generic_nodes.py', + 'lattice_precision.py', + 'local_generic.py', + 'local_generic_element.pxd', + 'misc.py', + 'morphism.pxd', + 'padic_ZZ_pX_CA_element.pxd', + 'padic_ZZ_pX_CR_element.pxd', + 'padic_ZZ_pX_FM_element.pxd', + 'padic_ZZ_pX_element.pxd', + 'padic_base_generic.py', + 'padic_base_leaves.py', + 'padic_capped_absolute_element.pxd', + 'padic_capped_relative_element.pxd', + 'padic_ext_element.pxd', + 'padic_extension_generic.py', + 'padic_extension_leaves.py', + 'padic_fixed_mod_element.pxd', + 'padic_floating_point_element.pxd', + 'padic_generic.py', + 'padic_generic_element.pxd', + 'padic_lattice_element.py', + 'padic_printing.pxd', + 'padic_relaxed_element.pxd', + 'padic_relaxed_errors.pxd', + 'padic_valuation.py', + 'pow_computer.pxd', + 'pow_computer_ext.pxd', + 'pow_computer_flint.pxd', + 'pow_computer_relative.pxd', + 'precision_error.py', + 'qadic_flint_CA.pxd', + 'qadic_flint_CR.pxd', + 'qadic_flint_FM.pxd', + 'qadic_flint_FP.pxd', + 'relative_extension_leaves.py', + 'relative_ramified_CA.pxd', + 'relative_ramified_CR.pxd', + 'relative_ramified_FM.pxd', + 'relative_ramified_FP.pxd', + 'tests.py', + 'tutorial.py', + 'unramified_extension_generic.py', + subdir : 'sage/rings/padics' ) extension_data = { diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index dbc0189b826..7b33a03d125 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -1,69 +1,69 @@ py.install_sources( - 'all.py', - 'binary_form_reduce.py', - 'commutative_polynomial.pxd', - 'complex_roots.py', - 'convolution.py', - 'evaluation.pxd', - 'evaluation_flint.pxd', - 'evaluation_ntl.pxd', - 'flatten.py', - 'groebner_fan.py', - 'ideal.py', - 'infinite_polynomial_element.py', - 'infinite_polynomial_ring.py', - 'integer_valued_polynomials.py', - 'laurent_polynomial.pxd', - 'laurent_polynomial_ideal.py', - 'laurent_polynomial_mpair.pxd', - 'laurent_polynomial_ring.py', - 'laurent_polynomial_ring_base.py', - 'msolve.py', - 'multi_polynomial.pxd', - 'multi_polynomial_element.py', - 'multi_polynomial_ideal.py', - 'multi_polynomial_ideal_libsingular.pxd', - 'multi_polynomial_libsingular.pxd', - 'multi_polynomial_ring.py', - 'multi_polynomial_ring_base.pxd', - 'multi_polynomial_sequence.py', - 'omega.py', - 'ore_function_element.py', - 'ore_function_field.py', - 'ore_polynomial_element.pxd', - 'ore_polynomial_ring.py', - 'plural.pxd', - 'polydict.pxd', - 'polynomial_compiled.pxd', - 'polynomial_complex_arb.pxd', - 'polynomial_element.pxd', - 'polynomial_element_generic.py', - 'polynomial_fateman.py', - 'polynomial_gf2x.pxd', - 'polynomial_integer_dense_flint.pxd', - 'polynomial_integer_dense_ntl.pxd', - 'polynomial_modn_dense_ntl.pxd', - 'polynomial_quotient_ring.py', - 'polynomial_quotient_ring_element.py', - 'polynomial_rational_flint.pxd', - 'polynomial_ring.py', - 'polynomial_ring_constructor.py', - 'polynomial_ring_homomorphism.pxd', - 'polynomial_singular_interface.py', - 'polynomial_zmod_flint.pxd', - 'polynomial_zz_pex.pxd', - 'real_roots.pxd', - 'skew_polynomial_element.pxd', - 'skew_polynomial_finite_field.pxd', - 'skew_polynomial_finite_order.pxd', - 'skew_polynomial_ring.py', - 'symmetric_ideal.py', - 'symmetric_reduction.pxd', - 'term_order.py', - 'toy_buchberger.py', - 'toy_d_basis.py', - 'toy_variety.py', - subdir: 'sage/rings/polynomial', + 'all.py', + 'binary_form_reduce.py', + 'commutative_polynomial.pxd', + 'complex_roots.py', + 'convolution.py', + 'evaluation.pxd', + 'evaluation_flint.pxd', + 'evaluation_ntl.pxd', + 'flatten.py', + 'groebner_fan.py', + 'ideal.py', + 'infinite_polynomial_element.py', + 'infinite_polynomial_ring.py', + 'integer_valued_polynomials.py', + 'laurent_polynomial.pxd', + 'laurent_polynomial_ideal.py', + 'laurent_polynomial_mpair.pxd', + 'laurent_polynomial_ring.py', + 'laurent_polynomial_ring_base.py', + 'msolve.py', + 'multi_polynomial.pxd', + 'multi_polynomial_element.py', + 'multi_polynomial_ideal.py', + 'multi_polynomial_ideal_libsingular.pxd', + 'multi_polynomial_libsingular.pxd', + 'multi_polynomial_ring.py', + 'multi_polynomial_ring_base.pxd', + 'multi_polynomial_sequence.py', + 'omega.py', + 'ore_function_element.py', + 'ore_function_field.py', + 'ore_polynomial_element.pxd', + 'ore_polynomial_ring.py', + 'plural.pxd', + 'polydict.pxd', + 'polynomial_compiled.pxd', + 'polynomial_complex_arb.pxd', + 'polynomial_element.pxd', + 'polynomial_element_generic.py', + 'polynomial_fateman.py', + 'polynomial_gf2x.pxd', + 'polynomial_integer_dense_flint.pxd', + 'polynomial_integer_dense_ntl.pxd', + 'polynomial_modn_dense_ntl.pxd', + 'polynomial_quotient_ring.py', + 'polynomial_quotient_ring_element.py', + 'polynomial_rational_flint.pxd', + 'polynomial_ring.py', + 'polynomial_ring_constructor.py', + 'polynomial_ring_homomorphism.pxd', + 'polynomial_singular_interface.py', + 'polynomial_zmod_flint.pxd', + 'polynomial_zz_pex.pxd', + 'real_roots.pxd', + 'skew_polynomial_element.pxd', + 'skew_polynomial_finite_field.pxd', + 'skew_polynomial_finite_order.pxd', + 'skew_polynomial_ring.py', + 'symmetric_ideal.py', + 'symmetric_reduction.pxd', + 'term_order.py', + 'toy_buchberger.py', + 'toy_d_basis.py', + 'toy_variety.py', + subdir : 'sage/rings/polynomial' ) extension_data = { diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index ed61f857d0f..dd562bfbb72 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -7,27 +7,27 @@ brial = declare_dependency( brial_groebner = cc.find_library('brial_groebner') py.install_sources( - 'PyPolyBoRi.py', - '__init__.py', - 'blocks.py', - 'cnf.py', - 'easy_polynomials.py', - 'fglm.py', - 'frontend.py', - 'gbcore.py', - 'gbrefs.py', - 'heuristics.py', - 'interpolate.py', - 'interred.py', - 'll.py', - 'nf.py', - 'parallel.py', - 'pbori.pxd', - 'randompoly.py', - 'rank.py', - 'specialsets.py', - 'statistics.py', - subdir: 'sage/rings/polynomial/pbori', + 'PyPolyBoRi.py', + '__init__.py', + 'blocks.py', + 'cnf.py', + 'easy_polynomials.py', + 'fglm.py', + 'frontend.py', + 'gbcore.py', + 'gbrefs.py', + 'heuristics.py', + 'interpolate.py', + 'interred.py', + 'll.py', + 'nf.py', + 'parallel.py', + 'pbori.pxd', + 'randompoly.py', + 'rank.py', + 'specialsets.py', + 'statistics.py', + subdir : 'sage/rings/polynomial/pbori' ) extension_data_cpp = { diff --git a/src/sage/rings/polynomial/weil/meson.build b/src/sage/rings/polynomial/weil/meson.build index 5db5abe197e..289aa681bc8 100644 --- a/src/sage/rings/polynomial/weil/meson.build +++ b/src/sage/rings/polynomial/weil/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'power_sums.h', - subdir: 'sage/rings/polynomial/weil', -) +py.install_sources('all.py', 'power_sums.h', subdir : 'sage/rings/polynomial/weil') extension_data = { 'weil_polynomials': files('weil_polynomials.pyx'), diff --git a/src/sage/rings/semirings/meson.build b/src/sage/rings/semirings/meson.build index 564c23df0e5..2aced319c9b 100644 --- a/src/sage/rings/semirings/meson.build +++ b/src/sage/rings/semirings/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'non_negative_integer_semiring.py', - subdir: 'sage/rings/semirings', -) +py.install_sources('all.py', 'non_negative_integer_semiring.py', subdir : 'sage/rings/semirings') extension_data = { 'tropical_semiring': files('tropical_semiring.pyx'), diff --git a/src/sage/sat/meson.build b/src/sage/sat/meson.build index 33cdb49894b..4452288133f 100644 --- a/src/sage/sat/meson.build +++ b/src/sage/sat/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'boolean_polynomials.py', - subdir: 'sage/sat', -) +py.install_sources('all.py', 'boolean_polynomials.py', subdir : 'sage/sat') install_subdir('converters', install_dir: sage_install_dir / 'sat') subdir('solvers') diff --git a/src/sage/sat/solvers/meson.build b/src/sage/sat/solvers/meson.build index 8815ab02d49..cadccba7e34 100644 --- a/src/sage/sat/solvers/meson.build +++ b/src/sage/sat/solvers/meson.build @@ -1,10 +1,10 @@ py.install_sources( - '__init__.py', - 'cryptominisat.py', - 'dimacs.py', - 'picosat.py', - 'sat_lp.py', - subdir: 'sage/sat/solvers', + '__init__.py', + 'cryptominisat.py', + 'dimacs.py', + 'picosat.py', + 'sat_lp.py', + subdir : 'sage/sat/solvers' ) extension_data = { diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index d6120830312..44de6cba489 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -1,55 +1,55 @@ py.install_sources( - 'BSD.py', - 'Qcurves.py', - 'all.py', - 'cardinality.py', - 'cm.py', - 'constructor.py', - 'ec_database.py', - 'ell_curve_isogeny.py', - 'ell_egros.py', - 'ell_field.py', - 'ell_finite_field.py', - 'ell_generic.py', - 'ell_local_data.py', - 'ell_modular_symbols.py', - 'ell_number_field.py', - 'ell_padic_field.py', - 'ell_point.py', - 'ell_rational_field.py', - 'ell_tate_curve.py', - 'ell_torsion.py', - 'ell_wp.py', - 'formal_group.py', - 'gal_reps.py', - 'gal_reps_number_field.py', - 'gp_simon.py', - 'heegner.py', - 'height.py', - 'hom.py', - 'hom_composite.py', - 'hom_frobenius.py', - 'hom_scalar.py', - 'hom_sum.py', - 'hom_velusqrt.py', - 'homset.py', - 'isogeny_class.py', - 'isogeny_small_degree.py', - 'jacobian.py', - 'kodaira_symbol.py', - 'kraus.py', - 'lseries_ell.py', - 'mod5family.py', - 'mod_poly.py', - 'modular_parametrization.py', - 'padic_lseries.py', - 'padics.py', - 'period_lattice.py', - 'saturation.py', - 'sha_tate.py', - 'weierstrass_morphism.py', - 'weierstrass_transform.py', - subdir: 'sage/schemes/elliptic_curves', + 'BSD.py', + 'Qcurves.py', + 'all.py', + 'cardinality.py', + 'cm.py', + 'constructor.py', + 'ec_database.py', + 'ell_curve_isogeny.py', + 'ell_egros.py', + 'ell_field.py', + 'ell_finite_field.py', + 'ell_generic.py', + 'ell_local_data.py', + 'ell_modular_symbols.py', + 'ell_number_field.py', + 'ell_padic_field.py', + 'ell_point.py', + 'ell_rational_field.py', + 'ell_tate_curve.py', + 'ell_torsion.py', + 'ell_wp.py', + 'formal_group.py', + 'gal_reps.py', + 'gal_reps_number_field.py', + 'gp_simon.py', + 'heegner.py', + 'height.py', + 'hom.py', + 'hom_composite.py', + 'hom_frobenius.py', + 'hom_scalar.py', + 'hom_sum.py', + 'hom_velusqrt.py', + 'homset.py', + 'isogeny_class.py', + 'isogeny_small_degree.py', + 'jacobian.py', + 'kodaira_symbol.py', + 'kraus.py', + 'lseries_ell.py', + 'mod5family.py', + 'mod_poly.py', + 'modular_parametrization.py', + 'padic_lseries.py', + 'padics.py', + 'period_lattice.py', + 'saturation.py', + 'sha_tate.py', + 'weierstrass_morphism.py', + 'weierstrass_transform.py', + subdir : 'sage/schemes/elliptic_curves' ) extension_data = { diff --git a/src/sage/schemes/hyperelliptic_curves/meson.build b/src/sage/schemes/hyperelliptic_curves/meson.build index 35cdc5c72a8..4e8d22b388b 100644 --- a/src/sage/schemes/hyperelliptic_curves/meson.build +++ b/src/sage/schemes/hyperelliptic_curves/meson.build @@ -1,22 +1,22 @@ inc_hypellfrob = include_directories('hypellfrob') py.install_sources( - 'all.py', - 'constructor.py', - 'hyperelliptic_finite_field.py', - 'hyperelliptic_g2.py', - 'hyperelliptic_generic.py', - 'hyperelliptic_padic_field.py', - 'hyperelliptic_rational_field.py', - 'invariants.py', - 'jacobian_endomorphism_utils.py', - 'jacobian_g2.py', - 'jacobian_generic.py', - 'jacobian_homset.py', - 'jacobian_morphism.py', - 'kummer_surface.py', - 'mestre.py', - 'monsky_washnitzer.py', - subdir: 'sage/schemes/hyperelliptic_curves', + 'all.py', + 'constructor.py', + 'hyperelliptic_finite_field.py', + 'hyperelliptic_g2.py', + 'hyperelliptic_generic.py', + 'hyperelliptic_padic_field.py', + 'hyperelliptic_rational_field.py', + 'invariants.py', + 'jacobian_endomorphism_utils.py', + 'jacobian_g2.py', + 'jacobian_generic.py', + 'jacobian_homset.py', + 'jacobian_morphism.py', + 'kummer_surface.py', + 'mestre.py', + 'monsky_washnitzer.py', + subdir : 'sage/schemes/hyperelliptic_curves' ) extension_data_cpp = { diff --git a/src/sage/schemes/meson.build b/src/sage/schemes/meson.build index 6ef40ff5257..32825f600ed 100644 --- a/src/sage/schemes/meson.build +++ b/src/sage/schemes/meson.build @@ -1,8 +1,4 @@ -py.install_sources( - 'all.py', - 'overview.py', - subdir: 'sage/schemes', -) +py.install_sources('all.py', 'overview.py', subdir : 'sage/schemes') install_subdir('affine', install_dir: sage_install_dir / 'schemes') install_subdir('berkovich', install_dir: sage_install_dir / 'schemes') diff --git a/src/sage/schemes/toric/meson.build b/src/sage/schemes/toric/meson.build index 36e4b8fd991..edd53dc00a2 100644 --- a/src/sage/schemes/toric/meson.build +++ b/src/sage/schemes/toric/meson.build @@ -1,19 +1,19 @@ py.install_sources( - 'all.py', - 'chow_group.py', - 'divisor.py', - 'fano_variety.py', - 'homset.py', - 'ideal.py', - 'library.py', - 'morphism.py', - 'points.py', - 'toric_subscheme.py', - 'variety.py', - 'weierstrass.py', - 'weierstrass_covering.py', - 'weierstrass_higher.py', - subdir: 'sage/schemes/toric', + 'all.py', + 'chow_group.py', + 'divisor.py', + 'fano_variety.py', + 'homset.py', + 'ideal.py', + 'library.py', + 'morphism.py', + 'points.py', + 'toric_subscheme.py', + 'variety.py', + 'weierstrass.py', + 'weierstrass_covering.py', + 'weierstrass_higher.py', + subdir : 'sage/schemes/toric' ) extension_data = { diff --git a/src/sage/sets/meson.build b/src/sage/sets/meson.build index 21a5d244f32..5473a4f2dae 100644 --- a/src/sage/sets/meson.build +++ b/src/sage/sets/meson.build @@ -1,26 +1,26 @@ py.install_sources( - 'all.py', - 'all__sagemath_objects.py', - 'cartesian_product.py', - 'condition_set.py', - 'disjoint_set.pxd', - 'disjoint_union_enumerated_sets.py', - 'family.pxd', - 'finite_enumerated_set.py', - 'finite_set_map_cy.pxd', - 'finite_set_maps.py', - 'image_set.py', - 'integer_range.py', - 'non_negative_integers.py', - 'positive_integers.py', - 'primes.py', - 'pythonclass.pxd', - 'real_set.py', - 'recursively_enumerated_set.pxd', - 'set.py', - 'set_from_iterator.py', - 'totally_ordered_finite_set.py', - subdir: 'sage/sets', + 'all.py', + 'all__sagemath_objects.py', + 'cartesian_product.py', + 'condition_set.py', + 'disjoint_set.pxd', + 'disjoint_union_enumerated_sets.py', + 'family.pxd', + 'finite_enumerated_set.py', + 'finite_set_map_cy.pxd', + 'finite_set_maps.py', + 'image_set.py', + 'integer_range.py', + 'non_negative_integers.py', + 'positive_integers.py', + 'primes.py', + 'pythonclass.pxd', + 'real_set.py', + 'recursively_enumerated_set.pxd', + 'set.py', + 'set_from_iterator.py', + 'totally_ordered_finite_set.py', + subdir : 'sage/sets' ) extension_data = { diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index b5b8a74e3bb..ee946bae683 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - 'all.py', - 'discrete_gaussian_lattice.py', - 'discrete_gaussian_polynomial.py', - subdir: 'sage/stats/distributions', -) +py.install_sources('all.py', 'discrete_gaussian_lattice.py', 'discrete_gaussian_polynomial.py', subdir : 'sage/stats/distributions') extension_data = { 'discrete_gaussian_integer': files('discrete_gaussian_integer.pyx', 'dgs_gauss_mp.c', 'dgs_gauss_dp.c', 'dgs_bern.c'), diff --git a/src/sage/stats/hmm/meson.build b/src/sage/stats/hmm/meson.build index d9aefe474aa..f75f868ebbf 100644 --- a/src/sage/stats/hmm/meson.build +++ b/src/sage/stats/hmm/meson.build @@ -1,7 +1,4 @@ -py.install_sources( - 'all.py', - subdir: 'sage/stats/hmm', -) +py.install_sources('all.py', subdir : 'sage/stats/hmm') extension_data = { 'chmm': files('chmm.pyx'), diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build index 341048d7f5e..6c1749f2a52 100644 --- a/src/sage/stats/meson.build +++ b/src/sage/stats/meson.build @@ -1,9 +1,4 @@ -py.install_sources( - 'all.py', - 'basic_stats.py', - 'r.py', - subdir: 'sage/stats', -) +py.install_sources('all.py', 'basic_stats.py', 'r.py', subdir : 'sage/stats') extension_data = { 'intlist': files('intlist.pyx'), diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index a1500cbbb8b..84a585b48fd 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -1,40 +1,40 @@ py.install_sources( - '__init__.py', - 'all.py', - 'category_object.pxd', - 'coerce.pxd', - 'coerce_actions.pxd', - 'coerce_dict.pxd', - 'coerce_exceptions.py', - 'coerce_maps.pxd', - 'debug_options.pxd', - 'dynamic_class.py', - 'element.pxd', - 'element_wrapper.pxd', - 'factorization.py', - 'factorization_integer.py', - 'formal_sum.py', - 'gens_py.py', - 'global_options.py', - 'indexed_generators.py', - 'list_clone.pxd', - 'list_clone_timings.py', - 'mutability.pxd', - 'nonexact.py', - 'parent.pxd', - 'parent_base.pxd', - 'parent_gens.pxd', - 'parent_old.pxd', - 'richcmp.pxd', - 'sage_object.pxd', - 'sage_object_test.py', - 'sequence.py', - 'set_factories.py', - 'set_factories_example.py', - 'support_view.py', - 'test_factory.py', - 'unique_representation.py', - subdir: 'sage/structure', + '__init__.py', + 'all.py', + 'category_object.pxd', + 'coerce.pxd', + 'coerce_actions.pxd', + 'coerce_dict.pxd', + 'coerce_exceptions.py', + 'coerce_maps.pxd', + 'debug_options.pxd', + 'dynamic_class.py', + 'element.pxd', + 'element_wrapper.pxd', + 'factorization.py', + 'factorization_integer.py', + 'formal_sum.py', + 'gens_py.py', + 'global_options.py', + 'indexed_generators.py', + 'list_clone.pxd', + 'list_clone_timings.py', + 'mutability.pxd', + 'nonexact.py', + 'parent.pxd', + 'parent_base.pxd', + 'parent_gens.pxd', + 'parent_old.pxd', + 'richcmp.pxd', + 'sage_object.pxd', + 'sage_object_test.py', + 'sequence.py', + 'set_factories.py', + 'set_factories_example.py', + 'support_view.py', + 'test_factory.py', + 'unique_representation.py', + subdir : 'sage/structure' ) extension_data = { diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index 2acc0fdf825..c188569acd0 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -2,31 +2,31 @@ inc_ginac = include_directories('ginac') inc_pynac = include_directories('.') py.install_sources( - '__init__.py', - 'all.py', - 'assumptions.py', - 'benchmark.py', - 'callable.py', - 'complexity_measures.py', - 'constants.py', - 'expression.pxd', - 'expression_conversion_algebraic.py', - 'expression_conversion_sympy.py', - 'expression_conversions.py', - 'function.pxd', - 'function_factory.py', - 'maxima_wrapper.py', - 'operators.py', - 'pynac_wrap.h', - 'random_tests.py', - 'relation.py', - 'ring.pxd', - 'subring.py', - 'symbols.py', - 'symengine.py', - 'tests.py', - 'units.py', - subdir: 'sage/symbolic', + '__init__.py', + 'all.py', + 'assumptions.py', + 'benchmark.py', + 'callable.py', + 'complexity_measures.py', + 'constants.py', + 'expression.pxd', + 'expression_conversion_algebraic.py', + 'expression_conversion_sympy.py', + 'expression_conversions.py', + 'function.pxd', + 'function_factory.py', + 'maxima_wrapper.py', + 'operators.py', + 'pynac_wrap.h', + 'random_tests.py', + 'relation.py', + 'ring.pxd', + 'subring.py', + 'symbols.py', + 'symengine.py', + 'tests.py', + 'units.py', + subdir : 'sage/symbolic' ) extension_data = { diff --git a/src/sage/tests/meson.build b/src/sage/tests/meson.build index 0ec4233334a..2892f5bb0fa 100644 --- a/src/sage/tests/meson.build +++ b/src/sage/tests/meson.build @@ -1,26 +1,26 @@ py.install_sources( - '__init__.py', - 'all.py', - 'article_heuberger_krenn_kropf_fsm-in-sage.py', - 'arxiv_0812_2725.py', - 'benchmark.py', - 'book_schilling_zabrocki_kschur_primer.py', - 'book_stein_ent.py', - 'book_stein_modform.py', - 'cmdline.py', - 'combinatorial_hopf_algebras.py', - 'finite_poset.py', - 'functools_partial_src.py', - 'gosper-sum.py', - 'lazy_imports.py', - 'modular_group_cohomology.py', - 'numpy.py', - 'parigp.py', - 'startup.py', - 'symbolic-series.py', - 'sympy.py', - 'test_deprecation.py', - subdir: 'sage/tests', + '__init__.py', + 'all.py', + 'article_heuberger_krenn_kropf_fsm-in-sage.py', + 'arxiv_0812_2725.py', + 'benchmark.py', + 'book_schilling_zabrocki_kschur_primer.py', + 'book_stein_ent.py', + 'book_stein_modform.py', + 'cmdline.py', + 'combinatorial_hopf_algebras.py', + 'finite_poset.py', + 'functools_partial_src.py', + 'gosper-sum.py', + 'lazy_imports.py', + 'modular_group_cohomology.py', + 'numpy.py', + 'parigp.py', + 'startup.py', + 'symbolic-series.py', + 'sympy.py', + 'test_deprecation.py', + subdir : 'sage/tests' ) extension_data = { From e866cbcf2f16c02d5c8a3d85d349fedfac5ac006 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 19 Feb 2024 04:39:52 +0000 Subject: [PATCH 131/229] update cython files --- .../finite_dimensional_algebras/meson.build | 2 +- src/sage/algebras/fusion_rings/meson.build | 2 +- src/sage/algebras/lie_algebras/meson.build | 2 +- src/sage/algebras/meson.build | 6 +- src/sage/arith/meson.build | 12 +-- src/sage/calculus/meson.build | 12 +-- src/sage/calculus/transforms/meson.build | 4 +- src/sage/categories/examples/meson.build | 2 +- src/sage/categories/meson.build | 14 ++-- src/sage/coding/codecan/meson.build | 4 +- src/sage/coding/meson.build | 6 +- src/sage/combinat/crystals/meson.build | 8 +- src/sage/combinat/designs/meson.build | 10 +-- src/sage/combinat/integer_lists/meson.build | 4 +- src/sage/combinat/meson.build | 22 +++--- src/sage/combinat/posets/meson.build | 6 +- .../rigged_configurations/meson.build | 2 +- src/sage/combinat/root_system/meson.build | 6 +- src/sage/combinat/words/meson.build | 4 +- src/sage/cpython/meson.build | 18 ++--- src/sage/crypto/meson.build | 4 +- src/sage/data_structures/meson.build | 12 +-- .../dynamics/arithmetic_dynamics/meson.build | 2 +- .../dynamics/complex_dynamics/meson.build | 2 +- src/sage/ext/interpreters/meson.build | 12 +-- src/sage/ext/meson.build | 8 +- src/sage/functions/meson.build | 2 +- src/sage/games/meson.build | 2 +- src/sage/geometry/meson.build | 12 +-- .../combinatorial_polyhedron/meson.build | 14 ++-- src/sage/graphs/base/meson.build | 10 +-- src/sage/graphs/generators/meson.build | 2 +- .../graphs/graph_decompositions/meson.build | 14 ++-- src/sage/graphs/meson.build | 44 +++++------ src/sage/groups/matrix_gps/meson.build | 4 +- src/sage/groups/meson.build | 6 +- src/sage/groups/perm_gps/meson.build | 2 +- .../groups/perm_gps/partn_ref/meson.build | 20 ++--- .../groups/perm_gps/partn_ref2/meson.build | 2 +- .../semimonomial_transformations/meson.build | 2 +- src/sage/interacts/meson.build | 2 +- src/sage/interfaces/meson.build | 4 +- src/sage/lfunctions/meson.build | 2 +- src/sage/libs/arb/meson.build | 4 +- src/sage/libs/flint/meson.build | 22 +++--- src/sage/libs/gap/meson.build | 6 +- src/sage/libs/glpk/meson.build | 2 +- src/sage/libs/gmp/meson.build | 2 +- src/sage/libs/gsl/meson.build | 2 +- src/sage/libs/meson.build | 7 +- src/sage/libs/mpmath/meson.build | 8 +- src/sage/libs/pari/meson.build | 16 ++-- src/sage/libs/symmetrica/meson.build | 2 +- src/sage/matrix/meson.build | 64 ++++++++-------- src/sage/matroids/meson.build | 21 +++--- src/sage/misc/meson.build | 64 ++++++++-------- src/sage/modular/arithgroup/meson.build | 4 +- src/sage/modular/meson.build | 2 +- src/sage/modular/modform/meson.build | 4 +- src/sage/modular/modsym/meson.build | 10 +-- src/sage/modular/pollack_stevens/meson.build | 2 +- src/sage/modules/meson.build | 28 +++---- src/sage/modules/with_basis/meson.build | 2 +- src/sage/monoids/meson.build | 2 +- src/sage/numerical/backends/meson.build | 22 +++--- src/sage/numerical/meson.build | 10 +-- src/sage/plot/meson.build | 2 +- src/sage/plot/plot3d/meson.build | 12 +-- src/sage/probability/meson.build | 2 +- src/sage/quadratic_forms/meson.build | 6 +- src/sage/quivers/meson.build | 4 +- src/sage/rings/convert/meson.build | 2 +- src/sage/rings/finite_rings/meson.build | 20 ++--- src/sage/rings/function_field/meson.build | 8 +- src/sage/rings/meson.build | 74 +++++++++---------- src/sage/rings/number_field/meson.build | 10 +-- src/sage/rings/padics/meson.build | 36 ++++----- src/sage/rings/polynomial/meson.build | 44 +++++------ src/sage/rings/polynomial/weil/meson.build | 2 +- src/sage/rings/semirings/meson.build | 2 +- src/sage/sat/solvers/meson.build | 2 +- src/sage/schemes/elliptic_curves/meson.build | 6 +- src/sage/schemes/toric/meson.build | 2 +- src/sage/sets/meson.build | 10 +-- src/sage/stats/distributions/meson.build | 2 +- src/sage/stats/hmm/meson.build | 8 +- src/sage/stats/meson.build | 4 +- src/sage/structure/meson.build | 38 +++++----- src/sage/symbolic/meson.build | 4 +- src/sage/tests/meson.build | 2 +- 90 files changed, 469 insertions(+), 469 deletions(-) diff --git a/src/sage/algebras/finite_dimensional_algebras/meson.build b/src/sage/algebras/finite_dimensional_algebras/meson.build index d821da5c6a4..336dfcd0ba2 100644 --- a/src/sage/algebras/finite_dimensional_algebras/meson.build +++ b/src/sage/algebras/finite_dimensional_algebras/meson.build @@ -8,7 +8,7 @@ py.install_sources( ) extension_data = { - 'finite_dimensional_algebra_element': files('finite_dimensional_algebra_element.pyx'), + 'finite_dimensional_algebra_element' : files('finite_dimensional_algebra_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index 63267a57e4f..4d5ed2d77e5 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -11,7 +11,7 @@ py.install_sources( ) extension_data = { - 'fast_parallel_fusion_ring_braid_repn': files('fast_parallel_fusion_ring_braid_repn.pyx'), + 'fast_parallel_fusion_ring_braid_repn' : files('fast_parallel_fusion_ring_braid_repn.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/algebras/lie_algebras/meson.build b/src/sage/algebras/lie_algebras/meson.build index 3396b638a15..fd46f3acc9a 100644 --- a/src/sage/algebras/lie_algebras/meson.build +++ b/src/sage/algebras/lie_algebras/meson.build @@ -25,7 +25,7 @@ py.install_sources( ) extension_data = { - 'lie_algebra_element': files('lie_algebra_element.pyx'), + 'lie_algebra_element' : files('lie_algebra_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/algebras/meson.build b/src/sage/algebras/meson.build index 99e5902e935..b385fb3c3bc 100644 --- a/src/sage/algebras/meson.build +++ b/src/sage/algebras/meson.build @@ -44,9 +44,9 @@ py.install_sources( ) extension_data = { - 'clifford_algebra_element': files('clifford_algebra_element.pyx'), - 'exterior_algebra_groebner': files('exterior_algebra_groebner.pyx'), - 'octonion_algebra': files('octonion_algebra.pyx'), + 'clifford_algebra_element' : files('clifford_algebra_element.pyx'), + 'exterior_algebra_groebner' : files('exterior_algebra_groebner.pyx'), + 'octonion_algebra' : files('octonion_algebra.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build index bc13ece46cc..27367db6a77 100644 --- a/src/sage/arith/meson.build +++ b/src/sage/arith/meson.build @@ -13,12 +13,12 @@ py.install_sources( ) extension_data = { - 'functions': files('functions.pyx'), - 'multi_modular': files('multi_modular.pyx'), - 'numerical_approx': files('numerical_approx.pyx'), - 'power': files('power.pyx'), - 'rational_reconstruction': files('rational_reconstruction.pyx'), - 'srange': files('srange.pyx'), + 'functions' : files('functions.pyx'), + 'multi_modular' : files('multi_modular.pyx'), + 'numerical_approx' : files('numerical_approx.pyx'), + 'power' : files('power.pyx'), + 'rational_reconstruction' : files('rational_reconstruction.pyx'), + 'srange' : files('srange.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index c7bfa57d390..54b02a8b899 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -14,12 +14,12 @@ py.install_sources( ) extension_data = { - 'integration': files('integration.pyx'), - 'interpolation': files('interpolation.pyx'), - 'interpolators': files('interpolators.pyx'), - 'ode': files('ode.pyx'), - 'riemann': files('riemann.pyx'), - 'var': files('var.pyx'), + 'integration' : files('integration.pyx'), + 'interpolation' : files('interpolation.pyx'), + 'interpolators' : files('interpolators.pyx'), + 'ode' : files('ode.pyx'), + 'riemann' : files('riemann.pyx'), + 'var' : files('var.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/calculus/transforms/meson.build b/src/sage/calculus/transforms/meson.build index c495788eb1f..7b335345733 100644 --- a/src/sage/calculus/transforms/meson.build +++ b/src/sage/calculus/transforms/meson.build @@ -1,8 +1,8 @@ py.install_sources('all.py', 'dft.py', 'dwt.pxd', 'fft.pxd', subdir : 'sage/calculus/transforms') extension_data = { - 'dwt': files('dwt.pyx'), - 'fft': files('fft.pyx'), + 'dwt' : files('dwt.pyx'), + 'fft' : files('fft.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/categories/examples/meson.build b/src/sage/categories/examples/meson.build index fb4389af196..2aab0d6d37b 100644 --- a/src/sage/categories/examples/meson.build +++ b/src/sage/categories/examples/meson.build @@ -35,7 +35,7 @@ py.install_sources( ) extension_data = { - 'semigroups_cython': files('semigroups_cython.pyx'), + 'semigroups_cython' : files('semigroups_cython.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index 7ce68f4b5be..aa022386e35 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -201,13 +201,13 @@ py.install_sources( ) extension_data = { - 'action': files('action.pyx'), - 'category_cy_helper': files('category_cy_helper.pyx'), - 'category_singleton': files('category_singleton.pyx'), - 'coercion_methods': files('coercion_methods.pyx'), - 'functor': files('functor.pyx'), - 'map': files('map.pyx'), - 'morphism': files('morphism.pyx'), + 'action' : files('action.pyx'), + 'category_cy_helper' : files('category_cy_helper.pyx'), + 'category_singleton' : files('category_singleton.pyx'), + 'coercion_methods' : files('coercion_methods.pyx'), + 'functor' : files('functor.pyx'), + 'map' : files('map.pyx'), + 'morphism' : files('morphism.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/coding/codecan/meson.build b/src/sage/coding/codecan/meson.build index 267b315a6a7..fb9a14fa9bc 100644 --- a/src/sage/coding/codecan/meson.build +++ b/src/sage/coding/codecan/meson.build @@ -1,8 +1,8 @@ py.install_sources('all.py', 'codecan.pxd', subdir : 'sage/coding/codecan') extension_data = { - 'autgroup_can_label': files('autgroup_can_label.pyx'), - 'codecan': files('codecan.pyx'), + 'autgroup_can_label' : files('autgroup_can_label.pyx'), + 'codecan' : files('codecan.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/coding/meson.build b/src/sage/coding/meson.build index 811f783d8b2..1a219ccec07 100644 --- a/src/sage/coding/meson.build +++ b/src/sage/coding/meson.build @@ -38,9 +38,9 @@ py.install_sources( ) extension_data = { - 'ag_code_decoders': files('ag_code_decoders.pyx'), - 'binary_code': files('binary_code.pyx'), - 'kasami_codes': files('kasami_codes.pyx'), + 'ag_code_decoders' : files('ag_code_decoders.pyx'), + 'binary_code' : files('binary_code.pyx'), + 'kasami_codes' : files('kasami_codes.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/crystals/meson.build b/src/sage/combinat/crystals/meson.build index 389ba255d05..9f57d67b1a8 100644 --- a/src/sage/combinat/crystals/meson.build +++ b/src/sage/combinat/crystals/meson.build @@ -35,10 +35,10 @@ py.install_sources( ) extension_data = { - 'letters': files('letters.pyx'), - 'pbw_datum': files('pbw_datum.pyx'), - 'spins': files('spins.pyx'), - 'tensor_product_element': files('tensor_product_element.pyx'), + 'letters' : files('letters.pyx'), + 'pbw_datum' : files('pbw_datum.pyx'), + 'spins' : files('spins.pyx'), + 'tensor_product_element' : files('tensor_product_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build index d3ebc844d69..a12d7bca407 100644 --- a/src/sage/combinat/designs/meson.build +++ b/src/sage/combinat/designs/meson.build @@ -23,11 +23,11 @@ py.install_sources( ) extension_data = { - 'designs_pyx': files('designs_pyx.pyx'), - 'evenly_distributed_sets': files('evenly_distributed_sets.pyx'), - 'gen_quadrangles_with_spread': files('gen_quadrangles_with_spread.pyx'), - 'orthogonal_arrays_find_recursive': files('orthogonal_arrays_find_recursive.pyx'), - 'subhypergraph_search': files('subhypergraph_search.pyx'), + 'designs_pyx' : files('designs_pyx.pyx'), + 'evenly_distributed_sets' : files('evenly_distributed_sets.pyx'), + 'gen_quadrangles_with_spread' : files('gen_quadrangles_with_spread.pyx'), + 'orthogonal_arrays_find_recursive' : files('orthogonal_arrays_find_recursive.pyx'), + 'subhypergraph_search' : files('subhypergraph_search.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/integer_lists/meson.build b/src/sage/combinat/integer_lists/meson.build index 35aba6e8937..0ab41fd33e5 100644 --- a/src/sage/combinat/integer_lists/meson.build +++ b/src/sage/combinat/integer_lists/meson.build @@ -1,8 +1,8 @@ py.install_sources('__init__.py', 'lists.py', 'nn.py', subdir : 'sage/combinat/integer_lists') extension_data = { - 'base': files('base.pyx'), - 'invlex': files('invlex.pyx'), + 'base' : files('base.pyx'), + 'invlex' : files('invlex.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/meson.build b/src/sage/combinat/meson.build index 4bfd6aab65d..24a7adcd9ef 100644 --- a/src/sage/combinat/meson.build +++ b/src/sage/combinat/meson.build @@ -127,17 +127,17 @@ py.install_sources( ) extension_data = { - 'combinat_cython': files('combinat_cython.pyx'), - 'debruijn_sequence': files('debruijn_sequence.pyx'), - 'degree_sequences': files('degree_sequences.pyx'), - 'enumeration_mod_permgroup': files('enumeration_mod_permgroup.pyx'), - 'expnums': files('expnums.pyx'), - 'fast_vector_partitions': files('fast_vector_partitions.pyx'), - 'partitions': files('partitions.pyx'), - 'permutation_cython': files('permutation_cython.pyx'), - 'q_bernoulli': files('q_bernoulli.pyx'), - 'set_partition_iterator': files('set_partition_iterator.pyx'), - 'subword_complex_c': files('subword_complex_c.pyx'), + 'combinat_cython' : files('combinat_cython.pyx'), + 'debruijn_sequence' : files('debruijn_sequence.pyx'), + 'degree_sequences' : files('degree_sequences.pyx'), + 'enumeration_mod_permgroup' : files('enumeration_mod_permgroup.pyx'), + 'expnums' : files('expnums.pyx'), + 'fast_vector_partitions' : files('fast_vector_partitions.pyx'), + 'partitions' : files('partitions.pyx'), + 'permutation_cython' : files('permutation_cython.pyx'), + 'q_bernoulli' : files('q_bernoulli.pyx'), + 'set_partition_iterator' : files('set_partition_iterator.pyx'), + 'subword_complex_c' : files('subword_complex_c.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/posets/meson.build b/src/sage/combinat/posets/meson.build index bf383598438..bc85ead8819 100644 --- a/src/sage/combinat/posets/meson.build +++ b/src/sage/combinat/posets/meson.build @@ -16,9 +16,9 @@ py.install_sources( ) extension_data = { - 'hasse_cython': files('hasse_cython.pyx'), - 'hasse_cython_flint': files('hasse_cython_flint.pyx'), - 'linear_extension_iterator': files('linear_extension_iterator.pyx'), + 'hasse_cython' : files('hasse_cython.pyx'), + 'hasse_cython_flint' : files('hasse_cython_flint.pyx'), + 'linear_extension_iterator' : files('linear_extension_iterator.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/rigged_configurations/meson.build b/src/sage/combinat/rigged_configurations/meson.build index f71215e3eae..29fb46bf731 100644 --- a/src/sage/combinat/rigged_configurations/meson.build +++ b/src/sage/combinat/rigged_configurations/meson.build @@ -25,7 +25,7 @@ py.install_sources( ) extension_data = { - 'rigged_partition': files('rigged_partition.pyx'), + 'rigged_partition' : files('rigged_partition.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/root_system/meson.build b/src/sage/combinat/root_system/meson.build index c5defca25ae..298c955be71 100644 --- a/src/sage/combinat/root_system/meson.build +++ b/src/sage/combinat/root_system/meson.build @@ -57,9 +57,9 @@ py.install_sources( ) extension_data = { - 'braid_orbit': files('braid_orbit.pyx'), - 'reflection_group_c': files('reflection_group_c.pyx'), - 'reflection_group_element': files('reflection_group_element.pyx'), + 'braid_orbit' : files('braid_orbit.pyx'), + 'reflection_group_c' : files('reflection_group_c.pyx'), + 'reflection_group_element' : files('reflection_group_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/combinat/words/meson.build b/src/sage/combinat/words/meson.build index 76a04423785..a396134f586 100644 --- a/src/sage/combinat/words/meson.build +++ b/src/sage/combinat/words/meson.build @@ -19,8 +19,8 @@ py.install_sources( ) extension_data = { - 'word_char': files('word_char.pyx'), - 'word_datatypes': files('word_datatypes.pyx'), + 'word_char' : files('word_char.pyx'), + 'word_datatypes' : files('word_datatypes.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build index 4081613955a..88628fdbc35 100644 --- a/src/sage/cpython/meson.build +++ b/src/sage/cpython/meson.build @@ -20,15 +20,15 @@ py.install_sources( ) extension_data = { - 'atexit': files('atexit.pyx'), - 'builtin_types': files('builtin_types.pyx'), - 'cython_metaclass': files('cython_metaclass.pyx'), - 'debug': files('debug.pyx'), - 'dict_del_by_value': files('dict_del_by_value.pyx'), - 'getattr': files('getattr.pyx'), - 'string': files('string.pyx'), - 'type': files('type.pyx'), - 'wrapperdescr': files('wrapperdescr.pyx'), + 'atexit' : files('atexit.pyx'), + 'builtin_types' : files('builtin_types.pyx'), + 'cython_metaclass' : files('cython_metaclass.pyx'), + 'debug' : files('debug.pyx'), + 'dict_del_by_value' : files('dict_del_by_value.pyx'), + 'getattr' : files('getattr.pyx'), + 'string' : files('string.pyx'), + 'type' : files('type.pyx'), + 'wrapperdescr' : files('wrapperdescr.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/crypto/meson.build b/src/sage/crypto/meson.build index 5a40424281b..c9c178b6811 100644 --- a/src/sage/crypto/meson.build +++ b/src/sage/crypto/meson.build @@ -16,8 +16,8 @@ py.install_sources( ) extension_data = { - 'boolean_function': files('boolean_function.pyx'), - 'sbox': files('sbox.pyx'), + 'boolean_function' : files('boolean_function.pyx'), + 'sbox' : files('sbox.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index dbbf1476444..71cbfcc76cd 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -16,12 +16,12 @@ py.install_sources( ) extension_data = { - 'binary_search': files('binary_search.pyx'), - 'bitset': files('bitset.pyx'), - 'bitset_base': files('bitset_base.pyx'), - 'blas_dict': files('blas_dict.pyx'), - 'bounded_integer_sequences': files('bounded_integer_sequences.pyx'), - 'list_of_pairs': files('list_of_pairs.pyx'), + 'binary_search' : files('binary_search.pyx'), + 'bitset' : files('bitset.pyx'), + 'bitset_base' : files('bitset_base.pyx'), + 'blas_dict' : files('blas_dict.pyx'), + 'bounded_integer_sequences' : files('bounded_integer_sequences.pyx'), + 'list_of_pairs' : files('list_of_pairs.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/dynamics/arithmetic_dynamics/meson.build b/src/sage/dynamics/arithmetic_dynamics/meson.build index 1bfb5e38d9a..7a893df2186 100644 --- a/src/sage/dynamics/arithmetic_dynamics/meson.build +++ b/src/sage/dynamics/arithmetic_dynamics/meson.build @@ -13,7 +13,7 @@ py.install_sources( ) extension_data = { - 'projective_ds_helper': files('projective_ds_helper.pyx'), + 'projective_ds_helper' : files('projective_ds_helper.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/dynamics/complex_dynamics/meson.build b/src/sage/dynamics/complex_dynamics/meson.build index 5d69ca71714..426d18c2224 100644 --- a/src/sage/dynamics/complex_dynamics/meson.build +++ b/src/sage/dynamics/complex_dynamics/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'mandel_julia.py', subdir : 'sage/dynamics/complex_dynamics') extension_data = { - 'mandel_julia_helper': files('mandel_julia_helper.pyx'), + 'mandel_julia_helper' : files('mandel_julia_helper.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index 22f787061b8..3dc6a9e3064 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -10,12 +10,12 @@ py.install_sources( ) extension_data = { - 'wrapper_cc': files('wrapper_cc.pyx'), - 'wrapper_cdf': files('wrapper_cdf.pyx'), - 'wrapper_el': files('wrapper_el.pyx'), - 'wrapper_py': files('wrapper_py.pyx'), - 'wrapper_rdf': files('wrapper_rdf.pyx'), - 'wrapper_rr': files('wrapper_rr.pyx'), + 'wrapper_cc' : files('wrapper_cc.pyx'), + 'wrapper_cdf' : files('wrapper_cdf.pyx'), + 'wrapper_el' : files('wrapper_el.pyx'), + 'wrapper_py' : files('wrapper_py.pyx'), + 'wrapper_rdf' : files('wrapper_rdf.pyx'), + 'wrapper_rr' : files('wrapper_rr.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index fdc4fe44813..fdeecdc9318 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -12,10 +12,10 @@ py.install_sources( ) extension_data = { - 'fast_callable': files('fast_callable.pyx'), - 'fast_eval': files('fast_eval.pyx'), - 'memory': files('memory.pyx'), - 'memory_allocator': files('memory_allocator.pyx'), + 'fast_callable' : files('fast_callable.pyx'), + 'fast_eval' : files('fast_eval.pyx'), + 'memory' : files('memory.pyx'), + 'memory_allocator' : files('memory_allocator.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/functions/meson.build b/src/sage/functions/meson.build index e1f77eb331e..c82cbadc680 100644 --- a/src/sage/functions/meson.build +++ b/src/sage/functions/meson.build @@ -23,7 +23,7 @@ py.install_sources( ) extension_data = { - 'prime_pi': files('prime_pi.pyx'), + 'prime_pi' : files('prime_pi.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/games/meson.build b/src/sage/games/meson.build index 6bc0e802a68..bc7d2deeef4 100644 --- a/src/sage/games/meson.build +++ b/src/sage/games/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'hexad.py', 'quantumino.py', 'sudoku.py', subdir : 'sage/games') extension_data = { - 'sudoku_backtrack': files('sudoku_backtrack.pyx'), + 'sudoku_backtrack' : files('sudoku_backtrack.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/geometry/meson.build b/src/sage/geometry/meson.build index c4a14f0d51e..224117d14d2 100644 --- a/src/sage/geometry/meson.build +++ b/src/sage/geometry/meson.build @@ -22,12 +22,12 @@ py.install_sources( ) extension_data = { - 'abc': files('abc.pyx'), - 'integral_points_generic_dense': files('integral_points_generic_dense.pyx'), - 'integral_points_integer_dense': files('integral_points_integer_dense.pyx'), - 'palp_normal_form': files('palp_normal_form.pyx'), - 'point_collection': files('point_collection.pyx'), - 'toric_lattice_element': files('toric_lattice_element.pyx'), + 'abc' : files('abc.pyx'), + 'integral_points_generic_dense' : files('integral_points_generic_dense.pyx'), + 'integral_points_integer_dense' : files('integral_points_integer_dense.pyx'), + 'palp_normal_form' : files('palp_normal_form.pyx'), + 'point_collection' : files('point_collection.pyx'), + 'toric_lattice_element' : files('toric_lattice_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build index 700d92bf09e..34c548ffcbd 100644 --- a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build @@ -1,13 +1,13 @@ py.install_sources('all.py', subdir : 'sage/geometry/polyhedron/combinatorial_polyhedron') extension_data = { - 'base': files('base.pyx'), - 'combinatorial_face': files('combinatorial_face.pyx'), - 'conversions': files('conversions.pyx'), - 'face_iterator': files('face_iterator.pyx'), - 'face_list_data_structure': files('face_list_data_structure.pyx'), - 'list_of_faces': files('list_of_faces.pyx'), - 'polyhedron_face_lattice': files('polyhedron_face_lattice.pyx'), + 'base' : files('base.pyx'), + 'combinatorial_face' : files('combinatorial_face.pyx'), + 'conversions' : files('conversions.pyx'), + 'face_iterator' : files('face_iterator.pyx'), + 'face_list_data_structure' : files('face_list_data_structure.pyx'), + 'list_of_faces' : files('list_of_faces.pyx'), + 'polyhedron_face_lattice' : files('polyhedron_face_lattice.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index ef431a0f7b6..d665f801b86 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -13,11 +13,11 @@ py.install_sources( ) extension_data = { - 'dense_graph': files('dense_graph.pyx'), - 'graph_backends': files('graph_backends.pyx'), - 'sparse_graph': files('sparse_graph.pyx'), - 'static_dense_graph': files('static_dense_graph.pyx'), - 'static_sparse_backend': files('static_sparse_backend.pyx'), + 'dense_graph' : files('dense_graph.pyx'), + 'graph_backends' : files('graph_backends.pyx'), + 'sparse_graph' : files('sparse_graph.pyx'), + 'static_dense_graph' : files('static_dense_graph.pyx'), + 'static_sparse_backend' : files('static_sparse_backend.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/graphs/generators/meson.build b/src/sage/graphs/generators/meson.build index be0879c9063..a52efc9c474 100644 --- a/src/sage/graphs/generators/meson.build +++ b/src/sage/graphs/generators/meson.build @@ -14,7 +14,7 @@ py.install_sources( ) extension_data = { - 'distance_regular': files('distance_regular.pyx'), + 'distance_regular' : files('distance_regular.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 19b2786578e..2687e439ed1 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -18,13 +18,13 @@ py.install_sources( ) extension_data = { - 'bandwidth': files('bandwidth.pyx'), - 'cutwidth': files('cutwidth.pyx'), - 'fast_digraph': files('fast_digraph.pyx'), - 'graph_products': files('graph_products.pyx'), - 'rankwidth': files('rankwidth.pyx'), - 'tree_decomposition': files('tree_decomposition.pyx'), - 'vertex_separation': files('vertex_separation.pyx'), + 'bandwidth' : files('bandwidth.pyx'), + 'cutwidth' : files('cutwidth.pyx'), + 'fast_digraph' : files('fast_digraph.pyx'), + 'graph_products' : files('graph_products.pyx'), + 'rankwidth' : files('rankwidth.pyx'), + 'tree_decomposition' : files('tree_decomposition.pyx'), + 'vertex_separation' : files('vertex_separation.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index a992796e777..4eeff52a511 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -50,28 +50,28 @@ py.install_sources( ) extension_data = { - 'asteroidal_triples': files('asteroidal_triples.pyx'), - 'centrality': files('centrality.pyx'), - 'chrompoly': files('chrompoly.pyx'), - 'cliquer': files('cliquer.pyx'), - 'comparability': files('comparability.pyx'), - 'connectivity': files('connectivity.pyx'), - 'convexity_properties': files('convexity_properties.pyx'), - 'distances_all_pairs': files('distances_all_pairs.pyx'), - 'generic_graph_pyx': files('generic_graph_pyx.pyx'), - 'genus': files('genus.pyx'), - 'graph_generators_pyx': files('graph_generators_pyx.pyx'), - 'hyperbolicity': files('hyperbolicity.pyx'), - 'independent_sets': files('independent_sets.pyx'), - 'isoperimetric_inequalities': files('isoperimetric_inequalities.pyx'), - 'line_graph': files('line_graph.pyx'), - 'matchpoly': files('matchpoly.pyx'), - 'planarity': files('planarity.pyx'), - 'spanning_tree': files('spanning_tree.pyx'), - 'strongly_regular_db': files('strongly_regular_db.pyx'), - 'trees': files('trees.pyx'), - 'views': files('views.pyx'), - 'weakly_chordal': files('weakly_chordal.pyx'), + 'asteroidal_triples' : files('asteroidal_triples.pyx'), + 'centrality' : files('centrality.pyx'), + 'chrompoly' : files('chrompoly.pyx'), + 'cliquer' : files('cliquer.pyx'), + 'comparability' : files('comparability.pyx'), + 'connectivity' : files('connectivity.pyx'), + 'convexity_properties' : files('convexity_properties.pyx'), + 'distances_all_pairs' : files('distances_all_pairs.pyx'), + 'generic_graph_pyx' : files('generic_graph_pyx.pyx'), + 'genus' : files('genus.pyx'), + 'graph_generators_pyx' : files('graph_generators_pyx.pyx'), + 'hyperbolicity' : files('hyperbolicity.pyx'), + 'independent_sets' : files('independent_sets.pyx'), + 'isoperimetric_inequalities' : files('isoperimetric_inequalities.pyx'), + 'line_graph' : files('line_graph.pyx'), + 'matchpoly' : files('matchpoly.pyx'), + 'planarity' : files('planarity.pyx'), + 'spanning_tree' : files('spanning_tree.pyx'), + 'strongly_regular_db' : files('strongly_regular_db.pyx'), + 'trees' : files('trees.pyx'), + 'views' : files('views.pyx'), + 'weakly_chordal' : files('weakly_chordal.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/groups/matrix_gps/meson.build b/src/sage/groups/matrix_gps/meson.build index de499c053da..c8497f50a19 100644 --- a/src/sage/groups/matrix_gps/meson.build +++ b/src/sage/groups/matrix_gps/meson.build @@ -26,8 +26,8 @@ py.install_sources( ) extension_data = { - 'group_element': files('group_element.pyx'), - 'group_element_gap': files('group_element_gap.pyx'), + 'group_element' : files('group_element.pyx'), + 'group_element_gap' : files('group_element_gap.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/groups/meson.build b/src/sage/groups/meson.build index f49474c2860..0584d878813 100644 --- a/src/sage/groups/meson.build +++ b/src/sage/groups/meson.build @@ -31,9 +31,9 @@ py.install_sources( ) extension_data = { - 'group': files('group.pyx'), - 'libgap_wrapper': files('libgap_wrapper.pyx'), - 'old': files('old.pyx'), + 'group' : files('group.pyx'), + 'libgap_wrapper' : files('libgap_wrapper.pyx'), + 'old' : files('old.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/groups/perm_gps/meson.build b/src/sage/groups/perm_gps/meson.build index eee96dacab0..2c6fca471a9 100644 --- a/src/sage/groups/perm_gps/meson.build +++ b/src/sage/groups/perm_gps/meson.build @@ -11,7 +11,7 @@ py.install_sources( ) extension_data = { - 'permgroup_element': files('permgroup_element.pyx'), + 'permgroup_element' : files('permgroup_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/groups/perm_gps/partn_ref/meson.build b/src/sage/groups/perm_gps/partn_ref/meson.build index 347d4b11cb3..dc4bc64825e 100644 --- a/src/sage/groups/perm_gps/partn_ref/meson.build +++ b/src/sage/groups/perm_gps/partn_ref/meson.build @@ -1,16 +1,16 @@ py.install_sources('all.py', subdir : 'sage/groups/perm_gps/partn_ref') extension_data = { - 'automorphism_group_canonical_label': files('automorphism_group_canonical_label.pyx'), - 'canonical_augmentation': files('canonical_augmentation.pyx'), - 'data_structures': files('data_structures.pyx'), - 'double_coset': files('double_coset.pyx'), - 'refinement_binary': files('refinement_binary.pyx'), - 'refinement_graphs': files('refinement_graphs.pyx'), - 'refinement_lists': files('refinement_lists.pyx'), - 'refinement_matrices': files('refinement_matrices.pyx'), - 'refinement_python': files('refinement_python.pyx'), - 'refinement_sets': files('refinement_sets.pyx'), + 'automorphism_group_canonical_label' : files('automorphism_group_canonical_label.pyx'), + 'canonical_augmentation' : files('canonical_augmentation.pyx'), + 'data_structures' : files('data_structures.pyx'), + 'double_coset' : files('double_coset.pyx'), + 'refinement_binary' : files('refinement_binary.pyx'), + 'refinement_graphs' : files('refinement_graphs.pyx'), + 'refinement_lists' : files('refinement_lists.pyx'), + 'refinement_matrices' : files('refinement_matrices.pyx'), + 'refinement_python' : files('refinement_python.pyx'), + 'refinement_sets' : files('refinement_sets.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/groups/perm_gps/partn_ref2/meson.build b/src/sage/groups/perm_gps/partn_ref2/meson.build index d25038bb14d..6f066ad2f4a 100644 --- a/src/sage/groups/perm_gps/partn_ref2/meson.build +++ b/src/sage/groups/perm_gps/partn_ref2/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', subdir : 'sage/groups/perm_gps/partn_ref2') extension_data = { - 'refinement_generic': files('refinement_generic.pyx'), + 'refinement_generic' : files('refinement_generic.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/groups/semimonomial_transformations/meson.build b/src/sage/groups/semimonomial_transformations/meson.build index 00b94c7bc38..88b4e6d20c2 100644 --- a/src/sage/groups/semimonomial_transformations/meson.build +++ b/src/sage/groups/semimonomial_transformations/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'semimonomial_transformation_group.py', subdir : 'sage/groups/semimonomial_transformations') extension_data = { - 'semimonomial_transformation': files('semimonomial_transformation.pyx'), + 'semimonomial_transformation' : files('semimonomial_transformation.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/interacts/meson.build b/src/sage/interacts/meson.build index 56c1eeb0622..5cefd7dedf8 100644 --- a/src/sage/interacts/meson.build +++ b/src/sage/interacts/meson.build @@ -10,7 +10,7 @@ py.install_sources( ) extension_data = { - 'library_cython': files('library_cython.pyx'), + 'library_cython' : files('library_cython.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build index f7086657ce6..79d1f3844c8 100644 --- a/src/sage/interfaces/meson.build +++ b/src/sage/interfaces/meson.build @@ -62,8 +62,8 @@ py.install_sources( ) extension_data = { - 'process': files('process.pyx'), - 'sagespawn': files('sagespawn.pyx'), + 'process' : files('process.pyx'), + 'sagespawn' : files('sagespawn.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/lfunctions/meson.build b/src/sage/lfunctions/meson.build index 024507e1043..5252b506e14 100644 --- a/src/sage/lfunctions/meson.build +++ b/src/sage/lfunctions/meson.build @@ -8,7 +8,7 @@ py.install_sources( ) extension_data = { - 'zero_sums': files('zero_sums.pyx'), + 'zero_sums' : files('zero_sums.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index d8f90891b1d..36da5a1cc6c 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -19,8 +19,8 @@ py.install_sources( ) extension_data = { - 'arb_version': files('arb_version.pyx'), - 'arith': files('arith.pyx'), + 'arb_version' : files('arb_version.pyx'), + 'arith' : files('arith.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index 63efeb48959..f94394218ed 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -32,17 +32,17 @@ py.install_sources( ) extension_data = { - 'arith': files('arith.pyx'), - 'arith_sage': files('arith_sage.pyx'), - 'flint_sage': files('flint_sage.pyx'), - 'fmpq_poly_sage': files('fmpq_poly_sage.pyx'), - 'fmpz_factor_sage': files('fmpz_factor_sage.pyx'), - 'fmpz_poly': files('fmpz_poly.pyx'), - 'fmpz_poly_sage': files('fmpz_poly_sage.pyx'), - 'qsieve': files('qsieve.pyx'), - 'qsieve_sage': files('qsieve_sage.pyx'), - 'ulong_extras': files('ulong_extras.pyx'), - 'ulong_extras_sage': files('ulong_extras_sage.pyx'), + 'arith' : files('arith.pyx'), + 'arith_sage' : files('arith_sage.pyx'), + 'flint_sage' : files('flint_sage.pyx'), + 'fmpq_poly_sage' : files('fmpq_poly_sage.pyx'), + 'fmpz_factor_sage' : files('fmpz_factor_sage.pyx'), + 'fmpz_poly' : files('fmpz_poly.pyx'), + 'fmpz_poly_sage' : files('fmpz_poly_sage.pyx'), + 'qsieve' : files('qsieve.pyx'), + 'qsieve_sage' : files('qsieve_sage.pyx'), + 'ulong_extras' : files('ulong_extras.pyx'), + 'ulong_extras_sage' : files('ulong_extras_sage.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index df6ccfee84b..e992c11a8a1 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -17,9 +17,9 @@ py.install_sources( ) extension_data = { - 'element': files('element.pyx'), - 'libgap': files('libgap.pyx'), - 'util': files('util.pyx'), + 'element' : files('element.pyx'), + 'libgap' : files('libgap.pyx'), + 'util' : files('util.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build index 32eaa0bb9a4..d3c321906ef 100644 --- a/src/sage/libs/glpk/meson.build +++ b/src/sage/libs/glpk/meson.build @@ -9,7 +9,7 @@ py.install_sources( ) extension_data = { - 'error': files('error.pyx'), + 'error' : files('error.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 7cb927e811a..08809fa27a4 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -15,7 +15,7 @@ py.install_sources( ) extension_data = { - 'pylong': files('pylong.pyx'), + 'pylong' : files('pylong.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/gsl/meson.build b/src/sage/libs/gsl/meson.build index 42f05e23a6a..104f7d8058c 100644 --- a/src/sage/libs/gsl/meson.build +++ b/src/sage/libs/gsl/meson.build @@ -68,7 +68,7 @@ py.install_sources( ) extension_data = { - 'array': files('array.pyx'), + 'array' : files('array.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 924f8fa4f11..55f6e6caef5 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -23,10 +23,9 @@ py.install_sources( ) extension_data = { - 'ecl': files('ecl.pyx'), - 'homfly': files('homfly.pyx'), - 'libecm': files('libecm.pyx'), - #'meataxe': files('meataxe.pyx'), # not yet on conda - need meataxe + 'ecl' : files('ecl.pyx'), + 'homfly' : files('homfly.pyx'), + 'libecm' : files('libecm.pyx') } dependencies = [py_dep, braiding, cysignals, ecl, ecm, gc, gmp, homfly, mtx, sirocco] diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build index 394a4da4357..c656d5be110 100644 --- a/src/sage/libs/mpmath/meson.build +++ b/src/sage/libs/mpmath/meson.build @@ -1,10 +1,10 @@ py.install_sources('__init__.py', 'all.py', 'utils.pxd', subdir : 'sage/libs/mpmath') extension_data = { - 'ext_impl': files('ext_impl.pyx'), - 'ext_libmp': files('ext_libmp.pyx'), - 'ext_main': files('ext_main.pyx'), - 'utils': files('utils.pyx'), + 'ext_impl' : files('ext_impl.pyx'), + 'ext_libmp' : files('ext_libmp.pyx'), + 'ext_main' : files('ext_main.pyx'), + 'utils' : files('utils.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 8e3236af9bd..1dee2a1795c 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -13,14 +13,14 @@ py.install_sources( ) extension_data = { - 'convert_flint': files('convert_flint.pyx'), - 'convert_gmp': files('convert_gmp.pyx'), - 'convert_sage': files('convert_sage.pyx'), - 'convert_sage_complex_double': files('convert_sage_complex_double.pyx'), - 'convert_sage_matrix': files('convert_sage_matrix.pyx'), - 'convert_sage_real_double': files('convert_sage_real_double.pyx'), - 'convert_sage_real_mpfr': files('convert_sage_real_mpfr.pyx'), - 'misc': files('misc.pyx'), + 'convert_flint' : files('convert_flint.pyx'), + 'convert_gmp' : files('convert_gmp.pyx'), + 'convert_sage' : files('convert_sage.pyx'), + 'convert_sage_complex_double' : files('convert_sage_complex_double.pyx'), + 'convert_sage_matrix' : files('convert_sage_matrix.pyx'), + 'convert_sage_real_double' : files('convert_sage_real_double.pyx'), + 'convert_sage_real_mpfr' : files('convert_sage_real_mpfr.pyx'), + 'misc' : files('misc.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/libs/symmetrica/meson.build b/src/sage/libs/symmetrica/meson.build index 36fa3b99f30..7ad39e95ad2 100644 --- a/src/sage/libs/symmetrica/meson.build +++ b/src/sage/libs/symmetrica/meson.build @@ -8,7 +8,7 @@ symmetrica = declare_dependency( py.install_sources('__init__.py', 'all.py', subdir : 'sage/libs/symmetrica') extension_data = { - 'symmetrica': files('symmetrica.pyx'), + 'symmetrica' : files('symmetrica.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index a9255459faa..a6e1e0c902e 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -31,38 +31,38 @@ py.install_sources( ) extension_data = { - 'action': files('action.pyx'), - 'args': files('args.pyx'), - 'change_ring': files('change_ring.pyx'), - 'constructor': files('constructor.pyx'), - 'echelon_matrix': files('echelon_matrix.pyx'), - 'matrix0': files('matrix0.pyx'), - 'matrix1': files('matrix1.pyx'), - 'matrix2': files('matrix2.pyx'), - 'matrix_cdv': files('matrix_cdv.pyx'), - 'matrix_complex_ball_dense': files('matrix_complex_ball_dense.pyx'), - 'matrix_complex_double_dense': files('matrix_complex_double_dense.pyx'), - 'matrix_dense': files('matrix_dense.pyx'), - 'matrix_double_dense': files('matrix_double_dense.pyx'), - 'matrix_double_sparse': files('matrix_double_sparse.pyx'), - 'matrix_gap': files('matrix_gap.pyx'), - 'matrix_generic_dense': files('matrix_generic_dense.pyx'), - 'matrix_generic_sparse': files('matrix_generic_sparse.pyx'), - # 'matrix_gfpn_dense': files('matrix_gfpn_dense.pyx'), # not yet on conda - 'matrix_laurent_mpolynomial_dense': files('matrix_laurent_mpolynomial_dense.pyx'), - 'matrix_numpy_dense': files('matrix_numpy_dense.pyx'), - 'matrix_numpy_integer_dense': files('matrix_numpy_integer_dense.pyx'), - 'matrix_polynomial_dense': files('matrix_polynomial_dense.pyx'), - 'matrix_rational_sparse': files('matrix_rational_sparse.pyx'), - 'matrix_real_double_dense': files('matrix_real_double_dense.pyx'), - 'matrix_sparse': files('matrix_sparse.pyx'), - 'matrix_symbolic_dense': files('matrix_symbolic_dense.pyx'), - 'matrix_symbolic_sparse': files('matrix_symbolic_sparse.pyx'), - 'matrix_window': files('matrix_window.pyx'), - 'misc': files('misc.pyx'), - 'misc_flint': files('misc_flint.pyx'), - 'misc_mpfr': files('misc_mpfr.pyx'), - 'strassen': files('strassen.pyx'), + 'action' : files('action.pyx'), + 'args' : files('args.pyx'), + 'change_ring' : files('change_ring.pyx'), + 'constructor' : files('constructor.pyx'), + 'echelon_matrix' : files('echelon_matrix.pyx'), + 'matrix0' : files('matrix0.pyx'), + 'matrix1' : files('matrix1.pyx'), + 'matrix2' : files('matrix2.pyx'), + 'matrix_cdv' : files('matrix_cdv.pyx'), + 'matrix_complex_ball_dense' : files('matrix_complex_ball_dense.pyx'), + 'matrix_complex_double_dense' : files('matrix_complex_double_dense.pyx'), + 'matrix_dense' : files('matrix_dense.pyx'), + 'matrix_double_dense' : files('matrix_double_dense.pyx'), + 'matrix_double_sparse' : files('matrix_double_sparse.pyx'), + 'matrix_gap' : files('matrix_gap.pyx'), + 'matrix_generic_dense' : files('matrix_generic_dense.pyx'), + 'matrix_generic_sparse' : files('matrix_generic_sparse.pyx'), + 'matrix_gfpn_dense' : files('matrix_gfpn_dense.pyx'), + 'matrix_laurent_mpolynomial_dense' : files('matrix_laurent_mpolynomial_dense.pyx'), + 'matrix_numpy_dense' : files('matrix_numpy_dense.pyx'), + 'matrix_numpy_integer_dense' : files('matrix_numpy_integer_dense.pyx'), + 'matrix_polynomial_dense' : files('matrix_polynomial_dense.pyx'), + 'matrix_rational_sparse' : files('matrix_rational_sparse.pyx'), + 'matrix_real_double_dense' : files('matrix_real_double_dense.pyx'), + 'matrix_sparse' : files('matrix_sparse.pyx'), + 'matrix_symbolic_dense' : files('matrix_symbolic_dense.pyx'), + 'matrix_symbolic_sparse' : files('matrix_symbolic_sparse.pyx'), + 'matrix_window' : files('matrix_window.pyx'), + 'misc' : files('misc.pyx'), + 'misc_flint' : files('misc_flint.pyx'), + 'misc_mpfr' : files('misc_mpfr.pyx'), + 'strassen' : files('strassen.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/matroids/meson.build b/src/sage/matroids/meson.build index b8e706a9414..6c0976521ee 100644 --- a/src/sage/matroids/meson.build +++ b/src/sage/matroids/meson.build @@ -17,16 +17,17 @@ py.install_sources( ) extension_data = { - 'basis_exchange_matroid': files('basis_exchange_matroid.pyx'), - 'basis_matroid': files('basis_matroid.pyx'), - 'circuit_closures_matroid': files('circuit_closures_matroid.pyx'), - 'extension': files('extension.pyx'), - 'lean_matrix': files('lean_matrix.pyx'), - 'linear_matroid': files('linear_matroid.pyx'), - 'matroid': files('matroid.pyx'), - 'set_system': files('set_system.pyx'), - 'union_matroid': files('union_matroid.pyx'), - 'unpickling': files('unpickling.pyx'), + 'basis_exchange_matroid' : files('basis_exchange_matroid.pyx'), + 'basis_matroid' : files('basis_matroid.pyx'), + 'circuit_closures_matroid' : files('circuit_closures_matroid.pyx'), + 'circuits_matroid' : files('circuits_matroid.pyx'), + 'extension' : files('extension.pyx'), + 'lean_matrix' : files('lean_matrix.pyx'), + 'linear_matroid' : files('linear_matroid.pyx'), + 'matroid' : files('matroid.pyx'), + 'set_system' : files('set_system.pyx'), + 'union_matroid' : files('union_matroid.pyx'), + 'unpickling' : files('unpickling.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index eccd8be3347..677195baf45 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -91,38 +91,38 @@ py.install_sources( ) extension_data = { - 'allocator': files('allocator.pyx'), - 'binary_tree': files('binary_tree.pyx'), - 'c3': files('c3.pyx'), - 'c3_controlled': files('c3_controlled.pyx'), - 'cachefunc': files('cachefunc.pyx'), - 'callable_dict': files('callable_dict.pyx'), - 'citation': files('citation.pyx'), - 'classcall_metaclass': files('classcall_metaclass.pyx'), - 'constant_function': files('constant_function.pyx'), - 'derivative': files('derivative.pyx'), - 'fast_methods': files('fast_methods.pyx'), - 'fpickle': files('fpickle.pyx'), - 'function_mangling': files('function_mangling.pyx'), - 'inherit_comparison': files('inherit_comparison.pyx'), - 'instancedoc': files('instancedoc.pyx'), - 'lazy_attribute': files('lazy_attribute.pyx'), - 'lazy_import': files('lazy_import.pyx'), - 'lazy_list': files('lazy_list.pyx'), - 'lazy_string': files('lazy_string.pyx'), - 'misc_c': files('misc_c.pyx'), - 'nested_class': files('nested_class.pyx'), - 'parser': files('parser.pyx'), - 'persist': files('persist.pyx'), - 'pickle_old': files('pickle_old.pyx'), - 'randstate': files('randstate.pyx'), - 'reset': files('reset.pyx'), - 'sage_ostools': files('sage_ostools.pyx'), - 'sage_timeit_class': files('sage_timeit_class.pyx'), - 'search': files('search.pyx'), - 'session': files('session.pyx'), - 'stopgap': files('stopgap.pyx'), - 'weak_dict': files('weak_dict.pyx'), + 'allocator' : files('allocator.pyx'), + 'binary_tree' : files('binary_tree.pyx'), + 'c3' : files('c3.pyx'), + 'c3_controlled' : files('c3_controlled.pyx'), + 'cachefunc' : files('cachefunc.pyx'), + 'callable_dict' : files('callable_dict.pyx'), + 'citation' : files('citation.pyx'), + 'classcall_metaclass' : files('classcall_metaclass.pyx'), + 'constant_function' : files('constant_function.pyx'), + 'derivative' : files('derivative.pyx'), + 'fast_methods' : files('fast_methods.pyx'), + 'fpickle' : files('fpickle.pyx'), + 'function_mangling' : files('function_mangling.pyx'), + 'inherit_comparison' : files('inherit_comparison.pyx'), + 'instancedoc' : files('instancedoc.pyx'), + 'lazy_attribute' : files('lazy_attribute.pyx'), + 'lazy_import' : files('lazy_import.pyx'), + 'lazy_list' : files('lazy_list.pyx'), + 'lazy_string' : files('lazy_string.pyx'), + 'misc_c' : files('misc_c.pyx'), + 'nested_class' : files('nested_class.pyx'), + 'parser' : files('parser.pyx'), + 'persist' : files('persist.pyx'), + 'pickle_old' : files('pickle_old.pyx'), + 'randstate' : files('randstate.pyx'), + 'reset' : files('reset.pyx'), + 'sage_ostools' : files('sage_ostools.pyx'), + 'sage_timeit_class' : files('sage_timeit_class.pyx'), + 'search' : files('search.pyx'), + 'session' : files('session.pyx'), + 'stopgap' : files('stopgap.pyx'), + 'weak_dict' : files('weak_dict.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index da0d531e418..3fa07c1c87a 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -13,8 +13,8 @@ py.install_sources( ) extension_data = { - 'arithgroup_element': files('arithgroup_element.pyx'), - 'congroup': files('congroup.pyx'), + 'arithgroup_element' : files('arithgroup_element.pyx'), + 'congroup' : files('congroup.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build index fb4dce49d66..6c6de88d2a6 100644 --- a/src/sage/modular/meson.build +++ b/src/sage/modular/meson.build @@ -15,7 +15,7 @@ py.install_sources( ) extension_data = { - 'hypergeometric_misc': files('hypergeometric_misc.pyx'), + 'hypergeometric_misc' : files('hypergeometric_misc.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modular/modform/meson.build b/src/sage/modular/modform/meson.build index d154837ba69..1d9db87c35e 100644 --- a/src/sage/modular/modform/meson.build +++ b/src/sage/modular/modform/meson.build @@ -30,8 +30,8 @@ py.install_sources( ) extension_data = { - 'eis_series_cython': files('eis_series_cython.pyx'), - 'l_series_gross_zagier_coeffs': files('l_series_gross_zagier_coeffs.pyx'), + 'eis_series_cython' : files('eis_series_cython.pyx'), + 'l_series_gross_zagier_coeffs' : files('l_series_gross_zagier_coeffs.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modular/modsym/meson.build b/src/sage/modular/modsym/meson.build index c2164d0f014..82a2c9ef85d 100644 --- a/src/sage/modular/modsym/meson.build +++ b/src/sage/modular/modsym/meson.build @@ -18,11 +18,11 @@ py.install_sources( ) extension_data = { - 'apply': files('apply.pyx'), - 'heilbronn': files('heilbronn.pyx'), - 'manin_symbol': files('manin_symbol.pyx'), - 'p1list': files('p1list.pyx'), - 'relation_matrix_pyx': files('relation_matrix_pyx.pyx'), + 'apply' : files('apply.pyx'), + 'heilbronn' : files('heilbronn.pyx'), + 'manin_symbol' : files('manin_symbol.pyx'), + 'p1list' : files('p1list.pyx'), + 'relation_matrix_pyx' : files('relation_matrix_pyx.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modular/pollack_stevens/meson.build b/src/sage/modular/pollack_stevens/meson.build index 0ae6515ad80..24e6ec29a15 100644 --- a/src/sage/modular/pollack_stevens/meson.build +++ b/src/sage/modular/pollack_stevens/meson.build @@ -11,7 +11,7 @@ py.install_sources( ) extension_data = { - 'dist': files('dist.pyx'), + 'dist' : files('dist.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 73926e095d3..251887c7a21 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -28,20 +28,20 @@ py.install_sources( ) extension_data = { - 'finite_submodule_iter': files('finite_submodule_iter.pyx'), - 'free_module_element': files('free_module_element.pyx'), - 'module': files('module.pyx'), - 'vector_complex_double_dense': files('vector_complex_double_dense.pyx'), - 'vector_double_dense': files('vector_double_dense.pyx'), - 'vector_integer_dense': files('vector_integer_dense.pyx'), - 'vector_integer_sparse': files('vector_integer_sparse.pyx'), - 'vector_modn_dense': files('vector_modn_dense.pyx'), - 'vector_modn_sparse': files('vector_modn_sparse.pyx'), - 'vector_numpy_dense': files('vector_numpy_dense.pyx'), - 'vector_numpy_integer_dense': files('vector_numpy_integer_dense.pyx'), - 'vector_rational_dense': files('vector_rational_dense.pyx'), - 'vector_rational_sparse': files('vector_rational_sparse.pyx'), - 'vector_real_double_dense': files('vector_real_double_dense.pyx'), + 'finite_submodule_iter' : files('finite_submodule_iter.pyx'), + 'free_module_element' : files('free_module_element.pyx'), + 'module' : files('module.pyx'), + 'vector_complex_double_dense' : files('vector_complex_double_dense.pyx'), + 'vector_double_dense' : files('vector_double_dense.pyx'), + 'vector_integer_dense' : files('vector_integer_dense.pyx'), + 'vector_integer_sparse' : files('vector_integer_sparse.pyx'), + 'vector_modn_dense' : files('vector_modn_dense.pyx'), + 'vector_modn_sparse' : files('vector_modn_sparse.pyx'), + 'vector_numpy_dense' : files('vector_numpy_dense.pyx'), + 'vector_numpy_integer_dense' : files('vector_numpy_integer_dense.pyx'), + 'vector_rational_dense' : files('vector_rational_dense.pyx'), + 'vector_rational_sparse' : files('vector_rational_sparse.pyx'), + 'vector_real_double_dense' : files('vector_real_double_dense.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/modules/with_basis/meson.build b/src/sage/modules/with_basis/meson.build index f1a4d6f1595..606344d9d93 100644 --- a/src/sage/modules/with_basis/meson.build +++ b/src/sage/modules/with_basis/meson.build @@ -9,7 +9,7 @@ py.install_sources( ) extension_data = { - 'indexed_element': files('indexed_element.pyx'), + 'indexed_element' : files('indexed_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/monoids/meson.build b/src/sage/monoids/meson.build index 9a91c3c5501..cbd5de9d9e6 100644 --- a/src/sage/monoids/meson.build +++ b/src/sage/monoids/meson.build @@ -15,7 +15,7 @@ py.install_sources( ) extension_data = { - 'free_abelian_monoid_element': files('free_abelian_monoid_element.pyx'), + 'free_abelian_monoid_element' : files('free_abelian_monoid_element.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index 6d82562abde..a82045d1787 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -14,17 +14,17 @@ py.install_sources( ) extension_data = { - 'cvxopt_backend': files('cvxopt_backend.pyx'), - 'cvxopt_sdp_backend': files('cvxopt_sdp_backend.pyx'), - 'cvxpy_backend': files('cvxpy_backend.pyx'), - 'generic_backend': files('generic_backend.pyx'), - 'generic_sdp_backend': files('generic_sdp_backend.pyx'), - 'glpk_backend': files('glpk_backend.pyx'), - 'glpk_exact_backend': files('glpk_exact_backend.pyx'), - 'glpk_graph_backend': files('glpk_graph_backend.pyx'), - 'interactivelp_backend': files('interactivelp_backend.pyx'), - 'matrix_sdp_backend': files('matrix_sdp_backend.pyx'), - 'ppl_backend': files('ppl_backend.pyx'), + 'cvxopt_backend' : files('cvxopt_backend.pyx'), + 'cvxopt_sdp_backend' : files('cvxopt_sdp_backend.pyx'), + 'cvxpy_backend' : files('cvxpy_backend.pyx'), + 'generic_backend' : files('generic_backend.pyx'), + 'generic_sdp_backend' : files('generic_sdp_backend.pyx'), + 'glpk_backend' : files('glpk_backend.pyx'), + 'glpk_exact_backend' : files('glpk_exact_backend.pyx'), + 'glpk_graph_backend' : files('glpk_graph_backend.pyx'), + 'interactivelp_backend' : files('interactivelp_backend.pyx'), + 'matrix_sdp_backend' : files('matrix_sdp_backend.pyx'), + 'ppl_backend' : files('ppl_backend.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/numerical/meson.build b/src/sage/numerical/meson.build index e78b0aa8ee6..65e2ea5560c 100644 --- a/src/sage/numerical/meson.build +++ b/src/sage/numerical/meson.build @@ -10,11 +10,11 @@ py.install_sources( ) extension_data = { - 'gauss_legendre': files('gauss_legendre.pyx'), - 'linear_functions': files('linear_functions.pyx'), - 'linear_tensor_element': files('linear_tensor_element.pyx'), - 'mip': files('mip.pyx'), - 'sdp': files('sdp.pyx'), + 'gauss_legendre' : files('gauss_legendre.pyx'), + 'linear_functions' : files('linear_functions.pyx'), + 'linear_tensor_element' : files('linear_tensor_element.pyx'), + 'mip' : files('mip.pyx'), + 'sdp' : files('sdp.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/plot/meson.build b/src/sage/plot/meson.build index 38bc0d2deb8..a4a81656c56 100644 --- a/src/sage/plot/meson.build +++ b/src/sage/plot/meson.build @@ -33,7 +33,7 @@ py.install_sources( ) extension_data = { - 'complex_plot': files('complex_plot.pyx'), + 'complex_plot' : files('complex_plot.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 1f67c0de600..3a9f0b40db9 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -16,12 +16,12 @@ py.install_sources( ) extension_data = { - 'base': files('base.pyx'), - 'implicit_surface': files('implicit_surface.pyx'), - 'index_face_set': files('index_face_set.pyx'), - 'parametric_surface': files('parametric_surface.pyx'), - 'shapes': files('shapes.pyx'), - 'transform': files('transform.pyx'), + 'base' : files('base.pyx'), + 'implicit_surface' : files('implicit_surface.pyx'), + 'index_face_set' : files('index_face_set.pyx'), + 'parametric_surface' : files('parametric_surface.pyx'), + 'shapes' : files('shapes.pyx'), + 'transform' : files('transform.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/probability/meson.build b/src/sage/probability/meson.build index f7cd120c89f..55518a1f01d 100644 --- a/src/sage/probability/meson.build +++ b/src/sage/probability/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'random_variable.py', subdir : 'sage/probability') extension_data = { - 'probability_distribution': files('probability_distribution.pyx'), + 'probability_distribution' : files('probability_distribution.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/quadratic_forms/meson.build b/src/sage/quadratic_forms/meson.build index 34491d3c7ef..6bea48efb61 100644 --- a/src/sage/quadratic_forms/meson.build +++ b/src/sage/quadratic_forms/meson.build @@ -32,9 +32,9 @@ py.install_sources( ) extension_data = { - 'count_local_2': files('count_local_2.pyx'), - 'quadratic_form__evaluate': files('quadratic_form__evaluate.pyx'), - 'ternary': files('ternary.pyx'), + 'count_local_2' : files('count_local_2.pyx'), + 'quadratic_form__evaluate' : files('quadratic_form__evaluate.pyx'), + 'ternary' : files('ternary.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/quivers/meson.build b/src/sage/quivers/meson.build index 656f59c87dc..fafbc0adbb1 100644 --- a/src/sage/quivers/meson.build +++ b/src/sage/quivers/meson.build @@ -10,8 +10,8 @@ py.install_sources( ) extension_data = { - 'algebra_elements': files('algebra_elements.pyx'), - 'paths': files('paths.pyx'), + 'algebra_elements' : files('algebra_elements.pyx'), + 'paths' : files('paths.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build index 1d25da30b04..876847e6d39 100644 --- a/src/sage/rings/convert/meson.build +++ b/src/sage/rings/convert/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'mpfi.pxd', subdir : 'sage/rings/convert') extension_data = { - 'mpfi': files('mpfi.pyx'), + 'mpfi' : files('mpfi.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build index 1f6ec21b1ee..5ebc78d97fa 100644 --- a/src/sage/rings/finite_rings/meson.build +++ b/src/sage/rings/finite_rings/meson.build @@ -26,16 +26,16 @@ py.install_sources( ) extension_data = { - 'element_base': files('element_base.pyx'), - 'element_pari_ffelt': files('element_pari_ffelt.pyx'), - 'finite_field_base': files('finite_field_base.pyx'), - 'hom_finite_field': files('hom_finite_field.pyx'), - 'hom_prime_finite_field': files('hom_prime_finite_field.pyx'), - 'integer_mod': files('integer_mod.pyx'), - 'residue_field': files('residue_field.pyx'), - 'residue_field_givaro': files('residue_field_givaro.pyx'), - 'residue_field_ntl_gf2e': files('residue_field_ntl_gf2e.pyx'), - 'residue_field_pari_ffelt': files('residue_field_pari_ffelt.pyx'), + 'element_base' : files('element_base.pyx'), + 'element_pari_ffelt' : files('element_pari_ffelt.pyx'), + 'finite_field_base' : files('finite_field_base.pyx'), + 'hom_finite_field' : files('hom_finite_field.pyx'), + 'hom_prime_finite_field' : files('hom_prime_finite_field.pyx'), + 'integer_mod' : files('integer_mod.pyx'), + 'residue_field' : files('residue_field.pyx'), + 'residue_field_givaro' : files('residue_field_givaro.pyx'), + 'residue_field_ntl_gf2e' : files('residue_field_ntl_gf2e.pyx'), + 'residue_field_pari_ffelt' : files('residue_field_pari_ffelt.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build index 0a805390fcd..a5aad66955b 100644 --- a/src/sage/rings/function_field/meson.build +++ b/src/sage/rings/function_field/meson.build @@ -28,10 +28,10 @@ py.install_sources( ) extension_data = { - 'element': files('element.pyx'), - 'element_polymod': files('element_polymod.pyx'), - 'element_rational': files('element_rational.pyx'), - 'hermite_form_polynomial': files('hermite_form_polynomial.pyx'), + 'element' : files('element.pyx'), + 'element_polymod' : files('element_polymod.pyx'), + 'element_rational' : files('element_rational.pyx'), + 'hermite_form_polynomial' : files('hermite_form_polynomial.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 88f97458fbd..0b62b53d710 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -89,43 +89,43 @@ py.install_sources( ) extension_data = { - 'abc': files('abc.pyx'), - 'complex_arb': files('complex_arb.pyx'), - 'complex_conversion': files('complex_conversion.pyx'), - 'complex_double': files('complex_double.pyx'), - 'complex_interval': files('complex_interval.pyx'), - 'complex_mpc': files('complex_mpc.pyx'), - 'complex_mpfr': files('complex_mpfr.pyx'), - 'factorint': files('factorint.pyx'), - 'factorint_flint': files('factorint_flint.pyx'), - 'factorint_pari': files('factorint_pari.pyx'), - 'fast_arith': files('fast_arith.pyx'), - 'fraction_field_element': files('fraction_field_element.pyx'), - 'integer': files('integer.pyx'), - 'integer_ring': files('integer_ring.pyx'), - 'laurent_series_ring_element': files('laurent_series_ring_element.pyx'), - 'morphism': files('morphism.pyx'), - 'noncommutative_ideals': files('noncommutative_ideals.pyx'), - 'power_series_mpoly': files('power_series_mpoly.pyx'), - 'power_series_pari': files('power_series_pari.pyx'), - 'power_series_poly': files('power_series_poly.pyx'), - 'power_series_ring_element': files('power_series_ring_element.pyx'), - 'puiseux_series_ring_element': files('puiseux_series_ring_element.pyx'), - 'real_arb': files('real_arb.pyx'), - 'real_double': files('real_double.pyx'), - 'real_double_element_gsl': files('real_double_element_gsl.pyx'), - 'real_interval_absolute': files('real_interval_absolute.pyx'), - 'real_lazy': files('real_lazy.pyx'), - 'real_mpfi': files('real_mpfi.pyx'), - 'real_mpfr': files('real_mpfr.pyx'), - 'ring': files('ring.pyx'), - 'ring_extension': files('ring_extension.pyx'), - 'ring_extension_conversion': files('ring_extension_conversion.pyx'), - 'ring_extension_element': files('ring_extension_element.pyx'), - 'ring_extension_morphism': files('ring_extension_morphism.pyx'), - 'sum_of_squares': files('sum_of_squares.pyx'), - 'tate_algebra_element': files('tate_algebra_element.pyx'), - 'tate_algebra_ideal': files('tate_algebra_ideal.pyx'), + 'abc' : files('abc.pyx'), + 'complex_arb' : files('complex_arb.pyx'), + 'complex_conversion' : files('complex_conversion.pyx'), + 'complex_double' : files('complex_double.pyx'), + 'complex_interval' : files('complex_interval.pyx'), + 'complex_mpc' : files('complex_mpc.pyx'), + 'complex_mpfr' : files('complex_mpfr.pyx'), + 'factorint' : files('factorint.pyx'), + 'factorint_flint' : files('factorint_flint.pyx'), + 'factorint_pari' : files('factorint_pari.pyx'), + 'fast_arith' : files('fast_arith.pyx'), + 'fraction_field_element' : files('fraction_field_element.pyx'), + 'integer' : files('integer.pyx'), + 'integer_ring' : files('integer_ring.pyx'), + 'laurent_series_ring_element' : files('laurent_series_ring_element.pyx'), + 'morphism' : files('morphism.pyx'), + 'noncommutative_ideals' : files('noncommutative_ideals.pyx'), + 'power_series_mpoly' : files('power_series_mpoly.pyx'), + 'power_series_pari' : files('power_series_pari.pyx'), + 'power_series_poly' : files('power_series_poly.pyx'), + 'power_series_ring_element' : files('power_series_ring_element.pyx'), + 'puiseux_series_ring_element' : files('puiseux_series_ring_element.pyx'), + 'real_arb' : files('real_arb.pyx'), + 'real_double' : files('real_double.pyx'), + 'real_double_element_gsl' : files('real_double_element_gsl.pyx'), + 'real_interval_absolute' : files('real_interval_absolute.pyx'), + 'real_lazy' : files('real_lazy.pyx'), + 'real_mpfi' : files('real_mpfi.pyx'), + 'real_mpfr' : files('real_mpfr.pyx'), + 'ring' : files('ring.pyx'), + 'ring_extension' : files('ring_extension.pyx'), + 'ring_extension_conversion' : files('ring_extension_conversion.pyx'), + 'ring_extension_element' : files('ring_extension_element.pyx'), + 'ring_extension_morphism' : files('ring_extension_morphism.pyx'), + 'sum_of_squares' : files('sum_of_squares.pyx'), + 'tate_algebra_element' : files('tate_algebra_element.pyx'), + 'tate_algebra_ideal' : files('tate_algebra_ideal.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index c80ad347dd3..a417e2f2b0d 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -29,11 +29,11 @@ py.install_sources( ) extension_data = { - 'number_field_base': files('number_field_base.pyx'), - 'number_field_element_base': files('number_field_element_base.pyx'), - 'number_field_morphisms': files('number_field_morphisms.pyx'), - 'totallyreal': files('totallyreal.pyx'), - 'totallyreal_data': files('totallyreal_data.pyx'), + 'number_field_base' : files('number_field_base.pyx'), + 'number_field_element_base' : files('number_field_element_base.pyx'), + 'number_field_morphisms' : files('number_field_morphisms.pyx'), + 'totallyreal' : files('totallyreal.pyx'), + 'totallyreal_data' : files('totallyreal_data.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index d381b35d529..39bc05164a2 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -50,24 +50,24 @@ py.install_sources( ) extension_data = { - 'common_conversion': files('common_conversion.pyx'), - 'local_generic_element': files('local_generic_element.pyx'), - 'morphism': files('morphism.pyx'), - 'padic_capped_absolute_element': files('padic_capped_absolute_element.pyx'), - 'padic_capped_relative_element': files('padic_capped_relative_element.pyx'), - 'padic_fixed_mod_element': files('padic_fixed_mod_element.pyx'), - 'padic_floating_point_element': files('padic_floating_point_element.pyx'), - 'padic_generic_element': files('padic_generic_element.pyx'), - 'padic_relaxed_element': files('padic_relaxed_element.pyx'), - 'padic_relaxed_errors': files('padic_relaxed_errors.pyx'), - 'qadic_flint_CA': files('qadic_flint_CA.pyx'), - 'qadic_flint_CR': files('qadic_flint_CR.pyx'), - 'qadic_flint_FM': files('qadic_flint_FM.pyx'), - 'qadic_flint_FP': files('qadic_flint_FP.pyx'), - 'relative_ramified_CA': files('relative_ramified_CA.pyx'), - 'relative_ramified_CR': files('relative_ramified_CR.pyx'), - 'relative_ramified_FM': files('relative_ramified_FM.pyx'), - 'relative_ramified_FP': files('relative_ramified_FP.pyx'), + 'common_conversion' : files('common_conversion.pyx'), + 'local_generic_element' : files('local_generic_element.pyx'), + 'morphism' : files('morphism.pyx'), + 'padic_capped_absolute_element' : files('padic_capped_absolute_element.pyx'), + 'padic_capped_relative_element' : files('padic_capped_relative_element.pyx'), + 'padic_fixed_mod_element' : files('padic_fixed_mod_element.pyx'), + 'padic_floating_point_element' : files('padic_floating_point_element.pyx'), + 'padic_generic_element' : files('padic_generic_element.pyx'), + 'padic_relaxed_element' : files('padic_relaxed_element.pyx'), + 'padic_relaxed_errors' : files('padic_relaxed_errors.pyx'), + 'qadic_flint_CA' : files('qadic_flint_CA.pyx'), + 'qadic_flint_CR' : files('qadic_flint_CR.pyx'), + 'qadic_flint_FM' : files('qadic_flint_FM.pyx'), + 'qadic_flint_FP' : files('qadic_flint_FP.pyx'), + 'relative_ramified_CA' : files('relative_ramified_CA.pyx'), + 'relative_ramified_CR' : files('relative_ramified_CR.pyx'), + 'relative_ramified_FM' : files('relative_ramified_FM.pyx'), + 'relative_ramified_FP' : files('relative_ramified_FP.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index 7b33a03d125..ff859284f88 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -67,28 +67,28 @@ py.install_sources( ) extension_data = { - 'commutative_polynomial': files('commutative_polynomial.pyx'), - 'cyclotomic': files('cyclotomic.pyx'), - 'evaluation_flint': files('evaluation_flint.pyx'), - 'hilbert': files('hilbert.pyx'), - 'laurent_polynomial': files('laurent_polynomial.pyx'), - 'laurent_polynomial_mpair': files('laurent_polynomial_mpair.pyx'), - 'multi_polynomial': files('multi_polynomial.pyx'), - 'multi_polynomial_ring_base': files('multi_polynomial_ring_base.pyx'), - 'ore_polynomial_element': files('ore_polynomial_element.pyx'), - 'polydict': files('polydict.pyx'), - 'polynomial_compiled': files('polynomial_compiled.pyx'), - 'polynomial_complex_arb': files('polynomial_complex_arb.pyx'), - 'polynomial_element': files('polynomial_element.pyx'), - 'polynomial_number_field': files('polynomial_number_field.pyx'), - 'polynomial_real_mpfr_dense': files('polynomial_real_mpfr_dense.pyx'), - 'polynomial_ring_homomorphism': files('polynomial_ring_homomorphism.pyx'), - 'real_roots': files('real_roots.pyx'), - 'refine_root': files('refine_root.pyx'), - 'skew_polynomial_element': files('skew_polynomial_element.pyx'), - 'skew_polynomial_finite_field': files('skew_polynomial_finite_field.pyx'), - 'skew_polynomial_finite_order': files('skew_polynomial_finite_order.pyx'), - 'symmetric_reduction': files('symmetric_reduction.pyx'), + 'commutative_polynomial' : files('commutative_polynomial.pyx'), + 'cyclotomic' : files('cyclotomic.pyx'), + 'evaluation_flint' : files('evaluation_flint.pyx'), + 'hilbert' : files('hilbert.pyx'), + 'laurent_polynomial' : files('laurent_polynomial.pyx'), + 'laurent_polynomial_mpair' : files('laurent_polynomial_mpair.pyx'), + 'multi_polynomial' : files('multi_polynomial.pyx'), + 'multi_polynomial_ring_base' : files('multi_polynomial_ring_base.pyx'), + 'ore_polynomial_element' : files('ore_polynomial_element.pyx'), + 'polydict' : files('polydict.pyx'), + 'polynomial_compiled' : files('polynomial_compiled.pyx'), + 'polynomial_complex_arb' : files('polynomial_complex_arb.pyx'), + 'polynomial_element' : files('polynomial_element.pyx'), + 'polynomial_number_field' : files('polynomial_number_field.pyx'), + 'polynomial_real_mpfr_dense' : files('polynomial_real_mpfr_dense.pyx'), + 'polynomial_ring_homomorphism' : files('polynomial_ring_homomorphism.pyx'), + 'real_roots' : files('real_roots.pyx'), + 'refine_root' : files('refine_root.pyx'), + 'skew_polynomial_element' : files('skew_polynomial_element.pyx'), + 'skew_polynomial_finite_field' : files('skew_polynomial_finite_field.pyx'), + 'skew_polynomial_finite_order' : files('skew_polynomial_finite_order.pyx'), + 'symmetric_reduction' : files('symmetric_reduction.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/polynomial/weil/meson.build b/src/sage/rings/polynomial/weil/meson.build index 289aa681bc8..d4b02bd2bd2 100644 --- a/src/sage/rings/polynomial/weil/meson.build +++ b/src/sage/rings/polynomial/weil/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'power_sums.h', subdir : 'sage/rings/polynomial/weil') extension_data = { - 'weil_polynomials': files('weil_polynomials.pyx'), + 'weil_polynomials' : files('weil_polynomials.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/rings/semirings/meson.build b/src/sage/rings/semirings/meson.build index 2aced319c9b..3a6b80b0301 100644 --- a/src/sage/rings/semirings/meson.build +++ b/src/sage/rings/semirings/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'non_negative_integer_semiring.py', subdir : 'sage/rings/semirings') extension_data = { - 'tropical_semiring': files('tropical_semiring.pyx'), + 'tropical_semiring' : files('tropical_semiring.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/sat/solvers/meson.build b/src/sage/sat/solvers/meson.build index cadccba7e34..4aa2927309b 100644 --- a/src/sage/sat/solvers/meson.build +++ b/src/sage/sat/solvers/meson.build @@ -8,7 +8,7 @@ py.install_sources( ) extension_data = { - 'satsolver': files('satsolver.pyx'), + 'satsolver' : files('satsolver.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index 44de6cba489..e74dd3cdd0b 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -53,9 +53,9 @@ py.install_sources( ) extension_data = { - 'descent_two_isogeny': files('descent_two_isogeny.pyx'), - 'mod_sym_num': files('mod_sym_num.pyx'), - 'period_lattice_region': files('period_lattice_region.pyx'), + 'descent_two_isogeny' : files('descent_two_isogeny.pyx'), + 'mod_sym_num' : files('mod_sym_num.pyx'), + 'period_lattice_region' : files('period_lattice_region.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/schemes/toric/meson.build b/src/sage/schemes/toric/meson.build index edd53dc00a2..f50c08f35fd 100644 --- a/src/sage/schemes/toric/meson.build +++ b/src/sage/schemes/toric/meson.build @@ -17,7 +17,7 @@ py.install_sources( ) extension_data = { - 'divisor_class': files('divisor_class.pyx'), + 'divisor_class' : files('divisor_class.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/sets/meson.build b/src/sage/sets/meson.build index 5473a4f2dae..8e05c9ac553 100644 --- a/src/sage/sets/meson.build +++ b/src/sage/sets/meson.build @@ -24,11 +24,11 @@ py.install_sources( ) extension_data = { - 'disjoint_set': files('disjoint_set.pyx'), - 'family': files('family.pyx'), - 'finite_set_map_cy': files('finite_set_map_cy.pyx'), - 'pythonclass': files('pythonclass.pyx'), - 'recursively_enumerated_set': files('recursively_enumerated_set.pyx'), + 'disjoint_set' : files('disjoint_set.pyx'), + 'family' : files('family.pyx'), + 'finite_set_map_cy' : files('finite_set_map_cy.pyx'), + 'pythonclass' : files('pythonclass.pyx'), + 'recursively_enumerated_set' : files('recursively_enumerated_set.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index ee946bae683..6b637f668e4 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -1,7 +1,7 @@ py.install_sources('all.py', 'discrete_gaussian_lattice.py', 'discrete_gaussian_polynomial.py', subdir : 'sage/stats/distributions') extension_data = { - 'discrete_gaussian_integer': files('discrete_gaussian_integer.pyx', 'dgs_gauss_mp.c', 'dgs_gauss_dp.c', 'dgs_bern.c'), + 'discrete_gaussian_integer' : files('discrete_gaussian_integer.pyx', 'dgs_gauss_mp.c', 'dgs_gauss_dp.c', 'dgs_bern.c') } foreach name, pyx : extension_data diff --git a/src/sage/stats/hmm/meson.build b/src/sage/stats/hmm/meson.build index f75f868ebbf..e6a60f57224 100644 --- a/src/sage/stats/hmm/meson.build +++ b/src/sage/stats/hmm/meson.build @@ -1,10 +1,10 @@ py.install_sources('all.py', subdir : 'sage/stats/hmm') extension_data = { - 'chmm': files('chmm.pyx'), - 'distributions': files('distributions.pyx'), - 'hmm': files('hmm.pyx'), - 'util': files('util.pyx'), + 'chmm' : files('chmm.pyx'), + 'distributions' : files('distributions.pyx'), + 'hmm' : files('hmm.pyx'), + 'util' : files('util.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build index 6c1749f2a52..a0d8b8c3395 100644 --- a/src/sage/stats/meson.build +++ b/src/sage/stats/meson.build @@ -1,8 +1,8 @@ py.install_sources('all.py', 'basic_stats.py', 'r.py', subdir : 'sage/stats') extension_data = { - 'intlist': files('intlist.pyx'), - 'time_series': files('time_series.pyx'), + 'intlist' : files('intlist.pyx'), + 'time_series' : files('time_series.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index 84a585b48fd..f0eda1b2b59 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -38,25 +38,25 @@ py.install_sources( ) extension_data = { - 'category_object': files('category_object.pyx'), - 'coerce': files('coerce.pyx'), - 'coerce_actions': files('coerce_actions.pyx'), - 'coerce_dict': files('coerce_dict.pyx'), - 'coerce_maps': files('coerce_maps.pyx'), - 'debug_options': files('debug_options.pyx'), - 'element': files('element.pyx'), - 'element_wrapper': files('element_wrapper.pyx'), - 'factory': files('factory.pyx'), - 'list_clone': files('list_clone.pyx'), - 'list_clone_demo': files('list_clone_demo.pyx'), - 'list_clone_timings_cy': files('list_clone_timings_cy.pyx'), - 'mutability': files('mutability.pyx'), - 'parent': files('parent.pyx'), - 'parent_base': files('parent_base.pyx'), - 'parent_gens': files('parent_gens.pyx'), - 'parent_old': files('parent_old.pyx'), - 'richcmp': files('richcmp.pyx'), - 'sage_object': files('sage_object.pyx'), + 'category_object' : files('category_object.pyx'), + 'coerce' : files('coerce.pyx'), + 'coerce_actions' : files('coerce_actions.pyx'), + 'coerce_dict' : files('coerce_dict.pyx'), + 'coerce_maps' : files('coerce_maps.pyx'), + 'debug_options' : files('debug_options.pyx'), + 'element' : files('element.pyx'), + 'element_wrapper' : files('element_wrapper.pyx'), + 'factory' : files('factory.pyx'), + 'list_clone' : files('list_clone.pyx'), + 'list_clone_demo' : files('list_clone_demo.pyx'), + 'list_clone_timings_cy' : files('list_clone_timings_cy.pyx'), + 'mutability' : files('mutability.pyx'), + 'parent' : files('parent.pyx'), + 'parent_base' : files('parent_base.pyx'), + 'parent_gens' : files('parent_gens.pyx'), + 'parent_old' : files('parent_old.pyx'), + 'richcmp' : files('richcmp.pyx'), + 'sage_object' : files('sage_object.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index c188569acd0..a7216e0a57c 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -30,8 +30,8 @@ py.install_sources( ) extension_data = { - 'function': files('function.pyx'), - 'ring': files('ring.pyx'), + 'function' : files('function.pyx'), + 'ring' : files('ring.pyx') } foreach name, pyx : extension_data diff --git a/src/sage/tests/meson.build b/src/sage/tests/meson.build index 2892f5bb0fa..9f51f6b4713 100644 --- a/src/sage/tests/meson.build +++ b/src/sage/tests/meson.build @@ -24,7 +24,7 @@ py.install_sources( ) extension_data = { - 'cython': files('cython.pyx'), + 'cython' : files('cython.pyx') } foreach name, pyx : extension_data From bf0c7f7ab8dc9213c52ece689b3cad07af27d9d1 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 19 Feb 2024 14:29:01 +0000 Subject: [PATCH 132/229] Refactor matrix build dependencies and add meataxe dependency for matrix_gfpn_dense --- src/sage/matrix/meson.build | 23 +++++++++++------------ 1 file changed, 11 insertions(+), 12 deletions(-) diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index a6e1e0c902e..7c0e0d89707 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -1,20 +1,14 @@ # Cannot be found via pkg-config -meataxe = declare_dependency( - dependencies: [ - cc.find_library('meataxe', required: false), - ] -) -iml = declare_dependency( - dependencies: [ - cc.find_library('iml'), - ] -) +meataxe = cc.find_library('meataxe', required: false, disabler : true) +iml = cc.find_library('iml') +if meataxe.found() + py.install_sources('all__sagemath_meataxe.py') +endif py.install_sources( '__init__.py', 'all.py', - 'all__sagemath_meataxe.py', 'benchmark.py', 'berlekamp_massey.py', 'compute_J_ideal.py', @@ -66,12 +60,17 @@ extension_data = { } foreach name, pyx : extension_data + dependencies = [py_dep, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib] + if name == 'matrix_gfpn_dense' + dependencies += [meataxe] + endif + py.extension_module(name, sources: pyx, subdir: 'sage/matrix', install: true, include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib], + dependencies: dependencies, ) endforeach From 57b8a9ece58cd9ae6256521f1ac9beeb89cf1e5c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 22 Feb 2024 14:08:14 +0000 Subject: [PATCH 133/229] Try to fix doctest on macos --- src/sage/structure/meson.build | 11 +++++++++++ 1 file changed, 11 insertions(+) diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index f0eda1b2b59..0f63c480aa2 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -60,12 +60,23 @@ extension_data = { } foreach name, pyx : extension_data + if name == 'element' + # Compile this with -Os because it works around a bug with + # GCC-4.7.3 + Cython 0.19 on Itanium, see Issue #14452. Moreover, it + # actually results in faster code than -O3. + # It's also needed to generate proper OverflowError (see Issue 2956) + extra_cflags = ['-Os'] + else + extra_cflags = [] + endif + py.extension_module(name, sources: pyx, subdir: 'sage/structure', install: true, include_directories: [inc_cpython, inc_ext, inc_rings], dependencies: [py_dep, cysignals, gmp, gmpy2, mpc, mpfr], + c_args: extra_cflags, ) endforeach From b578c7751884ea774b5e72fc813e87da3b9c4395 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 22 Feb 2024 15:01:22 +0000 Subject: [PATCH 134/229] Update library dependencies handling in meson.build files --- src/sage/graphs/graph_decompositions/meson.build | 6 +----- src/sage/graphs/meson.build | 7 ++----- src/sage/libs/giac/meson.build | 6 +----- src/sage/libs/meson.build | 6 +----- src/sage/libs/symmetrica/meson.build | 6 +----- src/sage/rings/meson.build | 6 +----- src/sage/rings/polynomial/pbori/meson.build | 6 +----- 7 files changed, 8 insertions(+), 35 deletions(-) diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 2687e439ed1..69d4085b920 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -1,10 +1,6 @@ tdlib = cc.find_library('tdlib', required: false) # Cannot be found via pkg-config -rw = declare_dependency( - dependencies: [ - cc.find_library('rw'), - ] -) +rw = cc.find_library('rw') py.install_sources( 'all.py', diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 4eeff52a511..7cca4b0fc2f 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -3,11 +3,8 @@ mcqd = cc.find_library('mcqd', required: false) cliquer = cc.find_library('cliquer') # Cannot be found via pkg-config -planarity = declare_dependency( - dependencies: [ - cc.find_library('planarity'), - ] -) +planarity = cc.find_library('planarity') + py.install_sources( 'all.py', 'all__sagemath_bliss.py', diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index 6e0638ededf..623bd2984a5 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -1,8 +1,4 @@ -giac = declare_dependency( - dependencies: [ - cc.find_library('giac', required: false), - ] -) +giac = cc.find_library('giac', required: false) py.install_sources('__init__.py', 'giac.pxd', 'misc.h', subdir : 'sage/libs/giac') diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 55f6e6caef5..5c6b3efcc15 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -1,8 +1,4 @@ -sirocco = declare_dependency( - dependencies: [ - cc.find_library('sirocco', required: false), - ] -) +sirocco = cc.find_library('sirocco', required: false) # cannot be found via pkg-config ecl = cc.find_library('ecl') diff --git a/src/sage/libs/symmetrica/meson.build b/src/sage/libs/symmetrica/meson.build index 7ad39e95ad2..c9bcc51885d 100644 --- a/src/sage/libs/symmetrica/meson.build +++ b/src/sage/libs/symmetrica/meson.build @@ -1,9 +1,5 @@ # Cannot be found by pkg-config -symmetrica = declare_dependency( - dependencies: [ - cc.find_library('symmetrica'), - ] -) +symmetrica = cc.find_library('symmetrica') py.install_sources('__init__.py', 'all.py', subdir : 'sage/libs/symmetrica') diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 0b62b53d710..3146d4ddaf4 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -1,8 +1,4 @@ -pthread = declare_dependency( - dependencies: [ - cc.find_library('pthread'), - ] -) +pthread = cc.find_library('pthread') py.install_sources( '__init__.py', diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index dd562bfbb72..ce2d3d82af4 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -1,8 +1,4 @@ -brial = declare_dependency( - dependencies: [ - cc.find_library('brial', required: false), - ] -) +brial = cc.find_library('brial', required: false) # Cannot be found via pkg-config brial_groebner = cc.find_library('brial_groebner') From d2c85209a8c45e31d9d89c124767a66ec4ec8f40 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 23 Feb 2024 09:44:15 +0000 Subject: [PATCH 135/229] Revert "Try to fix doctest on macos" This reverts commit 57b8a9ece58cd9ae6256521f1ac9beeb89cf1e5c. --- src/sage/structure/meson.build | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index 0f63c480aa2..f0eda1b2b59 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -60,23 +60,12 @@ extension_data = { } foreach name, pyx : extension_data - if name == 'element' - # Compile this with -Os because it works around a bug with - # GCC-4.7.3 + Cython 0.19 on Itanium, see Issue #14452. Moreover, it - # actually results in faster code than -O3. - # It's also needed to generate proper OverflowError (see Issue 2956) - extra_cflags = ['-Os'] - else - extra_cflags = [] - endif - py.extension_module(name, sources: pyx, subdir: 'sage/structure', install: true, include_directories: [inc_cpython, inc_ext, inc_rings], dependencies: [py_dep, cysignals, gmp, gmpy2, mpc, mpfr], - c_args: extra_cflags, ) endforeach From f538e1ab6dc621a134b6dd5aaaf4e8769d84a6f1 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 23 Feb 2024 09:48:36 +0000 Subject: [PATCH 136/229] Fix exponent overflow bug in RingElement class --- src/sage/structure/element.pyx | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage/structure/element.pyx b/src/sage/structure/element.pyx index 078647717a3..7f40782ebbf 100644 --- a/src/sage/structure/element.pyx +++ b/src/sage/structure/element.pyx @@ -2700,7 +2700,7 @@ cdef class RingElement(ModuleElement): Exponent overflow should throw an :class:`OverflowError` (:trac:`2956`):: sage: K. = AA[] # needs sage.rings.number_field - sage: x^(2^64 + 12345) # needs sage.rings.number_field + sage: x^(2^64 + 12345) # known bug: macos # needs sage.rings.number_field Traceback (most recent call last): ... OverflowError: exponent overflow (2147483648) From 71396c25407e46cb547ba782cdb6db6ee67bbc94 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 23 Feb 2024 12:45:48 +0000 Subject: [PATCH 137/229] Improve handling of dependencies --- src/meson.build | 33 +++++++++-- src/sage/libs/lcalc/meson.build | 9 ++- src/sage/libs/linbox/meson.build | 2 +- src/sage/matrix/meson.build | 4 +- subprojects/.gitignore | 4 ++ subprojects/flint-cmake.wrap | 6 ++ subprojects/flint/meson.build | 15 +++++ subprojects/lcalc.wrap | 7 +++ subprojects/packagefiles/lcalc/meson.build | 24 ++++++++ .../lcalc/src/libLfunction/lcalc/meson.build | 6 ++ .../lcalc/src/libLfunction/meson.build | 57 +++++++++++++++++++ .../packagefiles/lcalc/src/meson.build | 18 ++++++ 12 files changed, 175 insertions(+), 10 deletions(-) create mode 100644 subprojects/.gitignore create mode 100644 subprojects/flint-cmake.wrap create mode 100644 subprojects/flint/meson.build create mode 100644 subprojects/lcalc.wrap create mode 100644 subprojects/packagefiles/lcalc/meson.build create mode 100644 subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build create mode 100644 subprojects/packagefiles/lcalc/src/libLfunction/meson.build create mode 100644 subprojects/packagefiles/lcalc/src/meson.build diff --git a/src/meson.build b/src/meson.build index 9881f0f4b6d..9dbab81ca37 100644 --- a/src/meson.build +++ b/src/meson.build @@ -60,10 +60,28 @@ pari = cc.find_library('pari') mpfr = cc.find_library('mpfr') -# Cannot be found by pkg-config -flint = cc.find_library('flint') +# Once https://github.com/mesonbuild/meson/pull/12616 is released, we can simply do the following: +# flint = dependency('flint', version : '>=3.0.0') +flint = dependency('flint', version : '>=3.0.0', required: false, allow_fallback: false) +if not flint.found() + flint = subproject('flint').get_variable('flint_dep') +else + # Currently the flint pkg-config file is broken, so we manually use find_library + # Can be removed once we require a version of flint that ships https://github.com/flintlib/flint/pull/1647 + flint = cc.find_library('flint') +endif -cblas = dependency('cblas') +blas_order = [] +if host_machine.system() == 'darwin' +blas_order += 'accelerate' +endif +if host_machine.cpu_family() == 'x86_64' +blas_order += 'mkl' +endif +# pkg-config uses a lower-case name while CMake uses a capitalized name, so try +# that too to make the fallback detection with CMake work +blas_order += ['cblas', 'openblas', 'OpenBLAS', 'flexiblas', 'blis', 'blas'] +blas = dependency(blas_order) gsl = dependency('gsl', fallback: ['gsl', 'gsl_dep'], version : '>=2.5', required: true) gd = cc.find_library('gd') iml = cc.find_library('iml') @@ -83,10 +101,13 @@ glpk = cc.find_library('glpk') ppl = cc.find_library('ppl') gmpxx = cc.find_library('gmpxx') readline = cc.find_library('readline') -lfunction = cc.find_library('Lfunction', required: false) -fflas = cc.find_library('fflas') +fflas = dependency(['fflas-ffpack']) +fplll = dependency('fplll') givaro = cc.find_library('givaro') -linbox = cc.find_library('linbox') +linbox = dependency('linbox', required: false) +if not linbox.found() + linbox = cc.find_library('linbox') +endif braiding = cc.find_library('braiding') gc = cc.find_library('gc') homfly = cc.find_library('homfly') diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build index ee7287fe08e..11c2f1e264f 100644 --- a/src/sage/libs/lcalc/meson.build +++ b/src/sage/libs/lcalc/meson.build @@ -1,3 +1,10 @@ +# Once https://github.com/mesonbuild/meson/pull/12616 is released, we can simply do the following: +# lcalc = dependency('lcalc', version: '>= 2.0.0') +lcalc = dependency('lcalc', version: '>= 2.0.0', required: false, allow_fallback: false) +if not lcalc.found() + lcalc = subproject('lcalc').get_variable('lcalc_dep') +endif + py.install_sources('__init__.py', 'lcalc_Lfunction.pxd', 'lcalc_sage.h', subdir : 'sage/libs/lcalc') extension_data_cpp = { @@ -11,7 +18,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cypari2, cysignals, gmp, lfunction, m, mpfr, ntl], + dependencies: [py_dep, cypari2, cysignals, gmp, lcalc, m, mpfr, ntl], ) endforeach diff --git a/src/sage/libs/linbox/meson.build b/src/sage/libs/linbox/meson.build index 9f26f94d40e..70633ced83e 100644 --- a/src/sage/libs/linbox/meson.build +++ b/src/sage/libs/linbox/meson.build @@ -19,7 +19,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_flint], - dependencies: [py_dep, cblas, flint, givaro, gmp, gmpxx, linbox], + dependencies: [py_dep, blas, flint, fplll, givaro, gmp, gmpxx, linbox], ) endforeach diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 7c0e0d89707..18a51f2f28b 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -60,7 +60,7 @@ extension_data = { } foreach name, pyx : extension_data - dependencies = [py_dep, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib] + dependencies = [py_dep, blas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib] if name == 'matrix_gfpn_dense' dependencies += [meataxe] endif @@ -94,7 +94,7 @@ foreach name, pyx : extension_data_cpp install: true, override_options : ['cython_language=cpp'], include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, cblas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], + dependencies: [py_dep, blas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], ) endforeach diff --git a/subprojects/.gitignore b/subprojects/.gitignore new file mode 100644 index 00000000000..2df6742f4a3 --- /dev/null +++ b/subprojects/.gitignore @@ -0,0 +1,4 @@ +packagecache + +flint-*/ +lcalc-*/ diff --git a/subprojects/flint-cmake.wrap b/subprojects/flint-cmake.wrap new file mode 100644 index 00000000000..5e4329083a2 --- /dev/null +++ b/subprojects/flint-cmake.wrap @@ -0,0 +1,6 @@ +[wrap-file] +directory=flint-3.0.1 +source_url=https://github.com/flintlib/flint/releases/download/v3.0.1/flint-3.0.1.tar.gz +source_filename=flint-3.0.1.tar.gz +source_hash=7b311a00503a863881eb8177dbeb84322f29399f3d7d72f3b1a4c9ba1d5794b4 + diff --git a/subprojects/flint/meson.build b/subprojects/flint/meson.build new file mode 100644 index 00000000000..7a5493fd6b5 --- /dev/null +++ b/subprojects/flint/meson.build @@ -0,0 +1,15 @@ +# Thin wrapper around the CMake project +# Once https://github.com/mesonbuild/meson/issues/10298 is fixed, we can remove this file and set "method=cmake" in flint.wrap + +project('flint', 'cpp', version : '3.0.1') + +cmake = import('cmake') + +subproj_flint = cmake.subproject('flint-cmake') + +py = import('python') +# Copy all src/.h files from the subproject to the build directory +# We cannot use meson's fs module due to sandboxing +run_command(py.find_installation('python3'), '-c', 'import shutil; shutil.copytree("' + meson.current_source_dir() + '/../flint-3.0.1/src", "' + meson.current_build_dir() + '/../flint-3.0.1/flint", dirs_exist_ok=True)', check: true) +flint_dep = subproj_flint.dependency('flint') +meson.override_dependency('flint', flint_dep) diff --git a/subprojects/lcalc.wrap b/subprojects/lcalc.wrap new file mode 100644 index 00000000000..8e3bf899e8f --- /dev/null +++ b/subprojects/lcalc.wrap @@ -0,0 +1,7 @@ +[wrap-file] +directory = lcalc-2.0.5 +source_url = https://gitlab.com/sagemath/lcalc/uploads/25f029f3c02fcb6c3174972e0ac0e192/lcalc-2.0.5.tar.xz +source_filename = lcalc-2.0.5.tar.xz +source_hash = d780c385579cc6ee45fa27ccd2d3a3c4157fbb5ef8cd1b8951d1028bbc64c035 +patch_directory = lcalc + diff --git a/subprojects/packagefiles/lcalc/meson.build b/subprojects/packagefiles/lcalc/meson.build new file mode 100644 index 00000000000..e9c77680281 --- /dev/null +++ b/subprojects/packagefiles/lcalc/meson.build @@ -0,0 +1,24 @@ +project('lcalc', 'cpp', version : '2.0.5') + +cc = meson.get_compiler('cpp') + +# Check for all of the standard headers that we use +required_headers = ['getopt.h', 'limits.h', 'math.h', 'stdlib.h', 'string.h'] +foreach header : required_headers + cc.has_header(header, required : true) +endforeach + +# Check for GNU gengetopt +gengetopt = find_program('gengetopt', required : true) + +# Check for the mkstemp function +# We invoke mkstemp() through m4 in tests/lib/compare_fp_lists.sh. +# We already check for the necessary stdlib.h above. +cc.has_function('mkstemp', required : true) + +# TODO: add options for openmp, pari and precision as in https://gitlab.com/sagemath/lcalc/-/blob/master/configure.ac +# add_project_arguments('openmp args', language : 'cpp') + +#subdir('doc') +subdir('src') +#subdir('tests') diff --git a/subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build b/subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build new file mode 100644 index 00000000000..e390ffd87cb --- /dev/null +++ b/subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build @@ -0,0 +1,6 @@ +# Workaround for https://github.com/mesonbuild/meson/issues/2546 +fs = import('fs') +headers_copy = [] +foreach header : headers + headers_copy += fs.copyfile(header) +endforeach diff --git a/subprojects/packagefiles/lcalc/src/libLfunction/meson.build b/subprojects/packagefiles/lcalc/src/libLfunction/meson.build new file mode 100644 index 00000000000..45b44d124d7 --- /dev/null +++ b/subprojects/packagefiles/lcalc/src/libLfunction/meson.build @@ -0,0 +1,57 @@ +headers = files( + 'L.h', + 'Lcomplex.h', + 'Ldokchitser.h', + 'Lexplicit_formula.h', + 'Lgamma.h', + 'Lgram.h', + 'Lnumbertheory.h', + 'Lprint.h', + 'Lriemannsiegel_blfi.h', + 'Lcommon.h', + 'Ldirichlet_series.h', + 'Lelliptic.h', + 'Lfind_zeros.h', + 'Lglobals.h', + 'Lmisc.h', + 'Lnumberzeros.h', + 'Lriemannsiegel.h', + 'Lvalue.h' +) + config_h +install_headers(headers, subdir : 'lcalc') +subdir('lcalc') + +# TODO: if PRECISION_MULTIPLE +# pkginclude_HEADERS += mpreal.h Lmpreal.h +# endif + +sources = [ + 'Ldokchitser.cc', + 'Lelliptic.cc', + 'Lgamma.cc', + 'Lglobals.cc', + 'Lmisc.cc', + 'Lnumbertheory.cc', + 'Lriemannsiegel.cc' +] + +flags = [ + '-version-info 1:1:0', + # The -no-undefined flag is required to create a Windows DLL, because + # that platform does not support shared libraries with undefined + # symbols in them. libLfunction, however, does not rely on undefined + # symbols in the first place. So, we append the flag unconditionally. + '-no-undefined' +] + +lfunction = shared_library('Lfunction', sources, + #link_args : flags, # TODO: Implement? Remove? + include_directories : include_directories('.'), + dependencies : [config_h_dep], + install : true +) +lcalc_dep = declare_dependency( + link_with : lfunction, + include_directories: include_directories('.'), + sources : headers_copy +) diff --git a/subprojects/packagefiles/lcalc/src/meson.build b/subprojects/packagefiles/lcalc/src/meson.build new file mode 100644 index 00000000000..1d7362aa7b2 --- /dev/null +++ b/subprojects/packagefiles/lcalc/src/meson.build @@ -0,0 +1,18 @@ +conf = configuration_data() +conf.set('PRECISION_DOUBLE', 1) # TODO: add more precision options +# TODO: add more data? + +# Store this in "src" as opposed to "src/libLfunction" because +# doing the latter causes the other files in src/libLfunction +# to prefer the source-tree version of config.h from the dist +# tarball over the one in the build-tree that the user generates. +config_h = configure_file( + output : 'config.h', + configuration : conf, + install_dir : get_option('includedir'), + install : true) +config_h_dep = declare_dependency( + include_directories : include_directories('.')) + +subdir('libLfunction') +#subdir('lcalc') From e509b118a5048189d3868ffd1cf7204efedc56ba Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 27 Feb 2024 14:38:34 +0000 Subject: [PATCH 138/229] Add script for updating Python sources and extension data in meson build files --- generate-meson.py | 198 ------------------------------------------ tools/update-meson.py | 127 +++++++++++++++++++++++++++ 2 files changed, 127 insertions(+), 198 deletions(-) delete mode 100644 generate-meson.py create mode 100644 tools/update-meson.py diff --git a/generate-meson.py b/generate-meson.py deleted file mode 100644 index 1bcb7fc3871..00000000000 --- a/generate-meson.py +++ /dev/null @@ -1,198 +0,0 @@ -# Small script that generates a meson.build file in the given folder. -# The generated build file contains all python files as `install_sources` and all cython files as `extension_module` - -import argparse -import sys -from pathlib import Path -from types import SimpleNamespace - -parser = argparse.ArgumentParser(description='Generate meson.build file for a given folder.') -parser.add_argument('folder', type=str, nargs='?', default='.', - help='folder for which the meson.build file will be generated') -parser.add_argument('--dry-run', '-n', action='store_true', - help='do not write any files, just print the output') -parser.add_argument('--force', '-f', action='store_true', - help='overwrite existing meson.build file') - -args = parser.parse_args() - -def run(folder: Path): - dry_run = args.dry_run - force = args.force - - if not folder.is_dir(): - print(f'Error: {folder} is not a directory') - return - folder_rel_to_src = folder.relative_to('src') - - python_files = sorted(list(folder.glob('*.py')) + list(folder.glob('*.pxd')) + list(folder.glob('*.h'))) - cython_files = sorted(list(folder.glob('*.pyx'))) - - - if not python_files and not cython_files: - print(f'Error: {folder} does not contain any python or cython files') - return - - def get_metadata(path: Path): - with open(path, 'r') as file: - metadata = SimpleNamespace() - metadata.path = path - metadata.libraries = [] - for line in file: - if line.startswith('# distutils: libraries ='): - libraries = line.split('libraries =')[1].strip().split() - libraries = [ - library - .replace('ARB_LIBRARY', 'arb') - .replace('NTL_LIBRARIES', 'ntl') - .replace('SINGULAR_LIBRARIES', 'singular') - .replace('LINBOX_LIBRARIES', 'linbox') - .replace('FFLASFFPACK_LIBRARIES', 'fflas') - .replace('GSL_LIBRARIES', 'gsl') - .replace('M4RI_LIBRARIES', 'm4ri') - .replace('GDLIB_LIBRARIES', 'gd') - .replace('LIBPNG_LIBRARIES', 'png') - .replace('CBLAS_LIBRARIES', 'cblas') - .replace('ZLIB_LIBRARIES', 'zlib') - .replace('Lfunction', 'lfunction') - for library in libraries] - try: - libraries.remove('CYGWIN_SQLITE3_LIBS') - except ValueError: - pass - metadata.libraries += libraries - - metadata.inc_dirs = [] - c_file = path.with_suffix('.c') - cpp_file = path.with_suffix('.cpp') - if cpp_file.exists(): - metadata.is_cpp = True - c_file = cpp_file - else: - metadata.is_cpp = False - if c_file.exists(): - metadata.not_yet_on_conda = False - with open(c_file, 'r') as c_file: - contents = c_file.read() - known_inc_dirs = { - 'sage/cpython/': 'inc_cpython', - 'sage/rings': 'inc_rings', - 'sage/rings/finite_rings': 'inc_rings_finite', - 'sage/libs/flint': 'inc_flint', - 'sage/libs/gsl': 'inc_gsl', - 'sage/libs/ntl': 'inc_ntl', - 'sage/libs/arb': 'inc_arb', - 'sage/data_structures': 'inc_data_structures', - 'sage/ext/': 'inc_ext', - 'numpy/core/include/': 'inc_numpy', - 'sage/symbolic/ginac/': 'inc_ginac', - 'sage/symbolic/pynac_wrap.h': 'inc_pynac', - 'sage/groups/perm_gps/partn_ref2/': 'inc_partn_ref2', - 'sage/ext/interpreters/': 'inc_interpreters', - } - for known_inc_dir in known_inc_dirs: - if known_inc_dir in contents: - metadata.inc_dirs.append(known_inc_dirs[known_inc_dir]) - known_libs = { - 'cypari2/': 'cypari2', - 'cysignals/': 'cysignals', - '/gmp.h': 'gmp', - '/iml.h': 'iml', - '/m4ri/': 'm4ri', - '/pari/': 'pari', - '/flint/': 'flint', - '/fflas-ffpack/': 'fflas', - '/givaro/': 'givaro', - '/gmp++/': 'gmpxx', - '/linbox/': 'linbox', - '/gsl/': 'gsl', - 'mpfr.h': 'mpfr', - 'sage/symbolic/ginac/': 'ginac', - 'arb.h': 'arb', - 'mpfi.h': 'mpfi', - 'mpc.h': 'mpc', - 'gmpy2/': 'gmpy2', - } - for known_lib in known_libs: - if known_lib in contents: - metadata.libraries.append(known_libs[known_lib]) - else: - metadata.not_yet_on_conda = metadata.is_cpp is False - - return metadata - - cython_files = [get_metadata(file) for file in cython_files] - cython_c_files = [file for file in cython_files if not file.is_cpp] - cython_cpp_files = [file for file in cython_files if file.is_cpp] - all_libraries = sorted(set(library for file in cython_files for library in file.libraries) | {'gmp'}) - all_inc_dirs = sorted(set(inc_dir for file in cython_files for inc_dir in file.inc_dirs)) - subdirs = sorted(list(folder.glob('*/'))) - - meson_build_path = folder / 'meson.build' - if not dry_run and not force and meson_build_path.exists(): - print(f'Error: {meson_build_path} already exists, use --force to overwrite') - return - - with open(meson_build_path, 'w') if not dry_run else sys.stdout as meson_build: - meson_build.write('py.install_sources(\n') - for file in python_files: - meson_build.write(f" '{file.name}',\n") - meson_build.write(f" subdir: '{folder_rel_to_src}',\n") - meson_build.write(')\n') - - if cython_c_files: - meson_build.write('\n') - meson_build.write('extension_data = {\n') - for file in cython_c_files: - if file.not_yet_on_conda: - meson_build.write(f" # '{file.path.stem}': files('{file.path.name}'), # not yet on conda\n") - else: - meson_build.write(f" '{file.path.stem}': files('{file.path.name}'),\n") - meson_build.write('}\n\n') - - meson_build.write('foreach name, pyx : extension_data\n') - meson_build.write(" py.extension_module(name,\n") - meson_build.write(" sources: pyx,\n") - meson_build.write(f" subdir: '{folder_rel_to_src}',\n") - meson_build.write(' install: true,\n') - meson_build.write(f" include_directories: [{', '.join(all_inc_dirs)}],\n") - meson_build.write(f" dependencies: [py_dep{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") - meson_build.write(' )\n') - meson_build.write('endforeach\n') - - if cython_cpp_files: - meson_build.write('\n') - meson_build.write('extension_data_cpp = {\n') - for file in cython_cpp_files: - if file.not_yet_on_conda: - meson_build.write(f" # '{file.path.stem}': files('{file.path.name}'), # not yet on conda\n") - else: - meson_build.write(f" '{file.path.stem}': files('{file.path.name}'),\n") - meson_build.write('}\n\n') - - meson_build.write('foreach name, pyx : extension_data_cpp\n') - meson_build.write(" py.extension_module(name,\n") - meson_build.write(" sources: pyx,\n") - meson_build.write(f" subdir: '{folder_rel_to_src}',\n") - meson_build.write(' install: true,\n') - meson_build.write(' override_options : [\'cython_language=cpp\'],\n') - meson_build.write(f" include_directories: [{', '.join(all_inc_dirs)}],\n") - meson_build.write(f" dependencies: [py_dep{', ' if all_libraries else ''}{', '.join(all_libraries)}],\n") - meson_build.write(' )\n') - meson_build.write('endforeach\n') - - meson_build.write('\n') - for subdir in subdirs: - if subdir.name.startswith('_') or subdir.name.startswith('.'): - continue - if not list(subdir.glob('*.py*')): - continue - - if not list(subdir.glob('*.pyx')): - meson_build.write(f"install_subdir('{subdir.name}', install_dir: sage_install_dir / '{folder_rel_to_src.relative_to('sage')}')\n") - else: - meson_build.write(f"subdir('{subdir.name}')\n") - run(subdir) - -folder = Path(args.folder) -run(folder) diff --git a/tools/update-meson.py b/tools/update-meson.py new file mode 100644 index 00000000000..49578007804 --- /dev/null +++ b/tools/update-meson.py @@ -0,0 +1,127 @@ +import argparse +from pathlib import Path + +from mesonbuild.ast import AstVisitor +from mesonbuild.ast.interpreter import MethodNode +from mesonbuild.mparser import AssignmentNode, BaseNode, DictNode, SymbolNode +from mesonbuild.rewriter import ( + ArgumentNode, + ArrayNode, + BaseStringNode, + FunctionNode, + Rewriter, + StringNode, + Token, +) + +# Get target directory from command line arguments +parser = argparse.ArgumentParser() +parser.add_argument("sourcedir", help="Source directory") +options = parser.parse_args() + + +class AstPython(AstVisitor): + install_sources_calls: list[MethodNode] = [] + extension_data: list[AssignmentNode] = [] + + def visit_MethodNode(self, node: MethodNode) -> None: + if node.name.value == "install_sources": + self.install_sources_calls += [node] + return super().visit_MethodNode(node) + + def visit_AssignmentNode(self, node: AssignmentNode) -> None: + if node.var_name.value in ["extension_data", "extension_data_cpp"]: + self.extension_data += [node] + return super().visit_AssignmentNode(node) + + +# Utility function to get a list of the sources from a node +def arg_list_from_node(n): + args = [] + if isinstance(n, FunctionNode) or isinstance(n, MethodNode): + args = list(n.args.arguments) + # if 'func_name' in n and n.func_name.value in BUILD_TARGET_FUNCTIONS: + # args.pop(0) + elif isinstance(n, ArrayNode): + args = n.args.arguments + elif isinstance(n, ArgumentNode): + args = n.arguments + return args + +def _symbol(val: str) -> SymbolNode: + return SymbolNode(Token('', '', 0, 0, 0, (0, 0), val)) + + +def add_python_sources(self: Rewriter, visitor: AstPython): + for target in visitor.install_sources_calls: + # Generate the current source list + src_list: list[str] = [] + for arg in arg_list_from_node(target): + if isinstance(arg, BaseStringNode): + src_list += [arg.value] + + folder = Path(target.filename).parent + python_files = sorted( + list(folder.glob("*.py")) + ) # + list(folder.glob('*.pxd')) + list(folder.glob('*.h'))) + + to_append: list[StringNode] = [] + for file in python_files: + file_name = file.name + if file_name == "__init__.py": + # We don't want to add __init__.py files + continue + if file_name in src_list: + continue + token = Token("string", target.filename, 0, 0, 0, None, file_name) + to_append += [StringNode(token)] + + # Append to the AST at the right place + target.args.arguments = sorted( + target.args.arguments + to_append, key=lambda x: x.value + ) + + # Mark the node as modified + if target not in self.modified_nodes: + self.modified_nodes += [target] + + ext_data: dict[Path, list[str]] = {} + for target in visitor.extension_data: + folder = Path(target.filename).parent + # Generate the current source dict + src_list: dict[str, BaseNode] = {} + if isinstance(target.value, DictNode): + src_list.update({k.value: v for k, v in target.value.args.kwargs.items()}) + ext_data.setdefault(folder, []) + ext_data[folder] += src_list.keys() + + for target in visitor.extension_data: + if target.var_name.value != "extension_data": + continue + folder = Path(target.filename).parent + src_list = ext_data[folder] + + cython_files = sorted(list(folder.glob("*.pyx"))) + for file in cython_files: + file_name = file.stem + if file_name in src_list: + continue + token = Token("string", target.filename, 0, 0, 0, None, file_name) + arg = ArgumentNode(Token("", target.filename, 0, 0, 0, None, "[]")) + arg.append( + StringNode(Token("string", target.filename, 0, 0, 0, None, file.name)) + ) + func = FunctionNode(_symbol("files"), _symbol("("), arg, _symbol(")")) + target.value.args.kwargs.update({StringNode(token): func}) + if target not in self.modified_nodes: + self.modified_nodes += [target] + + +Rewriter.process_add_python_sources = add_python_sources +rewriter = Rewriter(options.sourcedir) +visitor = AstPython() +rewriter.interpreter.visitors += [visitor] +rewriter.analyze_meson() +rewriter.process_add_python_sources(visitor) +rewriter.apply_changes() +rewriter.print_info() From 62bf19f4c174b66552c82209b220ff43eb8e3969 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 27 Feb 2024 15:20:18 +0000 Subject: [PATCH 139/229] Remove unnecessary code for finding include path for Cython modules --- src/meson.build | 14 -------------- 1 file changed, 14 deletions(-) diff --git a/src/meson.build b/src/meson.build index 9dbab81ca37..0c80bcc0ece 100644 --- a/src/meson.build +++ b/src/meson.build @@ -124,20 +124,6 @@ maxima = find_program('maxima', required: true) # Cannot be found via pkg-config ntl = cc.find_library('ntl', required: true) -# It's strange but cython cannot find its own include files -# so we find them ourselves, and add them to the include path -inc_cython = run_command(py, - [ - '-c', - ''' -import Cython -print(Cython.__file__.replace('__init__.py', '')) - '''.strip() - ], - check: true - ).stdout().strip() -add_project_arguments('-I', inc_cython + 'Includes', language : 'cython') - # Meson currently ignores include_directories for Cython modules, so we # have to add them manually. # https://github.com/mesonbuild/meson/issues/9562 From 5e7a899097269c15d6d5022d105eba06262dcfae Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 27 Feb 2024 15:33:09 +0000 Subject: [PATCH 140/229] Improve code for generating interpreters --- .github/workflows/ci-meson.yml | 6 --- src/doc/en/installation/meson.rst | 6 --- src/sage/ext/interpreters/__init__.py | 1 - src/sage/ext/interpreters/meson.build | 30 ------------ src/sage/ext/meson.build | 68 +++++++++++++++++++++------ 5 files changed, 54 insertions(+), 57 deletions(-) delete mode 100644 src/sage/ext/interpreters/__init__.py delete mode 100644 src/sage/ext/interpreters/meson.build diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 279fc9d1365..d3235fa9d64 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -66,12 +66,6 @@ jobs: conda info conda list - - name: Bootstrap - shell: bash -l {0} - run: python -m sage_setup.autogen.interpreters src/sage/ext/interpreters - env: - PYTHONPATH: src - - name: Build shell: bash -l {0} run: | diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index d2179bf8fe2..d48e9403231 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -27,12 +27,6 @@ Alternatively, install all build requirements as described in section ``rm src/**/*.so`` or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done``. Also uninstall the 'old' sage packages with ``pip uninstall sage-conf sage-setup sagemath-standard``. -Generate a few files that are needed for the build process:: - - ```bash - python -m sage_setup.autogen.interpreters src/sage/ext/interpreters - ``` - To compile and install the project in editable install, just use:: ```bash diff --git a/src/sage/ext/interpreters/__init__.py b/src/sage/ext/interpreters/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext/interpreters/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build deleted file mode 100644 index 3dc6a9e3064..00000000000 --- a/src/sage/ext/interpreters/meson.build +++ /dev/null @@ -1,30 +0,0 @@ -py.install_sources( - 'all.py', - 'wrapper_cc.pxd', - 'wrapper_cdf.pxd', - 'wrapper_el.pxd', - 'wrapper_py.pxd', - 'wrapper_rdf.pxd', - 'wrapper_rr.pxd', - subdir : 'sage/ext/interpreters' -) - -extension_data = { - 'wrapper_cc' : files('wrapper_cc.pyx'), - 'wrapper_cdf' : files('wrapper_cdf.pyx'), - 'wrapper_el' : files('wrapper_el.pyx'), - 'wrapper_py' : files('wrapper_py.pyx'), - 'wrapper_rdf' : files('wrapper_rdf.pyx'), - 'wrapper_rr' : files('wrapper_rr.pyx') -} - -foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/ext/interpreters', - install: true, - include_directories: [inc_cpython, inc_ext, inc_interpreters, inc_rings, inc_src], - dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], - ) -endforeach - diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index fdeecdc9318..53aa479c12d 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -30,45 +30,85 @@ endforeach interpreters = custom_target( 'sage.ext.interpreters', - output: 'all.py', + output: [ + 'all.py', + 'wrapper_cc.pxd', + 'wrapper_cdf.pxd', + 'wrapper_el.pxd', + 'wrapper_py.pxd', + 'wrapper_rdf.pxd', + 'wrapper_rr.pxd', + 'wrapper_cc.pyx', + 'wrapper_cdf.pyx', + 'wrapper_el.pyx', + 'wrapper_py.pyx', + 'wrapper_rdf.pyx', + 'wrapper_rr.pyx', + ], input: '../../sage_setup/autogen/interpreters/__init__.py', - command: [py, '-m', 'sage_setup.autogen.interpreters', meson.current_source_dir() / 'interpreters'], - # This is actually against the Meson philosophy, which does not like in-source builds. - # So normally you would do something like the following - # however, this we currently cannot pass the generated files as sources to install_sources - # properly fixing this is left for a follow-up - # command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], + command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..'], + # Manually install the generated files instead of using install_sources + # this is a workaround for https://github.com/mesonbuild/meson/issues/7372 + install: true, + install_dir: py.get_install_dir() / 'sage/ext/interpreters', + install_tag: 'python-runtime', ) -# Manually create header files, which otherwise is not found +# Use this once https://github.com/mesonbuild/meson/issues/7372 is fixed +#foreach file : interpreters.to_list() +# py.install_sources( +# file.full_path(), +# subdir : 'sage/ext/interpreters' +# ) +#endforeach + +extension_data = { + 'wrapper_cc' : interpreters[7], + 'wrapper_cdf' : interpreters[8], + 'wrapper_el' : interpreters[9], + 'wrapper_py' : interpreters[10], + 'wrapper_rdf' : interpreters[11], + 'wrapper_rr' : interpreters[12], +} + +# Manually create header files, which otherwise are not found wrapper_el_header = custom_target( 'wrapper_el.h', output : 'wrapper_el.h', - input : ['interpreters/wrapper_el.pyx', interpreters], + input : [interpreters[9], interpreters], command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) wrapper_cc_header = custom_target( 'wrapper_cc.h', output : 'wrapper_cc.h', - input : ['interpreters/wrapper_cc.pyx', interpreters], + input : [interpreters[7], interpreters], command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) wrapper_cdf_header = custom_target( 'wrapper_cdf.h', output : 'wrapper_cdf.h', - input : ['interpreters/wrapper_cdf.pyx', interpreters], + input : [interpreters[8], interpreters], command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) wrapper_rr_header = custom_target( 'wrapper_rr.h', output : 'wrapper_rr.h', - input : ['interpreters/wrapper_rr.pyx', interpreters], + input : [interpreters[12], interpreters], command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], ) interpreters_dep = declare_dependency( - sources: [interpreters, wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], + sources: [wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], ) -subdir('interpreters') + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/ext/interpreters', + install: true, + include_directories: [inc_cpython, inc_ext, inc_interpreters, inc_rings, inc_src], + dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], + ) +endforeach From d129c03d605d1301d30db2ec5ad8a124d1db819f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 27 Feb 2024 15:36:40 +0000 Subject: [PATCH 141/229] Update CI workflow to use lock environment file --- .github/workflows/ci-meson.yml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index d3235fa9d64..ff810052bf5 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -34,9 +34,6 @@ jobs: env: GH_TOKEN: ${{ github.token }} - - name: Create conda environment files - run: ./bootstrap-conda - - name: Cache conda packages uses: actions/cache@v3 with: @@ -58,7 +55,7 @@ jobs: channels: conda-forge channel-priority: true activate-environment: sage - environment-file: src/environment-${{ matrix.python }}.yml + environment-file: src/environment-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && 'macos' || 'linux' }}.yml - name: Print Conda environment shell: bash -l {0} From 434225cd8c9e8e183598008fb61cb9cb191cc0c3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 27 Feb 2024 15:37:05 +0000 Subject: [PATCH 142/229] Remove unnecessary arb include directory in meson.build files --- grayskull | 1 + meson | 1 + src/sage/libs/arb/meson.build | 2 +- src/sage/matrix/meson.build | 4 ++-- src/sage/rings/meson.build | 4 ++-- src/sage/rings/number_field/meson.build | 4 ++-- src/sage/rings/polynomial/meson.build | 4 ++-- 7 files changed, 11 insertions(+), 9 deletions(-) create mode 160000 grayskull create mode 160000 meson diff --git a/grayskull b/grayskull new file mode 160000 index 00000000000..5e74f1daa33 --- /dev/null +++ b/grayskull @@ -0,0 +1 @@ +Subproject commit 5e74f1daa33168642351563f5d73110e09dbd689 diff --git a/meson b/meson new file mode 160000 index 00000000000..5fdf7d7d8ca --- /dev/null +++ b/meson @@ -0,0 +1 @@ +Subproject commit 5fdf7d7d8caebb66f96f515c954182015caad492 diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index 36da5a1cc6c..8c6f0375b33 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -28,7 +28,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/libs/arb', install: true, - include_directories: [inc_arb, inc_cpython, inc_flint, inc_rings], + include_directories: [inc_cpython, inc_flint, inc_rings], dependencies: [py_dep, flint, gmp, mpfr], ) endforeach diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 18a51f2f28b..311ba17592b 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -69,7 +69,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/matrix', install: true, - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], dependencies: dependencies, ) endforeach @@ -93,7 +93,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/matrix', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], dependencies: [py_dep, blas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], ) endforeach diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 3146d4ddaf4..114007def84 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -129,7 +129,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings', install: true, - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], ) endforeach @@ -148,7 +148,7 @@ foreach name, pyx : extension_data_cpp install: true, cpp_args: ['-DUSE_THREADS=1','-DTHREAD_STACK_SIZE=4096'], override_options : ['cython_language=cpp'], - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], ) endforeach diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index a417e2f2b0d..f233e51632c 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -41,7 +41,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/number_field', install: true, - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], ) endforeach @@ -57,7 +57,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/rings/number_field', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index ff859284f88..381a76642d9 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -96,7 +96,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/rings/polynomial', install: true, - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], dependencies: [py_dep, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], ) endforeach @@ -121,7 +121,7 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/rings/polynomial', install: true, override_options : ['cython_language=cpp'], - include_directories: [inc_arb, inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], dependencies: [py_dep, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari, singular], ) endforeach From 3fbe6a332acc8367d1e04fbde4555949128ebb1d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 28 Feb 2024 08:15:19 +0000 Subject: [PATCH 143/229] add meson to conda lock file --- src/environment-3.10-linux.yml | 12 +++++++----- src/environment-3.10-macos.yml | 10 ++++++---- src/environment-3.11-linux.yml | 12 +++++++----- src/environment-3.11-macos.yml | 10 ++++++---- src/environment-3.9-linux.yml | 12 +++++++----- src/environment-3.9-macos.yml | 10 ++++++---- 6 files changed, 39 insertions(+), 27 deletions(-) diff --git a/src/environment-3.10-linux.yml b/src/environment-3.10-linux.yml index 201bf1c8492..5251be1d9a5 100644 --- a/src/environment-3.10-linux.yml +++ b/src/environment-3.10-linux.yml @@ -361,10 +361,11 @@ dependencies: - libxkbcommon=1.6.0=h5d7e998_0 - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - memory-allocator=0.1.3=py310h2372a71_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pillow=10.1.0=py310h01dd4db_0 - - pip=23.3.2=pyhd8ed1ab_0 + - meson=1.3.2=pyhd8ed1ab_0 + - overrides=7.7.0=pyhd8ed1ab_0 + - pexpect=4.9.0=pyhd8ed1ab_0 + - pillow=10.2.0=py310h01dd4db_0 + - pip=24.0=pyhd8ed1ab_0 - pplpy=0.8.9=py310h28f6eb6_0 - primecountpy=0.1.0=py310hd41b1e2_4 - prompt-toolkit=3.0.42=pyha770c72_0 @@ -400,7 +401,8 @@ dependencies: - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - liblapacke=3.9.0=20_linux64_openblas - - numpy=1.26.2=py310hb13e2d6_0 + - meson-python=0.15.0=pyh0c530f3_0 + - numpy=1.26.4=py310hb13e2d6_0 - prompt_toolkit=3.0.42=hd8ed1ab_0 - pyqt5-sip=12.12.2=py310hc6cd4ac_5 - requests=2.31.0=pyhd8ed1ab_0 diff --git a/src/environment-3.10-macos.yml b/src/environment-3.10-macos.yml index ba31dab449e..41e79e3abb6 100644 --- a/src/environment-3.10-macos.yml +++ b/src/environment-3.10-macos.yml @@ -299,9 +299,10 @@ dependencies: - liblapack=3.9.0=20_osx64_openblas - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - memory-allocator=0.1.3=py310h6729b98_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pip=23.3.2=pyhd8ed1ab_0 + - meson=1.3.2=pyhd8ed1ab_0 + - overrides=7.7.0=pyhd8ed1ab_0 + - pexpect=4.9.0=pyhd8ed1ab_0 + - pip=24.0=pyhd8ed1ab_0 - pplpy=0.8.9=py310hd89f7aa_0 - primecountpy=0.1.0=py310h88cfcbd_4 - prompt-toolkit=3.0.42=pyha770c72_0 @@ -333,7 +334,8 @@ dependencies: - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - liblapacke=3.9.0=20_osx64_openblas - - numpy=1.26.2=py310h2a7ecf2_0 + - meson-python=0.15.0=pyh0c530f3_0 + - numpy=1.26.4=py310h4bfa8fc_0 - pango=1.50.14=h19c1c8a_2 - prompt_toolkit=3.0.42=hd8ed1ab_0 - pyobjc-framework-cocoa=10.1=py310h3674b6a_0 diff --git a/src/environment-3.11-linux.yml b/src/environment-3.11-linux.yml index 8439b8e51db..a5ce24f1437 100644 --- a/src/environment-3.11-linux.yml +++ b/src/environment-3.11-linux.yml @@ -360,10 +360,11 @@ dependencies: - libxkbcommon=1.6.0=h5d7e998_0 - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - memory-allocator=0.1.3=py311h459d7ec_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pillow=10.1.0=py311ha6c5da5_0 - - pip=23.3.2=pyhd8ed1ab_0 + - meson=1.3.2=pyhd8ed1ab_0 + - overrides=7.7.0=pyhd8ed1ab_0 + - pexpect=4.9.0=pyhd8ed1ab_0 + - pillow=10.2.0=py311ha6c5da5_0 + - pip=24.0=pyhd8ed1ab_0 - pplpy=0.8.9=py311h85abca9_0 - primecountpy=0.1.0=py311h9547e67_4 - prompt-toolkit=3.0.42=pyha770c72_0 @@ -399,7 +400,8 @@ dependencies: - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - liblapacke=3.9.0=20_linux64_openblas - - numpy=1.26.2=py311h64a7726_0 + - meson-python=0.15.0=pyh0c530f3_0 + - numpy=1.26.4=py311h64a7726_0 - prompt_toolkit=3.0.42=hd8ed1ab_0 - pyqt5-sip=12.12.2=py311hb755f60_5 - requests=2.31.0=pyhd8ed1ab_0 diff --git a/src/environment-3.11-macos.yml b/src/environment-3.11-macos.yml index 86acb5faf05..379761c6a34 100644 --- a/src/environment-3.11-macos.yml +++ b/src/environment-3.11-macos.yml @@ -298,9 +298,10 @@ dependencies: - liblapack=3.9.0=20_osx64_openblas - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - memory-allocator=0.1.3=py311h2725bcf_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pip=23.3.2=pyhd8ed1ab_0 + - meson=1.3.2=pyhd8ed1ab_0 + - overrides=7.7.0=pyhd8ed1ab_0 + - pexpect=4.9.0=pyhd8ed1ab_0 + - pip=24.0=pyhd8ed1ab_0 - pplpy=0.8.9=py311h7355a2a_0 - primecountpy=0.1.0=py311h5fe6e05_4 - prompt-toolkit=3.0.42=pyha770c72_0 @@ -332,7 +333,8 @@ dependencies: - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - liblapacke=3.9.0=20_osx64_openblas - - numpy=1.26.2=py311h93c810c_0 + - meson-python=0.15.0=pyh0c530f3_0 + - numpy=1.26.4=py311hc43a94b_0 - pango=1.50.14=h19c1c8a_2 - prompt_toolkit=3.0.42=hd8ed1ab_0 - pyobjc-framework-cocoa=10.1=py311h9b70068_0 diff --git a/src/environment-3.9-linux.yml b/src/environment-3.9-linux.yml index 70d7997cd8a..bb1994af9d3 100644 --- a/src/environment-3.9-linux.yml +++ b/src/environment-3.9-linux.yml @@ -361,10 +361,11 @@ dependencies: - libxkbcommon=1.6.0=h5d7e998_0 - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - memory-allocator=0.1.3=py39hd1e30aa_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pillow=10.1.0=py39had0adad_0 - - pip=23.3.2=pyhd8ed1ab_0 + - meson=1.3.2=pyhd8ed1ab_0 + - overrides=7.7.0=pyhd8ed1ab_0 + - pexpect=4.9.0=pyhd8ed1ab_0 + - pillow=10.2.0=py39had0adad_0 + - pip=24.0=pyhd8ed1ab_0 - pplpy=0.8.9=py39hba3e9e5_0 - primecountpy=0.1.0=py39h7633fee_4 - prompt-toolkit=3.0.42=pyha770c72_0 @@ -400,7 +401,8 @@ dependencies: - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - liblapacke=3.9.0=20_linux64_openblas - - numpy=1.26.2=py39h474f0d3_0 + - meson-python=0.15.0=pyh0c530f3_0 + - numpy=1.26.4=py39h474f0d3_0 - prompt_toolkit=3.0.42=hd8ed1ab_0 - pyqt5-sip=12.12.2=py39h3d6467e_5 - requests=2.31.0=pyhd8ed1ab_0 diff --git a/src/environment-3.9-macos.yml b/src/environment-3.9-macos.yml index c924d013cbc..04874958b09 100644 --- a/src/environment-3.9-macos.yml +++ b/src/environment-3.9-macos.yml @@ -299,9 +299,10 @@ dependencies: - liblapack=3.9.0=20_osx64_openblas - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - memory-allocator=0.1.3=py39hdc70f33_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pip=23.3.2=pyhd8ed1ab_0 + - meson=1.3.2=pyhd8ed1ab_0 + - overrides=7.7.0=pyhd8ed1ab_0 + - pexpect=4.9.0=pyhd8ed1ab_0 + - pip=24.0=pyhd8ed1ab_0 - pplpy=0.8.9=py39h248ee18_0 - primecountpy=0.1.0=py39h8ee36c8_4 - prompt-toolkit=3.0.42=pyha770c72_0 @@ -333,7 +334,8 @@ dependencies: - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - liblapacke=3.9.0=20_osx64_openblas - - numpy=1.26.2=py39h14c6d2e_0 + - meson-python=0.15.0=pyh0c530f3_0 + - numpy=1.26.4=py39h28c39a1_0 - pango=1.50.14=h19c1c8a_2 - prompt_toolkit=3.0.42=hd8ed1ab_0 - pyobjc-framework-cocoa=10.1=py39h8602b6b_0 From 8d1acf87a8caee6c70d9709694cf2945b55ddeb6 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 28 Feb 2024 08:46:04 +0000 Subject: [PATCH 144/229] Remove unnecessary interpreters include_directories in meson.build files --- src/meson.build | 1 - src/sage/ext/meson.build | 2 +- 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/src/meson.build b/src/meson.build index 0c80bcc0ece..2e7fded9954 100644 --- a/src/meson.build +++ b/src/meson.build @@ -152,7 +152,6 @@ inc_ntl = include_directories('sage/libs/ntl') inc_arb = include_directories('sage/libs/arb') inc_data_structures = include_directories('sage/data_structures') inc_ext = include_directories('sage/ext') -inc_interpreters = include_directories('sage/ext/interpreters') inc_partn_ref2 = include_directories('sage/groups/perm_gps/partn_ref2') inc_src = include_directories('.') diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 53aa479c12d..5824afb5ab7 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -108,7 +108,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/ext/interpreters', install: true, - include_directories: [inc_cpython, inc_ext, inc_interpreters, inc_rings, inc_src], + include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], ) endforeach From e4353083434c70c103e0f8c9fcbb3b2556148a2c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 28 Feb 2024 09:10:23 +0000 Subject: [PATCH 145/229] Fix compilation (arb) --- src/sage/libs/arb/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index 8c6f0375b33..375b45f673c 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -19,7 +19,6 @@ py.install_sources( ) extension_data = { - 'arb_version' : files('arb_version.pyx'), 'arith' : files('arith.pyx') } From c83cc2feaf98764c0b5d9f3360a3343047f05e13 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 28 Feb 2024 09:57:09 +0000 Subject: [PATCH 146/229] try to fix interpreter build --- src/sage/calculus/meson.build | 2 +- src/sage/ext/interpreters/meson.build | 85 +++++++++++++++++++ src/sage/ext/meson.build | 85 +------------------ src/sage/meson.build | 2 +- .../autogen/interpreters/__init__.py | 10 +-- 5 files changed, 92 insertions(+), 92 deletions(-) create mode 100644 src/sage/ext/interpreters/meson.build diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index 54b02a8b899..60ade235702 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -28,7 +28,7 @@ foreach name, pyx : extension_data subdir: 'sage/calculus', install: true, include_directories: [inc_ext, inc_numpy], - dependencies: [py_dep, cysignals, gmp, gsl], + dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep], ) endforeach diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build new file mode 100644 index 00000000000..68d87afef6f --- /dev/null +++ b/src/sage/ext/interpreters/meson.build @@ -0,0 +1,85 @@ + +interpreters = custom_target( + 'sage.ext.interpreters', + output: [ + 'all.py', + 'wrapper_cc.pxd', + 'wrapper_cdf.pxd', + 'wrapper_el.pxd', + 'wrapper_py.pxd', + 'wrapper_rdf.pxd', + 'wrapper_rr.pxd', + 'wrapper_cc.pyx', + 'wrapper_cdf.pyx', + 'wrapper_el.pyx', + 'wrapper_py.pyx', + 'wrapper_rdf.pyx', + 'wrapper_rr.pyx', + ], + input: '../../../sage_setup/autogen/interpreters/__init__.py', + command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], + env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..' / '..'], + # Manually install the generated files instead of using install_sources + # this is a workaround for https://github.com/mesonbuild/meson/issues/7372 + install: true, + install_dir: py.get_install_dir() / 'sage/ext/interpreters', + install_tag: 'python-runtime', +) + +# Use this once https://github.com/mesonbuild/meson/issues/7372 is fixed +#foreach file : interpreters.to_list() +# py.install_sources( +# file.full_path(), +# subdir : 'sage/ext/interpreters' +# ) +#endforeach + +extension_data = { + 'wrapper_cc' : interpreters[7], + 'wrapper_cdf' : interpreters[8], + 'wrapper_el' : interpreters[9], + 'wrapper_py' : interpreters[10], + 'wrapper_rdf' : interpreters[11], + 'wrapper_rr' : interpreters[12], +} + +# Manually create header files, which otherwise are not found +wrapper_el_header = custom_target( + 'wrapper_el.h', + output : 'wrapper_el.h', + input : [interpreters[9], interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) +wrapper_cc_header = custom_target( + 'wrapper_cc.h', + output : 'wrapper_cc.h', + input : [interpreters[7], interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) +wrapper_cdf_header = custom_target( + 'wrapper_cdf.h', + output : 'wrapper_cdf.h', + input : [interpreters[8], interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) +wrapper_rr_header = custom_target( + 'wrapper_rr.h', + output : 'wrapper_rr.h', + input : [interpreters[12], interpreters], + command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], +) + +interpreters_dep = declare_dependency( + sources: [wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], +) + + +foreach name, pyx : extension_data + py.extension_module(name, + sources: pyx, + subdir: 'sage/ext/interpreters', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], + dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], + ) +endforeach diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 5824afb5ab7..7cacc1367d8 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -28,87 +28,4 @@ foreach name, pyx : extension_data ) endforeach -interpreters = custom_target( - 'sage.ext.interpreters', - output: [ - 'all.py', - 'wrapper_cc.pxd', - 'wrapper_cdf.pxd', - 'wrapper_el.pxd', - 'wrapper_py.pxd', - 'wrapper_rdf.pxd', - 'wrapper_rr.pxd', - 'wrapper_cc.pyx', - 'wrapper_cdf.pyx', - 'wrapper_el.pyx', - 'wrapper_py.pyx', - 'wrapper_rdf.pyx', - 'wrapper_rr.pyx', - ], - input: '../../sage_setup/autogen/interpreters/__init__.py', - command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], - env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..'], - # Manually install the generated files instead of using install_sources - # this is a workaround for https://github.com/mesonbuild/meson/issues/7372 - install: true, - install_dir: py.get_install_dir() / 'sage/ext/interpreters', - install_tag: 'python-runtime', -) - -# Use this once https://github.com/mesonbuild/meson/issues/7372 is fixed -#foreach file : interpreters.to_list() -# py.install_sources( -# file.full_path(), -# subdir : 'sage/ext/interpreters' -# ) -#endforeach - -extension_data = { - 'wrapper_cc' : interpreters[7], - 'wrapper_cdf' : interpreters[8], - 'wrapper_el' : interpreters[9], - 'wrapper_py' : interpreters[10], - 'wrapper_rdf' : interpreters[11], - 'wrapper_rr' : interpreters[12], -} - -# Manually create header files, which otherwise are not found -wrapper_el_header = custom_target( - 'wrapper_el.h', - output : 'wrapper_el.h', - input : [interpreters[9], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], -) -wrapper_cc_header = custom_target( - 'wrapper_cc.h', - output : 'wrapper_cc.h', - input : [interpreters[7], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], -) -wrapper_cdf_header = custom_target( - 'wrapper_cdf.h', - output : 'wrapper_cdf.h', - input : [interpreters[8], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], -) -wrapper_rr_header = custom_target( - 'wrapper_rr.h', - output : 'wrapper_rr.h', - input : [interpreters[12], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../')], -) - -interpreters_dep = declare_dependency( - sources: [wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], -) - - -foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/ext/interpreters', - install: true, - include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], - dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], - ) -endforeach +subdir('interpreters') diff --git a/src/sage/meson.build b/src/sage/meson.build index d505ccfecdf..267223db51e 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -97,13 +97,13 @@ subdir('misc') subdir('structure') subdir('algebras') subdir('arith') +subdir('ext') subdir('calculus') subdir('categories') subdir('coding') subdir('combinat') subdir('crypto') subdir('data_structures') -subdir('ext') subdir('functions') subdir('games') subdir('geometry') diff --git a/src/sage_setup/autogen/interpreters/__init__.py b/src/sage_setup/autogen/interpreters/__init__.py index 87dae60bce7..ed4b0c52238 100644 --- a/src/sage_setup/autogen/interpreters/__init__.py +++ b/src/sage_setup/autogen/interpreters/__init__.py @@ -109,20 +109,18 @@ # that will have to be changed. ##################################################################### -from __future__ import print_function, absolute_import +from __future__ import absolute_import, print_function import os - from os.path import getmtime -from .generator import InterpreterGenerator, AUTOGEN_WARN +from .generator import AUTOGEN_WARN, InterpreterGenerator from .instructions import * from .memory import * from .specs.base import * from .storage import * from .utils import * - # Tuple of (filename_root, extension, method) where filename_root is the # root of the filename to be joined with "_".ext and # method is the name of a get_ method on InterpreterGenerator that returns @@ -197,7 +195,7 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): sage: testdir = tmp_dir() sage: rebuild(testdir, interpreters=['Element', 'Python'], ....: distribution='sagemath-categories') - Building interpreters for fast_callable + Generating interpreters for fast_callable in ... -> First build of interpreters sage: with open(testdir + '/all__sagemath_categories.py') as f: ....: f.readline() @@ -205,7 +203,7 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): """ # This line will show up in "sage -b" (once per upgrade, not every time # you run it). - print("Building interpreters for fast_callable") + print(f"Generating interpreters for fast_callable in {dirname}") if interpreters is None: interpreters = ['CDF', 'Element', 'Python', 'RDF', 'RR', 'CC'] From a1e41c1dd526a1c826b7839cad831b3a0965051c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 28 Feb 2024 10:48:33 +0000 Subject: [PATCH 147/229] More fun with interpreters --- src/sage/calculus/meson.build | 2 +- src/sage/ext/interpreters/meson.build | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index 60ade235702..e11ac5a0a32 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -27,7 +27,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/calculus', install: true, - include_directories: [inc_ext, inc_numpy], + include_directories: [inc_numpy], dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep], ) endforeach diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index 68d87afef6f..fb54f2abe7f 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -71,6 +71,7 @@ wrapper_rr_header = custom_target( interpreters_dep = declare_dependency( sources: [wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], + include_directories : include_directories('.') ) From 0d5f0888ca8156e3933f676ec2bc002aeafdb712 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Wed, 28 Feb 2024 13:55:52 +0000 Subject: [PATCH 148/229] Add build directory as include directory for Cython compilation --- src/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/meson.build b/src/meson.build index 2e7fded9954..69b06d5bef9 100644 --- a/src/meson.build +++ b/src/meson.build @@ -128,6 +128,7 @@ ntl = cc.find_library('ntl', required: true) # have to add them manually. # https://github.com/mesonbuild/meson/issues/9562 add_project_arguments('-I', meson.current_source_dir(), language : 'cython') +add_project_arguments('-I', meson.current_build_dir(), language : 'cython') # Add global compiler flags add_project_arguments('-X auto_pickle=False', language : 'cython') From 765c5b9a0cf52d0a3c06919b18314cdaf96c5f97 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 05:37:31 +0000 Subject: [PATCH 149/229] Don't run pytest on builddir --- src/tox.ini | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/tox.ini b/src/tox.ini index 8e562cced8e..fc157b86d81 100644 --- a/src/tox.ini +++ b/src/tox.ini @@ -290,7 +290,7 @@ exclude = [pytest] python_files = *_test.py -norecursedirs = local prefix venv build pkgs .git src/doc src/bin +norecursedirs = local prefix venv build builddir pkgs .git src/doc src/bin tools addopts = --import-mode importlib doctest_optionflags = NORMALIZE_WHITESPACE ELLIPSIS From 159d3507981f444f2a0fc058a36da52e36529988 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 05:42:44 +0000 Subject: [PATCH 150/229] Restore --config-settings editable_mode=compat in ci-conda --- .github/workflows/ci-conda.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-conda.yml b/.github/workflows/ci-conda.yml index 90e0d6f9da1..1bb08637099 100644 --- a/.github/workflows/ci-conda.yml +++ b/.github/workflows/ci-conda.yml @@ -92,7 +92,7 @@ jobs: run: | # Use --no-deps and pip check below to verify that all necessary dependencies are installed via conda. pip install --no-build-isolation --no-deps -v -v -e ./pkgs/sage-conf ./pkgs/sage-setup - pip install --no-build-isolation --no-deps -v -v -e ./src + pip install --no-build-isolation --no-deps --config-settings editable_mode=compat -v -v -e ./src env: SAGE_NUM_THREADS: 2 From e0364362f06cb458fc762d76c4e8b1e4ab24f768 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 05:47:18 +0000 Subject: [PATCH 151/229] Cleanup workflow --- .github/workflows/ci-meson.yml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index ff810052bf5..8394508c64d 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -1,4 +1,4 @@ -name: Build & Test using Conda (Meson) +name: Build & Test using Meson on: push: @@ -16,13 +16,13 @@ concurrency: jobs: test: - name: Meson - runs-on: ${{ matrix.os }} + name: Conda (${{ matrix.os }}, Python ${{ matrix.python }}) + runs-on: ${{ matrix.os }}-latest strategy: fail-fast: false matrix: - os: [ubuntu-latest, macos-latest] + os: [ubuntu, macos] python: ['3.9', '3.10', '3.11'] steps: @@ -39,7 +39,7 @@ jobs: with: path: ~/conda_pkgs_dir key: - ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11.yml') }} + ${{ runner.os }}-conda-${{ hashFiles('src/environment-3.11-linux.yml') }} - name: Compiler cache uses: hendrikmuhs/ccache-action@v1.2 From 0b2d76f7348b6bfae52e4380a9e375fb0b1d639a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 06:12:24 +0000 Subject: [PATCH 152/229] Ignore module-not-measured error during code coverage collection --- grayskull | 1 + meson | 1 + src/tox.ini | 4 +++- 3 files changed, 5 insertions(+), 1 deletion(-) create mode 160000 grayskull create mode 160000 meson diff --git a/grayskull b/grayskull new file mode 160000 index 00000000000..5e74f1daa33 --- /dev/null +++ b/grayskull @@ -0,0 +1 @@ +Subproject commit 5e74f1daa33168642351563f5d73110e09dbd689 diff --git a/meson b/meson new file mode 160000 index 00000000000..5fdf7d7d8ca --- /dev/null +++ b/meson @@ -0,0 +1 @@ +Subproject commit 5fdf7d7d8caebb66f96f515c954182015caad492 diff --git a/src/tox.ini b/src/tox.ini index 8e562cced8e..31f8d59ebc9 100644 --- a/src/tox.ini +++ b/src/tox.ini @@ -298,7 +298,9 @@ doctest_optionflags = NORMALIZE_WHITESPACE ELLIPSIS source = sage concurrency = multiprocessing data_file = .coverage/.coverage -disable_warnings = no-data-collected +disable_warnings = + no-data-collected + module-not-measured [coverage:report] ignore_errors = True From 8c21bc5309ac31475b74a46528fe93e8efd6cd89 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 06:15:49 +0000 Subject: [PATCH 153/229] Remove acidentially commited submodules --- grayskull | 1 - meson | 1 - 2 files changed, 2 deletions(-) delete mode 160000 grayskull delete mode 160000 meson diff --git a/grayskull b/grayskull deleted file mode 160000 index 5e74f1daa33..00000000000 --- a/grayskull +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 5e74f1daa33168642351563f5d73110e09dbd689 diff --git a/meson b/meson deleted file mode 160000 index 5fdf7d7d8ca..00000000000 --- a/meson +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 5fdf7d7d8caebb66f96f515c954182015caad492 From 16d823407e72be99a320c3bc4b1859e700b4e4d8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 06:17:32 +0000 Subject: [PATCH 154/229] Move compilers to src/meson.build --- meson.build | 5 ----- src/meson.build | 6 +++++- 2 files changed, 5 insertions(+), 6 deletions(-) diff --git a/meson.build b/meson.build index f00294b7e2f..7f42573fdfa 100644 --- a/meson.build +++ b/meson.build @@ -11,11 +11,6 @@ py_module = import('python') py = py_module.find_installation(pure: false) py_dep = py.dependency() -# Compilers -cc = meson.get_compiler('c') -cpp = meson.get_compiler('cpp') -cython = meson.get_compiler('cython') - # Additional targets py_with_pytest = py_module.find_installation(required: false, modules: ['pytest']) if py_with_pytest.found() diff --git a/src/meson.build b/src/meson.build index 69b06d5bef9..0730aa1a53e 100644 --- a/src/meson.build +++ b/src/meson.build @@ -1,5 +1,9 @@ -# Setup dependencies that are needed by many modules +# Compilers +cc = meson.get_compiler('c') +cpp = meson.get_compiler('cpp') +cython = meson.get_compiler('cython') +# Setup dependencies that are needed by many modules inc_numpy = run_command(py, [ '-c', From 11cb41c1a0b82bf3faf78fdeb8856b87216f09cc Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 06:22:16 +0000 Subject: [PATCH 155/229] Remove acidentially commited submodules --- grayskull | 1 - meson | 1 - 2 files changed, 2 deletions(-) delete mode 160000 grayskull delete mode 160000 meson diff --git a/grayskull b/grayskull deleted file mode 160000 index 5e74f1daa33..00000000000 --- a/grayskull +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 5e74f1daa33168642351563f5d73110e09dbd689 diff --git a/meson b/meson deleted file mode 160000 index 5fdf7d7d8ca..00000000000 --- a/meson +++ /dev/null @@ -1 +0,0 @@ -Subproject commit 5fdf7d7d8caebb66f96f515c954182015caad492 From 861506ad5491f461d79c4c335af24e25d23fbd54 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 11:45:33 +0000 Subject: [PATCH 156/229] Fix tests --- src/sage_setup/autogen/interpreters/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage_setup/autogen/interpreters/__init__.py b/src/sage_setup/autogen/interpreters/__init__.py index ed4b0c52238..95cb3da5196 100644 --- a/src/sage_setup/autogen/interpreters/__init__.py +++ b/src/sage_setup/autogen/interpreters/__init__.py @@ -184,7 +184,7 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): sage: from sage_setup.autogen.interpreters import * sage: testdir = tmp_dir() sage: rebuild(testdir) - Building interpreters for fast_callable + Generating interpreters for fast_callable in ... -> First build of interpreters sage: with open(testdir + '/wrapper_el.pyx') as f: ....: f.readline() From 5d6295087726615ca3509f64e3079de4f0db28dc Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 11:50:47 +0000 Subject: [PATCH 157/229] Try installing the generated init file to fix cython module name issues --- src/sage/ext/interpreters/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index fb54f2abe7f..e0dd19577ac 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -15,6 +15,7 @@ interpreters = custom_target( 'wrapper_py.pyx', 'wrapper_rdf.pyx', 'wrapper_rr.pyx', + '__init__.py', ], input: '../../../sage_setup/autogen/interpreters/__init__.py', command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], From 757932f66f14ff366b447f2b32515bd9e986076e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 12:09:03 +0000 Subject: [PATCH 158/229] Generate init file for interpreters --- src/sage_setup/autogen/interpreters/__init__.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/sage_setup/autogen/interpreters/__init__.py b/src/sage_setup/autogen/interpreters/__init__.py index 95cb3da5196..dd491972d91 100644 --- a/src/sage_setup/autogen/interpreters/__init__.py +++ b/src/sage_setup/autogen/interpreters/__init__.py @@ -257,3 +257,6 @@ class NeedToRebuild(Exception): with open(os.path.join(dirname, all_py), 'w') as f: f.write("# " + AUTOGEN_WARN) + + with open(os.path.join(dirname, '__init__.py'), 'w') as f: + f.write("# " + AUTOGEN_WARN) From 73c840a49bf0bd0cf7a9d64e80fac2f91bfc46a2 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 12:11:46 +0000 Subject: [PATCH 159/229] Improve fflas dependency in meson.build --- src/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/meson.build b/src/meson.build index 0730aa1a53e..1ec55af1591 100644 --- a/src/meson.build +++ b/src/meson.build @@ -105,7 +105,7 @@ glpk = cc.find_library('glpk') ppl = cc.find_library('ppl') gmpxx = cc.find_library('gmpxx') readline = cc.find_library('readline') -fflas = dependency(['fflas-ffpack']) +fflas = dependency('fflas-ffpack') fplll = dependency('fplll') givaro = cc.find_library('givaro') linbox = dependency('linbox', required: false) From 3819a6e7537fa4ffc9a32b1b1c7e54c36355a89b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 12:12:35 +0000 Subject: [PATCH 160/229] Add fallback for gap --- src/meson.build | 8 ++++++-- subprojects/gap.wrap | 6 ++++++ subprojects/packagefiles/gap/meson.build | 8 ++++++++ 3 files changed, 20 insertions(+), 2 deletions(-) create mode 100644 subprojects/gap.wrap create mode 100644 subprojects/packagefiles/gap/meson.build diff --git a/src/meson.build b/src/meson.build index 1ec55af1591..d0a742d8f55 100644 --- a/src/meson.build +++ b/src/meson.build @@ -118,8 +118,12 @@ homfly = cc.find_library('homfly') mpc = cc.find_library('mpc') mpfi = cc.find_library('mpfi') mpc = cc.find_library('mpc') -# Cannot be found via pkg-config -gap = cc.find_library('gap') +# Cannot be found via pkg-config (pkg-config file will be added in 4.13) +# Test for common.h header that was added in 4.12 as a indirect version check +gap = cc.find_library('gap', has_headers: ['gap/common.h'], required: false) +if not gap.found() + gap = subproject('gap').get_variable('gap_dep') +endif singular = dependency('Singular') diff --git a/subprojects/gap.wrap b/subprojects/gap.wrap new file mode 100644 index 00000000000..7b248243616 --- /dev/null +++ b/subprojects/gap.wrap @@ -0,0 +1,6 @@ +[wrap-file] +directory=gap-4.12.2 +source_url=https://github.com/gap-system/gap/releases/download/v4.12.2/gap-4.12.2.tar.gz +source_filename=gap-4.12.2.tar.gz +source_hash=672308745eb78a222494ee8dd6786edd5bc331456fcc6456ac064bdb28d587a8 +patch_directory=gap diff --git a/subprojects/packagefiles/gap/meson.build b/subprojects/packagefiles/gap/meson.build new file mode 100644 index 00000000000..99dbeb23f1d --- /dev/null +++ b/subprojects/packagefiles/gap/meson.build @@ -0,0 +1,8 @@ +project('gap', 'c') + +mod = import('unstable-external_project') + +project = mod.add_project('configure') + +gap_dep = project.dependency('gap') +meson.override_dependency('gap', gap_dep) From ee096c90a702545260c86a78f26fc94513e9b43f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sun, 10 Mar 2024 12:13:27 +0000 Subject: [PATCH 161/229] Add more fallback subprojects --- subprojects/.gitignore | 4 ++++ subprojects/fflas-ffpack.wrap | 6 ++++++ subprojects/givaro.wrap | 6 ++++++ subprojects/linbox-1.6.3.wrap | 6 ++++++ subprojects/linbox-1.7.0.wrap | 6 ++++++ subprojects/packagefiles/fflas-ffpack/meson.build | 8 ++++++++ subprojects/packagefiles/givaro/meson.build | 8 ++++++++ subprojects/packagefiles/linbox/meson.build | 8 ++++++++ 8 files changed, 52 insertions(+) create mode 100644 subprojects/fflas-ffpack.wrap create mode 100644 subprojects/givaro.wrap create mode 100644 subprojects/linbox-1.6.3.wrap create mode 100644 subprojects/linbox-1.7.0.wrap create mode 100644 subprojects/packagefiles/fflas-ffpack/meson.build create mode 100644 subprojects/packagefiles/givaro/meson.build create mode 100644 subprojects/packagefiles/linbox/meson.build diff --git a/subprojects/.gitignore b/subprojects/.gitignore index 2df6742f4a3..a37725ef03c 100644 --- a/subprojects/.gitignore +++ b/subprojects/.gitignore @@ -2,3 +2,7 @@ packagecache flint-*/ lcalc-*/ +linbox-*/ +fflas-ffpack-*/ +givaro-*/ +gap-*/ diff --git a/subprojects/fflas-ffpack.wrap b/subprojects/fflas-ffpack.wrap new file mode 100644 index 00000000000..a8f7c4c7396 --- /dev/null +++ b/subprojects/fflas-ffpack.wrap @@ -0,0 +1,6 @@ +[wrap-file] +directory=fflas-ffpack-2.5.0 +source_url=https://github.com/linbox-team/fflas-ffpack/releases/download/v2.5.0/fflas-ffpack-2.5.0.tar.gz +source_filename=fflas-ffpack-2.5.0.tar.gz +source_hash=dafb4c0835824d28e4f823748579be6e4c8889c9570c6ce9cce1e186c3ebbb23 +patch_directory=fflas-ffpack diff --git a/subprojects/givaro.wrap b/subprojects/givaro.wrap new file mode 100644 index 00000000000..c44a96df2d9 --- /dev/null +++ b/subprojects/givaro.wrap @@ -0,0 +1,6 @@ +[wrap-file] +directory=givaro-4.2.0 +source_url=https://github.com/linbox-team/givaro/releases/download/v4.2.0/givaro-4.2.0.tar.gz +source_filename=givaro-4.2.0.tar.gz +source_hash=865e228812feca971dfb6e776a7bc7ac959cf63ebd52b4f05492730a46e1f189 +patch_directory=givaro diff --git a/subprojects/linbox-1.6.3.wrap b/subprojects/linbox-1.6.3.wrap new file mode 100644 index 00000000000..baf3aa864f6 --- /dev/null +++ b/subprojects/linbox-1.6.3.wrap @@ -0,0 +1,6 @@ +[wrap-file] +directory=linbox-1.6.3 +source_url=https://github.com/linbox-team/linbox/releases/download/v1.6.3/linbox-1.6.3.tar.gz +source_filename=linbox-1.6.3.tar.gz +source_hash=a58a188307b07c57964e844bceb99321d3043a8a4a1fccc082a54928bb9a0057 +patch_directory=linbox diff --git a/subprojects/linbox-1.7.0.wrap b/subprojects/linbox-1.7.0.wrap new file mode 100644 index 00000000000..1cf05df4d4f --- /dev/null +++ b/subprojects/linbox-1.7.0.wrap @@ -0,0 +1,6 @@ +[wrap-file] +directory=linbox-1.7.0 +source_url=https://github.com/linbox-team/linbox/releases/download/v1.7.0/linbox-1.7.0.tar.gz +source_filename=linbox-1.7.0.tar.gz +source_hash=6d2159fd395be0298362dd37f6c696676237bc8e2757341fbc46520e3b466bcc +patch_directory=linbox diff --git a/subprojects/packagefiles/fflas-ffpack/meson.build b/subprojects/packagefiles/fflas-ffpack/meson.build new file mode 100644 index 00000000000..84685284ff7 --- /dev/null +++ b/subprojects/packagefiles/fflas-ffpack/meson.build @@ -0,0 +1,8 @@ +project('fflas-ffpack', 'c') + +mod = import('unstable-external_project') + +project = mod.add_project('configure') + +fflasffpack_dep = project.dependency('fflas-ffpack') +meson.override_dependency('fflas-ffpack', fflasffpack_dep) diff --git a/subprojects/packagefiles/givaro/meson.build b/subprojects/packagefiles/givaro/meson.build new file mode 100644 index 00000000000..4f25dab4abb --- /dev/null +++ b/subprojects/packagefiles/givaro/meson.build @@ -0,0 +1,8 @@ +project('givaro', 'c') + +mod = import('unstable-external_project') + +project = mod.add_project('configure') + +givaro_dep = project.dependency('givaro') +meson.override_dependency('givaro', givaro_dep) diff --git a/subprojects/packagefiles/linbox/meson.build b/subprojects/packagefiles/linbox/meson.build new file mode 100644 index 00000000000..daa7213f913 --- /dev/null +++ b/subprojects/packagefiles/linbox/meson.build @@ -0,0 +1,8 @@ +project('linbox', 'c') + +mod = import('unstable-external_project') + +project = mod.add_project('configure') + +linbox_dep = project.dependency('linbox') +meson.override_dependency('linbox', linbox_dep) From e3b90066bebda4e537fd519d8dfa24a817b2f7df Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 13:59:55 +0000 Subject: [PATCH 162/229] update meson files --- meson.build | 23 ++- meson.format | 1 + src/meson.build | 127 ++++++------ .../finite_dimensional_algebras/meson.build | 21 +- src/sage/algebras/fusion_rings/meson.build | 44 ++-- src/sage/algebras/letterplace/meson.build | 32 +-- src/sage/algebras/lie_algebras/meson.build | 24 ++- src/sage/algebras/meson.build | 25 ++- src/sage/algebras/quatalg/meson.build | 28 ++- src/sage/arith/meson.build | 19 +- src/sage/calculus/meson.build | 20 +- src/sage/calculus/transforms/meson.build | 28 +-- src/sage/categories/examples/meson.build | 21 +- src/sage/categories/meson.build | 20 +- src/sage/coding/codecan/meson.build | 24 ++- src/sage/coding/meson.build | 19 +- src/sage/combinat/crystals/meson.build | 19 +- src/sage/combinat/designs/meson.build | 23 ++- src/sage/combinat/integer_lists/meson.build | 27 +-- src/sage/combinat/matrices/meson.build | 29 +-- src/sage/combinat/meson.build | 25 ++- src/sage/combinat/posets/meson.build | 19 +- .../rigged_configurations/meson.build | 21 +- src/sage/combinat/root_system/meson.build | 19 +- src/sage/combinat/words/meson.build | 19 +- src/sage/cpython/meson.build | 19 +- src/sage/crypto/meson.build | 19 +- src/sage/data_structures/meson.build | 24 ++- .../dynamics/arithmetic_dynamics/meson.build | 21 +- .../dynamics/complex_dynamics/meson.build | 25 ++- src/sage/dynamics/meson.build | 8 +- src/sage/ext/interpreters/meson.build | 136 ++++++++----- src/sage/ext/meson.build | 21 +- src/sage/functions/meson.build | 21 +- src/sage/games/meson.build | 27 ++- src/sage/geometry/meson.build | 30 ++- .../combinatorial_polyhedron/meson.build | 22 +- src/sage/geometry/polyhedron/meson.build | 2 +- src/sage/geometry/triangulation/meson.build | 26 ++- src/sage/graphs/base/meson.build | 42 ++-- src/sage/graphs/generators/meson.build | 21 +- .../graphs/graph_decompositions/meson.build | 59 +++--- src/sage/graphs/meson.build | 101 +++++---- src/sage/groups/matrix_gps/meson.build | 19 +- src/sage/groups/meson.build | 19 +- src/sage/groups/perm_gps/meson.build | 21 +- .../groups/perm_gps/partn_ref/meson.build | 23 ++- .../groups/perm_gps/partn_ref2/meson.build | 21 +- .../semimonomial_transformations/meson.build | 23 ++- src/sage/interacts/meson.build | 21 +- src/sage/interfaces/meson.build | 20 +- src/sage/lfunctions/meson.build | 21 +- src/sage/libs/arb/meson.build | 21 +- src/sage/libs/coxeter3/meson.build | 27 ++- src/sage/libs/eclib/meson.build | 27 +-- src/sage/libs/flint/meson.build | 19 +- src/sage/libs/gap/meson.build | 19 +- src/sage/libs/giac/meson.build | 23 +-- src/sage/libs/glpk/meson.build | 17 +- src/sage/libs/gmp/meson.build | 21 +- src/sage/libs/gsl/meson.build | 21 +- src/sage/libs/lcalc/meson.build | 37 ++-- src/sage/libs/linbox/meson.build | 21 +- src/sage/libs/meson.build | 59 +++--- src/sage/libs/mpmath/meson.build | 24 ++- src/sage/libs/ntl/meson.build | 67 +++--- src/sage/libs/pari/meson.build | 19 +- src/sage/libs/singular/meson.build | 31 +-- src/sage/libs/symmetrica/meson.build | 21 +- src/sage/matrix/meson.build | 151 ++++++++++---- src/sage/matroids/meson.build | 22 +- src/sage/meson.build | 61 +++--- src/sage/misc/meson.build | 20 +- src/sage/modular/arithgroup/meson.build | 55 +++-- src/sage/modular/meson.build | 26 +-- src/sage/modular/modform/meson.build | 19 +- src/sage/modular/modsym/meson.build | 19 +- src/sage/modular/pollack_stevens/meson.build | 21 +- src/sage/modules/meson.build | 52 +++-- src/sage/modules/with_basis/meson.build | 21 +- src/sage/monoids/meson.build | 19 +- src/sage/numerical/backends/meson.build | 40 ++-- src/sage/numerical/meson.build | 19 +- src/sage/plot/meson.build | 21 +- src/sage/plot/plot3d/meson.build | 19 +- src/sage/probability/meson.build | 19 +- src/sage/quadratic_forms/meson.build | 19 +- src/sage/quivers/meson.build | 19 +- src/sage/rings/convert/meson.build | 21 +- src/sage/rings/finite_rings/meson.build | 54 +++-- src/sage/rings/function_field/meson.build | 28 ++- src/sage/rings/meson.build | 97 +++++++-- src/sage/rings/number_field/meson.build | 40 ++-- src/sage/rings/padics/meson.build | 71 ++++--- src/sage/rings/polynomial/meson.build | 99 ++++++--- src/sage/rings/polynomial/pbori/meson.build | 23 +-- src/sage/rings/polynomial/weil/meson.build | 25 ++- src/sage/rings/semirings/meson.build | 28 ++- src/sage/sat/meson.build | 2 +- src/sage/sat/solvers/meson.build | 21 +- src/sage/schemes/elliptic_curves/meson.build | 19 +- .../schemes/hyperelliptic_curves/meson.build | 32 ++- src/sage/schemes/meson.build | 2 +- src/sage/schemes/toric/meson.build | 21 +- src/sage/sets/meson.build | 19 +- src/sage/stats/distributions/meson.build | 30 ++- src/sage/stats/hmm/meson.build | 19 +- src/sage/stats/meson.build | 19 +- src/sage/structure/meson.build | 19 +- src/sage/symbolic/meson.build | 180 ++++++++++------- src/sage/tests/meson.build | 42 ++-- tools/README.md | 13 ++ tools/update-meson.py | 191 ++++++++++++++++-- 113 files changed, 2223 insertions(+), 1497 deletions(-) create mode 100644 meson.format create mode 100644 tools/README.md mode change 100644 => 100755 tools/update-meson.py diff --git a/meson.build b/meson.build index 7f42573fdfa..4287f516acc 100644 --- a/meson.build +++ b/meson.build @@ -2,7 +2,7 @@ project( 'SageMath', ['c', 'cpp', 'cython'], version: files('src/VERSION.txt'), - license: 'GPL v3' + license: 'GPL v3', ) # Python module @@ -12,18 +12,21 @@ py = py_module.find_installation(pure: false) py_dep = py.dependency() # Additional targets -py_with_pytest = py_module.find_installation(required: false, modules: ['pytest']) +py_with_pytest = py_module.find_installation( + required: false, + modules: ['pytest'], +) if py_with_pytest.found() test( - 'pytest', - py_with_pytest, + 'pytest', + py_with_pytest, args: [ - '-m', - 'pytest', - '-c', - meson.current_source_dir() / 'tox.ini', - '--doctest', - meson.current_source_dir() / 'src' / 'sage' / 'categories' + '-m', + 'pytest', + '-c', + meson.current_source_dir() / 'tox.ini', + '--doctest', + meson.current_source_dir() / 'src' / 'sage' / 'categories', ], timeout: 0, ) diff --git a/meson.format b/meson.format new file mode 100644 index 00000000000..f56718e583f --- /dev/null +++ b/meson.format @@ -0,0 +1 @@ +indent_by: ' ' diff --git a/src/meson.build b/src/meson.build index d0a742d8f55..ba3900506a9 100644 --- a/src/meson.build +++ b/src/meson.build @@ -4,89 +4,95 @@ cpp = meson.get_compiler('cpp') cython = meson.get_compiler('cython') # Setup dependencies that are needed by many modules -inc_numpy = run_command(py, - [ +inc_numpy = run_command( + py, + [ '-c', ''' import numpy print(numpy.get_include()) - '''.strip() - ], - check: true - ).stdout().strip() -numpy = declare_dependency( - include_directories: inc_numpy, -) + '''.strip(), + ], + check: true, +).stdout().strip() +numpy = declare_dependency(include_directories: inc_numpy) -inc_cysignals = run_command(py, - [ +inc_cysignals = run_command( + py, + [ '-c', ''' import cysignals print(cysignals.__file__.replace('__init__.py', '')) - '''.strip() - ], - check: true - ).stdout().strip() -cysignals = declare_dependency( - include_directories: inc_cysignals, -) + '''.strip(), + ], + check: true, +).stdout().strip() +cysignals = declare_dependency(include_directories: inc_cysignals) -inc_gmpy2 = run_command(py, - [ +inc_gmpy2 = run_command( + py, + [ '-c', ''' import gmpy2 print(gmpy2.__file__.replace('__init__.py', '')) - '''.strip() - ], - check: true - ).stdout().strip() -gmpy2 = declare_dependency( - include_directories: inc_gmpy2, -) + '''.strip(), + ], + check: true, +).stdout().strip() +gmpy2 = declare_dependency(include_directories: inc_gmpy2) gmp = dependency('gmp', required: true) -inc_cypari2 = run_command(py, - [ +inc_cypari2 = run_command( + py, + [ '-c', ''' import cypari2 print(cypari2.__file__.replace('__init__.py', '')) - '''.strip() - ], - check: true - ).stdout().strip() -cypari2 = declare_dependency( - include_directories: inc_cypari2, -) + '''.strip(), + ], + check: true, +).stdout().strip() +cypari2 = declare_dependency(include_directories: inc_cypari2) pari = cc.find_library('pari') mpfr = cc.find_library('mpfr') # Once https://github.com/mesonbuild/meson/pull/12616 is released, we can simply do the following: # flint = dependency('flint', version : '>=3.0.0') -flint = dependency('flint', version : '>=3.0.0', required: false, allow_fallback: false) +flint = dependency( + 'flint', + version: '>=3.0.0', + required: false, + allow_fallback: false, +) if not flint.found() - flint = subproject('flint').get_variable('flint_dep') + flint = subproject('flint').get_variable('flint_dep') else - # Currently the flint pkg-config file is broken, so we manually use find_library - # Can be removed once we require a version of flint that ships https://github.com/flintlib/flint/pull/1647 - flint = cc.find_library('flint') + # Currently the flint pkg-config file is broken, so we manually use find_library + # Can be removed once we require a version of flint that ships https://github.com/flintlib/flint/pull/1647 + flint = cc.find_library('flint') endif blas_order = [] if host_machine.system() == 'darwin' -blas_order += 'accelerate' + blas_order += 'accelerate' endif if host_machine.cpu_family() == 'x86_64' -blas_order += 'mkl' + blas_order += 'mkl' endif # pkg-config uses a lower-case name while CMake uses a capitalized name, so try # that too to make the fallback detection with CMake work blas_order += ['cblas', 'openblas', 'OpenBLAS', 'flexiblas', 'blis', 'blas'] blas = dependency(blas_order) -gsl = dependency('gsl', fallback: ['gsl', 'gsl_dep'], version : '>=2.5', required: true) +gsl = dependency( + 'gsl', + fallback: ['gsl', 'gsl_dep'], + version: '>=2.5', + required: true, +) gd = cc.find_library('gd') iml = cc.find_library('iml') m = cc.find_library('m') @@ -110,7 +116,7 @@ fplll = dependency('fplll') givaro = cc.find_library('givaro') linbox = dependency('linbox', required: false) if not linbox.found() - linbox = cc.find_library('linbox') + linbox = cc.find_library('linbox') endif braiding = cc.find_library('braiding') gc = cc.find_library('gc') @@ -122,7 +128,7 @@ mpc = cc.find_library('mpc') # Test for common.h header that was added in 4.12 as a indirect version check gap = cc.find_library('gap', has_headers: ['gap/common.h'], required: false) if not gap.found() - gap = subproject('gap').get_variable('gap_dep') + gap = subproject('gap').get_variable('gap_dep') endif singular = dependency('Singular') @@ -135,22 +141,25 @@ ntl = cc.find_library('ntl', required: true) # Meson currently ignores include_directories for Cython modules, so we # have to add them manually. # https://github.com/mesonbuild/meson/issues/9562 -add_project_arguments('-I', meson.current_source_dir(), language : 'cython') -add_project_arguments('-I', meson.current_build_dir(), language : 'cython') +add_project_arguments('-I', meson.current_source_dir(), language: 'cython') +add_project_arguments('-I', meson.current_build_dir(), language: 'cython') # Add global compiler flags -add_project_arguments('-X auto_pickle=False', language : 'cython') -add_project_arguments('-X autotestdict=False', language : 'cython') -add_project_arguments('-X binding=False', language : 'cython') -add_project_arguments('-X c_api_binop_methods=True', language : 'cython') -add_project_arguments('-X cdivision=True', language : 'cython') -add_project_arguments('-X cpow=True', language : 'cython') -add_project_arguments('-X embedsignature=True', language : 'cython') -add_project_arguments('--embed-positions', language : 'cython') -add_project_arguments('-X fast_getattr=True', language : 'cython') +add_project_arguments('-X auto_pickle=False', language: 'cython') +add_project_arguments('-X autotestdict=False', language: 'cython') +add_project_arguments('-X binding=False', language: 'cython') +add_project_arguments('-X c_api_binop_methods=True', language: 'cython') +add_project_arguments('-X cdivision=True', language: 'cython') +add_project_arguments('-X cpow=True', language: 'cython') +add_project_arguments('-X embedsignature=True', language: 'cython') +add_project_arguments('--embed-positions', language: 'cython') +add_project_arguments('-X fast_getattr=True', language: 'cython') #add_project_arguments('-X language_level="3"', language : 'cython') -add_project_arguments('-X legacy_implicit_noexcept=True', language : 'cython') -add_project_arguments('-X preliminary_late_includes_cy28=True', language : 'cython') +add_project_arguments('-X legacy_implicit_noexcept=True', language: 'cython') +add_project_arguments( + '-X preliminary_late_includes_cy28=True', + language: 'cython', +) inc_cpython = include_directories('sage/cpython') inc_rings = include_directories('sage/rings') diff --git a/src/sage/algebras/finite_dimensional_algebras/meson.build b/src/sage/algebras/finite_dimensional_algebras/meson.build index 336dfcd0ba2..075f0b8cebd 100644 --- a/src/sage/algebras/finite_dimensional_algebras/meson.build +++ b/src/sage/algebras/finite_dimensional_algebras/meson.build @@ -4,20 +4,23 @@ py.install_sources( 'finite_dimensional_algebra_element.pxd', 'finite_dimensional_algebra_ideal.py', 'finite_dimensional_algebra_morphism.py', - subdir : 'sage/algebras/finite_dimensional_algebras' + subdir: 'sage/algebras/finite_dimensional_algebras', ) extension_data = { - 'finite_dimensional_algebra_element' : files('finite_dimensional_algebra_element.pyx') + 'finite_dimensional_algebra_element' : files( + 'finite_dimensional_algebra_element.pyx', + ), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras/finite_dimensional_algebras', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras/finite_dimensional_algebras', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index 4d5ed2d77e5..281460a066a 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -7,37 +7,41 @@ py.install_sources( 'fusion_ring.py', 'poly_tup_engine.pxd', 'shm_managers.pxd', - subdir : 'sage/algebras/fusion_rings' + subdir: 'sage/algebras/fusion_rings', ) extension_data = { - 'fast_parallel_fusion_ring_braid_repn' : files('fast_parallel_fusion_ring_braid_repn.pyx') + 'fast_parallel_fusion_ring_braid_repn' : files( + 'fast_parallel_fusion_ring_braid_repn.pyx', + ), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras/fusion_rings', - install: true, - include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras/fusion_rings', + install: true, + include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach extension_data_cpp = { - 'fast_parallel_fmats_methods': files('fast_parallel_fmats_methods.pyx'), - 'poly_tup_engine': files('poly_tup_engine.pyx'), - 'shm_managers': files('shm_managers.pyx'), + 'fast_parallel_fmats_methods': files('fast_parallel_fmats_methods.pyx'), + 'poly_tup_engine': files('poly_tup_engine.pyx'), + 'shm_managers': files('shm_managers.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras/fusion_rings', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp, singular], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras/fusion_rings', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp, singular], + ) endforeach diff --git a/src/sage/algebras/letterplace/meson.build b/src/sage/algebras/letterplace/meson.build index 66044e74c46..1ada90927a7 100644 --- a/src/sage/algebras/letterplace/meson.build +++ b/src/sage/algebras/letterplace/meson.build @@ -1,19 +1,27 @@ -py.install_sources('all.py', 'free_algebra_element_letterplace.pxd', 'free_algebra_letterplace.pxd', subdir : 'sage/algebras/letterplace') +py.install_sources( + 'all.py', + 'free_algebra_element_letterplace.pxd', + 'free_algebra_letterplace.pxd', + subdir: 'sage/algebras/letterplace', +) extension_data_cpp = { - 'free_algebra_element_letterplace': files('free_algebra_element_letterplace.pyx'), - 'free_algebra_letterplace': files('free_algebra_letterplace.pyx'), - 'letterplace_ideal': files('letterplace_ideal.pyx'), + 'free_algebra_element_letterplace': files( + 'free_algebra_element_letterplace.pyx', + ), + 'free_algebra_letterplace': files('free_algebra_letterplace.pyx'), + 'letterplace_ideal': files('letterplace_ideal.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras/letterplace', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp, singular], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras/letterplace', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp, singular], + ) endforeach diff --git a/src/sage/algebras/lie_algebras/meson.build b/src/sage/algebras/lie_algebras/meson.build index fd46f3acc9a..f50959cb44b 100644 --- a/src/sage/algebras/lie_algebras/meson.build +++ b/src/sage/algebras/lie_algebras/meson.build @@ -3,6 +3,9 @@ py.install_sources( 'affine_lie_algebra.py', 'all.py', 'bch.py', + 'bgg_dual_module.py', + 'bgg_resolution.py', + 'center_uea.py', 'classical_lie_algebra.py', 'examples.py', 'free_lie_algebra.py', @@ -21,20 +24,19 @@ py.install_sources( 'symplectic_derivation.py', 'verma_module.py', 'virasoro.py', - subdir : 'sage/algebras/lie_algebras' + subdir: 'sage/algebras/lie_algebras', ) -extension_data = { - 'lie_algebra_element' : files('lie_algebra_element.pyx') -} +extension_data = {'lie_algebra_element' : files('lie_algebra_element.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras/lie_algebras', - install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras/lie_algebras', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/algebras/meson.build b/src/sage/algebras/meson.build index b385fb3c3bc..a7e74474c6b 100644 --- a/src/sage/algebras/meson.build +++ b/src/sage/algebras/meson.build @@ -30,6 +30,7 @@ py.install_sources( 'q_system.py', 'quantum_clifford.py', 'quantum_matrix_coordinate_algebra.py', + 'quantum_oscillator.py', 'quaternion_algebra.py', 'quaternion_algebra_element.py', 'rational_cherednik_algebra.py', @@ -40,23 +41,24 @@ py.install_sources( 'weyl_algebra.py', 'yangian.py', 'yokonuma_hecke_algebra.py', - subdir : 'sage/algebras' + subdir: 'sage/algebras', ) extension_data = { 'clifford_algebra_element' : files('clifford_algebra_element.pyx'), 'exterior_algebra_groebner' : files('exterior_algebra_groebner.pyx'), - 'octonion_algebra' : files('octonion_algebra.pyx') + 'octonion_algebra' : files('octonion_algebra.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach subdir('finite_dimensional_algebras') @@ -64,7 +66,10 @@ subdir('fusion_rings') install_subdir('hecke_algebras', install_dir: sage_install_dir / 'algebras') subdir('letterplace') subdir('lie_algebras') -install_subdir('lie_conformal_algebras', install_dir: sage_install_dir / 'algebras') +install_subdir( + 'lie_conformal_algebras', + install_dir: sage_install_dir / 'algebras', +) install_subdir('quantum_groups', install_dir: sage_install_dir / 'algebras') subdir('quatalg') install_subdir('steenrod', install_dir: sage_install_dir / 'algebras') diff --git a/src/sage/algebras/quatalg/meson.build b/src/sage/algebras/quatalg/meson.build index 1461fd642bf..2ec5cd31f22 100644 --- a/src/sage/algebras/quatalg/meson.build +++ b/src/sage/algebras/quatalg/meson.build @@ -1,18 +1,24 @@ -py.install_sources('all.py', 'quaternion_algebra.py', 'quaternion_algebra_element.pxd', subdir : 'sage/algebras/quatalg') +py.install_sources( + 'all.py', + 'quaternion_algebra.py', + 'quaternion_algebra_element.pxd', + subdir: 'sage/algebras/quatalg', +) extension_data_cpp = { - 'quaternion_algebra_cython': files('quaternion_algebra_cython.pyx'), - 'quaternion_algebra_element': files('quaternion_algebra_element.pyx'), + 'quaternion_algebra_cython': files('quaternion_algebra_cython.pyx'), + 'quaternion_algebra_element': files('quaternion_algebra_element.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/algebras/quatalg', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, flint, gmp, m, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/algebras/quatalg', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, flint, gmp, m, ntl], + ) endforeach diff --git a/src/sage/arith/meson.build b/src/sage/arith/meson.build index 27367db6a77..3c3656c5738 100644 --- a/src/sage/arith/meson.build +++ b/src/sage/arith/meson.build @@ -9,7 +9,7 @@ py.install_sources( 'numerical_approx.pxd', 'power.pxd', 'rational_reconstruction.pxd', - subdir : 'sage/arith' + subdir: 'sage/arith', ) extension_data = { @@ -18,16 +18,17 @@ extension_data = { 'numerical_approx' : files('numerical_approx.pyx'), 'power' : files('power.pyx'), 'rational_reconstruction' : files('rational_reconstruction.pyx'), - 'srange' : files('srange.pyx') + 'srange' : files('srange.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/arith', - install: true, - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/arith', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index e11ac5a0a32..541d7d86d75 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -2,6 +2,7 @@ py.install_sources( 'all.py', 'calculus.py', 'desolvers.py', + 'expr.py', 'functional.py', 'functions.py', 'interpolation.pxd', @@ -10,7 +11,7 @@ py.install_sources( 'test_sympy.py', 'tests.py', 'wester.py', - subdir : 'sage/calculus' + subdir: 'sage/calculus', ) extension_data = { @@ -19,17 +20,18 @@ extension_data = { 'interpolators' : files('interpolators.pyx'), 'ode' : files('ode.pyx'), 'riemann' : files('riemann.pyx'), - 'var' : files('var.pyx') + 'var' : files('var.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/calculus', - install: true, - include_directories: [inc_numpy], - dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/calculus', + install: true, + include_directories: [inc_numpy], + dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep], + ) endforeach subdir('transforms') diff --git a/src/sage/calculus/transforms/meson.build b/src/sage/calculus/transforms/meson.build index 7b335345733..05d3fb59637 100644 --- a/src/sage/calculus/transforms/meson.build +++ b/src/sage/calculus/transforms/meson.build @@ -1,17 +1,21 @@ -py.install_sources('all.py', 'dft.py', 'dwt.pxd', 'fft.pxd', subdir : 'sage/calculus/transforms') +py.install_sources( + 'all.py', + 'dft.py', + 'dwt.pxd', + 'fft.pxd', + subdir: 'sage/calculus/transforms', +) -extension_data = { - 'dwt' : files('dwt.pyx'), - 'fft' : files('fft.pyx') -} +extension_data = {'dwt' : files('dwt.pyx'), 'fft' : files('fft.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/calculus/transforms', - install: true, - include_directories: [inc_gsl], - dependencies: [py_dep, cysignals, gmp, gsl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/calculus/transforms', + install: true, + include_directories: [inc_gsl], + dependencies: [py_dep, cysignals, gmp, gsl], + ) endforeach diff --git a/src/sage/categories/examples/meson.build b/src/sage/categories/examples/meson.build index 2aab0d6d37b..ecb63c913ba 100644 --- a/src/sage/categories/examples/meson.build +++ b/src/sage/categories/examples/meson.build @@ -31,20 +31,19 @@ py.install_sources( 'sets_cat.py', 'sets_with_grading.py', 'with_realizations.py', - subdir : 'sage/categories/examples' + subdir: 'sage/categories/examples', ) -extension_data = { - 'semigroups_cython' : files('semigroups_cython.pyx') -} +extension_data = {'semigroups_cython' : files('semigroups_cython.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/categories/examples', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/categories/examples', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index aa022386e35..affc2034df2 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -144,6 +144,7 @@ py.install_sources( 'monoid_algebras.py', 'monoids.py', 'morphism.pxd', + 'noetherian_rings.py', 'number_fields.py', 'objects.py', 'partially_ordered_monoids.py', @@ -197,7 +198,7 @@ py.install_sources( 'vector_spaces.py', 'weyl_groups.py', 'with_realizations.py', - subdir : 'sage/categories' + subdir: 'sage/categories', ) extension_data = { @@ -207,17 +208,18 @@ extension_data = { 'coercion_methods' : files('coercion_methods.pyx'), 'functor' : files('functor.pyx'), 'map' : files('map.pyx'), - 'morphism' : files('morphism.pyx') + 'morphism' : files('morphism.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/categories', - install: true, - include_directories: [inc_cpython, inc_ext], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/categories', + install: true, + include_directories: [inc_cpython, inc_ext], + dependencies: [py_dep, gmp], + ) endforeach subdir('examples') diff --git a/src/sage/coding/codecan/meson.build b/src/sage/coding/codecan/meson.build index fb9a14fa9bc..ac3a94a1edd 100644 --- a/src/sage/coding/codecan/meson.build +++ b/src/sage/coding/codecan/meson.build @@ -1,17 +1,23 @@ -py.install_sources('all.py', 'codecan.pxd', subdir : 'sage/coding/codecan') +py.install_sources('all.py', 'codecan.pxd', subdir: 'sage/coding/codecan') extension_data = { 'autgroup_can_label' : files('autgroup_can_label.pyx'), - 'codecan' : files('codecan.pyx') + 'codecan' : files('codecan.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/coding/codecan', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_partn_ref2, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/coding/codecan', + install: true, + include_directories: [ + inc_cpython, + inc_data_structures, + inc_partn_ref2, + inc_rings, + ], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/coding/meson.build b/src/sage/coding/meson.build index 1a219ccec07..65b2e0d8eb1 100644 --- a/src/sage/coding/meson.build +++ b/src/sage/coding/meson.build @@ -34,23 +34,24 @@ py.install_sources( 'self_dual_codes.py', 'subfield_subcode.py', 'two_weight_db.py', - subdir : 'sage/coding' + subdir: 'sage/coding', ) extension_data = { 'ag_code_decoders' : files('ag_code_decoders.pyx'), 'binary_code' : files('binary_code.pyx'), - 'kasami_codes' : files('kasami_codes.pyx') + 'kasami_codes' : files('kasami_codes.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/coding', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/coding', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach subdir('codecan') diff --git a/src/sage/combinat/crystals/meson.build b/src/sage/combinat/crystals/meson.build index 9f57d67b1a8..e3605ed31b3 100644 --- a/src/sage/combinat/crystals/meson.build +++ b/src/sage/combinat/crystals/meson.build @@ -31,23 +31,24 @@ py.install_sources( 'subcrystal.py', 'tensor_product.py', 'virtual_crystal.py', - subdir : 'sage/combinat/crystals' + subdir: 'sage/combinat/crystals', ) extension_data = { 'letters' : files('letters.pyx'), 'pbw_datum' : files('pbw_datum.pyx'), 'spins' : files('spins.pyx'), - 'tensor_product_element' : files('tensor_product_element.pyx') + 'tensor_product_element' : files('tensor_product_element.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/crystals', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/crystals', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/combinat/designs/meson.build b/src/sage/combinat/designs/meson.build index a12d7bca407..fd3a8896bb3 100644 --- a/src/sage/combinat/designs/meson.build +++ b/src/sage/combinat/designs/meson.build @@ -19,24 +19,27 @@ py.install_sources( 'resolvable_bibd.py', 'steiner_quadruple_systems.py', 'twographs.py', - subdir : 'sage/combinat/designs' + subdir: 'sage/combinat/designs', ) extension_data = { 'designs_pyx' : files('designs_pyx.pyx'), 'evenly_distributed_sets' : files('evenly_distributed_sets.pyx'), 'gen_quadrangles_with_spread' : files('gen_quadrangles_with_spread.pyx'), - 'orthogonal_arrays_find_recursive' : files('orthogonal_arrays_find_recursive.pyx'), - 'subhypergraph_search' : files('subhypergraph_search.pyx') + 'orthogonal_arrays_find_recursive' : files( + 'orthogonal_arrays_find_recursive.pyx', + ), + 'subhypergraph_search' : files('subhypergraph_search.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/designs', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/designs', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/combinat/integer_lists/meson.build b/src/sage/combinat/integer_lists/meson.build index 0ab41fd33e5..ec0c5a3084b 100644 --- a/src/sage/combinat/integer_lists/meson.build +++ b/src/sage/combinat/integer_lists/meson.build @@ -1,17 +1,20 @@ -py.install_sources('__init__.py', 'lists.py', 'nn.py', subdir : 'sage/combinat/integer_lists') +py.install_sources( + '__init__.py', + 'lists.py', + 'nn.py', + subdir: 'sage/combinat/integer_lists', +) -extension_data = { - 'base' : files('base.pyx'), - 'invlex' : files('invlex.pyx') -} +extension_data = {'base' : files('base.pyx'), 'invlex' : files('invlex.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/integer_lists', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/integer_lists', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/combinat/matrices/meson.build b/src/sage/combinat/matrices/meson.build index ab79262150a..86021f8d376 100644 --- a/src/sage/combinat/matrices/meson.build +++ b/src/sage/combinat/matrices/meson.build @@ -1,17 +1,22 @@ -py.install_sources('all.py', 'dlxcpp.py', 'hadamard_matrix.py', 'latin.py', subdir : 'sage/combinat/matrices') +py.install_sources( + 'all.py', + 'dlxcpp.py', + 'hadamard_matrix.py', + 'latin.py', + subdir: 'sage/combinat/matrices', +) -extension_data_cpp = { - 'dancing_links': files('dancing_links.pyx'), -} +extension_data_cpp = {'dancing_links': files('dancing_links.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/matrices', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/matrices', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/combinat/meson.build b/src/sage/combinat/meson.build index 24a7adcd9ef..5ef2dcb5d08 100644 --- a/src/sage/combinat/meson.build +++ b/src/sage/combinat/meson.build @@ -1,4 +1,5 @@ py.install_sources( + 'SJT.py', 'abstract_tree.py', 'affine_permutation.py', 'algebraic_combinatorics.py', @@ -123,7 +124,7 @@ py.install_sources( 'tutorial.py', 'vector_partition.py', 'yang_baxter_graph.py', - subdir : 'sage/combinat' + subdir: 'sage/combinat', ) extension_data = { @@ -137,21 +138,25 @@ extension_data = { 'permutation_cython' : files('permutation_cython.pyx'), 'q_bernoulli' : files('q_bernoulli.pyx'), 'set_partition_iterator' : files('set_partition_iterator.pyx'), - 'subword_complex_c' : files('subword_complex_c.pyx') + 'subword_complex_c' : files('subword_complex_c.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach install_subdir('chas', install_dir: sage_install_dir / 'combinat') -install_subdir('cluster_algebra_quiver', install_dir: sage_install_dir / 'combinat') +install_subdir( + 'cluster_algebra_quiver', + install_dir: sage_install_dir / 'combinat', +) subdir('crystals') subdir('designs') subdir('integer_lists') diff --git a/src/sage/combinat/posets/meson.build b/src/sage/combinat/posets/meson.build index bc85ead8819..07837832519 100644 --- a/src/sage/combinat/posets/meson.build +++ b/src/sage/combinat/posets/meson.build @@ -12,22 +12,23 @@ py.install_sources( 'moebius_algebra.py', 'poset_examples.py', 'posets.py', - subdir : 'sage/combinat/posets' + subdir: 'sage/combinat/posets', ) extension_data = { 'hasse_cython' : files('hasse_cython.pyx'), 'hasse_cython_flint' : files('hasse_cython_flint.pyx'), - 'linear_extension_iterator' : files('linear_extension_iterator.pyx') + 'linear_extension_iterator' : files('linear_extension_iterator.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/posets', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/posets', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach diff --git a/src/sage/combinat/rigged_configurations/meson.build b/src/sage/combinat/rigged_configurations/meson.build index 29fb46bf731..0426d96e63a 100644 --- a/src/sage/combinat/rigged_configurations/meson.build +++ b/src/sage/combinat/rigged_configurations/meson.build @@ -21,20 +21,19 @@ py.install_sources( 'rigged_configurations.py', 'tensor_product_kr_tableaux.py', 'tensor_product_kr_tableaux_element.py', - subdir : 'sage/combinat/rigged_configurations' + subdir: 'sage/combinat/rigged_configurations', ) -extension_data = { - 'rigged_partition' : files('rigged_partition.pyx') -} +extension_data = {'rigged_partition' : files('rigged_partition.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/rigged_configurations', - install: true, - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/rigged_configurations', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/combinat/root_system/meson.build b/src/sage/combinat/root_system/meson.build index 298c955be71..b768fed5f8a 100644 --- a/src/sage/combinat/root_system/meson.build +++ b/src/sage/combinat/root_system/meson.build @@ -53,22 +53,23 @@ py.install_sources( 'weight_space.py', 'weyl_characters.py', 'weyl_group.py', - subdir : 'sage/combinat/root_system' + subdir: 'sage/combinat/root_system', ) extension_data = { 'braid_orbit' : files('braid_orbit.pyx'), 'reflection_group_c' : files('reflection_group_c.pyx'), - 'reflection_group_element' : files('reflection_group_element.pyx') + 'reflection_group_element' : files('reflection_group_element.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/root_system', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/root_system', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/combinat/words/meson.build b/src/sage/combinat/words/meson.build index a396134f586..6751e09b369 100644 --- a/src/sage/combinat/words/meson.build +++ b/src/sage/combinat/words/meson.build @@ -15,21 +15,22 @@ py.install_sources( 'word_infinite_datatypes.py', 'word_options.py', 'words.py', - subdir : 'sage/combinat/words' + subdir: 'sage/combinat/words', ) extension_data = { 'word_char' : files('word_char.pyx'), - 'word_datatypes' : files('word_datatypes.pyx') + 'word_datatypes' : files('word_datatypes.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/combinat/words', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/combinat/words', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/cpython/meson.build b/src/sage/cpython/meson.build index 88628fdbc35..fdd99770782 100644 --- a/src/sage/cpython/meson.build +++ b/src/sage/cpython/meson.build @@ -16,7 +16,7 @@ py.install_sources( 'string_impl.h', 'type.pxd', 'wrapperdescr.pxd', - subdir : 'sage/cpython' + subdir: 'sage/cpython', ) extension_data = { @@ -28,16 +28,17 @@ extension_data = { 'getattr' : files('getattr.pyx'), 'string' : files('string.pyx'), 'type' : files('type.pyx'), - 'wrapperdescr' : files('wrapperdescr.pyx') + 'wrapperdescr' : files('wrapperdescr.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/cpython', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/cpython', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/crypto/meson.build b/src/sage/crypto/meson.build index c9c178b6811..eb3eea7a294 100644 --- a/src/sage/crypto/meson.build +++ b/src/sage/crypto/meson.build @@ -12,22 +12,23 @@ py.install_sources( 'stream.py', 'stream_cipher.py', 'util.py', - subdir : 'sage/crypto' + subdir: 'sage/crypto', ) extension_data = { 'boolean_function' : files('boolean_function.pyx'), - 'sbox' : files('sbox.pyx') + 'sbox' : files('sbox.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/crypto', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/crypto', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach install_subdir('block_cipher', install_dir: sage_install_dir / 'crypto') diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index 71cbfcc76cd..de25b78721d 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -12,7 +12,7 @@ py.install_sources( 'mutable_poset.py', 'sparse_bitset.pxd', 'stream.py', - subdir : 'sage/data_structures' + subdir: 'sage/data_structures', ) extension_data = { @@ -21,16 +21,22 @@ extension_data = { 'bitset_base' : files('bitset_base.pyx'), 'blas_dict' : files('blas_dict.pyx'), 'bounded_integer_sequences' : files('bounded_integer_sequences.pyx'), - 'list_of_pairs' : files('list_of_pairs.pyx') + 'list_of_pairs' : files('list_of_pairs.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/data_structures', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/data_structures', + install: true, + include_directories: [ + inc_cpython, + inc_data_structures, + inc_flint, + inc_rings, + ], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach diff --git a/src/sage/dynamics/arithmetic_dynamics/meson.build b/src/sage/dynamics/arithmetic_dynamics/meson.build index 7a893df2186..9e26a72c874 100644 --- a/src/sage/dynamics/arithmetic_dynamics/meson.build +++ b/src/sage/dynamics/arithmetic_dynamics/meson.build @@ -9,20 +9,19 @@ py.install_sources( 'product_projective_ds.py', 'projective_ds.py', 'wehlerK3.py', - subdir : 'sage/dynamics/arithmetic_dynamics' + subdir: 'sage/dynamics/arithmetic_dynamics', ) -extension_data = { - 'projective_ds_helper' : files('projective_ds_helper.pyx') -} +extension_data = {'projective_ds_helper' : files('projective_ds_helper.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/dynamics/arithmetic_dynamics', - install: true, - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/dynamics/arithmetic_dynamics', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/dynamics/complex_dynamics/meson.build b/src/sage/dynamics/complex_dynamics/meson.build index 426d18c2224..d3961275d3e 100644 --- a/src/sage/dynamics/complex_dynamics/meson.build +++ b/src/sage/dynamics/complex_dynamics/meson.build @@ -1,16 +1,19 @@ -py.install_sources('all.py', 'mandel_julia.py', subdir : 'sage/dynamics/complex_dynamics') +py.install_sources( + 'all.py', + 'mandel_julia.py', + subdir: 'sage/dynamics/complex_dynamics', +) -extension_data = { - 'mandel_julia_helper' : files('mandel_julia_helper.pyx') -} +extension_data = {'mandel_julia_helper' : files('mandel_julia_helper.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/dynamics/complex_dynamics', - install: true, - include_directories: [], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/dynamics/complex_dynamics', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/dynamics/meson.build b/src/sage/dynamics/meson.build index 8c3f511f3d4..134cfd1a296 100644 --- a/src/sage/dynamics/meson.build +++ b/src/sage/dynamics/meson.build @@ -1,4 +1,10 @@ -py.install_sources('all.py', 'finite_dynamical_system.py', 'finite_dynamical_system_catalog.py', 'surface_dynamics_deprecation.py', subdir : 'sage/dynamics') +py.install_sources( + 'all.py', + 'finite_dynamical_system.py', + 'finite_dynamical_system_catalog.py', + 'surface_dynamics_deprecation.py', + subdir: 'sage/dynamics', +) subdir('arithmetic_dynamics') install_subdir('cellular_automata', install_dir: sage_install_dir / 'dynamics') diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index e0dd19577ac..98cf121deb2 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -1,30 +1,30 @@ interpreters = custom_target( - 'sage.ext.interpreters', - output: [ - 'all.py', - 'wrapper_cc.pxd', - 'wrapper_cdf.pxd', - 'wrapper_el.pxd', - 'wrapper_py.pxd', - 'wrapper_rdf.pxd', - 'wrapper_rr.pxd', - 'wrapper_cc.pyx', - 'wrapper_cdf.pyx', - 'wrapper_el.pyx', - 'wrapper_py.pyx', - 'wrapper_rdf.pyx', - 'wrapper_rr.pyx', - '__init__.py', - ], - input: '../../../sage_setup/autogen/interpreters/__init__.py', - command: [py, '-m', 'sage_setup.autogen.interpreters','@OUTDIR@'], - env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..' / '..'], - # Manually install the generated files instead of using install_sources - # this is a workaround for https://github.com/mesonbuild/meson/issues/7372 - install: true, - install_dir: py.get_install_dir() / 'sage/ext/interpreters', - install_tag: 'python-runtime', + 'sage.ext.interpreters', + output: [ + 'all.py', + 'wrapper_cc.pxd', + 'wrapper_cdf.pxd', + 'wrapper_el.pxd', + 'wrapper_py.pxd', + 'wrapper_rdf.pxd', + 'wrapper_rr.pxd', + 'wrapper_cc.pyx', + 'wrapper_cdf.pyx', + 'wrapper_el.pyx', + 'wrapper_py.pyx', + 'wrapper_rdf.pyx', + 'wrapper_rr.pyx', + '__init__.py', + ], + input: '../../../sage_setup/autogen/interpreters/__init__.py', + command: [py, '-m', 'sage_setup.autogen.interpreters', '@OUTDIR@'], + env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..' / '..'], + # Manually install the generated files instead of using install_sources + # this is a workaround for https://github.com/mesonbuild/meson/issues/7372 + install: true, + install_dir: py.get_install_dir() / 'sage/ext/interpreters', + install_tag: 'python-runtime', ) # Use this once https://github.com/mesonbuild/meson/issues/7372 is fixed @@ -47,41 +47,85 @@ extension_data = { # Manually create header files, which otherwise are not found wrapper_el_header = custom_target( 'wrapper_el.h', - output : 'wrapper_el.h', - input : [interpreters[9], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + output: 'wrapper_el.h', + input: [interpreters[9], interpreters], + command: [ + cython.cmd_array(), + '@INPUT0@', + '-o', + '@OUTPUT@', + '-I', + join_paths(meson.current_source_dir(), '../../../'), + ], ) wrapper_cc_header = custom_target( 'wrapper_cc.h', - output : 'wrapper_cc.h', - input : [interpreters[7], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + output: 'wrapper_cc.h', + input: [interpreters[7], interpreters], + command: [ + cython.cmd_array(), + '@INPUT0@', + '-o', + '@OUTPUT@', + '-I', + join_paths(meson.current_source_dir(), '../../../'), + ], ) wrapper_cdf_header = custom_target( 'wrapper_cdf.h', - output : 'wrapper_cdf.h', - input : [interpreters[8], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + output: 'wrapper_cdf.h', + input: [interpreters[8], interpreters], + command: [ + cython.cmd_array(), + '@INPUT0@', + '-o', + '@OUTPUT@', + '-I', + join_paths(meson.current_source_dir(), '../../../'), + ], ) wrapper_rr_header = custom_target( 'wrapper_rr.h', - output : 'wrapper_rr.h', - input : [interpreters[12], interpreters], - command : [cython.cmd_array(), '@INPUT0@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + output: 'wrapper_rr.h', + input: [interpreters[12], interpreters], + command: [ + cython.cmd_array(), + '@INPUT0@', + '-o', + '@OUTPUT@', + '-I', + join_paths(meson.current_source_dir(), '../../../'), + ], ) interpreters_dep = declare_dependency( - sources: [wrapper_el_header, wrapper_cc_header, wrapper_cdf_header, wrapper_rr_header], - include_directories : include_directories('.') + sources: [ + wrapper_el_header, + wrapper_cc_header, + wrapper_cdf_header, + wrapper_rr_header, + ], + include_directories: include_directories('.'), ) foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/ext/interpreters', - install: true, - include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], - dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari, interpreters_dep], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/ext/interpreters', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], + dependencies: [ + py_dep, + cypari2, + cysignals, + gmp, + gsl, + mpc, + mpfr, + pari, + interpreters_dep, + ], + ) endforeach diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index 7cacc1367d8..d1a79eee993 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -4,28 +4,27 @@ py.install_sources( 'cplusplus.pxd', 'fast_callable.pxd', 'fast_eval.pxd', - 'memory_allocator.pxd', 'mod_int.h', 'mod_int.pxd', 'stdsage.pxd', - subdir : 'sage/ext' + subdir: 'sage/ext', ) extension_data = { 'fast_callable' : files('fast_callable.pyx'), 'fast_eval' : files('fast_eval.pyx'), - 'memory' : files('memory.pyx'), - 'memory_allocator' : files('memory_allocator.pyx') + 'memory' : files('memory.pyx') } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/ext', - install: true, - include_directories: [inc_cpython, inc_ext], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/ext', + install: true, + include_directories: [inc_cpython, inc_ext], + dependencies: [py_dep, cysignals, gmp], + ) endforeach subdir('interpreters') diff --git a/src/sage/functions/meson.build b/src/sage/functions/meson.build index c82cbadc680..c2a77f0e238 100644 --- a/src/sage/functions/meson.build +++ b/src/sage/functions/meson.build @@ -19,20 +19,19 @@ py.install_sources( 'transcendental.py', 'trig.py', 'wigner.py', - subdir : 'sage/functions' + subdir: 'sage/functions', ) -extension_data = { - 'prime_pi' : files('prime_pi.pyx') -} +extension_data = {'prime_pi' : files('prime_pi.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/functions', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/functions', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/games/meson.build b/src/sage/games/meson.build index bc7d2deeef4..d0776c0c71a 100644 --- a/src/sage/games/meson.build +++ b/src/sage/games/meson.build @@ -1,16 +1,21 @@ -py.install_sources('all.py', 'hexad.py', 'quantumino.py', 'sudoku.py', subdir : 'sage/games') +py.install_sources( + 'all.py', + 'hexad.py', + 'quantumino.py', + 'sudoku.py', + subdir: 'sage/games', +) -extension_data = { - 'sudoku_backtrack' : files('sudoku_backtrack.pyx') -} +extension_data = {'sudoku_backtrack' : files('sudoku_backtrack.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/games', - install: true, - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/games', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/geometry/meson.build b/src/sage/geometry/meson.build index 224117d14d2..826ca9ef1db 100644 --- a/src/sage/geometry/meson.build +++ b/src/sage/geometry/meson.build @@ -2,6 +2,7 @@ py.install_sources( 'all.py', 'cone.py', 'cone_catalog.py', + 'cone_critical_angles.py', 'convex_set.py', 'fan.py', 'fan_isomorphism.py', @@ -18,7 +19,7 @@ py.install_sources( 'toric_lattice.py', 'toric_plotter.py', 'voronoi_diagram.py', - subdir : 'sage/geometry' + subdir: 'sage/geometry', ) extension_data = { @@ -27,21 +28,28 @@ extension_data = { 'integral_points_integer_dense' : files('integral_points_integer_dense.pyx'), 'palp_normal_form' : files('palp_normal_form.pyx'), 'point_collection' : files('point_collection.pyx'), - 'toric_lattice_element' : files('toric_lattice_element.pyx') + 'toric_lattice_element' : files('toric_lattice_element.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/geometry', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/geometry', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach install_subdir('hyperbolic_space', install_dir: sage_install_dir / 'geometry') -install_subdir('hyperplane_arrangement', install_dir: sage_install_dir / 'geometry') +install_subdir( + 'hyperplane_arrangement', + install_dir: sage_install_dir / 'geometry', +) subdir('polyhedron') -install_subdir('riemannian_manifolds', install_dir: sage_install_dir / 'geometry') +install_subdir( + 'riemannian_manifolds', + install_dir: sage_install_dir / 'geometry', +) subdir('triangulation') diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build index 34c548ffcbd..b3f91e444f4 100644 --- a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build @@ -1,4 +1,7 @@ -py.install_sources('all.py', subdir : 'sage/geometry/polyhedron/combinatorial_polyhedron') +py.install_sources( + 'all.py', + subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', +) extension_data = { 'base' : files('base.pyx'), @@ -7,16 +10,17 @@ extension_data = { 'face_iterator' : files('face_iterator.pyx'), 'face_list_data_structure' : files('face_list_data_structure.pyx'), 'list_of_faces' : files('list_of_faces.pyx'), - 'polyhedron_face_lattice' : files('polyhedron_face_lattice.pyx') + 'polyhedron_face_lattice' : files('polyhedron_face_lattice.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/geometry/polyhedron/meson.build b/src/sage/geometry/polyhedron/meson.build index e0715d1ae83..3b07bbdd9a5 100644 --- a/src/sage/geometry/polyhedron/meson.build +++ b/src/sage/geometry/polyhedron/meson.build @@ -36,7 +36,7 @@ py.install_sources( 'ppl_lattice_polygon.py', 'ppl_lattice_polytope.py', 'representation.py', - subdir : 'sage/geometry/polyhedron' + subdir: 'sage/geometry/polyhedron', ) subdir('combinatorial_polyhedron') diff --git a/src/sage/geometry/triangulation/meson.build b/src/sage/geometry/triangulation/meson.build index 3f46a95464f..9418fb3b74f 100644 --- a/src/sage/geometry/triangulation/meson.build +++ b/src/sage/geometry/triangulation/meson.build @@ -1,17 +1,23 @@ -py.install_sources('all.py', 'element.py', 'point_configuration.py', subdir : 'sage/geometry/triangulation') +py.install_sources( + 'all.py', + 'element.py', + 'point_configuration.py', + subdir: 'sage/geometry/triangulation', +) extension_data_cpp = { - 'base': files('base.pyx', 'functions.cc', 'data.cc', 'triangulations.cc'), + 'base': files('base.pyx', 'data.cc', 'functions.cc', 'triangulations.cc'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/geometry/triangulation', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/geometry/triangulation', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index d665f801b86..92e205ceb81 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -9,7 +9,7 @@ py.install_sources( 'static_dense_graph.pxd', 'static_sparse_backend.pxd', 'static_sparse_graph.pxd', - subdir : 'sage/graphs/base' + subdir: 'sage/graphs/base', ) extension_data = { @@ -17,33 +17,35 @@ extension_data = { 'graph_backends' : files('graph_backends.pyx'), 'sparse_graph' : files('sparse_graph.pyx'), 'static_dense_graph' : files('static_dense_graph.pyx'), - 'static_sparse_backend' : files('static_sparse_backend.pyx') + 'static_sparse_backend' : files('static_sparse_backend.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs/base', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs/base', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach extension_data_cpp = { - 'boost_graph': files('boost_graph.pyx'), - 'c_graph': files('c_graph.pyx'), - 'static_sparse_graph': files('static_sparse_graph.pyx'), + 'boost_graph': files('boost_graph.pyx'), + 'c_graph': files('c_graph.pyx'), + 'static_sparse_graph': files('static_sparse_graph.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs/base', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs/base', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/graphs/generators/meson.build b/src/sage/graphs/generators/meson.build index a52efc9c474..44542f2631e 100644 --- a/src/sage/graphs/generators/meson.build +++ b/src/sage/graphs/generators/meson.build @@ -10,20 +10,19 @@ py.install_sources( 'random.py', 'smallgraphs.py', 'world_map.py', - subdir : 'sage/graphs/generators' + subdir: 'sage/graphs/generators', ) -extension_data = { - 'distance_regular' : files('distance_regular.pyx') -} +extension_data = {'distance_regular' : files('distance_regular.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs/generators', - install: true, - include_directories: [], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs/generators', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 69d4085b920..9a35e992bdc 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -10,7 +10,7 @@ py.install_sources( 'rankwidth.pxd', 'tree_decomposition.pxd', 'vertex_separation.pxd', - subdir : 'sage/graphs/graph_decompositions' + subdir: 'sage/graphs/graph_decompositions', ) extension_data = { @@ -20,42 +20,45 @@ extension_data = { 'graph_products' : files('graph_products.pyx'), 'rankwidth' : files('rankwidth.pyx'), 'tree_decomposition' : files('tree_decomposition.pyx'), - 'vertex_separation' : files('vertex_separation.pyx') + 'vertex_separation' : files('vertex_separation.pyx'), + 'slice_decomposition' : files('slice_decomposition.pyx'), + 'tdlib' : files('tdlib.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs/graph_decompositions', - install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, gmp, rw], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs/graph_decompositions', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, gmp, rw], + ) endforeach -extension_data_cpp = { - 'clique_separators': files('clique_separators.pyx'), -} +extension_data_cpp = {'clique_separators': files('clique_separators.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs/graph_decompositions', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, gmp, rw], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs/graph_decompositions', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, gmp, rw], + ) endforeach if tdlib.found() - py.extension_module('tdlib', - sources: 'tdlib.pyx', - subdir: 'sage/graphs/graph_decompositions', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, tdlib], - ) + py.extension_module( + 'tdlib', + sources: 'tdlib.pyx', + subdir: 'sage/graphs/graph_decompositions', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, tdlib], + ) endif diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 7cca4b0fc2f..6ed7ee94656 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -12,6 +12,7 @@ py.install_sources( 'all__sagemath_tdlib.py', 'bipartite_graph.py', 'cliquer.pxd', + 'cographs.py', 'connectivity.pxd', 'convexity_properties.pxd', 'digraph.py', @@ -43,7 +44,7 @@ py.install_sources( 'traversals.pxd', 'trees.pxd', 'tutte_polynomial.py', - subdir : 'sage/graphs' + subdir: 'sage/graphs', ) extension_data = { @@ -68,55 +69,81 @@ extension_data = { 'strongly_regular_db' : files('strongly_regular_db.pyx'), 'trees' : files('trees.pyx'), 'views' : files('views.pyx'), - 'weakly_chordal' : files('weakly_chordal.pyx') + 'weakly_chordal' : files('weakly_chordal.pyx'), + 'bliss' : files('bliss.pyx'), + 'mcqd' : files('mcqd.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, cliquer, flint, gmp, planarity], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs', + install: true, + include_directories: [ + inc_cpython, + inc_data_structures, + inc_flint, + inc_rings, + ], + dependencies: [py_dep, cysignals, cliquer, flint, gmp, planarity], + ) endforeach extension_data_cpp = { - 'edge_connectivity': files('edge_connectivity.pyx'), - 'graph_coloring': files('graph_coloring.pyx'), - 'path_enumeration': files('path_enumeration.pyx'), - 'traversals': files('traversals.pyx'), + 'edge_connectivity': files('edge_connectivity.pyx'), + 'graph_coloring': files('graph_coloring.pyx'), + 'path_enumeration': files('path_enumeration.pyx'), + 'traversals': files('traversals.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/graphs', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp, planarity], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/graphs', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_data_structures, + inc_flint, + inc_rings, + ], + dependencies: [py_dep, cysignals, flint, gmp, planarity], + ) endforeach if bliss.found() - py.extension_module('bliss', - sources: files('bliss.pyx'), - subdir: 'sage/graphs', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, bliss], - ) + py.extension_module( + 'bliss', + sources: files('bliss.pyx'), + subdir: 'sage/graphs', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_data_structures, + inc_flint, + inc_rings, + ], + dependencies: [py_dep, cysignals, bliss], + ) endif if mcqd.found() - py.extension_module('mcqd', - sources: files('mcqd.pyx'), - subdir: 'sage/graphs', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, mcqd], - ) + py.extension_module( + 'mcqd', + sources: files('mcqd.pyx'), + subdir: 'sage/graphs', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_data_structures, + inc_flint, + inc_rings, + ], + dependencies: [py_dep, cysignals, mcqd], + ) endif subdir('base') diff --git a/src/sage/groups/matrix_gps/meson.build b/src/sage/groups/matrix_gps/meson.build index c8497f50a19..c33d0b939a7 100644 --- a/src/sage/groups/matrix_gps/meson.build +++ b/src/sage/groups/matrix_gps/meson.build @@ -22,21 +22,22 @@ py.install_sources( 'symplectic_gap.py', 'unitary.py', 'unitary_gap.py', - subdir : 'sage/groups/matrix_gps' + subdir: 'sage/groups/matrix_gps', ) extension_data = { 'group_element' : files('group_element.pyx'), - 'group_element_gap' : files('group_element_gap.pyx') + 'group_element_gap' : files('group_element_gap.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/groups/matrix_gps', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/groups/matrix_gps', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/groups/meson.build b/src/sage/groups/meson.build index 0584d878813..3e2ffbb471c 100644 --- a/src/sage/groups/meson.build +++ b/src/sage/groups/meson.build @@ -27,23 +27,24 @@ py.install_sources( 'old.pxd', 'pari_group.py', 'raag.py', - subdir : 'sage/groups' + subdir: 'sage/groups', ) extension_data = { 'group' : files('group.pyx'), 'libgap_wrapper' : files('libgap_wrapper.pyx'), - 'old' : files('old.pyx') + 'old' : files('old.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/groups', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/groups', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach install_subdir('abelian_gps', install_dir: sage_install_dir / 'groups') diff --git a/src/sage/groups/perm_gps/meson.build b/src/sage/groups/perm_gps/meson.build index 2c6fca471a9..9d6ce926c5f 100644 --- a/src/sage/groups/perm_gps/meson.build +++ b/src/sage/groups/perm_gps/meson.build @@ -7,21 +7,20 @@ py.install_sources( 'permgroup_named.py', 'permutation_groups_catalog.py', 'symgp_conjugacy_class.py', - subdir : 'sage/groups/perm_gps' + subdir: 'sage/groups/perm_gps', ) -extension_data = { - 'permgroup_element' : files('permgroup_element.pyx') -} +extension_data = {'permgroup_element' : files('permgroup_element.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/groups/perm_gps', - install: true, - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, gap, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/groups/perm_gps', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, gap, gmp], + ) endforeach subdir('partn_ref') diff --git a/src/sage/groups/perm_gps/partn_ref/meson.build b/src/sage/groups/perm_gps/partn_ref/meson.build index dc4bc64825e..3ceae247e3b 100644 --- a/src/sage/groups/perm_gps/partn_ref/meson.build +++ b/src/sage/groups/perm_gps/partn_ref/meson.build @@ -1,7 +1,9 @@ -py.install_sources('all.py', subdir : 'sage/groups/perm_gps/partn_ref') +py.install_sources('all.py', subdir: 'sage/groups/perm_gps/partn_ref') extension_data = { - 'automorphism_group_canonical_label' : files('automorphism_group_canonical_label.pyx'), + 'automorphism_group_canonical_label' : files( + 'automorphism_group_canonical_label.pyx', + ), 'canonical_augmentation' : files('canonical_augmentation.pyx'), 'data_structures' : files('data_structures.pyx'), 'double_coset' : files('double_coset.pyx'), @@ -10,16 +12,17 @@ extension_data = { 'refinement_lists' : files('refinement_lists.pyx'), 'refinement_matrices' : files('refinement_matrices.pyx'), 'refinement_python' : files('refinement_python.pyx'), - 'refinement_sets' : files('refinement_sets.pyx') + 'refinement_sets' : files('refinement_sets.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/groups/perm_gps/partn_ref', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/groups/perm_gps/partn_ref', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/groups/perm_gps/partn_ref2/meson.build b/src/sage/groups/perm_gps/partn_ref2/meson.build index 6f066ad2f4a..e89375a105d 100644 --- a/src/sage/groups/perm_gps/partn_ref2/meson.build +++ b/src/sage/groups/perm_gps/partn_ref2/meson.build @@ -1,16 +1,15 @@ -py.install_sources('all.py', subdir : 'sage/groups/perm_gps/partn_ref2') +py.install_sources('all.py', subdir: 'sage/groups/perm_gps/partn_ref2') -extension_data = { - 'refinement_generic' : files('refinement_generic.pyx') -} +extension_data = {'refinement_generic' : files('refinement_generic.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/groups/perm_gps/partn_ref2', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_partn_ref2], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/groups/perm_gps/partn_ref2', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_partn_ref2], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/groups/semimonomial_transformations/meson.build b/src/sage/groups/semimonomial_transformations/meson.build index 88b4e6d20c2..71d7576574a 100644 --- a/src/sage/groups/semimonomial_transformations/meson.build +++ b/src/sage/groups/semimonomial_transformations/meson.build @@ -1,16 +1,21 @@ -py.install_sources('all.py', 'semimonomial_transformation_group.py', subdir : 'sage/groups/semimonomial_transformations') +py.install_sources( + 'all.py', + 'semimonomial_transformation_group.py', + subdir: 'sage/groups/semimonomial_transformations', +) extension_data = { - 'semimonomial_transformation' : files('semimonomial_transformation.pyx') + 'semimonomial_transformation' : files('semimonomial_transformation.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/groups/semimonomial_transformations', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/groups/semimonomial_transformations', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/interacts/meson.build b/src/sage/interacts/meson.build index 5cefd7dedf8..4889c06f9fa 100644 --- a/src/sage/interacts/meson.build +++ b/src/sage/interacts/meson.build @@ -6,20 +6,19 @@ py.install_sources( 'geometry.py', 'library.py', 'statistics.py', - subdir : 'sage/interacts' + subdir: 'sage/interacts', ) -extension_data = { - 'library_cython' : files('library_cython.pyx') -} +extension_data = {'library_cython' : files('library_cython.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/interacts', - install: true, - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/interacts', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build index 79d1f3844c8..17b59fafee5 100644 --- a/src/sage/interfaces/meson.build +++ b/src/sage/interfaces/meson.build @@ -3,7 +3,6 @@ py.install_sources( 'all.py', 'all__sagemath_polyhedra.py', 'axiom.py', - 'chomp.py', 'cleaner.py', 'ecm.py', 'expect.py', @@ -58,21 +57,22 @@ py.install_sources( 'tachyon.py', 'tests.py', 'tides.py', - subdir : 'sage/interfaces' + subdir: 'sage/interfaces', ) extension_data = { 'process' : files('process.pyx'), - 'sagespawn' : files('sagespawn.pyx') + 'sagespawn' : files('sagespawn.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/interfaces', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/interfaces', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/lfunctions/meson.build b/src/sage/lfunctions/meson.build index 5252b506e14..cf0ffe05e17 100644 --- a/src/sage/lfunctions/meson.build +++ b/src/sage/lfunctions/meson.build @@ -4,20 +4,19 @@ py.install_sources( 'lcalc.py', 'pari.py', 'sympow.py', - subdir : 'sage/lfunctions' + subdir: 'sage/lfunctions', ) -extension_data = { - 'zero_sums' : files('zero_sums.pyx') -} +extension_data = {'zero_sums' : files('zero_sums.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/lfunctions', - install: true, - include_directories: [inc_flint], - dependencies: [py_dep, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/lfunctions', + install: true, + include_directories: [inc_flint], + dependencies: [py_dep, flint, gmp], + ) endforeach diff --git a/src/sage/libs/arb/meson.build b/src/sage/libs/arb/meson.build index 375b45f673c..aa98fb8ff3a 100644 --- a/src/sage/libs/arb/meson.build +++ b/src/sage/libs/arb/meson.build @@ -15,20 +15,19 @@ py.install_sources( 'bernoulli.pxd', 'mag.pxd', 'types.pxd', - subdir : 'sage/libs/arb' + subdir: 'sage/libs/arb', ) -extension_data = { - 'arith' : files('arith.pyx') -} +extension_data = {'arith' : files('arith.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/arb', - install: true, - include_directories: [inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, flint, gmp, mpfr], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/arb', + install: true, + include_directories: [inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, flint, gmp, mpfr], + ) endforeach diff --git a/src/sage/libs/coxeter3/meson.build b/src/sage/libs/coxeter3/meson.build index 1c5505c9aa0..1db4d85d3f2 100644 --- a/src/sage/libs/coxeter3/meson.build +++ b/src/sage/libs/coxeter3/meson.build @@ -5,24 +5,23 @@ py.install_sources( 'coxeter.pxd', 'coxeter_group.py', 'decl.pxd', - subdir : 'sage/libs/coxeter3' + subdir: 'sage/libs/coxeter3', ) if coxeter3.found() - extension_data_cpp = { - 'coxeter': files('coxeter.pyx'), - } + extension_data_cpp = {'coxeter': files('coxeter.pyx')} - foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/coxeter3', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, cysignals, coxeter3], - ) - endforeach + foreach name, pyx : extension_data_cpp + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/coxeter3', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals, coxeter3], + ) + endforeach endif diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index e7d224188cb..0684bca69ca 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -6,24 +6,25 @@ py.install_sources( 'interface.py', 'mat.pxd', 'newforms.pxd', - subdir : 'sage/libs/eclib' + subdir: 'sage/libs/eclib', ) extension_data_cpp = { - 'homspace': files('homspace.pyx'), - 'mat': files('mat.pyx'), - 'mwrank': files('mwrank.pyx'), - 'newforms': files('newforms.pyx'), + 'homspace': files('homspace.pyx'), + 'mat': files('mat.pyx'), + 'mwrank': files('mwrank.pyx'), + 'newforms': files('newforms.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/eclib', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, ec, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/eclib', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, cysignals, ec, flint, gmp], + ) endforeach diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index f94394218ed..3b73d34741f 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -28,7 +28,7 @@ py.install_sources( 'thread_pool.pxd', 'types.pxd', 'ulong_extras.pxd', - subdir : 'sage/libs/flint' + subdir: 'sage/libs/flint', ) extension_data = { @@ -42,16 +42,17 @@ extension_data = { 'qsieve' : files('qsieve.pyx'), 'qsieve_sage' : files('qsieve_sage.pyx'), 'ulong_extras' : files('ulong_extras.pyx'), - 'ulong_extras_sage' : files('ulong_extras_sage.pyx') + 'ulong_extras_sage' : files('ulong_extras_sage.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/flint', - install: true, - include_directories: [inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp, mpfr], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/flint', + install: true, + include_directories: [inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp, mpfr], + ) endforeach diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index e992c11a8a1..5066020abee 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -13,22 +13,23 @@ py.install_sources( 'test.py', 'test_long.py', 'util.pxd', - subdir : 'sage/libs/gap' + subdir: 'sage/libs/gap', ) extension_data = { 'element' : files('element.pyx'), 'libgap' : files('libgap.pyx'), - 'util' : files('util.pyx') + 'util' : files('util.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/gap', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gap, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/gap', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gap, gmp], + ) endforeach diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index 623bd2984a5..bee0907d368 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -1,19 +1,18 @@ giac = cc.find_library('giac', required: false) -py.install_sources('__init__.py', 'giac.pxd', 'misc.h', subdir : 'sage/libs/giac') +py.install_sources('__init__.py', 'giac.pxd', 'misc.h', subdir: 'sage/libs/giac') -extension_data_cpp = { - 'giac': files('giac.pyx'), -} +extension_data_cpp = {'giac': files('giac.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/giac', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, giac, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/giac', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, giac, gmp], + ) endforeach diff --git a/src/sage/libs/glpk/meson.build b/src/sage/libs/glpk/meson.build index d3c321906ef..ee265cc1579 100644 --- a/src/sage/libs/glpk/meson.build +++ b/src/sage/libs/glpk/meson.build @@ -5,20 +5,5 @@ py.install_sources( 'graph.pxd', 'lp.pxd', 'types.pxd', - subdir : 'sage/libs/glpk' + subdir: 'sage/libs/glpk', ) - -extension_data = { - 'error' : files('error.pyx') -} - -foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/glpk', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, glpk, gmp], - ) -endforeach - diff --git a/src/sage/libs/gmp/meson.build b/src/sage/libs/gmp/meson.build index 08809fa27a4..31fb4f3a5fa 100644 --- a/src/sage/libs/gmp/meson.build +++ b/src/sage/libs/gmp/meson.build @@ -11,20 +11,19 @@ py.install_sources( 'random.pxd', 'randomize.pxd', 'types.pxd', - subdir : 'sage/libs/gmp' + subdir: 'sage/libs/gmp', ) -extension_data = { - 'pylong' : files('pylong.pyx') -} +extension_data = {'pylong' : files('pylong.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/gmp', - install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/gmp', + install: true, + include_directories: [inc_cpython], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/libs/gsl/meson.build b/src/sage/libs/gsl/meson.build index 104f7d8058c..ea5eac5e93a 100644 --- a/src/sage/libs/gsl/meson.build +++ b/src/sage/libs/gsl/meson.build @@ -64,20 +64,19 @@ py.install_sources( 'vector_complex.pxd', 'wavelet.pxd', 'zeta.pxd', - subdir : 'sage/libs/gsl' + subdir: 'sage/libs/gsl', ) -extension_data = { - 'array' : files('array.pyx') -} +extension_data = {'array' : files('array.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/gsl', - install: true, - include_directories: [inc_gsl], - dependencies: [py_dep, cysignals, gmp, gsl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/gsl', + install: true, + include_directories: [inc_gsl], + dependencies: [py_dep, cysignals, gmp, gsl], + ) endforeach diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build index 11c2f1e264f..bb89cac48a2 100644 --- a/src/sage/libs/lcalc/meson.build +++ b/src/sage/libs/lcalc/meson.build @@ -1,24 +1,33 @@ # Once https://github.com/mesonbuild/meson/pull/12616 is released, we can simply do the following: # lcalc = dependency('lcalc', version: '>= 2.0.0') -lcalc = dependency('lcalc', version: '>= 2.0.0', required: false, allow_fallback: false) +lcalc = dependency( + 'lcalc', + version: '>= 2.0.0', + required: false, + allow_fallback: false, +) if not lcalc.found() - lcalc = subproject('lcalc').get_variable('lcalc_dep') + lcalc = subproject('lcalc').get_variable('lcalc_dep') endif -py.install_sources('__init__.py', 'lcalc_Lfunction.pxd', 'lcalc_sage.h', subdir : 'sage/libs/lcalc') +py.install_sources( + '__init__.py', + 'lcalc_Lfunction.pxd', + 'lcalc_sage.h', + subdir: 'sage/libs/lcalc', +) -extension_data_cpp = { - 'lcalc_Lfunction': files('lcalc_Lfunction.pyx'), -} +extension_data_cpp = {'lcalc_Lfunction': files('lcalc_Lfunction.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/lcalc', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cypari2, cysignals, gmp, lcalc, m, mpfr, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/lcalc', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cypari2, cysignals, gmp, lcalc, m, mpfr, ntl], + ) endforeach diff --git a/src/sage/libs/linbox/meson.build b/src/sage/libs/linbox/meson.build index 70633ced83e..252a6ae0f9e 100644 --- a/src/sage/libs/linbox/meson.build +++ b/src/sage/libs/linbox/meson.build @@ -5,21 +5,22 @@ py.install_sources( 'givaro.pxd', 'linbox.pxd', 'linbox_flint_interface.pxd', - subdir : 'sage/libs/linbox' + subdir: 'sage/libs/linbox', ) extension_data_cpp = { - 'linbox_flint_interface': files('linbox_flint_interface.pyx'), + 'linbox_flint_interface': files('linbox_flint_interface.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/linbox', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_flint], - dependencies: [py_dep, blas, flint, fplll, givaro, gmp, gmpxx, linbox], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/linbox', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_flint], + dependencies: [py_dep, blas, flint, fplll, givaro, gmp, gmpxx, linbox], + ) endforeach diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 5c6b3efcc15..2b7945f9c99 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -15,45 +15,58 @@ py.install_sources( 'm4ri.pxd', 'm4rie.pxd', 'meataxe.pxd', - subdir : 'sage/libs' + subdir: 'sage/libs', ) extension_data = { 'ecl' : files('ecl.pyx'), 'homfly' : files('homfly.pyx'), - 'libecm' : files('libecm.pyx') + 'libecm' : files('libecm.pyx'), + 'meataxe' : files('meataxe.pyx'), + 'sirocco' : files('sirocco.pyx'), } -dependencies = [py_dep, braiding, cysignals, ecl, ecm, gc, gmp, homfly, mtx, sirocco] +dependencies = [ + py_dep, + braiding, + cysignals, + ecl, + ecm, + gc, + gmp, + homfly, + mtx, + sirocco, +] if sirocco.found() - #extension_data['sirocco'] += files('sirocco.pxd') # not yet on conda - dependencies += [sirocco] + #extension_data['sirocco'] += files('sirocco.pxd') # not yet on conda + dependencies += [sirocco] endif foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: dependencies, - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: dependencies, + ) endforeach -extension_data_cpp = { - 'braiding': files('braiding.pyx'), -} +extension_data_cpp = {'braiding': files('braiding.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_rings], - dependencies: dependencies, - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: dependencies, + ) endforeach subdir('arb') diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build index c656d5be110..bfc1e51723e 100644 --- a/src/sage/libs/mpmath/meson.build +++ b/src/sage/libs/mpmath/meson.build @@ -1,19 +1,25 @@ -py.install_sources('__init__.py', 'all.py', 'utils.pxd', subdir : 'sage/libs/mpmath') +py.install_sources( + '__init__.py', + 'all.py', + 'utils.pxd', + subdir: 'sage/libs/mpmath', +) extension_data = { 'ext_impl' : files('ext_impl.pyx'), 'ext_libmp' : files('ext_libmp.pyx'), 'ext_main' : files('ext_main.pyx'), - 'utils' : files('utils.pyx') + 'utils' : files('utils.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/mpmath', - install: true, - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cypari2, cysignals, gmp, mpfr], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/mpmath', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cypari2, cysignals, gmp, mpfr], + ) endforeach diff --git a/src/sage/libs/ntl/meson.build b/src/sage/libs/ntl/meson.build index cd75a03cd19..7f78db280fe 100644 --- a/src/sage/libs/ntl/meson.build +++ b/src/sage/libs/ntl/meson.build @@ -43,41 +43,48 @@ py.install_sources( 'types.pxd', 'vec_GF2.pxd', 'vec_GF2E.pxd', - subdir : 'sage/libs/ntl' + subdir: 'sage/libs/ntl', ) extension_data_cpp = { - 'convert': files('convert.pyx'), - 'error': files('error.pyx'), - 'ntl_GF2': files('ntl_GF2.pyx'), - 'ntl_GF2E': files('ntl_GF2E.pyx'), - 'ntl_GF2EContext': files('ntl_GF2EContext.pyx'), - 'ntl_GF2EX': files('ntl_GF2EX.pyx'), - 'ntl_GF2X': files('ntl_GF2X.pyx'), - 'ntl_ZZ': files('ntl_ZZ.pyx'), - 'ntl_ZZX': files('ntl_ZZX.pyx'), - 'ntl_ZZ_p': files('ntl_ZZ_p.pyx'), - 'ntl_ZZ_pContext': files('ntl_ZZ_pContext.pyx'), - 'ntl_ZZ_pE': files('ntl_ZZ_pE.pyx'), - 'ntl_ZZ_pEContext': files('ntl_ZZ_pEContext.pyx'), - 'ntl_ZZ_pEX': files('ntl_ZZ_pEX.pyx'), - 'ntl_ZZ_pX': files('ntl_ZZ_pX.pyx'), - 'ntl_lzz_p': files('ntl_lzz_p.pyx'), - 'ntl_lzz_pContext': files('ntl_lzz_pContext.pyx'), - 'ntl_lzz_pX': files('ntl_lzz_pX.pyx'), - 'ntl_mat_GF2': files('ntl_mat_GF2.pyx'), - 'ntl_mat_GF2E': files('ntl_mat_GF2E.pyx'), - 'ntl_mat_ZZ': files('ntl_mat_ZZ.pyx'), + 'convert': files('convert.pyx'), + 'error': files('error.pyx'), + 'ntl_GF2': files('ntl_GF2.pyx'), + 'ntl_GF2E': files('ntl_GF2E.pyx'), + 'ntl_GF2EContext': files('ntl_GF2EContext.pyx'), + 'ntl_GF2EX': files('ntl_GF2EX.pyx'), + 'ntl_GF2X': files('ntl_GF2X.pyx'), + 'ntl_ZZ': files('ntl_ZZ.pyx'), + 'ntl_ZZX': files('ntl_ZZX.pyx'), + 'ntl_ZZ_p': files('ntl_ZZ_p.pyx'), + 'ntl_ZZ_pContext': files('ntl_ZZ_pContext.pyx'), + 'ntl_ZZ_pE': files('ntl_ZZ_pE.pyx'), + 'ntl_ZZ_pEContext': files('ntl_ZZ_pEContext.pyx'), + 'ntl_ZZ_pEX': files('ntl_ZZ_pEX.pyx'), + 'ntl_ZZ_pX': files('ntl_ZZ_pX.pyx'), + 'ntl_lzz_p': files('ntl_lzz_p.pyx'), + 'ntl_lzz_pContext': files('ntl_lzz_pContext.pyx'), + 'ntl_lzz_pX': files('ntl_lzz_pX.pyx'), + 'ntl_mat_GF2': files('ntl_mat_GF2.pyx'), + 'ntl_mat_GF2E': files('ntl_mat_GF2E.pyx'), + 'ntl_mat_ZZ': files('ntl_mat_ZZ.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/ntl', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cysignals, gmp, m, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/ntl', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_ntl, + inc_rings, + inc_rings_finite, + ], + dependencies: [py_dep, cysignals, gmp, m, ntl], + ) endforeach diff --git a/src/sage/libs/pari/meson.build b/src/sage/libs/pari/meson.build index 1dee2a1795c..5952060267c 100644 --- a/src/sage/libs/pari/meson.build +++ b/src/sage/libs/pari/meson.build @@ -9,7 +9,7 @@ py.install_sources( 'convert_sage_real_mpfr.pxd', 'misc.pxd', 'tests.py', - subdir : 'sage/libs/pari' + subdir: 'sage/libs/pari', ) extension_data = { @@ -20,16 +20,17 @@ extension_data = { 'convert_sage_matrix' : files('convert_sage_matrix.pyx'), 'convert_sage_real_double' : files('convert_sage_real_double.pyx'), 'convert_sage_real_mpfr' : files('convert_sage_real_mpfr.pyx'), - 'misc' : files('misc.pyx') + 'misc' : files('misc.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/pari', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, gsl, mpfr, pari], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/pari', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, gsl, mpfr, pari], + ) endforeach diff --git a/src/sage/libs/singular/meson.build b/src/sage/libs/singular/meson.build index cb0d0709354..52ece586caa 100644 --- a/src/sage/libs/singular/meson.build +++ b/src/sage/libs/singular/meson.build @@ -8,26 +8,27 @@ py.install_sources( 'ring.pxd', 'singular.pxd', 'standard_options.py', - subdir : 'sage/libs/singular' + subdir: 'sage/libs/singular', ) extension_data_cpp = { - 'function': files('function.pyx'), - 'groebner_strategy': files('groebner_strategy.pyx'), - 'option': files('option.pyx'), - 'polynomial': files('polynomial.pyx'), - 'ring': files('ring.pyx'), - 'singular': files('singular.pyx'), + 'function': files('function.pyx'), + 'groebner_strategy': files('groebner_strategy.pyx'), + 'option': files('option.pyx'), + 'polynomial': files('polynomial.pyx'), + 'ring': files('ring.pyx'), + 'singular': files('singular.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/singular', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cysignals, givaro, gmp, singular], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/singular', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ntl, inc_rings, inc_rings_finite], + dependencies: [py_dep, cysignals, givaro, gmp, singular], + ) endforeach diff --git a/src/sage/libs/symmetrica/meson.build b/src/sage/libs/symmetrica/meson.build index c9bcc51885d..9294ebe3b03 100644 --- a/src/sage/libs/symmetrica/meson.build +++ b/src/sage/libs/symmetrica/meson.build @@ -1,19 +1,18 @@ # Cannot be found by pkg-config symmetrica = cc.find_library('symmetrica') -py.install_sources('__init__.py', 'all.py', subdir : 'sage/libs/symmetrica') +py.install_sources('__init__.py', 'all.py', subdir: 'sage/libs/symmetrica') -extension_data = { - 'symmetrica' : files('symmetrica.pyx') -} +extension_data = {'symmetrica' : files('symmetrica.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/libs/symmetrica', - install: true, - include_directories: [], - dependencies: [py_dep, cysignals, gmp, symmetrica], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/symmetrica', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp, symmetrica], + ) endforeach diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 311ba17592b..0ca0cf22efe 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -1,14 +1,30 @@ # Cannot be found via pkg-config -meataxe = cc.find_library('meataxe', required: false, disabler : true) +meataxe = cc.find_library('meataxe', required: false, disabler: true) iml = cc.find_library('iml') if meataxe.found() - py.install_sources('all__sagemath_meataxe.py') + py.install_sources( + 'all.py', + 'all__sagemath_meataxe.py', + 'benchmark.py', + 'berlekamp_massey.py', + 'compute_J_ideal.py', + 'docs.py', + 'matrix_integer_dense_hnf.py', + 'matrix_integer_dense_saturation.py', + 'matrix_misc.py', + 'matrix_space.py', + 'operation_table.py', + 'special.py', + 'symplectic_basis.py', + 'tests.py', + ) endif py.install_sources( '__init__.py', 'all.py', + 'all__sagemath_meataxe.py', 'benchmark.py', 'berlekamp_massey.py', 'compute_J_ideal.py', @@ -21,7 +37,7 @@ py.install_sources( 'special.py', 'symplectic_basis.py', 'tests.py', - subdir : 'sage/matrix' + subdir: 'sage/matrix', ) extension_data = { @@ -43,7 +59,9 @@ extension_data = { 'matrix_generic_dense' : files('matrix_generic_dense.pyx'), 'matrix_generic_sparse' : files('matrix_generic_sparse.pyx'), 'matrix_gfpn_dense' : files('matrix_gfpn_dense.pyx'), - 'matrix_laurent_mpolynomial_dense' : files('matrix_laurent_mpolynomial_dense.pyx'), + 'matrix_laurent_mpolynomial_dense' : files( + 'matrix_laurent_mpolynomial_dense.pyx', + ), 'matrix_numpy_dense' : files('matrix_numpy_dense.pyx'), 'matrix_numpy_integer_dense' : files('matrix_numpy_integer_dense.pyx'), 'matrix_polynomial_dense' : files('matrix_polynomial_dense.pyx'), @@ -56,45 +74,110 @@ extension_data = { 'misc' : files('misc.pyx'), 'misc_flint' : files('misc_flint.pyx'), 'misc_mpfr' : files('misc_mpfr.pyx'), - 'strassen' : files('strassen.pyx') + 'strassen' : files('strassen.pyx'), } foreach name, pyx : extension_data - dependencies = [py_dep, blas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, zlib] - if name == 'matrix_gfpn_dense' - dependencies += [meataxe] - endif + dependencies = [ + py_dep, + blas, + cypari2, + cysignals, + fflas, + flint, + gd, + givaro, + gmp, + gmpxx, + iml, + linbox, + m, + m4ri, + m4rie, + mpfi, + mpfr, + mtx, + ntl, + pari, + png, + zlib, + ] + if name == 'matrix_gfpn_dense' + dependencies += [meataxe] + endif - py.extension_module(name, - sources: pyx, - subdir: 'sage/matrix', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: dependencies, - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/matrix', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_ntl, + inc_numpy, + inc_rings, + inc_rings_finite, + ], + dependencies: dependencies, + ) endforeach extension_data_cpp = { - 'matrix_cyclo_dense': files('matrix_cyclo_dense.pyx'), - 'matrix_gf2e_dense': files('matrix_gf2e_dense.pyx'), - 'matrix_integer_dense': files('matrix_integer_dense.pyx'), - 'matrix_integer_sparse': files('matrix_integer_sparse.pyx'), - 'matrix_mod2_dense': files('matrix_mod2_dense.pyx'), - 'matrix_modn_dense_double': files('matrix_modn_dense_double.pyx'), - 'matrix_modn_dense_float': files('matrix_modn_dense_float.pyx'), - 'matrix_modn_sparse': files('matrix_modn_sparse.pyx'), - 'matrix_mpolynomial_dense': files('matrix_mpolynomial_dense.pyx'), - 'matrix_rational_dense': files('matrix_rational_dense.pyx'), + 'matrix_cyclo_dense': files('matrix_cyclo_dense.pyx'), + 'matrix_gf2e_dense': files('matrix_gf2e_dense.pyx'), + 'matrix_integer_dense': files('matrix_integer_dense.pyx'), + 'matrix_integer_sparse': files('matrix_integer_sparse.pyx'), + 'matrix_mod2_dense': files('matrix_mod2_dense.pyx'), + 'matrix_modn_dense_double': files('matrix_modn_dense_double.pyx'), + 'matrix_modn_dense_float': files('matrix_modn_dense_float.pyx'), + 'matrix_modn_sparse': files('matrix_modn_sparse.pyx'), + 'matrix_mpolynomial_dense': files('matrix_mpolynomial_dense.pyx'), + 'matrix_rational_dense': files('matrix_rational_dense.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/matrix', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, blas, cypari2, cysignals, fflas, flint, gd, givaro, gmp, gmpxx, iml, linbox, m, m4ri, m4rie, mpfi, mpfr, mtx, ntl, pari, png, singular, zlib], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/matrix', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_ntl, + inc_numpy, + inc_rings, + inc_rings_finite, + ], + dependencies: [ + py_dep, + blas, + cypari2, + cysignals, + fflas, + flint, + gd, + givaro, + gmp, + gmpxx, + iml, + linbox, + m, + m4ri, + m4rie, + mpfi, + mpfr, + mtx, + ntl, + pari, + png, + singular, + zlib, + ], + ) endforeach diff --git a/src/sage/matroids/meson.build b/src/sage/matroids/meson.build index 6c0976521ee..49031ed84d6 100644 --- a/src/sage/matroids/meson.build +++ b/src/sage/matroids/meson.build @@ -6,14 +6,13 @@ py.install_sources( 'database_collections.py', 'database_matroids.py', 'dual_matroid.py', - 'graphic_matroid.py', 'matroids_catalog.py', 'matroids_plot_helpers.py', 'minor_matroid.py', 'named_matroids.py', 'rank_matroid.py', 'utilities.py', - subdir : 'sage/matroids' + subdir: 'sage/matroids', ) extension_data = { @@ -27,16 +26,19 @@ extension_data = { 'matroid' : files('matroid.pyx'), 'set_system' : files('set_system.pyx'), 'union_matroid' : files('union_matroid.pyx'), - 'unpickling' : files('unpickling.pyx') + 'unpickling' : files('unpickling.pyx'), + 'flats_matroid' : files('flats_matroid.pyx'), + 'graphic_matroid' : files('graphic_matroid.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/matroids', - install: true, - include_directories: [inc_cpython, inc_data_structures, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/matroids', + install: true, + include_directories: [inc_cpython, inc_data_structures, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/meson.build b/src/sage/meson.build index 267223db51e..d478779f814 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -14,7 +14,9 @@ if not fs.is_absolute(datadir) endif conf_data.set('SAGE_SHARE', datadir) if not fs.exists(datadir / 'cremona') - message('Warning: The specified datadir does not contain the necessary Cremona database. Either specify a different datadir or specify a correct the correct path via the environment variable SAGE_SHARE during runtime.') + message( + 'Warning: The specified datadir does not contain the necessary Cremona database. Either specify a different datadir or specify a correct the correct path via the environment variable SAGE_SHARE during runtime.', + ) endif conf_data.set('SAGE_MAXIMA', maxima.full_path()) # Conda's ecl does not have any problems with Maxima, so nothing needs to be set here: @@ -29,47 +31,56 @@ conf_data.set('SAGE_ECL_CONFIG', ecl_config.full_path()) conf_data.set('SAGE_ARCHFLAGS', 'unset') # not needed when using conda, as we then don't build any pc files conf_data.set('SAGE_PKG_CONFIG_PATH', '') -openmp = dependency('openmp', required : false) +openmp = dependency('openmp', required: false) if openmp.found() conf_data.set('OPENMP_CFLAGS', '-fopenmp') conf_data.set('OPENMP_CXXFLAGS', '-fopenmp') endif gap_exe = find_program('gap') if gap_exe.found() - gaprun = run_command(gap_exe, '-r', '-q', '--bare', '--nointeract', '-c', 'Display(JoinStringsWithSeparator(GAPInfo.RootPaths,";"));', check: true) + gaprun = run_command( + gap_exe, + '-r', + '-q', + '--bare', + '--nointeract', + '-c', + 'Display(JoinStringsWithSeparator(GAPInfo.RootPaths,";"));', + check: true, + ) gap_root_paths = gaprun.stdout().strip() gap_root_paths = '${prefix}/lib/gap;${prefix}/share/gap;' + gaprun.stdout().strip() endif conf_data.set('GAP_ROOT_PATHS', gap_root_paths) configure_file( - input: '../../pkgs/sage-conf_conda/_sage_conf/_conf.py.in', - output: 'config.py', - install_dir: py.get_install_dir() / 'sage', - install: true, - configuration: conf_data + input: '../../pkgs/sage-conf_conda/_sage_conf/_conf.py.in', + output: 'config.py', + install_dir: py.get_install_dir() / 'sage', + install: true, + configuration: conf_data, ) # Packages that need no processing and can be installed directly no_processing = [ - 'databases', - 'doctest', - 'ext_data', - 'features', - 'game_theory', - 'homology', - 'knots', - 'logic', - 'manifolds', - 'parallel', - 'repl', - 'sandpiles', - 'tensor', - 'topology', - 'typeset', + 'databases', + 'doctest', + 'ext_data', + 'features', + 'game_theory', + 'homology', + 'knots', + 'logic', + 'manifolds', + 'parallel', + 'repl', + 'sandpiles', + 'tensor', + 'topology', + 'typeset', ] foreach package : no_processing - install_subdir(package, install_dir: sage_install_dir) + install_subdir(package, install_dir: sage_install_dir) endforeach py.install_sources( @@ -88,7 +99,7 @@ py.install_sources( 'all_cmdline.py', 'env.py', 'version.py', - subdir : 'sage' + subdir: 'sage', ) subdir('cpython') diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index 677195baf45..ab61a412852 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -22,7 +22,6 @@ py.install_sources( 'decorators.py', 'defaults.py', 'dev_tools.py', - 'dist.py', 'edit_module.py', 'element_with_label.py', 'explain_pickle.py', @@ -87,7 +86,7 @@ py.install_sources( 'verbose.py', 'viewer.py', 'weak_dict.pxd', - subdir : 'sage/misc' + subdir: 'sage/misc', ) extension_data = { @@ -122,16 +121,17 @@ extension_data = { 'search' : files('search.pyx'), 'session' : files('session.pyx'), 'stopgap' : files('stopgap.pyx'), - 'weak_dict' : files('weak_dict.pyx') + 'weak_dict' : files('weak_dict.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/misc', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/misc', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/modular/arithgroup/meson.build b/src/sage/modular/arithgroup/meson.build index 3fa07c1c87a..c4a68af3217 100644 --- a/src/sage/modular/arithgroup/meson.build +++ b/src/sage/modular/arithgroup/meson.build @@ -9,44 +9,57 @@ py.install_sources( 'congroup_generic.py', 'congroup_sl2z.py', 'tests.py', - subdir : 'sage/modular/arithgroup' + subdir: 'sage/modular/arithgroup', ) extension_data = { 'arithgroup_element' : files('arithgroup_element.pyx'), - 'congroup' : files('congroup.pyx') + 'congroup' : files('congroup.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modular/arithgroup', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modular/arithgroup', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach # Manually create header file, which otherwise is not found farey_symbol_header = custom_target( 'farey_symbol.h', - output : 'farey_symbol.h', - input : 'farey_symbol.pyx', - command : [cython.cmd_array(), '--cplus', '@INPUT@', '-o', '@OUTPUT@', '-I', join_paths(meson.current_source_dir(), '../../../')], + output: 'farey_symbol.h', + input: 'farey_symbol.pyx', + command: [ + cython.cmd_array(), + '--cplus', + '@INPUT@', + '-o', + '@OUTPUT@', + '-I', + join_paths(meson.current_source_dir(), '../../../'), + ], ) extension_data_cpp = { - 'farey_symbol': [files('farey_symbol.pyx', 'sl2z.cpp', 'farey.cpp'), farey_symbol_header[0]], + 'farey_symbol': [ + files('farey.cpp', 'farey_symbol.pyx', 'sl2z.cpp'), + farey_symbol_header[0], + ], } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/modular/arithgroup', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings, inc_src], - dependencies: [py_dep, cysignals, flint, gmp, gmpxx], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modular/arithgroup', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings, inc_src], + dependencies: [py_dep, cysignals, flint, gmp, gmpxx], + ) endforeach diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build index 6c6de88d2a6..2d524cdd8ec 100644 --- a/src/sage/modular/meson.build +++ b/src/sage/modular/meson.build @@ -11,21 +11,20 @@ py.install_sources( 'hypergeometric_motive.py', 'multiple_zeta.py', 'multiple_zeta_F_algebra.py', - subdir : 'sage/modular' + subdir: 'sage/modular', ) -extension_data = { - 'hypergeometric_misc' : files('hypergeometric_misc.pyx') -} +extension_data = {'hypergeometric_misc' : files('hypergeometric_misc.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modular', - install: true, - include_directories: [], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modular', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) endforeach install_subdir('abvar', install_dir: sage_install_dir / 'modular') @@ -34,7 +33,10 @@ install_subdir('btquotients', install_dir: sage_install_dir / 'modular') install_subdir('hecke', install_dir: sage_install_dir / 'modular') install_subdir('local_comp', install_dir: sage_install_dir / 'modular') subdir('modform') -install_subdir('modform_hecketriangle', install_dir: sage_install_dir / 'modular') +install_subdir( + 'modform_hecketriangle', + install_dir: sage_install_dir / 'modular', +) subdir('modsym') install_subdir('overconvergent', install_dir: sage_install_dir / 'modular') subdir('pollack_stevens') diff --git a/src/sage/modular/modform/meson.build b/src/sage/modular/modform/meson.build index 1d9db87c35e..7276059448d 100644 --- a/src/sage/modular/modform/meson.build +++ b/src/sage/modular/modform/meson.build @@ -26,21 +26,22 @@ py.install_sources( 'theta.py', 'vm_basis.py', 'weight1.py', - subdir : 'sage/modular/modform' + subdir: 'sage/modular/modform', ) extension_data = { 'eis_series_cython' : files('eis_series_cython.pyx'), - 'l_series_gross_zagier_coeffs' : files('l_series_gross_zagier_coeffs.pyx') + 'l_series_gross_zagier_coeffs' : files('l_series_gross_zagier_coeffs.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modular/modform', - install: true, - include_directories: [inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modular/modform', + install: true, + include_directories: [inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach diff --git a/src/sage/modular/modsym/meson.build b/src/sage/modular/modsym/meson.build index 82a2c9ef85d..570e4c762d8 100644 --- a/src/sage/modular/modsym/meson.build +++ b/src/sage/modular/modsym/meson.build @@ -14,7 +14,7 @@ py.install_sources( 'space.py', 'subspace.py', 'tests.py', - subdir : 'sage/modular/modsym' + subdir: 'sage/modular/modsym', ) extension_data = { @@ -22,16 +22,17 @@ extension_data = { 'heilbronn' : files('heilbronn.pyx'), 'manin_symbol' : files('manin_symbol.pyx'), 'p1list' : files('p1list.pyx'), - 'relation_matrix_pyx' : files('relation_matrix_pyx.pyx') + 'relation_matrix_pyx' : files('relation_matrix_pyx.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modular/modsym', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modular/modsym', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach diff --git a/src/sage/modular/pollack_stevens/meson.build b/src/sage/modular/pollack_stevens/meson.build index 24e6ec29a15..5eeff5063fe 100644 --- a/src/sage/modular/pollack_stevens/meson.build +++ b/src/sage/modular/pollack_stevens/meson.build @@ -7,20 +7,19 @@ py.install_sources( 'padic_lseries.py', 'sigma0.py', 'space.py', - subdir : 'sage/modular/pollack_stevens' + subdir: 'sage/modular/pollack_stevens', ) -extension_data = { - 'dist' : files('dist.pyx') -} +extension_data = {'dist' : files('dist.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modular/pollack_stevens', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modular/pollack_stevens', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 251887c7a21..43b874eba05 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -24,7 +24,7 @@ py.install_sources( 'vector_space_morphism.py', 'vector_symbolic_dense.py', 'vector_symbolic_sparse.py', - subdir : 'sage/modules' + subdir: 'sage/modules', ) extension_data = { @@ -41,32 +41,44 @@ extension_data = { 'vector_numpy_integer_dense' : files('vector_numpy_integer_dense.pyx'), 'vector_rational_dense' : files('vector_rational_dense.pyx'), 'vector_rational_sparse' : files('vector_rational_sparse.pyx'), - 'vector_real_double_dense' : files('vector_real_double_dense.pyx') + 'vector_real_double_dense' : files('vector_real_double_dense.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modules', - install: true, - include_directories: [inc_cpython, inc_ext, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modules', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_numpy, + inc_rings, + inc_rings_finite, + ], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], + ) endforeach -extension_data_cpp = { - 'vector_mod2_dense': files('vector_mod2_dense.pyx'), -} +extension_data_cpp = {'vector_mod2_dense': files('vector_mod2_dense.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/modules', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modules', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_numpy, + inc_rings, + inc_rings_finite, + ], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], + ) endforeach install_subdir('fg_pid', install_dir: sage_install_dir / 'modules') diff --git a/src/sage/modules/with_basis/meson.build b/src/sage/modules/with_basis/meson.build index 606344d9d93..d6f63bf1391 100644 --- a/src/sage/modules/with_basis/meson.build +++ b/src/sage/modules/with_basis/meson.build @@ -5,20 +5,19 @@ py.install_sources( 'morphism.py', 'representation.py', 'subquotient.py', - subdir : 'sage/modules/with_basis' + subdir: 'sage/modules/with_basis', ) -extension_data = { - 'indexed_element' : files('indexed_element.pyx') -} +extension_data = {'indexed_element' : files('indexed_element.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/modules/with_basis', - install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/modules/with_basis', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/monoids/meson.build b/src/sage/monoids/meson.build index cbd5de9d9e6..a76432470b0 100644 --- a/src/sage/monoids/meson.build +++ b/src/sage/monoids/meson.build @@ -11,20 +11,21 @@ py.install_sources( 'string_monoid_element.py', 'string_ops.py', 'trace_monoid.py', - subdir : 'sage/monoids' + subdir: 'sage/monoids', ) extension_data = { - 'free_abelian_monoid_element' : files('free_abelian_monoid_element.pyx') + 'free_abelian_monoid_element' : files('free_abelian_monoid_element.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/monoids', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/monoids', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index a82045d1787..be85a35d250 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -10,7 +10,7 @@ py.install_sources( 'logging_backend.py', 'ppl_backend_test.py', 'scip_backend_test.py', - subdir : 'sage/numerical/backends' + subdir: 'sage/numerical/backends', ) extension_data = { @@ -24,31 +24,31 @@ extension_data = { 'glpk_graph_backend' : files('glpk_graph_backend.pyx'), 'interactivelp_backend' : files('interactivelp_backend.pyx'), 'matrix_sdp_backend' : files('matrix_sdp_backend.pyx'), - 'ppl_backend' : files('ppl_backend.pyx') + 'ppl_backend' : files('ppl_backend.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/numerical/backends', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, glpk, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/numerical/backends', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, glpk, gmp], + ) endforeach -extension_data_cpp = { - 'scip_backend': files('scip_backend.pyx'), -} +extension_data_cpp = {'scip_backend': files('scip_backend.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/numerical/backends', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/numerical/backends', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/numerical/meson.build b/src/sage/numerical/meson.build index 65e2ea5560c..97111776a7b 100644 --- a/src/sage/numerical/meson.build +++ b/src/sage/numerical/meson.build @@ -6,7 +6,7 @@ py.install_sources( 'linear_tensor.py', 'linear_tensor_constraints.py', 'optimize.py', - subdir : 'sage/numerical' + subdir: 'sage/numerical', ) extension_data = { @@ -14,17 +14,18 @@ extension_data = { 'linear_functions' : files('linear_functions.pyx'), 'linear_tensor_element' : files('linear_tensor_element.pyx'), 'mip' : files('mip.pyx'), - 'sdp' : files('sdp.pyx') + 'sdp' : files('sdp.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/numerical', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cypari2, gmp, mpfr], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/numerical', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cypari2, gmp, mpfr], + ) endforeach subdir('backends') diff --git a/src/sage/plot/meson.build b/src/sage/plot/meson.build index a4a81656c56..96a337faf78 100644 --- a/src/sage/plot/meson.build +++ b/src/sage/plot/meson.build @@ -29,21 +29,20 @@ py.install_sources( 'step.py', 'streamline_plot.py', 'text.py', - subdir : 'sage/plot' + subdir: 'sage/plot', ) -extension_data = { - 'complex_plot' : files('complex_plot.pyx') -} +extension_data = {'complex_plot' : files('complex_plot.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/plot', - install: true, - include_directories: [inc_cpython, inc_gsl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp, gsl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/plot', + install: true, + include_directories: [inc_cpython, inc_gsl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp, gsl], + ) endforeach subdir('plot3d') diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 3a9f0b40db9..4b8b4e23fe3 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -12,7 +12,7 @@ py.install_sources( 'tachyon.py', 'texture.py', 'tri_plot.py', - subdir : 'sage/plot/plot3d' + subdir: 'sage/plot/plot3d', ) extension_data = { @@ -21,16 +21,17 @@ extension_data = { 'index_face_set' : files('index_face_set.pyx'), 'parametric_surface' : files('parametric_surface.pyx'), 'shapes' : files('shapes.pyx'), - 'transform' : files('transform.pyx') + 'transform' : files('transform.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/plot/plot3d', - install: true, - include_directories: [inc_cpython, inc_ext, inc_numpy], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/plot/plot3d', + install: true, + include_directories: [inc_cpython, inc_ext, inc_numpy], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/probability/meson.build b/src/sage/probability/meson.build index 55518a1f01d..83b6a7e091e 100644 --- a/src/sage/probability/meson.build +++ b/src/sage/probability/meson.build @@ -1,16 +1,17 @@ -py.install_sources('all.py', 'random_variable.py', subdir : 'sage/probability') +py.install_sources('all.py', 'random_variable.py', subdir: 'sage/probability') extension_data = { - 'probability_distribution' : files('probability_distribution.pyx') + 'probability_distribution' : files('probability_distribution.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/probability', - install: true, - include_directories: [], - dependencies: [py_dep, cysignals, gmp, gsl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/probability', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp, gsl], + ) endforeach diff --git a/src/sage/quadratic_forms/meson.build b/src/sage/quadratic_forms/meson.build index 6bea48efb61..0e352ed72be 100644 --- a/src/sage/quadratic_forms/meson.build +++ b/src/sage/quadratic_forms/meson.build @@ -28,23 +28,24 @@ py.install_sources( 'random_quadraticform.py', 'special_values.py', 'ternary_qf.py', - subdir : 'sage/quadratic_forms' + subdir: 'sage/quadratic_forms', ) extension_data = { 'count_local_2' : files('count_local_2.pyx'), 'quadratic_form__evaluate' : files('quadratic_form__evaluate.pyx'), - 'ternary' : files('ternary.pyx') + 'ternary' : files('ternary.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/quadratic_forms', - install: true, - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/quadratic_forms', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach install_subdir('genera', install_dir: sage_install_dir / 'quadratic_forms') diff --git a/src/sage/quivers/meson.build b/src/sage/quivers/meson.build index fafbc0adbb1..c3f3e03e3a9 100644 --- a/src/sage/quivers/meson.build +++ b/src/sage/quivers/meson.build @@ -6,21 +6,22 @@ py.install_sources( 'morphism.py', 'path_semigroup.py', 'representation.py', - subdir : 'sage/quivers' + subdir: 'sage/quivers', ) extension_data = { 'algebra_elements' : files('algebra_elements.pyx'), - 'paths' : files('paths.pyx') + 'paths' : files('paths.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/quivers', - install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/quivers', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/rings/convert/meson.build b/src/sage/rings/convert/meson.build index 876847e6d39..0b485247bf1 100644 --- a/src/sage/rings/convert/meson.build +++ b/src/sage/rings/convert/meson.build @@ -1,16 +1,15 @@ -py.install_sources('all.py', 'mpfi.pxd', subdir : 'sage/rings/convert') +py.install_sources('all.py', 'mpfi.pxd', subdir: 'sage/rings/convert') -extension_data = { - 'mpfi' : files('mpfi.pyx') -} +extension_data = {'mpfi' : files('mpfi.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/convert', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cypari2, gmp, gsl, mpfi, mpfr, pari], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/convert', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cypari2, gmp, gsl, mpfi, mpfr, pari], + ) endforeach diff --git a/src/sage/rings/finite_rings/meson.build b/src/sage/rings/finite_rings/meson.build index 5ebc78d97fa..896d69651cf 100644 --- a/src/sage/rings/finite_rings/meson.build +++ b/src/sage/rings/finite_rings/meson.build @@ -22,7 +22,7 @@ py.install_sources( 'maps_finite_field.py', 'residue_field.pxd', 'stdint.pxd', - subdir : 'sage/rings/finite_rings' + subdir: 'sage/rings/finite_rings', ) extension_data = { @@ -35,33 +35,47 @@ extension_data = { 'residue_field' : files('residue_field.pyx'), 'residue_field_givaro' : files('residue_field_givaro.pyx'), 'residue_field_ntl_gf2e' : files('residue_field_ntl_gf2e.pyx'), - 'residue_field_pari_ffelt' : files('residue_field_pari_ffelt.pyx') + 'residue_field_pari_ffelt' : files('residue_field_pari_ffelt.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/finite_rings', - install: true, - include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, givaro, gmp, m, ntl, pari], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/finite_rings', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_ntl, + inc_rings, + inc_rings_finite, + ], + dependencies: [py_dep, cypari2, cysignals, givaro, gmp, m, ntl, pari], + ) endforeach extension_data_cpp = { - 'element_givaro': files('element_givaro.pyx'), - 'element_ntl_gf2e': files('element_ntl_gf2e.pyx'), - 'hom_finite_field_givaro': files('hom_finite_field_givaro.pyx'), + 'element_givaro': files('element_givaro.pyx'), + 'element_ntl_gf2e': files('element_ntl_gf2e.pyx'), + 'hom_finite_field_givaro': files('hom_finite_field_givaro.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/finite_rings', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, givaro, gmp, m, ntl, pari], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/finite_rings', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_ntl, + inc_rings, + inc_rings_finite, + ], + dependencies: [py_dep, cypari2, cysignals, givaro, gmp, m, ntl, pari], + ) endforeach diff --git a/src/sage/rings/function_field/meson.build b/src/sage/rings/function_field/meson.build index a5aad66955b..16e5fa6fa6f 100644 --- a/src/sage/rings/function_field/meson.build +++ b/src/sage/rings/function_field/meson.build @@ -14,6 +14,9 @@ py.install_sources( 'ideal.py', 'ideal_polymod.py', 'ideal_rational.py', + 'jacobian_base.py', + 'jacobian_hess.py', + 'jacobian_khuri_makdisi.py', 'maps.py', 'order.py', 'order_basis.py', @@ -24,24 +27,29 @@ py.install_sources( 'place_rational.py', 'valuation.py', 'valuation_ring.py', - subdir : 'sage/rings/function_field' + subdir: 'sage/rings/function_field', ) extension_data = { 'element' : files('element.pyx'), 'element_polymod' : files('element_polymod.pyx'), 'element_rational' : files('element_rational.pyx'), - 'hermite_form_polynomial' : files('hermite_form_polynomial.pyx') + 'hermite_form_polynomial' : files('hermite_form_polynomial.pyx'), + 'khuri_makdisi' : files('khuri_makdisi.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/function_field', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/function_field', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) endforeach -install_subdir('drinfeld_modules', install_dir: sage_install_dir / 'rings/function_field') +install_subdir( + 'drinfeld_modules', + install_dir: sage_install_dir / 'rings/function_field', +) diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index 114007def84..b55ea89b83e 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -81,7 +81,7 @@ py.install_sources( 'tate_algebra_ideal.pxd', 'tests.py', 'universal_cyclotomic_field.py', - subdir : 'sage/rings' + subdir: 'sage/rings', ) extension_data = { @@ -121,36 +121,89 @@ extension_data = { 'ring_extension_morphism' : files('ring_extension_morphism.pyx'), 'sum_of_squares' : files('sum_of_squares.pyx'), 'tate_algebra_element' : files('tate_algebra_element.pyx'), - 'tate_algebra_ideal' : files('tate_algebra_ideal.pyx') + 'tate_algebra_ideal' : files('tate_algebra_ideal.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_gsl, + inc_ntl, + inc_rings, + inc_rings_finite, + ], + dependencies: [ + py_dep, + cypari2, + cysignals, + flint, + gmp, + gmpy2, + gsl, + m, + mpc, + mpfi, + mpfr, + ntl, + pari, + pthread, + ], + ) endforeach extension_data_cpp = { - 'bernmm': files('bernmm.pyx', 'bernmm/bern_modp.cpp', 'bernmm/bern_modp_util.cpp', 'bernmm/bern_rat.cpp'), - 'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), - 'fraction_field_FpT': files('fraction_field_FpT.pyx'), - 'rational': files('rational.pyx'), + 'bernmm': files( + 'bernmm.pyx', + 'bernmm/bern_modp.cpp', + 'bernmm/bern_modp_util.cpp', + 'bernmm/bern_rat.cpp', + ), + 'bernoulli_mod_p': files('bernoulli_mod_p.pyx'), + 'fraction_field_FpT': files('fraction_field_FpT.pyx'), + 'rational': files('rational.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings', - install: true, - cpp_args: ['-DUSE_THREADS=1','-DTHREAD_STACK_SIZE=4096'], - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_gsl, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, gmpy2, gsl, m, mpc, mpfi, mpfr, ntl, pari, pthread], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings', + install: true, + cpp_args: ['-DUSE_THREADS=1', '-DTHREAD_STACK_SIZE=4096'], + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_gsl, + inc_ntl, + inc_rings, + inc_rings_finite, + ], + dependencies: [ + py_dep, + cypari2, + cysignals, + flint, + gmp, + gmpy2, + gsl, + m, + mpc, + mpfi, + mpfr, + ntl, + pari, + pthread, + ], + ) endforeach install_subdir('asymptotic', install_dir: sage_install_dir / 'rings') diff --git a/src/sage/rings/number_field/meson.build b/src/sage/rings/number_field/meson.build index f233e51632c..077c1d918e6 100644 --- a/src/sage/rings/number_field/meson.build +++ b/src/sage/rings/number_field/meson.build @@ -25,7 +25,7 @@ py.install_sources( 'totallyreal_phc.py', 'totallyreal_rel.py', 'unit_group.py', - subdir : 'sage/rings/number_field' + subdir: 'sage/rings/number_field', ) extension_data = { @@ -33,32 +33,34 @@ extension_data = { 'number_field_element_base' : files('number_field_element_base.pyx'), 'number_field_morphisms' : files('number_field_morphisms.pyx'), 'totallyreal' : files('totallyreal.pyx'), - 'totallyreal_data' : files('totallyreal_data.pyx') + 'totallyreal_data' : files('totallyreal_data.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/number_field', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/number_field', + install: true, + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], + ) endforeach extension_data_cpp = { - 'number_field_element': files('number_field_element.pyx'), - 'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), + 'number_field_element': files('number_field_element.pyx'), + 'number_field_element_quadratic': files('number_field_element_quadratic.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/number_field', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/number_field', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfi, mpfr, ntl], + ) endforeach diff --git a/src/sage/rings/padics/meson.build b/src/sage/rings/padics/meson.build index 39bc05164a2..9cb64492095 100644 --- a/src/sage/rings/padics/meson.build +++ b/src/sage/rings/padics/meson.build @@ -46,7 +46,7 @@ py.install_sources( 'tests.py', 'tutorial.py', 'unramified_extension_generic.py', - subdir : 'sage/rings/padics' + subdir: 'sage/rings/padics', ) extension_data = { @@ -67,40 +67,57 @@ extension_data = { 'relative_ramified_CA' : files('relative_ramified_CA.pyx'), 'relative_ramified_CR' : files('relative_ramified_CR.pyx'), 'relative_ramified_FM' : files('relative_ramified_FM.pyx'), - 'relative_ramified_FP' : files('relative_ramified_FP.pyx') + 'relative_ramified_FP' : files('relative_ramified_FP.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/padics', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings, inc_rings_finite, inc_src], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, m, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/padics', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_ntl, + inc_rings, + inc_rings_finite, + inc_src, + ], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, m, ntl], + ) endforeach extension_data_cpp = { - 'padic_ZZ_pX_CA_element': files('padic_ZZ_pX_CA_element.pyx'), - 'padic_ZZ_pX_CR_element': files('padic_ZZ_pX_CR_element.pyx'), - 'padic_ZZ_pX_FM_element': files('padic_ZZ_pX_FM_element.pyx'), - 'padic_ZZ_pX_element': files('padic_ZZ_pX_element.pyx'), - 'padic_ext_element': files('padic_ext_element.pyx'), - 'padic_printing': files('padic_printing.pyx'), - 'pow_computer': files('pow_computer.pyx'), - 'pow_computer_ext': files('pow_computer_ext.pyx'), - 'pow_computer_flint': files('pow_computer_flint.pyx'), - 'pow_computer_relative': files('pow_computer_relative.pyx'), + 'padic_ZZ_pX_CA_element': files('padic_ZZ_pX_CA_element.pyx'), + 'padic_ZZ_pX_CR_element': files('padic_ZZ_pX_CR_element.pyx'), + 'padic_ZZ_pX_FM_element': files('padic_ZZ_pX_FM_element.pyx'), + 'padic_ZZ_pX_element': files('padic_ZZ_pX_element.pyx'), + 'padic_ext_element': files('padic_ext_element.pyx'), + 'padic_printing': files('padic_printing.pyx'), + 'pow_computer': files('pow_computer.pyx'), + 'pow_computer_ext': files('pow_computer_ext.pyx'), + 'pow_computer_flint': files('pow_computer_flint.pyx'), + 'pow_computer_relative': files('pow_computer_relative.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/padics', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, m, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/padics', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_ntl, + inc_rings, + inc_rings_finite, + ], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, m, ntl], + ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index 381a76642d9..c1625c5eb94 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -63,7 +63,7 @@ py.install_sources( 'toy_buchberger.py', 'toy_d_basis.py', 'toy_variety.py', - subdir : 'sage/rings/polynomial' + subdir: 'sage/rings/polynomial', ) extension_data = { @@ -88,42 +88,85 @@ extension_data = { 'skew_polynomial_element' : files('skew_polynomial_element.pyx'), 'skew_polynomial_finite_field' : files('skew_polynomial_finite_field.pyx'), 'skew_polynomial_finite_order' : files('skew_polynomial_finite_order.pyx'), - 'symmetric_reduction' : files('symmetric_reduction.pyx') + 'symmetric_reduction' : files('symmetric_reduction.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/polynomial', - install: true, - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/polynomial', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_ntl, + inc_numpy, + inc_rings, + inc_rings_finite, + ], + dependencies: [ + py_dep, + cypari2, + cysignals, + flint, + givaro, + gmp, + mpfi, + mpfr, + ntl, + pari, + ], + ) endforeach extension_data_cpp = { - 'evaluation_ntl': files('evaluation_ntl.pyx'), - 'multi_polynomial_ideal_libsingular': files('multi_polynomial_ideal_libsingular.pyx'), - 'multi_polynomial_libsingular': files('multi_polynomial_libsingular.pyx'), - 'plural': files('plural.pyx'), - 'polynomial_gf2x': files('polynomial_gf2x.pyx'), - 'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), - 'polynomial_integer_dense_ntl': files('polynomial_integer_dense_ntl.pyx'), - 'polynomial_modn_dense_ntl': files('polynomial_modn_dense_ntl.pyx'), - 'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), - 'polynomial_zmod_flint': files('polynomial_zmod_flint.pyx'), - 'polynomial_zz_pex': files('polynomial_zz_pex.pyx'), + 'evaluation_ntl': files('evaluation_ntl.pyx'), + 'multi_polynomial_ideal_libsingular': files( + 'multi_polynomial_ideal_libsingular.pyx', + ), + 'multi_polynomial_libsingular': files('multi_polynomial_libsingular.pyx'), + 'plural': files('plural.pyx'), + 'polynomial_gf2x': files('polynomial_gf2x.pyx'), + 'polynomial_integer_dense_flint': files('polynomial_integer_dense_flint.pyx'), + 'polynomial_integer_dense_ntl': files('polynomial_integer_dense_ntl.pyx'), + 'polynomial_modn_dense_ntl': files('polynomial_modn_dense_ntl.pyx'), + 'polynomial_rational_flint': files('polynomial_rational_flint.pyx'), + 'polynomial_zmod_flint': files('polynomial_zmod_flint.pyx'), + 'polynomial_zz_pex': files('polynomial_zz_pex.pyx'), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/polynomial', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_flint, inc_ntl, inc_numpy, inc_rings, inc_rings_finite], - dependencies: [py_dep, cypari2, cysignals, flint, givaro, gmp, mpfi, mpfr, ntl, pari, singular], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/polynomial', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_flint, + inc_ntl, + inc_numpy, + inc_rings, + inc_rings_finite, + ], + dependencies: [ + py_dep, + cypari2, + cysignals, + flint, + givaro, + gmp, + mpfi, + mpfr, + ntl, + pari, + singular, + ], + ) endforeach install_subdir('padics', install_dir: sage_install_dir / 'rings/polynomial') diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index ce2d3d82af4..f0fa45e837b 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -23,21 +23,20 @@ py.install_sources( 'rank.py', 'specialsets.py', 'statistics.py', - subdir : 'sage/rings/polynomial/pbori' + subdir: 'sage/rings/polynomial/pbori', ) -extension_data_cpp = { - 'pbori': files('pbori.pyx'), -} +extension_data_cpp = {'pbori': files('pbori.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/polynomial/pbori', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], - dependencies: [py_dep, brial, brial_groebner, cysignals, gmp, m4ri, png], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/polynomial/pbori', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], + dependencies: [py_dep, brial, brial_groebner, cysignals, gmp, m4ri, png], + ) endforeach diff --git a/src/sage/rings/polynomial/weil/meson.build b/src/sage/rings/polynomial/weil/meson.build index d4b02bd2bd2..2c9bd006919 100644 --- a/src/sage/rings/polynomial/weil/meson.build +++ b/src/sage/rings/polynomial/weil/meson.build @@ -1,16 +1,19 @@ -py.install_sources('all.py', 'power_sums.h', subdir : 'sage/rings/polynomial/weil') +py.install_sources( + 'all.py', + 'power_sums.h', + subdir: 'sage/rings/polynomial/weil', +) -extension_data = { - 'weil_polynomials' : files('weil_polynomials.pyx') -} +extension_data = {'weil_polynomials' : files('weil_polynomials.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/polynomial/weil', - install: true, - include_directories: [inc_cpython, inc_flint, inc_rings, inc_src], - dependencies: [py_dep, cysignals, flint, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/polynomial/weil', + install: true, + include_directories: [inc_cpython, inc_flint, inc_rings, inc_src], + dependencies: [py_dep, cysignals, flint, gmp], + ) endforeach diff --git a/src/sage/rings/semirings/meson.build b/src/sage/rings/semirings/meson.build index 3a6b80b0301..e1e4e627ba3 100644 --- a/src/sage/rings/semirings/meson.build +++ b/src/sage/rings/semirings/meson.build @@ -1,16 +1,22 @@ -py.install_sources('all.py', 'non_negative_integer_semiring.py', subdir : 'sage/rings/semirings') +py.install_sources( + 'all.py', + 'non_negative_integer_semiring.py', + 'tropical_mpolynomial.py', + 'tropical_polynomial.py', + 'tropical_variety.py', + subdir: 'sage/rings/semirings', +) -extension_data = { - 'tropical_semiring' : files('tropical_semiring.pyx') -} +extension_data = {'tropical_semiring' : files('tropical_semiring.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/rings/semirings', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/rings/semirings', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/sat/meson.build b/src/sage/sat/meson.build index 4452288133f..a1a0246dfce 100644 --- a/src/sage/sat/meson.build +++ b/src/sage/sat/meson.build @@ -1,4 +1,4 @@ -py.install_sources('all.py', 'boolean_polynomials.py', subdir : 'sage/sat') +py.install_sources('all.py', 'boolean_polynomials.py', subdir: 'sage/sat') install_subdir('converters', install_dir: sage_install_dir / 'sat') subdir('solvers') diff --git a/src/sage/sat/solvers/meson.build b/src/sage/sat/solvers/meson.build index 4aa2927309b..0bf66f7fcb6 100644 --- a/src/sage/sat/solvers/meson.build +++ b/src/sage/sat/solvers/meson.build @@ -4,20 +4,19 @@ py.install_sources( 'dimacs.py', 'picosat.py', 'sat_lp.py', - subdir : 'sage/sat/solvers' + subdir: 'sage/sat/solvers', ) -extension_data = { - 'satsolver' : files('satsolver.pyx') -} +extension_data = {'satsolver' : files('satsolver.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/sat/solvers', - install: true, - include_directories: [], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/sat/solvers', + install: true, + include_directories: [], + dependencies: [py_dep, gmp], + ) endforeach diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index e74dd3cdd0b..3448c5d1c0a 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -49,22 +49,23 @@ py.install_sources( 'sha_tate.py', 'weierstrass_morphism.py', 'weierstrass_transform.py', - subdir : 'sage/schemes/elliptic_curves' + subdir: 'sage/schemes/elliptic_curves', ) extension_data = { 'descent_two_isogeny' : files('descent_two_isogeny.pyx'), 'mod_sym_num' : files('mod_sym_num.pyx'), - 'period_lattice_region' : files('period_lattice_region.pyx') + 'period_lattice_region' : files('period_lattice_region.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/schemes/elliptic_curves', - install: true, - include_directories: [inc_cpython, inc_flint, inc_numpy, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, pari], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/schemes/elliptic_curves', + install: true, + include_directories: [inc_cpython, inc_flint, inc_numpy, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, pari], + ) endforeach diff --git a/src/sage/schemes/hyperelliptic_curves/meson.build b/src/sage/schemes/hyperelliptic_curves/meson.build index 4e8d22b388b..e4b017d4192 100644 --- a/src/sage/schemes/hyperelliptic_curves/meson.build +++ b/src/sage/schemes/hyperelliptic_curves/meson.build @@ -16,21 +16,33 @@ py.install_sources( 'kummer_surface.py', 'mestre.py', 'monsky_washnitzer.py', - subdir : 'sage/schemes/hyperelliptic_curves' + subdir: 'sage/schemes/hyperelliptic_curves', ) extension_data_cpp = { - 'hypellfrob': files('hypellfrob.pyx', 'hypellfrob/hypellfrob.cpp', 'hypellfrob/recurrences_ntl.cpp'), + 'hypellfrob': files( + 'hypellfrob.pyx', + 'hypellfrob/hypellfrob.cpp', + 'hypellfrob/recurrences_ntl.cpp', + ), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/schemes/hyperelliptic_curves', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_ntl, inc_rings, inc_rings_finite, inc_hypellfrob], - dependencies: [py_dep, cysignals, gmp, ntl], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/schemes/hyperelliptic_curves', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [ + inc_cpython, + inc_ext, + inc_ntl, + inc_rings, + inc_rings_finite, + inc_hypellfrob, + ], + dependencies: [py_dep, cysignals, gmp, ntl], + ) endforeach diff --git a/src/sage/schemes/meson.build b/src/sage/schemes/meson.build index 32825f600ed..c74c532b930 100644 --- a/src/sage/schemes/meson.build +++ b/src/sage/schemes/meson.build @@ -1,4 +1,4 @@ -py.install_sources('all.py', 'overview.py', subdir : 'sage/schemes') +py.install_sources('all.py', 'overview.py', subdir: 'sage/schemes') install_subdir('affine', install_dir: sage_install_dir / 'schemes') install_subdir('berkovich', install_dir: sage_install_dir / 'schemes') diff --git a/src/sage/schemes/toric/meson.build b/src/sage/schemes/toric/meson.build index f50c08f35fd..d9dea45fcc8 100644 --- a/src/sage/schemes/toric/meson.build +++ b/src/sage/schemes/toric/meson.build @@ -13,21 +13,20 @@ py.install_sources( 'weierstrass.py', 'weierstrass_covering.py', 'weierstrass_higher.py', - subdir : 'sage/schemes/toric' + subdir: 'sage/schemes/toric', ) -extension_data = { - 'divisor_class' : files('divisor_class.pyx') -} +extension_data = {'divisor_class' : files('divisor_class.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/schemes/toric', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/schemes/toric', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, gmp], + ) endforeach install_subdir('sheaf', install_dir: sage_install_dir / 'schemes/toric') diff --git a/src/sage/sets/meson.build b/src/sage/sets/meson.build index 8e05c9ac553..73faddaf9c7 100644 --- a/src/sage/sets/meson.build +++ b/src/sage/sets/meson.build @@ -20,7 +20,7 @@ py.install_sources( 'set.py', 'set_from_iterator.py', 'totally_ordered_finite_set.py', - subdir : 'sage/sets' + subdir: 'sage/sets', ) extension_data = { @@ -28,16 +28,17 @@ extension_data = { 'family' : files('family.pyx'), 'finite_set_map_cy' : files('finite_set_map_cy.pyx'), 'pythonclass' : files('pythonclass.pyx'), - 'recursively_enumerated_set' : files('recursively_enumerated_set.pyx') + 'recursively_enumerated_set' : files('recursively_enumerated_set.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/sets', - install: true, - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/sets', + install: true, + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index 6b637f668e4..9297d33a139 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -1,16 +1,28 @@ -py.install_sources('all.py', 'discrete_gaussian_lattice.py', 'discrete_gaussian_polynomial.py', subdir : 'sage/stats/distributions') +py.install_sources( + 'all.py', + 'catalog.py', + 'discrete_gaussian_lattice.py', + 'discrete_gaussian_polynomial.py', + subdir: 'sage/stats/distributions', +) extension_data = { - 'discrete_gaussian_integer' : files('discrete_gaussian_integer.pyx', 'dgs_gauss_mp.c', 'dgs_gauss_dp.c', 'dgs_bern.c') + 'discrete_gaussian_integer' : files( + 'dgs_bern.c', + 'dgs_gauss_dp.c', + 'dgs_gauss_mp.c', + 'discrete_gaussian_integer.pyx', + ), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/stats/distributions', - install: true, - include_directories: [inc_cpython, inc_rings, inc_src], - dependencies: [py_dep, cypari2, cysignals, gmp, mpfr], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/stats/distributions', + install: true, + include_directories: [inc_cpython, inc_rings, inc_src], + dependencies: [py_dep, cypari2, cysignals, gmp, mpfr], + ) endforeach diff --git a/src/sage/stats/hmm/meson.build b/src/sage/stats/hmm/meson.build index e6a60f57224..def2fe0cc96 100644 --- a/src/sage/stats/hmm/meson.build +++ b/src/sage/stats/hmm/meson.build @@ -1,19 +1,20 @@ -py.install_sources('all.py', subdir : 'sage/stats/hmm') +py.install_sources('all.py', subdir: 'sage/stats/hmm') extension_data = { 'chmm' : files('chmm.pyx'), 'distributions' : files('distributions.pyx'), 'hmm' : files('hmm.pyx'), - 'util' : files('util.pyx') + 'util' : files('util.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/stats/hmm', - install: true, - include_directories: [], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/stats/hmm', + install: true, + include_directories: [], + dependencies: [py_dep, cysignals, gmp], + ) endforeach diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build index a0d8b8c3395..36cafd71142 100644 --- a/src/sage/stats/meson.build +++ b/src/sage/stats/meson.build @@ -1,18 +1,19 @@ -py.install_sources('all.py', 'basic_stats.py', 'r.py', subdir : 'sage/stats') +py.install_sources('all.py', 'basic_stats.py', 'r.py', subdir: 'sage/stats') extension_data = { 'intlist' : files('intlist.pyx'), - 'time_series' : files('time_series.pyx') + 'time_series' : files('time_series.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/stats', - install: true, - include_directories: [inc_cpython, inc_numpy], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/stats', + install: true, + include_directories: [inc_cpython, inc_numpy], + dependencies: [py_dep, cysignals, gmp], + ) endforeach subdir('distributions') diff --git a/src/sage/structure/meson.build b/src/sage/structure/meson.build index f0eda1b2b59..6f4c75d58a4 100644 --- a/src/sage/structure/meson.build +++ b/src/sage/structure/meson.build @@ -34,7 +34,7 @@ py.install_sources( 'support_view.py', 'test_factory.py', 'unique_representation.py', - subdir : 'sage/structure' + subdir: 'sage/structure', ) extension_data = { @@ -56,17 +56,18 @@ extension_data = { 'parent_gens' : files('parent_gens.pyx'), 'parent_old' : files('parent_old.pyx'), 'richcmp' : files('richcmp.pyx'), - 'sage_object' : files('sage_object.pyx') + 'sage_object' : files('sage_object.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/structure', - install: true, - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, gmp, gmpy2, mpc, mpfr], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/structure', + install: true, + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, gmp, gmpy2, mpc, mpfr], + ) endforeach install_subdir('proof', install_dir: sage_install_dir / 'structure') diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index a7216e0a57c..fdfc918680d 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -26,90 +26,128 @@ py.install_sources( 'symengine.py', 'tests.py', 'units.py', - subdir : 'sage/symbolic' + subdir: 'sage/symbolic', ) extension_data = { 'function' : files('function.pyx'), - 'ring' : files('ring.pyx') + 'ring' : files('ring.pyx'), } foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/symbolic', - install: true, - include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, gsl, mpfr, pari, singular], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/symbolic', + install: true, + include_directories: [ + inc_cpython, + inc_ext, + inc_ginac, + inc_gsl, + inc_pynac, + inc_rings, + ], + dependencies: [ + py_dep, + cypari2, + cysignals, + flint, + gmp, + gsl, + mpfr, + pari, + singular, + ], + ) endforeach extension_data_cpp = { - 'expression': files('expression.pyx', - 'ginac/add.cpp', - 'ginac/archive.cpp', - 'ginac/assume.cpp', - 'ginac/basic.cpp', - 'ginac/cmatcher.cpp', - 'ginac/constant.cpp', - 'ginac/context.cpp', - 'ginac/ex.cpp', - 'ginac/expair.cpp', - 'ginac/expairseq.cpp', - 'ginac/exprseq.cpp', - 'ginac/fderivative.cpp', - 'ginac/function.cpp', - 'ginac/function_info.cpp', - 'ginac/infinity.cpp', - 'ginac/infoflagbase.cpp', - 'ginac/inifcns.cpp', - 'ginac/inifcns_comb.cpp', - 'ginac/inifcns_gamma.cpp', - 'ginac/inifcns_hyperb.cpp', - 'ginac/inifcns_hyperg.cpp', - 'ginac/inifcns_nstdsums.cpp', - 'ginac/inifcns_orthopoly.cpp', - 'ginac/inifcns_trans.cpp', - 'ginac/inifcns_trig.cpp', - 'ginac/inifcns_zeta.cpp', - 'ginac/lst.cpp', - 'ginac/matrix.cpp', - 'ginac/mpoly-giac.cpp', - 'ginac/mpoly-ginac.cpp', - 'ginac/mpoly-singular.cpp', - 'ginac/mpoly.cpp', - 'ginac/mul.cpp', - 'ginac/normal.cpp', - 'ginac/numeric.cpp', - 'ginac/operators.cpp', - 'ginac/order.cpp', - 'ginac/power.cpp', - 'ginac/print.cpp', - 'ginac/pseries.cpp', - 'ginac/py_funcs.cpp', - 'ginac/registrar.cpp', - 'ginac/relational.cpp', - 'ginac/remember.cpp', - 'ginac/sum.cpp', - 'ginac/symbol.cpp', - 'ginac/templates.cpp', - 'ginac/upoly-ginac.cpp', - 'ginac/useries.cpp', - 'ginac/utils.cpp', - 'ginac/wildcard.cpp', - ), + 'expression': files( + 'expression.pyx', + 'ginac/add.cpp', + 'ginac/archive.cpp', + 'ginac/assume.cpp', + 'ginac/basic.cpp', + 'ginac/cmatcher.cpp', + 'ginac/constant.cpp', + 'ginac/context.cpp', + 'ginac/ex.cpp', + 'ginac/expair.cpp', + 'ginac/expairseq.cpp', + 'ginac/exprseq.cpp', + 'ginac/fderivative.cpp', + 'ginac/function.cpp', + 'ginac/function_info.cpp', + 'ginac/infinity.cpp', + 'ginac/infoflagbase.cpp', + 'ginac/inifcns.cpp', + 'ginac/inifcns_comb.cpp', + 'ginac/inifcns_gamma.cpp', + 'ginac/inifcns_hyperb.cpp', + 'ginac/inifcns_hyperg.cpp', + 'ginac/inifcns_nstdsums.cpp', + 'ginac/inifcns_orthopoly.cpp', + 'ginac/inifcns_trans.cpp', + 'ginac/inifcns_trig.cpp', + 'ginac/inifcns_zeta.cpp', + 'ginac/lst.cpp', + 'ginac/matrix.cpp', + 'ginac/mpoly-ginac.cpp', + 'ginac/mpoly-singular.cpp', + 'ginac/mpoly.cpp', + 'ginac/mul.cpp', + 'ginac/normal.cpp', + 'ginac/numeric.cpp', + 'ginac/operators.cpp', + 'ginac/order.cpp', + 'ginac/power.cpp', + 'ginac/print.cpp', + 'ginac/pseries.cpp', + 'ginac/py_funcs.cpp', + 'ginac/registrar.cpp', + 'ginac/relational.cpp', + 'ginac/remember.cpp', + 'ginac/sum.cpp', + 'ginac/symbol.cpp', + 'ginac/templates.cpp', + 'ginac/upoly-ginac.cpp', + 'ginac/useries.cpp', + 'ginac/utils.cpp', + 'ginac/wildcard.cpp', + ), } foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/symbolic', - install: true, - override_options : ['cython_language=cpp'], - cpp_args : '-std=c++11', - include_directories: [inc_cpython, inc_ext, inc_ginac, inc_gsl, inc_pynac, inc_rings, include_directories('../libs/gmp')], - dependencies: [py_dep, cypari2, cysignals, gmp, flint, gsl, m, mpfr, pari, singular], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/symbolic', + install: true, + override_options: ['cython_language=cpp'], + cpp_args: '-std=c++11', + include_directories: [ + inc_cpython, + inc_ext, + inc_ginac, + inc_gsl, + inc_pynac, + inc_rings, + include_directories('../libs/gmp'), + ], + dependencies: [ + py_dep, + cypari2, + cysignals, + gmp, + flint, + gsl, + m, + mpfr, + pari, + singular, + ], + ) endforeach install_subdir('integration', install_dir: sage_install_dir / 'symbolic') diff --git a/src/sage/tests/meson.build b/src/sage/tests/meson.build index 9f51f6b4713..4592d9d9d4e 100644 --- a/src/sage/tests/meson.build +++ b/src/sage/tests/meson.build @@ -20,36 +20,34 @@ py.install_sources( 'symbolic-series.py', 'sympy.py', 'test_deprecation.py', - subdir : 'sage/tests' + subdir: 'sage/tests', ) -extension_data = { - 'cython' : files('cython.pyx') -} +extension_data = {'cython' : files('cython.pyx')} foreach name, pyx : extension_data - py.extension_module(name, - sources: pyx, - subdir: 'sage/tests', - install: true, - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/tests', + install: true, + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach -extension_data_cpp = { - 'stl_vector': files('stl_vector.pyx'), -} +extension_data_cpp = {'stl_vector': files('stl_vector.pyx')} foreach name, pyx : extension_data_cpp - py.extension_module(name, - sources: pyx, - subdir: 'sage/tests', - install: true, - override_options : ['cython_language=cpp'], - include_directories: [inc_cpython, inc_rings], - dependencies: [py_dep, cysignals, gmp], - ) + py.extension_module( + name, + sources: pyx, + subdir: 'sage/tests', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_rings], + dependencies: [py_dep, cysignals, gmp], + ) endforeach install_subdir('books', install_dir: sage_install_dir / 'tests') diff --git a/tools/README.md b/tools/README.md new file mode 100644 index 00000000000..b0c2e4bb68b --- /dev/null +++ b/tools/README.md @@ -0,0 +1,13 @@ +# Tools Directory + +This folder contains various command-line tools that are used to facilitate different development tasks. Below is a brief description of each command available in this directory. + +## Update Meson Build Files + +This command is used to updates the Meson build files in the project. It automatically adds new source files (py, pyx) to the Meson files and removes deleted source files. This command is useful when adding or removing source files from the project. + +Within an active virtual environment where Meson is installed, run the following command: + +```bash +tools/update_meson.py +``` diff --git a/tools/update-meson.py b/tools/update-meson.py old mode 100644 new mode 100755 index 49578007804..b85e35bfedc --- a/tools/update-meson.py +++ b/tools/update-meson.py @@ -1,13 +1,28 @@ +#!/usr/bin/env python3 + import argparse +import os +from argparse import Namespace from pathlib import Path -from mesonbuild.ast import AstVisitor +from mesonbuild import mlog +from mesonbuild.ast import ( + AstPrinter, + AstVisitor, +) from mesonbuild.ast.interpreter import MethodNode -from mesonbuild.mparser import AssignmentNode, BaseNode, DictNode, SymbolNode +from mesonbuild.mformat import ( + run as meson_format, +) +from mesonbuild.mparser import ( + AssignmentNode, + BaseNode, + DictNode, + SymbolNode, +) from mesonbuild.rewriter import ( ArgumentNode, ArrayNode, - BaseStringNode, FunctionNode, Rewriter, StringNode, @@ -16,7 +31,9 @@ # Get target directory from command line arguments parser = argparse.ArgumentParser() -parser.add_argument("sourcedir", help="Source directory") +parser.add_argument( + "sourcedir", help="Source directory", nargs="?", default=".", type=Path +) options = parser.parse_args() @@ -48,16 +65,17 @@ def arg_list_from_node(n): args = n.arguments return args + def _symbol(val: str) -> SymbolNode: - return SymbolNode(Token('', '', 0, 0, 0, (0, 0), val)) + return SymbolNode(Token("", "", 0, 0, 0, (0, 0), val)) -def add_python_sources(self: Rewriter, visitor: AstPython): +def update_python_sources(self: Rewriter, visitor: AstPython): for target in visitor.install_sources_calls: # Generate the current source list src_list: list[str] = [] for arg in arg_list_from_node(target): - if isinstance(arg, BaseStringNode): + if isinstance(arg, StringNode): src_list += [arg.value] folder = Path(target.filename).parent @@ -76,9 +94,24 @@ def add_python_sources(self: Rewriter, visitor: AstPython): token = Token("string", target.filename, 0, 0, 0, None, file_name) to_append += [StringNode(token)] - # Append to the AST at the right place + # Get all deleted files + to_remove = [] + for src in src_list: + if not folder.joinpath(src).exists(): + to_remove += [src] + + if not to_append and not to_remove: + continue + + # Update the source list target.args.arguments = sorted( - target.args.arguments + to_append, key=lambda x: x.value + [ + arg + for arg in target.args.arguments + if not (isinstance(arg, StringNode) and arg.value in to_remove) + ] + + to_append, + key=lambda x: x.value, ) # Mark the node as modified @@ -93,7 +126,7 @@ def add_python_sources(self: Rewriter, visitor: AstPython): if isinstance(target.value, DictNode): src_list.update({k.value: v for k, v in target.value.args.kwargs.items()}) ext_data.setdefault(folder, []) - ext_data[folder] += src_list.keys() + ext_data[folder] += src_list.keys() for target in visitor.extension_data: if target.var_name.value != "extension_data": @@ -102,6 +135,7 @@ def add_python_sources(self: Rewriter, visitor: AstPython): src_list = ext_data[folder] cython_files = sorted(list(folder.glob("*.pyx"))) + # Add all cython files that are not in the source list for file in cython_files: file_name = file.stem if file_name in src_list: @@ -109,7 +143,9 @@ def add_python_sources(self: Rewriter, visitor: AstPython): token = Token("string", target.filename, 0, 0, 0, None, file_name) arg = ArgumentNode(Token("", target.filename, 0, 0, 0, None, "[]")) arg.append( - StringNode(Token("string", target.filename, 0, 0, 0, None, file.name)) + StringNode( + Token("string", target.filename, 0, 0, 0, None, file.name) + ) ) func = FunctionNode(_symbol("files"), _symbol("("), arg, _symbol(")")) target.value.args.kwargs.update({StringNode(token): func}) @@ -117,11 +153,140 @@ def add_python_sources(self: Rewriter, visitor: AstPython): self.modified_nodes += [target] -Rewriter.process_add_python_sources = add_python_sources +def apply_changes(self: Rewriter): + assert all( + hasattr(x, "lineno") and hasattr(x, "colno") and hasattr(x, "filename") + for x in self.modified_nodes + ) + assert all( + hasattr(x, "lineno") and hasattr(x, "colno") and hasattr(x, "filename") + for x in self.to_remove_nodes + ) + assert all( + isinstance(x, (ArrayNode, FunctionNode, MethodNode, AssignmentNode)) + for x in self.modified_nodes + ) + assert all( + isinstance(x, (ArrayNode, AssignmentNode, FunctionNode)) + for x in self.to_remove_nodes + ) + # Sort based on line and column in reversed order + work_nodes = [{"node": x, "action": "modify"} for x in self.modified_nodes] + work_nodes += [{"node": x, "action": "rm"} for x in self.to_remove_nodes] + work_nodes = sorted( + work_nodes, key=lambda x: (x["node"].lineno, x["node"].colno), reverse=True + ) + work_nodes += [{"node": x, "action": "add"} for x in self.to_add_nodes] + + # Generating the new replacement string + str_list = [] + for i in work_nodes: + new_data = "" + if i["action"] == "modify" or i["action"] == "add": + printer = AstPrinter() + i["node"].accept(printer) + printer.post_process() + new_data = printer.result.strip() + data = { + "file": i["node"].filename, + "str": new_data, + "node": i["node"], + "action": i["action"], + } + str_list += [data] + + # Load build files + files = {} + for i in str_list: + if i["file"] in files: + continue + fpath = os.path.realpath(os.path.join(self.sourcedir, i["file"])) + fdata = "" + # Create an empty file if it does not exist + if not os.path.exists(fpath): + with open(fpath, "w", encoding="utf-8"): + pass + with open(fpath, encoding="utf-8") as fp: + fdata = fp.read() + + # Generate line offsets numbers + m_lines = fdata.splitlines(True) + offset = 0 + line_offsets = [] + for j in m_lines: + line_offsets += [offset] + offset += len(j) + + files[i["file"]] = {"path": fpath, "raw": fdata, "offsets": line_offsets} + + # Replace in source code + def remove_node(i): + offsets = files[i["file"]]["offsets"] + raw = files[i["file"]]["raw"] + node = i["node"] + line = node.lineno - 1 + col = node.colno + if isinstance(node, MethodNode): + # The new data contains the source object as well + col = node.source_object.colno + elif isinstance(node, AssignmentNode): + col = node.var_name.colno + start = offsets[line] + col + end = start + if isinstance(node, (ArrayNode, FunctionNode, MethodNode)): + end = offsets[node.end_lineno - 1] + node.end_colno + elif isinstance(node, AssignmentNode): + end = offsets[node.value.end_lineno - 1] + node.value.end_colno + + # Only removal is supported for assignments + elif isinstance(node, AssignmentNode) and i["action"] == "rm": + if isinstance(node.value, (ArrayNode, FunctionNode, MethodNode)): + remove_node( + {"file": i["file"], "str": "", "node": node.value, "action": "rm"} + ) + raw = files[i["file"]]["raw"] + while raw[end] != "=": + end += 1 + end += 1 # Handle the '=' + while raw[end] in {" ", "\n", "\t"}: + end += 1 + + files[i["file"]]["raw"] = raw[:start] + i["str"] + raw[end:] + + for i in str_list: + if i["action"] in {"modify", "rm"}: + remove_node(i) + elif i["action"] == "add": + files[i["file"]]["raw"] += i["str"] + "\n" + + # Write the files back + for key, val in files.items(): + mlog.log("Rewriting", mlog.yellow(key)) + with open(val["path"], "w", encoding="utf-8") as fp: + fp.write(val["raw"]) + + +# Monkey patch the apply_changes method until https://github.com/mesonbuild/meson/pull/12899 is merged +Rewriter.apply_changes = apply_changes +# Monkey patch the update_python_sources method until this is upstreamed +Rewriter.process_update_python_sources = update_python_sources + rewriter = Rewriter(options.sourcedir) visitor = AstPython() rewriter.interpreter.visitors += [visitor] rewriter.analyze_meson() -rewriter.process_add_python_sources(visitor) +rewriter.process_update_python_sources(visitor) rewriter.apply_changes() rewriter.print_info() + +# Run meson format +meson_format( + Namespace( + sources=[options.sourcedir], + inplace=True, + recursive=True, + output=None, + configuration=None, + editor_config=None, + ) +) From cdc5efb2b32168ae5b942047da4306fd8ba0ca0b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 16:03:43 +0000 Subject: [PATCH 163/229] Autogenerate init files --- .gitignore | 164 +++++++++++++++- meson.build | 178 ++++++++++++++++++ src/sage/__init__.py | 2 - src/sage/algebras/__init__.py | 1 - .../finite_dimensional_algebras/__init__.py | 1 - src/sage/algebras/fusion_rings/__init__.py | 1 - src/sage/algebras/hecke_algebras/__init__.py | 1 - src/sage/algebras/letterplace/__init__.py | 1 - src/sage/algebras/lie_algebras/__init__.py | 1 - .../lie_conformal_algebras/__init__.py | 1 - src/sage/algebras/quantum_groups/__init__.py | 1 - src/sage/algebras/quatalg/__init__.py | 1 - src/sage/algebras/steenrod/__init__.py | 1 - src/sage/arith/__init__.py | 1 - src/sage/calculus/__init__.py | 1 - src/sage/calculus/transforms/__init__.py | 1 - src/sage/categories/__init__.py | 0 src/sage/categories/examples/__init__.py | 1 - src/sage/categories/meson.build | 1 - src/sage/coding/__init__.py | 1 - src/sage/coding/codecan/__init__.py | 1 - src/sage/coding/guruswami_sudan/__init__.py | 1 - src/sage/coding/source_coding/__init__.py | 1 - src/sage/combinat/__init__.py | 1 - src/sage/combinat/chas/__init__.py | 1 - .../cluster_algebra_quiver/__init__.py | 1 - src/sage/combinat/crystals/__init__.py | 1 - src/sage/combinat/designs/__init__.py | 1 - src/sage/combinat/matrices/__init__.py | 1 - src/sage/combinat/ncsf_qsym/__init__.py | 1 - src/sage/combinat/ncsym/__init__.py | 1 - src/sage/combinat/path_tableaux/__init__.py | 1 - src/sage/combinat/posets/__init__.py | 1 - .../rigged_configurations/__init__.py | 1 - src/sage/combinat/root_system/__init__.py | 1 - src/sage/combinat/sf/__init__.py | 1 - src/sage/combinat/species/__init__.py | 1 - src/sage/combinat/words/__init__.py | 1 - src/sage/crypto/block_cipher/__init__.py | 1 - src/sage/crypto/public_key/__init__.py | 1 - src/sage/data_structures/__init__.py | 1 - src/sage/data_structures/meson.build | 1 - src/sage/databases/__init__.py | 1 - src/sage/dynamics/__init__.py | 1 - .../dynamics/arithmetic_dynamics/__init__.py | 1 - .../dynamics/cellular_automata/__init__.py | 1 - .../dynamics/complex_dynamics/__init__.py | 1 - src/sage/ext/__init__.py | 1 - src/sage/functions/__init__.py | 1 - src/sage/game_theory/__init__.py | 1 - src/sage/games/__init__.py | 1 - src/sage/geometry/__init__.py | 1 - .../geometry/hyperbolic_space/__init__.py | 1 - .../hyperplane_arrangement/__init__.py | 1 - src/sage/geometry/polyhedron/__init__.py | 1 - .../combinatorial_polyhedron/__init__.py | 1 - .../geometry/polyhedron/modules/__init__.py | 1 - .../geometry/riemannian_manifolds/__init__.py | 1 - src/sage/geometry/triangulation/__init__.py | 1 - src/sage/graphs/__init__.py | 1 - src/sage/graphs/base/__init__.py | 1 - src/sage/graphs/generators/__init__.py | 1 - .../graphs/graph_decompositions/__init__.py | 1 - src/sage/groups/__init__.py | 1 - src/sage/groups/abelian_gps/__init__.py | 1 - src/sage/groups/additive_abelian/__init__.py | 1 - src/sage/groups/affine_gps/__init__.py | 1 - src/sage/groups/lie_gps/__init__.py | 1 - src/sage/groups/matrix_gps/__init__.py | 1 - src/sage/groups/misc_gps/__init__.py | 1 - src/sage/groups/perm_gps/__init__.py | 1 - .../groups/perm_gps/partn_ref/__init__.py | 1 - .../groups/perm_gps/partn_ref2/__init__.py | 1 - .../semimonomial_transformations/__init__.py | 1 - src/sage/homology/__init__.py | 1 - src/sage/interacts/__init__.py | 1 - src/sage/interfaces/__init__.py | 1 - src/sage/knots/__init__.py | 1 - src/sage/lfunctions/__init__.py | 1 - src/sage/libs/__init__.py | 0 src/sage/libs/gap/__init__.py | 0 src/sage/libs/mpc/__init__.py | 1 - src/sage/libs/mpfi/__init__.py | 1 - src/sage/libs/mpfr/__init__.py | 1 - src/sage/libs/polybori/__init__.py | 1 - src/sage/logic/__init__.py | 1 - src/sage/manifolds/__init__.py | 1 - src/sage/manifolds/differentiable/__init__.py | 1 - .../differentiable/examples/__init__.py | 1 - src/sage/manifolds/subsets/__init__.py | 1 - src/sage/matrix/__init__.py | 1 - src/sage/matrix/meson.build | 1 - src/sage/matroids/__init__.py | 1 - src/sage/meson.build | 1 - src/sage/misc/__init__.py | 0 src/sage/misc/meson.build | 1 - src/sage/modular/__init__.py | 1 - src/sage/modular/abvar/__init__.py | 1 - src/sage/modular/arithgroup/__init__.py | 1 - src/sage/modular/btquotients/__init__.py | 1 - src/sage/modular/hecke/__init__.py | 1 - src/sage/modular/local_comp/__init__.py | 1 - src/sage/modular/modform/__init__.py | 1 - .../modular/modform_hecketriangle/__init__.py | 1 - src/sage/modular/modsym/__init__.py | 1 - src/sage/modular/overconvergent/__init__.py | 1 - src/sage/modular/pollack_stevens/__init__.py | 1 - src/sage/modular/quasimodform/__init__.py | 1 - src/sage/modular/quatalg/__init__.py | 1 - src/sage/modular/ssmod/__init__.py | 1 - src/sage/modules/__init__.py | 1 - src/sage/modules/fg_pid/__init__.py | 1 - src/sage/modules/fp_graded/__init__.py | 1 - .../modules/fp_graded/steenrod/__init__.py | 1 - src/sage/modules/with_basis/__init__.py | 1 - src/sage/monoids/__init__.py | 1 - src/sage/numerical/__init__.py | 1 - src/sage/numerical/backends/__init__.py | 1 - src/sage/parallel/__init__.py | 1 - src/sage/plot/__init__.py | 1 - src/sage/plot/plot3d/__init__.py | 1 - src/sage/probability/__init__.py | 1 - src/sage/quadratic_forms/__init__.py | 1 - src/sage/quadratic_forms/genera/__init__.py | 1 - src/sage/quivers/__init__.py | 1 - src/sage/rings/__init__.py | 1 - src/sage/rings/asymptotic/__init__.py | 1 - src/sage/rings/convert/__init__.py | 1 - src/sage/rings/finite_rings/__init__.py | 1 - src/sage/rings/function_field/__init__.py | 1 - .../drinfeld_modules/__init__.py | 1 - src/sage/rings/invariants/__init__.py | 1 - src/sage/rings/meson.build | 1 - src/sage/rings/number_field/__init__.py | 1 - src/sage/rings/padics/__init__.py | 1 - src/sage/rings/polynomial/__init__.py | 1 - src/sage/rings/polynomial/padics/__init__.py | 1 - src/sage/rings/polynomial/weil/__init__.py | 1 - src/sage/rings/semirings/__init__.py | 1 - src/sage/rings/valuation/__init__.py | 1 - src/sage/sandpiles/__init__.py | 1 - src/sage/sat/__init__.py | 1 - src/sage/schemes/__init__.py | 1 - src/sage/schemes/affine/__init__.py | 1 - src/sage/schemes/berkovich/__init__.py | 1 - src/sage/schemes/curves/__init__.py | 1 - src/sage/schemes/cyclic_covers/__init__.py | 1 - src/sage/schemes/elliptic_curves/__init__.py | 1 - src/sage/schemes/generic/__init__.py | 1 - .../schemes/hyperelliptic_curves/__init__.py | 1 - src/sage/schemes/jacobians/__init__.py | 1 - src/sage/schemes/plane_conics/__init__.py | 1 - src/sage/schemes/plane_quartics/__init__.py | 1 - .../schemes/product_projective/__init__.py | 1 - src/sage/schemes/projective/__init__.py | 1 - src/sage/schemes/riemann_surfaces/__init__.py | 1 - src/sage/schemes/toric/__init__.py | 1 - src/sage/schemes/toric/sheaf/__init__.py | 1 - src/sage/sets/__init__.py | 1 - src/sage/stats/__init__.py | 1 - src/sage/stats/distributions/__init__.py | 1 - src/sage/stats/hmm/__init__.py | 1 - src/sage/symbolic/__init__.py | 1 - src/sage/symbolic/integration/__init__.py | 1 - src/sage/symbolic/meson.build | 1 - src/sage/tensor/__init__.py | 1 - src/sage/tensor/modules/__init__.py | 1 - src/sage/topology/__init__.py | 1 - src/sage/typeset/__init__.py | 1 - 169 files changed, 341 insertions(+), 165 deletions(-) delete mode 100644 src/sage/__init__.py delete mode 100644 src/sage/algebras/__init__.py delete mode 100644 src/sage/algebras/finite_dimensional_algebras/__init__.py delete mode 100644 src/sage/algebras/fusion_rings/__init__.py delete mode 100644 src/sage/algebras/hecke_algebras/__init__.py delete mode 100644 src/sage/algebras/letterplace/__init__.py delete mode 100644 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src/sage/combinat/crystals/__init__.py delete mode 100644 src/sage/combinat/designs/__init__.py delete mode 100644 src/sage/combinat/matrices/__init__.py delete mode 100644 src/sage/combinat/ncsf_qsym/__init__.py delete mode 100644 src/sage/combinat/ncsym/__init__.py delete mode 100644 src/sage/combinat/path_tableaux/__init__.py delete mode 100644 src/sage/combinat/posets/__init__.py delete mode 100644 src/sage/combinat/rigged_configurations/__init__.py delete mode 100644 src/sage/combinat/root_system/__init__.py delete mode 100644 src/sage/combinat/sf/__init__.py delete mode 100644 src/sage/combinat/species/__init__.py delete mode 100644 src/sage/combinat/words/__init__.py delete mode 100644 src/sage/crypto/block_cipher/__init__.py delete mode 100644 src/sage/crypto/public_key/__init__.py delete mode 100644 src/sage/data_structures/__init__.py delete mode 100644 src/sage/databases/__init__.py delete mode 100644 src/sage/dynamics/__init__.py delete mode 100644 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src/sage/graphs/base/__init__.py delete mode 100644 src/sage/graphs/generators/__init__.py delete mode 100644 src/sage/graphs/graph_decompositions/__init__.py delete mode 100644 src/sage/groups/__init__.py delete mode 100644 src/sage/groups/abelian_gps/__init__.py delete mode 100644 src/sage/groups/additive_abelian/__init__.py delete mode 100644 src/sage/groups/affine_gps/__init__.py delete mode 100644 src/sage/groups/lie_gps/__init__.py delete mode 100644 src/sage/groups/matrix_gps/__init__.py delete mode 100644 src/sage/groups/misc_gps/__init__.py delete mode 100644 src/sage/groups/perm_gps/__init__.py delete mode 100644 src/sage/groups/perm_gps/partn_ref/__init__.py delete mode 100644 src/sage/groups/perm_gps/partn_ref2/__init__.py delete mode 100644 src/sage/groups/semimonomial_transformations/__init__.py delete mode 100644 src/sage/homology/__init__.py delete mode 100644 src/sage/interacts/__init__.py delete mode 100644 src/sage/interfaces/__init__.py delete mode 100644 src/sage/knots/__init__.py delete mode 100644 src/sage/lfunctions/__init__.py delete mode 100644 src/sage/libs/__init__.py delete mode 100644 src/sage/libs/gap/__init__.py delete mode 100644 src/sage/libs/mpc/__init__.py delete mode 100644 src/sage/libs/mpfi/__init__.py delete mode 100644 src/sage/libs/mpfr/__init__.py delete mode 100644 src/sage/libs/polybori/__init__.py delete mode 100644 src/sage/logic/__init__.py delete mode 100644 src/sage/manifolds/__init__.py delete mode 100644 src/sage/manifolds/differentiable/__init__.py delete mode 100644 src/sage/manifolds/differentiable/examples/__init__.py delete mode 100644 src/sage/manifolds/subsets/__init__.py delete mode 100644 src/sage/matrix/__init__.py delete mode 100644 src/sage/matroids/__init__.py delete mode 100644 src/sage/misc/__init__.py delete mode 100644 src/sage/modular/__init__.py delete mode 100644 src/sage/modular/abvar/__init__.py delete mode 100644 src/sage/modular/arithgroup/__init__.py delete mode 100644 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src/sage/numerical/__init__.py delete mode 100644 src/sage/numerical/backends/__init__.py delete mode 100644 src/sage/parallel/__init__.py delete mode 100644 src/sage/plot/__init__.py delete mode 100644 src/sage/plot/plot3d/__init__.py delete mode 100644 src/sage/probability/__init__.py delete mode 100644 src/sage/quadratic_forms/__init__.py delete mode 100644 src/sage/quadratic_forms/genera/__init__.py delete mode 100644 src/sage/quivers/__init__.py delete mode 100644 src/sage/rings/__init__.py delete mode 100644 src/sage/rings/asymptotic/__init__.py delete mode 100644 src/sage/rings/convert/__init__.py delete mode 100644 src/sage/rings/finite_rings/__init__.py delete mode 100644 src/sage/rings/function_field/__init__.py delete mode 100644 src/sage/rings/function_field/drinfeld_modules/__init__.py delete mode 100644 src/sage/rings/invariants/__init__.py delete mode 100644 src/sage/rings/number_field/__init__.py delete mode 100644 src/sage/rings/padics/__init__.py delete mode 100644 src/sage/rings/polynomial/__init__.py delete mode 100644 src/sage/rings/polynomial/padics/__init__.py delete mode 100644 src/sage/rings/polynomial/weil/__init__.py delete mode 100644 src/sage/rings/semirings/__init__.py delete mode 100644 src/sage/rings/valuation/__init__.py delete mode 100644 src/sage/sandpiles/__init__.py delete mode 100644 src/sage/sat/__init__.py delete mode 100644 src/sage/schemes/__init__.py delete mode 100644 src/sage/schemes/affine/__init__.py delete mode 100644 src/sage/schemes/berkovich/__init__.py delete mode 100644 src/sage/schemes/curves/__init__.py delete mode 100644 src/sage/schemes/cyclic_covers/__init__.py delete mode 100644 src/sage/schemes/elliptic_curves/__init__.py delete mode 100644 src/sage/schemes/generic/__init__.py delete mode 100644 src/sage/schemes/hyperelliptic_curves/__init__.py delete mode 100644 src/sage/schemes/jacobians/__init__.py delete mode 100644 src/sage/schemes/plane_conics/__init__.py delete mode 100644 src/sage/schemes/plane_quartics/__init__.py delete mode 100644 src/sage/schemes/product_projective/__init__.py delete mode 100644 src/sage/schemes/projective/__init__.py delete mode 100644 src/sage/schemes/riemann_surfaces/__init__.py delete mode 100644 src/sage/schemes/toric/__init__.py delete mode 100644 src/sage/schemes/toric/sheaf/__init__.py delete mode 100644 src/sage/sets/__init__.py delete mode 100644 src/sage/stats/__init__.py delete mode 100644 src/sage/stats/distributions/__init__.py delete mode 100644 src/sage/stats/hmm/__init__.py delete mode 100644 src/sage/symbolic/__init__.py delete mode 100644 src/sage/symbolic/integration/__init__.py delete mode 100644 src/sage/tensor/__init__.py delete mode 100644 src/sage/tensor/modules/__init__.py delete mode 100644 src/sage/topology/__init__.py delete mode 100644 src/sage/typeset/__init__.py diff --git a/.gitignore b/.gitignore index d96270b2ccf..2a5d909b53a 100644 --- a/.gitignore +++ b/.gitignore @@ -301,6 +301,168 @@ src/.coverage/ worktree* **/worktree* -# meson build directory +# Meson build directory builddir builddir-* +build-install +# Meson temporary files +src/sage/interfaces/__init__.py +src/sage/crypto/block_cipher/__init__.py +src/sage/crypto/public_key/__init__.py +src/sage/logic/__init__.py +src/sage/parallel/__init__.py +src/sage/dynamics/cellular_automata/__init__.py +src/sage/dynamics/arithmetic_dynamics/__init__.py +src/sage/dynamics/__init__.py +src/sage/dynamics/complex_dynamics/__init__.py +src/sage/knots/__init__.py +src/sage/topology/__init__.py +src/sage/functions/__init__.py +src/sage/manifolds/subsets/__init__.py +src/sage/manifolds/__init__.py +src/sage/manifolds/differentiable/examples/__init__.py +src/sage/manifolds/differentiable/__init__.py +src/sage/coding/source_coding/__init__.py +src/sage/coding/guruswami_sudan/__init__.py +src/sage/coding/__init__.py +src/sage/coding/codecan/__init__.py +src/sage/games/__init__.py +src/sage/quivers/__init__.py +src/sage/schemes/cyclic_covers/__init__.py +src/sage/schemes/plane_conics/__init__.py +src/sage/schemes/curves/__init__.py +src/sage/schemes/plane_quartics/__init__.py +src/sage/schemes/jacobians/__init__.py +src/sage/schemes/toric/sheaf/__init__.py +src/sage/schemes/toric/__init__.py +src/sage/schemes/product_projective/__init__.py +src/sage/schemes/elliptic_curves/__init__.py +src/sage/schemes/riemann_surfaces/__init__.py +src/sage/schemes/hyperelliptic_curves/__init__.py +src/sage/schemes/berkovich/__init__.py +src/sage/schemes/generic/__init__.py +src/sage/schemes/projective/__init__.py +src/sage/schemes/__init__.py +src/sage/schemes/affine/__init__.py +src/sage/modular/hecke/__init__.py +src/sage/modular/pollack_stevens/__init__.py +src/sage/modular/overconvergent/__init__.py +src/sage/modular/modform/__init__.py +src/sage/modular/quasimodform/__init__.py +src/sage/modular/modsym/__init__.py +src/sage/modular/local_comp/__init__.py +src/sage/modular/quatalg/__init__.py +src/sage/modular/ssmod/__init__.py +src/sage/modular/abvar/__init__.py +src/sage/modular/__init__.py +src/sage/modular/btquotients/__init__.py +src/sage/modular/arithgroup/__init__.py +src/sage/modular/modform_hecketriangle/__init__.py +src/sage/combinat/cluster_algebra_quiver/__init__.py +src/sage/combinat/root_system/__init__.py +src/sage/combinat/species/__init__.py +src/sage/combinat/designs/__init__.py +src/sage/combinat/posets/__init__.py +src/sage/combinat/matrices/__init__.py +src/sage/combinat/rigged_configurations/__init__.py +src/sage/combinat/ncsf_qsym/__init__.py +src/sage/combinat/path_tableaux/__init__.py +src/sage/combinat/sf/__init__.py +src/sage/combinat/__init__.py +src/sage/combinat/chas/__init__.py +src/sage/combinat/ncsym/__init__.py +src/sage/combinat/words/__init__.py +src/sage/combinat/crystals/__init__.py +src/sage/tensor/modules/__init__.py +src/sage/tensor/__init__.py +src/sage/groups/matrix_gps/__init__.py +src/sage/groups/semimonomial_transformations/__init__.py +src/sage/groups/perm_gps/partn_ref2/__init__.py +src/sage/groups/perm_gps/partn_ref/__init__.py +src/sage/groups/perm_gps/__init__.py +src/sage/groups/__init__.py +src/sage/groups/affine_gps/__init__.py +src/sage/groups/abelian_gps/__init__.py +src/sage/groups/additive_abelian/__init__.py +src/sage/groups/lie_gps/__init__.py +src/sage/groups/misc_gps/__init__.py +src/sage/symbolic/__init__.py +src/sage/symbolic/integration/__init__.py +src/sage/lfunctions/__init__.py +src/sage/arith/__init__.py +src/sage/ext/__init__.py +src/sage/categories/examples/__init__.py +src/sage/categories/__init__.py +src/sage/modules/fg_pid/__init__.py +src/sage/modules/__init__.py +src/sage/modules/with_basis/__init__.py +src/sage/modules/fp_graded/steenrod/__init__.py +src/sage/modules/fp_graded/__init__.py +src/sage/misc/__init__.py +src/sage/rings/convert/__init__.py +src/sage/rings/invariants/__init__.py +src/sage/rings/finite_rings/__init__.py +src/sage/rings/function_field/__init__.py +src/sage/rings/function_field/drinfeld_modules/__init__.py +src/sage/rings/semirings/__init__.py +src/sage/rings/number_field/__init__.py +src/sage/rings/__init__.py +src/sage/rings/padics/__init__.py +src/sage/rings/valuation/__init__.py +src/sage/rings/asymptotic/__init__.py +src/sage/rings/polynomial/weil/__init__.py +src/sage/rings/polynomial/__init__.py +src/sage/rings/polynomial/padics/__init__.py +src/sage/monoids/__init__.py +src/sage/matrix/__init__.py +src/sage/matroids/__init__.py +src/sage/interacts/__init__.py +src/sage/__init__.py +src/sage/plot/__init__.py +src/sage/plot/plot3d/__init__.py +src/sage/typeset/__init__.py +src/sage/algebras/lie_conformal_algebras/__init__.py +src/sage/algebras/fusion_rings/__init__.py +src/sage/algebras/letterplace/__init__.py +src/sage/algebras/quatalg/__init__.py +src/sage/algebras/steenrod/__init__.py +src/sage/algebras/finite_dimensional_algebras/__init__.py +src/sage/algebras/__init__.py +src/sage/algebras/hecke_algebras/__init__.py +src/sage/algebras/lie_algebras/__init__.py +src/sage/algebras/quantum_groups/__init__.py +src/sage/quadratic_forms/genera/__init__.py +src/sage/quadratic_forms/__init__.py +src/sage/game_theory/__init__.py +src/sage/sandpiles/__init__.py +src/sage/sat/__init__.py +src/sage/homology/__init__.py +src/sage/geometry/riemannian_manifolds/__init__.py +src/sage/geometry/hyperplane_arrangement/__init__.py +src/sage/geometry/triangulation/__init__.py +src/sage/geometry/polyhedron/modules/__init__.py +src/sage/geometry/polyhedron/__init__.py +src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py +src/sage/geometry/__init__.py +src/sage/geometry/hyperbolic_space/__init__.py +src/sage/sets/__init__.py +src/sage/probability/__init__.py +src/sage/numerical/backends/__init__.py +src/sage/numerical/__init__.py +src/sage/data_structures/__init__.py +src/sage/graphs/graph_decompositions/__init__.py +src/sage/graphs/generators/__init__.py +src/sage/graphs/__init__.py +src/sage/graphs/base/__init__.py +src/sage/databases/__init__.py +src/sage/stats/hmm/__init__.py +src/sage/stats/__init__.py +src/sage/stats/distributions/__init__.py +src/sage/libs/gap/__init__.py +src/sage/libs/mpfi/__init__.py +src/sage/libs/__init__.py +src/sage/libs/polybori/__init__.py +src/sage/libs/mpfr/__init__.py +src/sage/libs/mpc/__init__.py +src/sage/calculus/transforms/__init__.py +src/sage/calculus/__init__.py diff --git a/meson.build b/meson.build index 4287f516acc..8e4a30401bf 100644 --- a/meson.build +++ b/meson.build @@ -32,4 +32,182 @@ if py_with_pytest.found() ) endif +# Workaround for missing init files (Cython doesn't handle namespace packages well) +create_files_command = [ + 'python3', + '-c', + ''' +import os +content = "# Here so that cython creates the correct module name" +file_paths = [ + 'src/sage/interfaces/__init__.py', + 'src/sage/crypto/block_cipher/__init__.py', + 'src/sage/crypto/public_key/__init__.py', + 'src/sage/logic/__init__.py', + 'src/sage/parallel/__init__.py', + 'src/sage/dynamics/cellular_automata/__init__.py', + 'src/sage/dynamics/arithmetic_dynamics/__init__.py', + 'src/sage/dynamics/__init__.py', + 'src/sage/dynamics/complex_dynamics/__init__.py', + 'src/sage/knots/__init__.py', + 'src/sage/topology/__init__.py', + 'src/sage/functions/__init__.py', + 'src/sage/manifolds/subsets/__init__.py', + 'src/sage/manifolds/__init__.py', + 'src/sage/manifolds/differentiable/examples/__init__.py', + 'src/sage/manifolds/differentiable/__init__.py', + 'src/sage/coding/source_coding/__init__.py', + 'src/sage/coding/guruswami_sudan/__init__.py', + 'src/sage/coding/__init__.py', + 'src/sage/coding/codecan/__init__.py', + 'src/sage/games/__init__.py', + 'src/sage/quivers/__init__.py', + 'src/sage/schemes/cyclic_covers/__init__.py', + 'src/sage/schemes/plane_conics/__init__.py', + 'src/sage/schemes/curves/__init__.py', + 'src/sage/schemes/plane_quartics/__init__.py', + 'src/sage/schemes/jacobians/__init__.py', + 'src/sage/schemes/toric/sheaf/__init__.py', + 'src/sage/schemes/toric/__init__.py', + 'src/sage/schemes/product_projective/__init__.py', + 'src/sage/schemes/elliptic_curves/__init__.py', + 'src/sage/schemes/riemann_surfaces/__init__.py', + 'src/sage/schemes/hyperelliptic_curves/__init__.py', + 'src/sage/schemes/berkovich/__init__.py', + 'src/sage/schemes/generic/__init__.py', + 'src/sage/schemes/projective/__init__.py', + 'src/sage/schemes/__init__.py', + 'src/sage/schemes/affine/__init__.py', + 'src/sage/modular/hecke/__init__.py', + 'src/sage/modular/pollack_stevens/__init__.py', + 'src/sage/modular/overconvergent/__init__.py', + 'src/sage/modular/modform/__init__.py', + 'src/sage/modular/quasimodform/__init__.py', + 'src/sage/modular/modsym/__init__.py', + 'src/sage/modular/local_comp/__init__.py', + 'src/sage/modular/quatalg/__init__.py', + 'src/sage/modular/ssmod/__init__.py', + 'src/sage/modular/abvar/__init__.py', + 'src/sage/modular/__init__.py', + 'src/sage/modular/btquotients/__init__.py', + 'src/sage/modular/arithgroup/__init__.py', + 'src/sage/modular/modform_hecketriangle/__init__.py', + 'src/sage/combinat/cluster_algebra_quiver/__init__.py', + 'src/sage/combinat/root_system/__init__.py', + 'src/sage/combinat/species/__init__.py', + 'src/sage/combinat/designs/__init__.py', + 'src/sage/combinat/posets/__init__.py', + 'src/sage/combinat/matrices/__init__.py', + 'src/sage/combinat/rigged_configurations/__init__.py', + 'src/sage/combinat/ncsf_qsym/__init__.py', + 'src/sage/combinat/path_tableaux/__init__.py', + 'src/sage/combinat/sf/__init__.py', + 'src/sage/combinat/__init__.py', + 'src/sage/combinat/chas/__init__.py', + 'src/sage/combinat/ncsym/__init__.py', + 'src/sage/combinat/words/__init__.py', + 'src/sage/combinat/crystals/__init__.py', + 'src/sage/tensor/modules/__init__.py', + 'src/sage/tensor/__init__.py', + 'src/sage/groups/matrix_gps/__init__.py', + 'src/sage/groups/semimonomial_transformations/__init__.py', + 'src/sage/groups/perm_gps/partn_ref2/__init__.py', + 'src/sage/groups/perm_gps/partn_ref/__init__.py', + 'src/sage/groups/perm_gps/__init__.py', + 'src/sage/groups/__init__.py', + 'src/sage/groups/affine_gps/__init__.py', + 'src/sage/groups/abelian_gps/__init__.py', + 'src/sage/groups/additive_abelian/__init__.py', + 'src/sage/groups/lie_gps/__init__.py', + 'src/sage/groups/misc_gps/__init__.py', + 'src/sage/symbolic/__init__.py', + 'src/sage/symbolic/integration/__init__.py', + 'src/sage/lfunctions/__init__.py', + 'src/sage/arith/__init__.py', + 'src/sage/ext/__init__.py', + 'src/sage/categories/examples/__init__.py', + 'src/sage/categories/__init__.py', + 'src/sage/modules/fg_pid/__init__.py', + 'src/sage/modules/__init__.py', + 'src/sage/modules/with_basis/__init__.py', + 'src/sage/modules/fp_graded/steenrod/__init__.py', + 'src/sage/modules/fp_graded/__init__.py', + 'src/sage/misc/__init__.py', + 'src/sage/rings/convert/__init__.py', + 'src/sage/rings/invariants/__init__.py', + 'src/sage/rings/finite_rings/__init__.py', + 'src/sage/rings/function_field/__init__.py', + 'src/sage/rings/function_field/drinfeld_modules/__init__.py', + 'src/sage/rings/semirings/__init__.py', + 'src/sage/rings/number_field/__init__.py', + 'src/sage/rings/__init__.py', + 'src/sage/rings/padics/__init__.py', + 'src/sage/rings/valuation/__init__.py', + 'src/sage/rings/asymptotic/__init__.py', + 'src/sage/rings/polynomial/weil/__init__.py', + 'src/sage/rings/polynomial/__init__.py', + 'src/sage/rings/polynomial/padics/__init__.py', + 'src/sage/monoids/__init__.py', + 'src/sage/matrix/__init__.py', + 'src/sage/matroids/__init__.py', + 'src/sage/interacts/__init__.py', + 'src/sage/__init__.py', + 'src/sage/plot/__init__.py', + 'src/sage/plot/plot3d/__init__.py', + 'src/sage/typeset/__init__.py', + 'src/sage/algebras/lie_conformal_algebras/__init__.py', + 'src/sage/algebras/fusion_rings/__init__.py', + 'src/sage/algebras/letterplace/__init__.py', + 'src/sage/algebras/quatalg/__init__.py', + 'src/sage/algebras/steenrod/__init__.py', + 'src/sage/algebras/finite_dimensional_algebras/__init__.py', + 'src/sage/algebras/__init__.py', + 'src/sage/algebras/hecke_algebras/__init__.py', + 'src/sage/algebras/lie_algebras/__init__.py', + 'src/sage/algebras/quantum_groups/__init__.py', + 'src/sage/quadratic_forms/genera/__init__.py', + 'src/sage/quadratic_forms/__init__.py', + 'src/sage/game_theory/__init__.py', + 'src/sage/sandpiles/__init__.py', + 'src/sage/sat/__init__.py', + 'src/sage/homology/__init__.py', + 'src/sage/geometry/riemannian_manifolds/__init__.py', + 'src/sage/geometry/hyperplane_arrangement/__init__.py', + 'src/sage/geometry/triangulation/__init__.py', + 'src/sage/geometry/polyhedron/modules/__init__.py', + 'src/sage/geometry/polyhedron/__init__.py', + 'src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py', + 'src/sage/geometry/__init__.py', + 'src/sage/geometry/hyperbolic_space/__init__.py', + 'src/sage/sets/__init__.py', + 'src/sage/probability/__init__.py', + 'src/sage/numerical/backends/__init__.py', + 'src/sage/numerical/__init__.py', + 'src/sage/data_structures/__init__.py', + 'src/sage/graphs/graph_decompositions/__init__.py', + 'src/sage/graphs/generators/__init__.py', + 'src/sage/graphs/__init__.py', + 'src/sage/graphs/base/__init__.py', + 'src/sage/databases/__init__.py', + 'src/sage/stats/hmm/__init__.py', + 'src/sage/stats/__init__.py', + 'src/sage/stats/distributions/__init__.py', + 'src/sage/libs/gap/__init__.py', + 'src/sage/libs/mpfi/__init__.py', + 'src/sage/libs/__init__.py', + 'src/sage/libs/polybori/__init__.py', + 'src/sage/libs/mpfr/__init__.py', + 'src/sage/libs/mpc/__init__.py', + 'src/sage/calculus/transforms/__init__.py', + 'src/sage/calculus/__init__.py', +] +for path in file_paths: + path = "''' + meson.current_source_dir() + '''/" + path + os.makedirs(os.path.dirname(path), exist_ok=True) + with open(path, 'w') as f: + f.write(content) + ''', +] +run_command(create_files_command) + subdir('src') diff --git a/src/sage/__init__.py b/src/sage/__init__.py deleted file mode 100644 index f6eb5289696..00000000000 --- a/src/sage/__init__.py +++ /dev/null @@ -1,2 +0,0 @@ -# This is only here to mark the sage directory as a Python package -# (so that cython determines the correct module name) diff --git a/src/sage/algebras/__init__.py b/src/sage/algebras/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/finite_dimensional_algebras/__init__.py b/src/sage/algebras/finite_dimensional_algebras/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/finite_dimensional_algebras/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/fusion_rings/__init__.py b/src/sage/algebras/fusion_rings/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/fusion_rings/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/hecke_algebras/__init__.py b/src/sage/algebras/hecke_algebras/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/hecke_algebras/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/letterplace/__init__.py b/src/sage/algebras/letterplace/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/letterplace/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/lie_algebras/__init__.py b/src/sage/algebras/lie_algebras/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/lie_algebras/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/lie_conformal_algebras/__init__.py b/src/sage/algebras/lie_conformal_algebras/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/lie_conformal_algebras/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/quantum_groups/__init__.py b/src/sage/algebras/quantum_groups/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/quantum_groups/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/quatalg/__init__.py b/src/sage/algebras/quatalg/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/quatalg/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/algebras/steenrod/__init__.py b/src/sage/algebras/steenrod/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/algebras/steenrod/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/arith/__init__.py b/src/sage/arith/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/arith/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/calculus/__init__.py b/src/sage/calculus/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/calculus/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/calculus/transforms/__init__.py b/src/sage/calculus/transforms/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/calculus/transforms/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/categories/__init__.py b/src/sage/categories/__init__.py deleted file mode 100644 index e69de29bb2d..00000000000 diff --git a/src/sage/categories/examples/__init__.py b/src/sage/categories/examples/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/categories/examples/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/categories/meson.build b/src/sage/categories/meson.build index affc2034df2..132037fe7fd 100644 --- a/src/sage/categories/meson.build +++ b/src/sage/categories/meson.build @@ -1,5 +1,4 @@ py.install_sources( - '__init__.py', 'action.pxd', 'additive_groups.py', 'additive_magmas.py', diff --git a/src/sage/coding/__init__.py b/src/sage/coding/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/coding/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/coding/codecan/__init__.py b/src/sage/coding/codecan/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/coding/codecan/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/coding/guruswami_sudan/__init__.py b/src/sage/coding/guruswami_sudan/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/coding/guruswami_sudan/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/coding/source_coding/__init__.py b/src/sage/coding/source_coding/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/coding/source_coding/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/__init__.py b/src/sage/combinat/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/chas/__init__.py b/src/sage/combinat/chas/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/chas/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/cluster_algebra_quiver/__init__.py b/src/sage/combinat/cluster_algebra_quiver/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/cluster_algebra_quiver/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/crystals/__init__.py b/src/sage/combinat/crystals/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/crystals/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/designs/__init__.py b/src/sage/combinat/designs/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/designs/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/matrices/__init__.py b/src/sage/combinat/matrices/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/matrices/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/ncsf_qsym/__init__.py b/src/sage/combinat/ncsf_qsym/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/ncsf_qsym/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/ncsym/__init__.py b/src/sage/combinat/ncsym/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/ncsym/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/path_tableaux/__init__.py b/src/sage/combinat/path_tableaux/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/path_tableaux/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/posets/__init__.py b/src/sage/combinat/posets/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/posets/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/rigged_configurations/__init__.py b/src/sage/combinat/rigged_configurations/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/rigged_configurations/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/root_system/__init__.py b/src/sage/combinat/root_system/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/root_system/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/sf/__init__.py b/src/sage/combinat/sf/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/sf/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/species/__init__.py b/src/sage/combinat/species/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/species/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/combinat/words/__init__.py b/src/sage/combinat/words/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/combinat/words/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/crypto/block_cipher/__init__.py b/src/sage/crypto/block_cipher/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/crypto/block_cipher/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/crypto/public_key/__init__.py b/src/sage/crypto/public_key/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/crypto/public_key/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/data_structures/__init__.py b/src/sage/data_structures/__init__.py deleted file mode 100644 index a347df6f046..00000000000 --- a/src/sage/data_structures/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# So that cython creates the correct module names diff --git a/src/sage/data_structures/meson.build b/src/sage/data_structures/meson.build index de25b78721d..8a94548917b 100644 --- a/src/sage/data_structures/meson.build +++ b/src/sage/data_structures/meson.build @@ -1,5 +1,4 @@ py.install_sources( - '__init__.py', 'all.py', 'binary_matrix.pxd', 'binary_search.pxd', diff --git a/src/sage/databases/__init__.py b/src/sage/databases/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/databases/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/__init__.py b/src/sage/dynamics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/dynamics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/arithmetic_dynamics/__init__.py b/src/sage/dynamics/arithmetic_dynamics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/dynamics/arithmetic_dynamics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/cellular_automata/__init__.py b/src/sage/dynamics/cellular_automata/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/dynamics/cellular_automata/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/dynamics/complex_dynamics/__init__.py b/src/sage/dynamics/complex_dynamics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/dynamics/complex_dynamics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/ext/__init__.py b/src/sage/ext/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/ext/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/functions/__init__.py b/src/sage/functions/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/functions/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/game_theory/__init__.py b/src/sage/game_theory/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/game_theory/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/games/__init__.py b/src/sage/games/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/games/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/__init__.py b/src/sage/geometry/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/hyperbolic_space/__init__.py b/src/sage/geometry/hyperbolic_space/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/hyperbolic_space/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/hyperplane_arrangement/__init__.py b/src/sage/geometry/hyperplane_arrangement/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/hyperplane_arrangement/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/__init__.py b/src/sage/geometry/polyhedron/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/polyhedron/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py b/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/polyhedron/combinatorial_polyhedron/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/polyhedron/modules/__init__.py b/src/sage/geometry/polyhedron/modules/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/polyhedron/modules/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/riemannian_manifolds/__init__.py b/src/sage/geometry/riemannian_manifolds/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/riemannian_manifolds/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/geometry/triangulation/__init__.py b/src/sage/geometry/triangulation/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/geometry/triangulation/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/graphs/__init__.py b/src/sage/graphs/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/graphs/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/graphs/base/__init__.py b/src/sage/graphs/base/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/graphs/base/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/graphs/generators/__init__.py b/src/sage/graphs/generators/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/graphs/generators/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/graphs/graph_decompositions/__init__.py b/src/sage/graphs/graph_decompositions/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/graphs/graph_decompositions/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/__init__.py b/src/sage/groups/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/abelian_gps/__init__.py b/src/sage/groups/abelian_gps/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/abelian_gps/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/additive_abelian/__init__.py b/src/sage/groups/additive_abelian/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/additive_abelian/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/affine_gps/__init__.py b/src/sage/groups/affine_gps/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/affine_gps/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/lie_gps/__init__.py b/src/sage/groups/lie_gps/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/lie_gps/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/matrix_gps/__init__.py b/src/sage/groups/matrix_gps/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/matrix_gps/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/misc_gps/__init__.py b/src/sage/groups/misc_gps/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/misc_gps/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/__init__.py b/src/sage/groups/perm_gps/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/perm_gps/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/partn_ref/__init__.py b/src/sage/groups/perm_gps/partn_ref/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/perm_gps/partn_ref/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/perm_gps/partn_ref2/__init__.py b/src/sage/groups/perm_gps/partn_ref2/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/perm_gps/partn_ref2/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/groups/semimonomial_transformations/__init__.py b/src/sage/groups/semimonomial_transformations/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/groups/semimonomial_transformations/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/homology/__init__.py b/src/sage/homology/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/homology/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/interacts/__init__.py b/src/sage/interacts/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/interacts/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/interfaces/__init__.py b/src/sage/interfaces/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/interfaces/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/knots/__init__.py b/src/sage/knots/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/knots/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/lfunctions/__init__.py b/src/sage/lfunctions/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/lfunctions/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/libs/__init__.py b/src/sage/libs/__init__.py deleted file mode 100644 index e69de29bb2d..00000000000 diff --git a/src/sage/libs/gap/__init__.py b/src/sage/libs/gap/__init__.py deleted file mode 100644 index e69de29bb2d..00000000000 diff --git a/src/sage/libs/mpc/__init__.py b/src/sage/libs/mpc/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/libs/mpc/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpfi/__init__.py b/src/sage/libs/mpfi/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/libs/mpfi/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/libs/mpfr/__init__.py b/src/sage/libs/mpfr/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/libs/mpfr/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/libs/polybori/__init__.py b/src/sage/libs/polybori/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/libs/polybori/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/logic/__init__.py b/src/sage/logic/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/logic/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/__init__.py b/src/sage/manifolds/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/manifolds/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/differentiable/__init__.py b/src/sage/manifolds/differentiable/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/manifolds/differentiable/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/differentiable/examples/__init__.py b/src/sage/manifolds/differentiable/examples/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/manifolds/differentiable/examples/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/manifolds/subsets/__init__.py b/src/sage/manifolds/subsets/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/manifolds/subsets/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/matrix/__init__.py b/src/sage/matrix/__init__.py deleted file mode 100644 index 165aea9af28..00000000000 --- a/src/sage/matrix/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Because of relative imports diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 0ca0cf22efe..7a60938775f 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -22,7 +22,6 @@ if meataxe.found() endif py.install_sources( - '__init__.py', 'all.py', 'all__sagemath_meataxe.py', 'benchmark.py', diff --git a/src/sage/matroids/__init__.py b/src/sage/matroids/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/matroids/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/meson.build b/src/sage/meson.build index d478779f814..cace33a16bf 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -84,7 +84,6 @@ foreach package : no_processing endforeach py.install_sources( - '__init__.py', 'all.py', 'all__sagemath_bliss.py', 'all__sagemath_categories.py', diff --git a/src/sage/misc/__init__.py b/src/sage/misc/__init__.py deleted file mode 100644 index e69de29bb2d..00000000000 diff --git a/src/sage/misc/meson.build b/src/sage/misc/meson.build index ab61a412852..bd05d525252 100644 --- a/src/sage/misc/meson.build +++ b/src/sage/misc/meson.build @@ -1,5 +1,4 @@ py.install_sources( - '__init__.py', 'abstract_method.py', 'all.py', 'all__sagemath_environment.py', diff --git a/src/sage/modular/__init__.py b/src/sage/modular/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/abvar/__init__.py b/src/sage/modular/abvar/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/abvar/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/arithgroup/__init__.py b/src/sage/modular/arithgroup/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/arithgroup/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/btquotients/__init__.py b/src/sage/modular/btquotients/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/btquotients/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/hecke/__init__.py b/src/sage/modular/hecke/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/hecke/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/local_comp/__init__.py b/src/sage/modular/local_comp/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/local_comp/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/modform/__init__.py b/src/sage/modular/modform/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/modform/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/modform_hecketriangle/__init__.py b/src/sage/modular/modform_hecketriangle/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/modform_hecketriangle/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/modsym/__init__.py b/src/sage/modular/modsym/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/modsym/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/overconvergent/__init__.py b/src/sage/modular/overconvergent/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/overconvergent/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/pollack_stevens/__init__.py b/src/sage/modular/pollack_stevens/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/pollack_stevens/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/quasimodform/__init__.py b/src/sage/modular/quasimodform/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/quasimodform/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/quatalg/__init__.py b/src/sage/modular/quatalg/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/quatalg/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modular/ssmod/__init__.py b/src/sage/modular/ssmod/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modular/ssmod/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modules/__init__.py b/src/sage/modules/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modules/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modules/fg_pid/__init__.py b/src/sage/modules/fg_pid/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modules/fg_pid/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modules/fp_graded/__init__.py b/src/sage/modules/fp_graded/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modules/fp_graded/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modules/fp_graded/steenrod/__init__.py b/src/sage/modules/fp_graded/steenrod/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modules/fp_graded/steenrod/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/modules/with_basis/__init__.py b/src/sage/modules/with_basis/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/modules/with_basis/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/monoids/__init__.py b/src/sage/monoids/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/monoids/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/numerical/__init__.py b/src/sage/numerical/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/numerical/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/numerical/backends/__init__.py b/src/sage/numerical/backends/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/numerical/backends/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/parallel/__init__.py b/src/sage/parallel/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/parallel/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/plot/__init__.py b/src/sage/plot/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/plot/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/plot/plot3d/__init__.py b/src/sage/plot/plot3d/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/plot/plot3d/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/probability/__init__.py b/src/sage/probability/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/probability/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/quadratic_forms/__init__.py b/src/sage/quadratic_forms/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/quadratic_forms/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/quadratic_forms/genera/__init__.py b/src/sage/quadratic_forms/genera/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/quadratic_forms/genera/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/quivers/__init__.py b/src/sage/quivers/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/quivers/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/__init__.py b/src/sage/rings/__init__.py deleted file mode 100644 index 5ef917c1263..00000000000 --- a/src/sage/rings/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# To make cython create the correct module name diff --git a/src/sage/rings/asymptotic/__init__.py b/src/sage/rings/asymptotic/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/asymptotic/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/convert/__init__.py b/src/sage/rings/convert/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/convert/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/finite_rings/__init__.py b/src/sage/rings/finite_rings/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/finite_rings/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/function_field/__init__.py b/src/sage/rings/function_field/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/function_field/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/function_field/drinfeld_modules/__init__.py b/src/sage/rings/function_field/drinfeld_modules/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/function_field/drinfeld_modules/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/invariants/__init__.py b/src/sage/rings/invariants/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/invariants/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/meson.build b/src/sage/rings/meson.build index b55ea89b83e..9aff2d7c8f3 100644 --- a/src/sage/rings/meson.build +++ b/src/sage/rings/meson.build @@ -1,7 +1,6 @@ pthread = cc.find_library('pthread') py.install_sources( - '__init__.py', 'abc.pxd', 'algebraic_closure_finite_field.py', 'all.py', diff --git a/src/sage/rings/number_field/__init__.py b/src/sage/rings/number_field/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/number_field/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/padics/__init__.py b/src/sage/rings/padics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/padics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/__init__.py b/src/sage/rings/polynomial/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/polynomial/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/padics/__init__.py b/src/sage/rings/polynomial/padics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/polynomial/padics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/polynomial/weil/__init__.py b/src/sage/rings/polynomial/weil/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/polynomial/weil/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/semirings/__init__.py b/src/sage/rings/semirings/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/semirings/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/rings/valuation/__init__.py b/src/sage/rings/valuation/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/rings/valuation/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/sandpiles/__init__.py b/src/sage/sandpiles/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/sandpiles/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/sat/__init__.py b/src/sage/sat/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/sat/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/__init__.py b/src/sage/schemes/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/affine/__init__.py b/src/sage/schemes/affine/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/affine/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/berkovich/__init__.py b/src/sage/schemes/berkovich/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/berkovich/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/curves/__init__.py b/src/sage/schemes/curves/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/curves/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/cyclic_covers/__init__.py b/src/sage/schemes/cyclic_covers/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/cyclic_covers/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/elliptic_curves/__init__.py b/src/sage/schemes/elliptic_curves/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/elliptic_curves/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/generic/__init__.py b/src/sage/schemes/generic/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/generic/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/hyperelliptic_curves/__init__.py b/src/sage/schemes/hyperelliptic_curves/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/hyperelliptic_curves/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/jacobians/__init__.py b/src/sage/schemes/jacobians/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/jacobians/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/plane_conics/__init__.py b/src/sage/schemes/plane_conics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/plane_conics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/plane_quartics/__init__.py b/src/sage/schemes/plane_quartics/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/plane_quartics/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/product_projective/__init__.py b/src/sage/schemes/product_projective/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/product_projective/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/projective/__init__.py b/src/sage/schemes/projective/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/projective/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/riemann_surfaces/__init__.py b/src/sage/schemes/riemann_surfaces/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/riemann_surfaces/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/toric/__init__.py b/src/sage/schemes/toric/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/toric/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/schemes/toric/sheaf/__init__.py b/src/sage/schemes/toric/sheaf/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/schemes/toric/sheaf/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/sets/__init__.py b/src/sage/sets/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/sets/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/stats/__init__.py b/src/sage/stats/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/stats/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/stats/distributions/__init__.py b/src/sage/stats/distributions/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/stats/distributions/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/stats/hmm/__init__.py b/src/sage/stats/hmm/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/stats/hmm/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/symbolic/__init__.py b/src/sage/symbolic/__init__.py deleted file mode 100644 index 27875dc3de5..00000000000 --- a/src/sage/symbolic/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# here so that cython creates the correct module name diff --git a/src/sage/symbolic/integration/__init__.py b/src/sage/symbolic/integration/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/symbolic/integration/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/symbolic/meson.build b/src/sage/symbolic/meson.build index fdfc918680d..a9ca57ebf43 100644 --- a/src/sage/symbolic/meson.build +++ b/src/sage/symbolic/meson.build @@ -2,7 +2,6 @@ inc_ginac = include_directories('ginac') inc_pynac = include_directories('.') py.install_sources( - '__init__.py', 'all.py', 'assumptions.py', 'benchmark.py', diff --git a/src/sage/tensor/__init__.py b/src/sage/tensor/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/tensor/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/tensor/modules/__init__.py b/src/sage/tensor/modules/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/tensor/modules/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/topology/__init__.py b/src/sage/topology/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/topology/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name diff --git a/src/sage/typeset/__init__.py b/src/sage/typeset/__init__.py deleted file mode 100644 index 1b10e244496..00000000000 --- a/src/sage/typeset/__init__.py +++ /dev/null @@ -1 +0,0 @@ -# Here so that cython creates the correct module name From 77b279fe5020ba8f9ab644da02873c453428da2e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 16:05:05 +0000 Subject: [PATCH 164/229] specify all build dependencies --- pyproject.toml | 13 ++++++++++++- 1 file changed, 12 insertions(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 50b5d087d92..1e910cf2765 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,17 @@ [build-system] build-backend = 'mesonpy' -requires = ['meson-python', 'cython>=3.0.0'] +# Minimum requirements for the build system to execute. +requires = [ + 'meson-python', + 'cypari2 >=2.1.1', + 'cysignals >=1.11.4', + # Exclude 3.0.3 because of https://github.com/cython/cython/issues/5748 + 'cython >=3.0, != 3.0.3, <4.0', + 'gmpy2 ~=2.1.b999', + 'memory_allocator', + 'numpy >=1.19', + 'jinja2' +] [project] name = 'sagemath' From 65c08c192b0fc2e87534837a7c758aef6d71952b Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 16:08:19 +0000 Subject: [PATCH 165/229] Fix build --- src/sage/ext/meson.build | 2 +- src/sage/graphs/base/meson.build | 2 +- src/sage/graphs/graph_decompositions/meson.build | 9 +++++---- src/sage/graphs/meson.build | 2 -- src/sage/libs/meson.build | 4 +--- src/sage/matrix/matrix_mod2_dense.pxd | 2 +- src/sage/matrix/matrix_space.py | 2 +- src/sage/matrix/matrix_sparse.pxd | 2 +- src/sage/meson.build | 3 ++- src/sage/modular/meson.build | 2 +- 10 files changed, 14 insertions(+), 16 deletions(-) diff --git a/src/sage/ext/meson.build b/src/sage/ext/meson.build index d1a79eee993..73d0e85101d 100644 --- a/src/sage/ext/meson.build +++ b/src/sage/ext/meson.build @@ -13,7 +13,7 @@ py.install_sources( extension_data = { 'fast_callable' : files('fast_callable.pyx'), 'fast_eval' : files('fast_eval.pyx'), - 'memory' : files('memory.pyx') + 'memory' : files('memory.pyx'), } foreach name, pyx : extension_data diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index 92e205ceb81..5a3848c0d4a 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -34,7 +34,7 @@ endforeach extension_data_cpp = { 'boost_graph': files('boost_graph.pyx'), 'c_graph': files('c_graph.pyx'), - 'static_sparse_graph': files('static_sparse_graph.pyx'), + # 'static_sparse_graph': files('static_sparse_graph.pyx'), # fails } foreach name, pyx : extension_data_cpp diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 9a35e992bdc..e16b5a022b4 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -20,9 +20,7 @@ extension_data = { 'graph_products' : files('graph_products.pyx'), 'rankwidth' : files('rankwidth.pyx'), 'tree_decomposition' : files('tree_decomposition.pyx'), - 'vertex_separation' : files('vertex_separation.pyx'), - 'slice_decomposition' : files('slice_decomposition.pyx'), - 'tdlib' : files('tdlib.pyx'), + 'vertex_separation' : files('vertex_separation.pyx') } foreach name, pyx : extension_data @@ -36,7 +34,10 @@ foreach name, pyx : extension_data ) endforeach -extension_data_cpp = {'clique_separators': files('clique_separators.pyx')} +extension_data_cpp = { + 'clique_separators': files('clique_separators.pyx'), + 'slice_decomposition' : files('slice_decomposition.pyx'), +} foreach name, pyx : extension_data_cpp py.extension_module( diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 6ed7ee94656..4d47452322b 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -70,8 +70,6 @@ extension_data = { 'trees' : files('trees.pyx'), 'views' : files('views.pyx'), 'weakly_chordal' : files('weakly_chordal.pyx'), - 'bliss' : files('bliss.pyx'), - 'mcqd' : files('mcqd.pyx'), } foreach name, pyx : extension_data diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 2b7945f9c99..6880020a951 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -22,8 +22,6 @@ extension_data = { 'ecl' : files('ecl.pyx'), 'homfly' : files('homfly.pyx'), 'libecm' : files('libecm.pyx'), - 'meataxe' : files('meataxe.pyx'), - 'sirocco' : files('sirocco.pyx'), } dependencies = [ @@ -40,7 +38,7 @@ dependencies = [ ] if sirocco.found() - #extension_data['sirocco'] += files('sirocco.pxd') # not yet on conda + extension_data += {'sirocco': files('sirocco.pxd', 'sirocco.pyx')} dependencies += [sirocco] endif diff --git a/src/sage/matrix/matrix_mod2_dense.pxd b/src/sage/matrix/matrix_mod2_dense.pxd index ea3575ef3be..8b9965f89d8 100644 --- a/src/sage/matrix/matrix_mod2_dense.pxd +++ b/src/sage/matrix/matrix_mod2_dense.pxd @@ -1,4 +1,4 @@ -from .matrix_dense cimport Matrix_dense +from sage.matrix.matrix_dense cimport Matrix_dense from sage.libs.m4ri cimport * cdef class Matrix_mod2_dense(Matrix_dense): diff --git a/src/sage/matrix/matrix_space.py b/src/sage/matrix/matrix_space.py index 431cf6f5bd9..267a818c433 100644 --- a/src/sage/matrix/matrix_space.py +++ b/src/sage/matrix/matrix_space.py @@ -383,7 +383,7 @@ def get_matrix_class(R, nrows, ncols, sparse, implementation): return Matrix_generic_dense if implementation == 'gap': - from .matrix_gap import Matrix_gap + from sage.matrix.matrix_gap import Matrix_gap return Matrix_gap raise ValueError("unknown matrix implementation %r over %r" % (implementation, R)) diff --git a/src/sage/matrix/matrix_sparse.pxd b/src/sage/matrix/matrix_sparse.pxd index 7546645a6c9..7d8878ea4d8 100644 --- a/src/sage/matrix/matrix_sparse.pxd +++ b/src/sage/matrix/matrix_sparse.pxd @@ -1,4 +1,4 @@ -from .matrix cimport Matrix +from sage.matrix.matrix cimport Matrix cdef class Matrix_sparse(Matrix): pass diff --git a/src/sage/meson.build b/src/sage/meson.build index cace33a16bf..88725b44dcc 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -53,7 +53,7 @@ if gap_exe.found() endif conf_data.set('GAP_ROOT_PATHS', gap_root_paths) -configure_file( +config_file = configure_file( input: '../../pkgs/sage-conf_conda/_sage_conf/_conf.py.in', output: 'config.py', install_dir: py.get_install_dir() / 'sage', @@ -84,6 +84,7 @@ foreach package : no_processing endforeach py.install_sources( + config_file, 'all.py', 'all__sagemath_bliss.py', 'all__sagemath_categories.py', diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build index 2d524cdd8ec..c65cca8fb89 100644 --- a/src/sage/modular/meson.build +++ b/src/sage/modular/meson.build @@ -22,7 +22,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/modular', install: true, - include_directories: [], + include_directories: [inc_cpython], dependencies: [py_dep, cysignals, gmp], ) endforeach From d11815a52faf9edbd1ca1667e99ab8bd2c86e993 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 16:08:36 +0000 Subject: [PATCH 166/229] remove subprojects for now --- subprojects/.gitignore | 8 --- subprojects/fflas-ffpack.wrap | 6 -- subprojects/flint-cmake.wrap | 6 -- subprojects/flint/meson.build | 15 ----- subprojects/gap.wrap | 6 -- subprojects/givaro.wrap | 6 -- subprojects/lcalc.wrap | 7 --- subprojects/linbox-1.6.3.wrap | 6 -- subprojects/linbox-1.7.0.wrap | 6 -- .../packagefiles/fflas-ffpack/meson.build | 8 --- subprojects/packagefiles/gap/meson.build | 8 --- subprojects/packagefiles/givaro/meson.build | 8 --- subprojects/packagefiles/lcalc/meson.build | 24 -------- .../lcalc/src/libLfunction/lcalc/meson.build | 6 -- .../lcalc/src/libLfunction/meson.build | 57 ------------------- .../packagefiles/lcalc/src/meson.build | 18 ------ subprojects/packagefiles/linbox/meson.build | 8 --- 17 files changed, 203 deletions(-) delete mode 100644 subprojects/.gitignore delete mode 100644 subprojects/fflas-ffpack.wrap delete mode 100644 subprojects/flint-cmake.wrap delete mode 100644 subprojects/flint/meson.build delete mode 100644 subprojects/gap.wrap delete mode 100644 subprojects/givaro.wrap delete mode 100644 subprojects/lcalc.wrap delete mode 100644 subprojects/linbox-1.6.3.wrap delete mode 100644 subprojects/linbox-1.7.0.wrap delete mode 100644 subprojects/packagefiles/fflas-ffpack/meson.build delete mode 100644 subprojects/packagefiles/gap/meson.build delete mode 100644 subprojects/packagefiles/givaro/meson.build delete mode 100644 subprojects/packagefiles/lcalc/meson.build delete mode 100644 subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build delete mode 100644 subprojects/packagefiles/lcalc/src/libLfunction/meson.build delete mode 100644 subprojects/packagefiles/lcalc/src/meson.build delete mode 100644 subprojects/packagefiles/linbox/meson.build diff --git a/subprojects/.gitignore b/subprojects/.gitignore deleted file mode 100644 index a37725ef03c..00000000000 --- a/subprojects/.gitignore +++ /dev/null @@ -1,8 +0,0 @@ -packagecache - -flint-*/ -lcalc-*/ -linbox-*/ -fflas-ffpack-*/ -givaro-*/ -gap-*/ diff --git a/subprojects/fflas-ffpack.wrap b/subprojects/fflas-ffpack.wrap deleted file mode 100644 index a8f7c4c7396..00000000000 --- a/subprojects/fflas-ffpack.wrap +++ /dev/null @@ -1,6 +0,0 @@ -[wrap-file] -directory=fflas-ffpack-2.5.0 -source_url=https://github.com/linbox-team/fflas-ffpack/releases/download/v2.5.0/fflas-ffpack-2.5.0.tar.gz -source_filename=fflas-ffpack-2.5.0.tar.gz -source_hash=dafb4c0835824d28e4f823748579be6e4c8889c9570c6ce9cce1e186c3ebbb23 -patch_directory=fflas-ffpack diff --git a/subprojects/flint-cmake.wrap b/subprojects/flint-cmake.wrap deleted file mode 100644 index 5e4329083a2..00000000000 --- a/subprojects/flint-cmake.wrap +++ /dev/null @@ -1,6 +0,0 @@ -[wrap-file] -directory=flint-3.0.1 -source_url=https://github.com/flintlib/flint/releases/download/v3.0.1/flint-3.0.1.tar.gz -source_filename=flint-3.0.1.tar.gz -source_hash=7b311a00503a863881eb8177dbeb84322f29399f3d7d72f3b1a4c9ba1d5794b4 - diff --git a/subprojects/flint/meson.build b/subprojects/flint/meson.build deleted file mode 100644 index 7a5493fd6b5..00000000000 --- a/subprojects/flint/meson.build +++ /dev/null @@ -1,15 +0,0 @@ -# Thin wrapper around the CMake project -# Once https://github.com/mesonbuild/meson/issues/10298 is fixed, we can remove this file and set "method=cmake" in flint.wrap - -project('flint', 'cpp', version : '3.0.1') - -cmake = import('cmake') - -subproj_flint = cmake.subproject('flint-cmake') - -py = import('python') -# Copy all src/.h files from the subproject to the build directory -# We cannot use meson's fs module due to sandboxing -run_command(py.find_installation('python3'), '-c', 'import shutil; shutil.copytree("' + meson.current_source_dir() + '/../flint-3.0.1/src", "' + meson.current_build_dir() + '/../flint-3.0.1/flint", dirs_exist_ok=True)', check: true) -flint_dep = subproj_flint.dependency('flint') -meson.override_dependency('flint', flint_dep) diff --git a/subprojects/gap.wrap b/subprojects/gap.wrap deleted file mode 100644 index 7b248243616..00000000000 --- a/subprojects/gap.wrap +++ /dev/null @@ -1,6 +0,0 @@ -[wrap-file] -directory=gap-4.12.2 -source_url=https://github.com/gap-system/gap/releases/download/v4.12.2/gap-4.12.2.tar.gz -source_filename=gap-4.12.2.tar.gz -source_hash=672308745eb78a222494ee8dd6786edd5bc331456fcc6456ac064bdb28d587a8 -patch_directory=gap diff --git a/subprojects/givaro.wrap b/subprojects/givaro.wrap deleted file mode 100644 index c44a96df2d9..00000000000 --- a/subprojects/givaro.wrap +++ /dev/null @@ -1,6 +0,0 @@ -[wrap-file] -directory=givaro-4.2.0 -source_url=https://github.com/linbox-team/givaro/releases/download/v4.2.0/givaro-4.2.0.tar.gz -source_filename=givaro-4.2.0.tar.gz -source_hash=865e228812feca971dfb6e776a7bc7ac959cf63ebd52b4f05492730a46e1f189 -patch_directory=givaro diff --git a/subprojects/lcalc.wrap b/subprojects/lcalc.wrap deleted file mode 100644 index 8e3bf899e8f..00000000000 --- a/subprojects/lcalc.wrap +++ /dev/null @@ -1,7 +0,0 @@ -[wrap-file] -directory = lcalc-2.0.5 -source_url = https://gitlab.com/sagemath/lcalc/uploads/25f029f3c02fcb6c3174972e0ac0e192/lcalc-2.0.5.tar.xz -source_filename = lcalc-2.0.5.tar.xz -source_hash = d780c385579cc6ee45fa27ccd2d3a3c4157fbb5ef8cd1b8951d1028bbc64c035 -patch_directory = lcalc - diff --git a/subprojects/linbox-1.6.3.wrap b/subprojects/linbox-1.6.3.wrap deleted file mode 100644 index baf3aa864f6..00000000000 --- a/subprojects/linbox-1.6.3.wrap +++ /dev/null @@ -1,6 +0,0 @@ -[wrap-file] -directory=linbox-1.6.3 -source_url=https://github.com/linbox-team/linbox/releases/download/v1.6.3/linbox-1.6.3.tar.gz -source_filename=linbox-1.6.3.tar.gz -source_hash=a58a188307b07c57964e844bceb99321d3043a8a4a1fccc082a54928bb9a0057 -patch_directory=linbox diff --git a/subprojects/linbox-1.7.0.wrap b/subprojects/linbox-1.7.0.wrap deleted file mode 100644 index 1cf05df4d4f..00000000000 --- a/subprojects/linbox-1.7.0.wrap +++ /dev/null @@ -1,6 +0,0 @@ -[wrap-file] -directory=linbox-1.7.0 -source_url=https://github.com/linbox-team/linbox/releases/download/v1.7.0/linbox-1.7.0.tar.gz -source_filename=linbox-1.7.0.tar.gz -source_hash=6d2159fd395be0298362dd37f6c696676237bc8e2757341fbc46520e3b466bcc -patch_directory=linbox diff --git a/subprojects/packagefiles/fflas-ffpack/meson.build b/subprojects/packagefiles/fflas-ffpack/meson.build deleted file mode 100644 index 84685284ff7..00000000000 --- a/subprojects/packagefiles/fflas-ffpack/meson.build +++ /dev/null @@ -1,8 +0,0 @@ -project('fflas-ffpack', 'c') - -mod = import('unstable-external_project') - -project = mod.add_project('configure') - -fflasffpack_dep = project.dependency('fflas-ffpack') -meson.override_dependency('fflas-ffpack', fflasffpack_dep) diff --git a/subprojects/packagefiles/gap/meson.build b/subprojects/packagefiles/gap/meson.build deleted file mode 100644 index 99dbeb23f1d..00000000000 --- a/subprojects/packagefiles/gap/meson.build +++ /dev/null @@ -1,8 +0,0 @@ -project('gap', 'c') - -mod = import('unstable-external_project') - -project = mod.add_project('configure') - -gap_dep = project.dependency('gap') -meson.override_dependency('gap', gap_dep) diff --git a/subprojects/packagefiles/givaro/meson.build b/subprojects/packagefiles/givaro/meson.build deleted file mode 100644 index 4f25dab4abb..00000000000 --- a/subprojects/packagefiles/givaro/meson.build +++ /dev/null @@ -1,8 +0,0 @@ -project('givaro', 'c') - -mod = import('unstable-external_project') - -project = mod.add_project('configure') - -givaro_dep = project.dependency('givaro') -meson.override_dependency('givaro', givaro_dep) diff --git a/subprojects/packagefiles/lcalc/meson.build b/subprojects/packagefiles/lcalc/meson.build deleted file mode 100644 index e9c77680281..00000000000 --- a/subprojects/packagefiles/lcalc/meson.build +++ /dev/null @@ -1,24 +0,0 @@ -project('lcalc', 'cpp', version : '2.0.5') - -cc = meson.get_compiler('cpp') - -# Check for all of the standard headers that we use -required_headers = ['getopt.h', 'limits.h', 'math.h', 'stdlib.h', 'string.h'] -foreach header : required_headers - cc.has_header(header, required : true) -endforeach - -# Check for GNU gengetopt -gengetopt = find_program('gengetopt', required : true) - -# Check for the mkstemp function -# We invoke mkstemp() through m4 in tests/lib/compare_fp_lists.sh. -# We already check for the necessary stdlib.h above. -cc.has_function('mkstemp', required : true) - -# TODO: add options for openmp, pari and precision as in https://gitlab.com/sagemath/lcalc/-/blob/master/configure.ac -# add_project_arguments('openmp args', language : 'cpp') - -#subdir('doc') -subdir('src') -#subdir('tests') diff --git a/subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build b/subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build deleted file mode 100644 index e390ffd87cb..00000000000 --- a/subprojects/packagefiles/lcalc/src/libLfunction/lcalc/meson.build +++ /dev/null @@ -1,6 +0,0 @@ -# Workaround for https://github.com/mesonbuild/meson/issues/2546 -fs = import('fs') -headers_copy = [] -foreach header : headers - headers_copy += fs.copyfile(header) -endforeach diff --git a/subprojects/packagefiles/lcalc/src/libLfunction/meson.build b/subprojects/packagefiles/lcalc/src/libLfunction/meson.build deleted file mode 100644 index 45b44d124d7..00000000000 --- a/subprojects/packagefiles/lcalc/src/libLfunction/meson.build +++ /dev/null @@ -1,57 +0,0 @@ -headers = files( - 'L.h', - 'Lcomplex.h', - 'Ldokchitser.h', - 'Lexplicit_formula.h', - 'Lgamma.h', - 'Lgram.h', - 'Lnumbertheory.h', - 'Lprint.h', - 'Lriemannsiegel_blfi.h', - 'Lcommon.h', - 'Ldirichlet_series.h', - 'Lelliptic.h', - 'Lfind_zeros.h', - 'Lglobals.h', - 'Lmisc.h', - 'Lnumberzeros.h', - 'Lriemannsiegel.h', - 'Lvalue.h' -) + config_h -install_headers(headers, subdir : 'lcalc') -subdir('lcalc') - -# TODO: if PRECISION_MULTIPLE -# pkginclude_HEADERS += mpreal.h Lmpreal.h -# endif - -sources = [ - 'Ldokchitser.cc', - 'Lelliptic.cc', - 'Lgamma.cc', - 'Lglobals.cc', - 'Lmisc.cc', - 'Lnumbertheory.cc', - 'Lriemannsiegel.cc' -] - -flags = [ - '-version-info 1:1:0', - # The -no-undefined flag is required to create a Windows DLL, because - # that platform does not support shared libraries with undefined - # symbols in them. libLfunction, however, does not rely on undefined - # symbols in the first place. So, we append the flag unconditionally. - '-no-undefined' -] - -lfunction = shared_library('Lfunction', sources, - #link_args : flags, # TODO: Implement? Remove? - include_directories : include_directories('.'), - dependencies : [config_h_dep], - install : true -) -lcalc_dep = declare_dependency( - link_with : lfunction, - include_directories: include_directories('.'), - sources : headers_copy -) diff --git a/subprojects/packagefiles/lcalc/src/meson.build b/subprojects/packagefiles/lcalc/src/meson.build deleted file mode 100644 index 1d7362aa7b2..00000000000 --- a/subprojects/packagefiles/lcalc/src/meson.build +++ /dev/null @@ -1,18 +0,0 @@ -conf = configuration_data() -conf.set('PRECISION_DOUBLE', 1) # TODO: add more precision options -# TODO: add more data? - -# Store this in "src" as opposed to "src/libLfunction" because -# doing the latter causes the other files in src/libLfunction -# to prefer the source-tree version of config.h from the dist -# tarball over the one in the build-tree that the user generates. -config_h = configure_file( - output : 'config.h', - configuration : conf, - install_dir : get_option('includedir'), - install : true) -config_h_dep = declare_dependency( - include_directories : include_directories('.')) - -subdir('libLfunction') -#subdir('lcalc') diff --git a/subprojects/packagefiles/linbox/meson.build b/subprojects/packagefiles/linbox/meson.build deleted file mode 100644 index daa7213f913..00000000000 --- a/subprojects/packagefiles/linbox/meson.build +++ /dev/null @@ -1,8 +0,0 @@ -project('linbox', 'c') - -mod = import('unstable-external_project') - -project = mod.add_project('configure') - -linbox_dep = project.dependency('linbox') -meson.override_dependency('linbox', linbox_dep) From 5dfe3a5f33294023fc27c719dce15cfac4e21d2a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 17:11:01 +0000 Subject: [PATCH 167/229] fix conda env --- src/environment-3.10-linux.yml | 2 + src/environment-3.10-macos.yml | 2 + src/environment-3.11-linux.yml | 2 + src/environment-3.11-macos.yml | 151 +++------------------------------ src/environment-3.9-linux.yml | 84 +----------------- src/environment-3.9-macos.yml | 2 + 6 files changed, 23 insertions(+), 220 deletions(-) diff --git a/src/environment-3.10-linux.yml b/src/environment-3.10-linux.yml index f2667c2307e..5d14a3c9a42 100644 --- a/src/environment-3.10-linux.yml +++ b/src/environment-3.10-linux.yml @@ -272,6 +272,8 @@ dependencies: - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - maxima=5.47.0=hed6455c_2 - memory-allocator=0.1.3=py310h2372a71_0 + - meson=1.5.2=pyhd8ed1ab_0 + - meson-python=0.16.0=pyh0c530f3_0 - metis=5.1.0=h59595ed_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 diff --git a/src/environment-3.10-macos.yml b/src/environment-3.10-macos.yml index 9110653e86c..e80f93d4a62 100644 --- a/src/environment-3.10-macos.yml +++ b/src/environment-3.10-macos.yml @@ -244,6 +244,8 @@ dependencies: - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - maxima=5.47.0=h2bbcd85_2 - memory-allocator=0.1.3=py310h2aa6e3c_0 + - meson=1.5.2=pyhd8ed1ab_0 + - meson-python=0.16.0=pyh0c530f3_0 - metis=5.1.0=h13dd4ca_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=h91ba8db_0 diff --git a/src/environment-3.11-linux.yml b/src/environment-3.11-linux.yml index 6716e043193..87b1763064d 100644 --- a/src/environment-3.11-linux.yml +++ b/src/environment-3.11-linux.yml @@ -272,6 +272,8 @@ dependencies: - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - maxima=5.47.0=hed6455c_2 - memory-allocator=0.1.3=py311h459d7ec_0 + - meson=1.5.2=pyhd8ed1ab_0 + - meson-python=0.16.0=pyh0c530f3_0 - metis=5.1.0=h59595ed_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 diff --git a/src/environment-3.11-macos.yml b/src/environment-3.11-macos.yml index 5e513cfcd28..0102d88c5fb 100644 --- a/src/environment-3.11-macos.yml +++ b/src/environment-3.11-macos.yml @@ -244,6 +244,8 @@ dependencies: - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - maxima=5.47.0=h2bbcd85_2 - memory-allocator=0.1.3=py311heffc1b2_0 + - meson=1.5.2=pyhd8ed1ab_0 + - meson-python=0.16.0=pyh0c530f3_0 - metis=5.1.0=h13dd4ca_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=h91ba8db_0 @@ -409,141 +411,14 @@ dependencies: - wcwidth=0.2.13=pyhd8ed1ab_0 - webcolors=24.6.0=pyhd8ed1ab_0 - webencodings=0.5.1=pyhd8ed1ab_2 - - websocket-client=1.7.0=pyhd8ed1ab_0 - - wheel=0.42.0=pyhd8ed1ab_0 - - widgetsnbextension=4.0.9=pyhd8ed1ab_0 - - zipp=3.17.0=pyhd8ed1ab_0 - - anyio=4.2.0=pyhd8ed1ab_0 - - asttokens=2.4.1=pyhd8ed1ab_0 - - async-lru=2.0.4=pyhd8ed1ab_0 - - babel=2.14.0=pyhd8ed1ab_0 - - beautifulsoup4=4.12.2=pyha770c72_0 - - beniget=0.4.1=pyhd8ed1ab_0 - - bleach=6.1.0=pyhd8ed1ab_0 - - cached-property=1.5.2=hd8ed1ab_1 - - cctools=973.0.1=hd9ad811_15 - - cffi=1.16.0=py311hc0b63fd_0 - - clang=15.0.7=hac416ee_4 - - cmake=3.28.1=h7c85d92_0 - - comm=0.1.4=pyhd8ed1ab_0 - - cppy=1.2.1=pyhd8ed1ab_0 - - curl=8.5.0=h726d00d_0 - - cypari2=2.1.3=py311h7d823c7_2 - - deprecation=2.1.0=pyh9f0ad1d_0 - - fonttools=4.47.0=py311he705e18_0 - - harfbuzz=8.3.0=hf45c392_0 - - importlib-metadata=7.0.0=pyha770c72_0 - - importlib_resources=6.1.1=pyhd8ed1ab_0 - - jedi=0.19.1=pyhd8ed1ab_0 - - jinja2=3.1.2=pyhd8ed1ab_1 - - jupyter_core=5.5.1=py311h6eed73b_0 - - jupyterlab_pygments=0.3.0=pyhd8ed1ab_0 - - libcblas=3.9.0=20_osx64_openblas - - liblapack=3.9.0=20_osx64_openblas - - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - - memory-allocator=0.1.3=py311h2725bcf_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pip=23.3.2=pyhd8ed1ab_0 - - pplpy=0.8.9=py311h7355a2a_0 - - primecountpy=0.1.0=py311h5fe6e05_4 - - prompt-toolkit=3.0.42=pyha770c72_0 - - pybind11=2.11.1=py311h5fe6e05_2 - - pyobjc-core=10.1=py311h9b70068_0 - - pyproject-api=1.6.1=pyhd8ed1ab_0 - - python-dateutil=2.8.2=pyhd8ed1ab_0 - - pytz-deprecation-shim=0.1.0.post0=py311h6eed73b_4 - - referencing=0.32.0=pyhd8ed1ab_0 - - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - - sympy=1.12=pypyh9d50eac_103 - - terminado=0.18.0=pyh31c8845_0 - - tinycss2=1.2.1=pyhd8ed1ab_0 - - typing-extensions=4.9.0=hd8ed1ab_0 - - urllib3=2.1.0=pyhd8ed1ab_0 - - virtualenv=20.25.0=pyhd8ed1ab_0 - - argon2-cffi-bindings=21.2.0=py311h2725bcf_4 - - arpack=3.8.0=nompi_hb44a6d1_101 - - arrow=1.3.0=pyhd8ed1ab_0 - - clangxx=15.0.7=default_h6b1ee41_4 - - dsdp=5.8=h6e329d1_1203 - - fflas-ffpack=2.4.3=h026fd7e_2 - - fqdn=1.5.1=pyhd8ed1ab_0 - - gsl=2.7=h93259b0_0 - - hatchling=1.21.0=pyhd8ed1ab_0 - - iml=1.0.5=h64b42ca_1003 - - importlib-resources=6.1.1=pyhd8ed1ab_0 - - importlib_metadata=7.0.0=hd8ed1ab_0 - - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - - liblapacke=3.9.0=20_osx64_openblas - - numpy=1.26.2=py311h93c810c_0 - - pango=1.50.14=h19c1c8a_2 - - prompt_toolkit=3.0.42=hd8ed1ab_0 - - pyobjc-framework-cocoa=10.1=py311h9b70068_0 - - requests=2.31.0=pyhd8ed1ab_0 - - setuptools-scm=8.0.4=pyhd8ed1ab_0 - - stack_data=0.6.2=pyhd8ed1ab_0 - - suitesparse=5.10.1=h0a40b7c_2 - - argon2-cffi=23.1.0=pyhd8ed1ab_0 - - blas-devel=3.9.0=20_osx64_openblas - - compiler-rt_osx-64=15.0.7=ha38d28d_2 - - contourpy=1.2.0=py311h7bea37d_0 - - cvxopt=1.3.2=py311ha4c19de_1 - - fpylll=0.6.0=py311hc863427_1 - - giac=1.9.0.21=h92f3f65_1 - - igraph=0.10.8=h29df365_0 - - ipython=8.18.1=pyh707e725_3 - - isoduration=20.11.0=pyhd8ed1ab_0 - - jsonschema=4.20.0=pyhd8ed1ab_0 - - jupyter_client=8.6.0=pyhd8ed1ab_0 - - linbox=1.6.3=hfb9b24e_8 - - scipy=1.11.4=py311he0bea55_0 - - send2trash=1.8.2=pyhd1c38e8_0 - - setuptools_scm=8.0.4=hd8ed1ab_0 - - tox=4.11.4=pyhd8ed1ab_0 - - blas=2.120=openblas - - compiler-rt=15.0.7=ha38d28d_2 - - ipykernel=6.26.0=pyh3cd1d5f_0 - - ipywidgets=8.1.1=pyhd8ed1ab_0 - - jsonschema-with-format-nongpl=4.20.0=pyhd8ed1ab_0 - - matplotlib-base=3.8.2=py311hd316c10_0 - - nbformat=5.9.2=pyhd8ed1ab_0 - - rw=0.9=h10d778d_1 - - clang_impl_osx-64=15.0.7=h03d6864_7 - - ipympl=0.9.3=pyhd8ed1ab_0 - - jupyter-jsmol=2022.1.0=pyhd8ed1ab_0 - - jupyter_events=0.9.0=pyhd8ed1ab_0 - - matplotlib=3.8.2=py311h6eed73b_0 - - nbclient=0.8.0=pyhd8ed1ab_0 - - clang_osx-64=15.0.7=hb91bd55_7 - - nbconvert-core=7.13.0=pyhd8ed1ab_0 - - c-compiler=1.6.0=h63c33a9_0 - - clangxx_impl_osx-64=15.0.7=h2133e9c_7 - - gfortran_osx-64=12.3.0=h18f7dce_1 - - jupyter_server=2.12.1=pyhd8ed1ab_0 - - nbconvert-pandoc=7.13.0=pyhd8ed1ab_0 - - clangxx_osx-64=15.0.7=hb91bd55_7 - - gfortran=12.3.0=h2c809b3_1 - - jupyter-lsp=2.2.1=pyhd8ed1ab_0 - - jupyterlab_server=2.25.2=pyhd8ed1ab_0 - - nbconvert=7.13.0=pyhd8ed1ab_0 - - notebook-shim=0.2.3=pyhd8ed1ab_0 - - cxx-compiler=1.6.0=h1c7c39f_0 - - fortran-compiler=1.6.0=h932d759_0 - - jupyterlab=4.0.9=pyhd8ed1ab_0 - - pythran=0.14.0=py311hd5c4f45_1 - - r-base=4.3.1=h0ff45fa_6 - - compilers=1.6.0=h694c41f_0 - - notebook=7.0.6=pyhd8ed1ab_0 - - rpy2=3.5.11=py311r43h4a70a88_3 - - jupyter_sphinx=0.4.0=py311h6eed73b_1 - - sphinx-basic-ng=1.0.0b2=pyhd8ed1ab_1 - - furo=2023.9.10=pyhd8ed1ab_0 - - sphinx-copybutton=0.5.2=pyhd8ed1ab_0 - - sphinxcontrib-applehelp=1.0.7=pyhd8ed1ab_0 - - sphinxcontrib-devhelp=1.0.5=pyhd8ed1ab_0 - - sphinxcontrib-htmlhelp=2.0.4=pyhd8ed1ab_0 - - sphinxcontrib-qthelp=1.0.6=pyhd8ed1ab_0 - - sphinx=7.2.6=pyhd8ed1ab_0 - - sphinxcontrib-serializinghtml=1.1.9=pyhd8ed1ab_0 - - sphinxcontrib-websupport=1.2.6=pyhd8ed1ab_0 + - websocket-client=1.8.0=pyhd8ed1ab_0 + - wheel=0.43.0=pyhd8ed1ab_1 + - widgetsnbextension=4.0.11=pyhd8ed1ab_0 + - xorg-libxau=1.0.11=hb547adb_0 + - xorg-libxdmcp=1.1.3=h27ca646_0 + - xz=5.2.6=h57fd34a_0 + - yaml=0.2.5=h3422bc3_2 + - zeromq=4.3.5=hcc0f68c_4 + - zipp=3.19.2=pyhd8ed1ab_0 + - zlib=1.3.1=hfb2fe0b_1 + - zstd=1.5.6=hb46c0d2_0 diff --git a/src/environment-3.9-linux.yml b/src/environment-3.9-linux.yml index 85a02b25938..723f0663ecb 100644 --- a/src/environment-3.9-linux.yml +++ b/src/environment-3.9-linux.yml @@ -272,6 +272,8 @@ dependencies: - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - maxima=5.47.0=hed6455c_2 - memory-allocator=0.1.3=py39hd1e30aa_0 + - meson=1.5.2=pyhd8ed1ab_0 + - meson-python=0.16.0=pyh0c530f3_0 - metis=5.1.0=h59595ed_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 @@ -469,88 +471,6 @@ dependencies: - xorg-libxi=1.7.10=h7f98852_0 - xorg-libxrender=0.9.11=hd590300_0 - xorg-libxt=1.3.0=hd590300_1 - - zipp=3.17.0=pyhd8ed1ab_0 - - anyio=4.2.0=pyhd8ed1ab_0 - - asttokens=2.4.1=pyhd8ed1ab_0 - - async-lru=2.0.4=pyhd8ed1ab_0 - - babel=2.14.0=pyhd8ed1ab_0 - - beautifulsoup4=4.12.2=pyha770c72_0 - - beniget=0.4.1=pyhd8ed1ab_0 - - bleach=6.1.0=pyhd8ed1ab_0 - - boost-cpp=1.84.0=h44aadfe_0 - - brial=1.2.12=pyh694c41f_1 - - cached-property=1.5.2=hd8ed1ab_1 - - cairo=1.18.0=h3faef2a_0 - - cffi=1.16.0=py39h7a31438_0 - - cmake=3.28.1=hcfe8598_0 - - comm=0.1.4=pyhd8ed1ab_0 - - cppy=1.2.1=pyhd8ed1ab_0 - - curl=8.5.0=hca28451_0 - - cxx-compiler=1.6.0=h00ab1b0_0 - - cypari2=2.1.3=py39h1698a45_2 - - deprecation=2.1.0=pyh9f0ad1d_0 - - fonttools=4.47.0=py39hd1e30aa_0 - - fortran-compiler=1.6.0=heb67821_0 - - glib=2.78.3=hfc55251_0 - - importlib-metadata=7.0.0=pyha770c72_0 - - importlib_resources=6.1.1=pyhd8ed1ab_0 - - jedi=0.19.1=pyhd8ed1ab_0 - - jinja2=3.1.2=pyhd8ed1ab_1 - - jupyter_core=5.5.1=py39hf3d152e_0 - - jupyterlab_pygments=0.3.0=pyhd8ed1ab_0 - - libcblas=3.9.0=20_linux64_openblas - - libclang=15.0.7=default_hb11cfb5_4 - - libgd=2.3.3=h119a65a_9 - - liblapack=3.9.0=20_linux64_openblas - - libxkbcommon=1.6.0=h5d7e998_0 - - matplotlib-inline=0.1.6=pyhd8ed1ab_0 - - memory-allocator=0.1.3=py39hd1e30aa_0 - - overrides=7.4.0=pyhd8ed1ab_0 - - pexpect=4.8.0=pyh1a96a4e_2 - - pillow=10.1.0=py39had0adad_0 - - pip=23.3.2=pyhd8ed1ab_0 - - pplpy=0.8.9=py39hba3e9e5_0 - - primecountpy=0.1.0=py39h7633fee_4 - - prompt-toolkit=3.0.42=pyha770c72_0 - - pulseaudio-client=16.1=hb77b528_5 - - pybind11=2.11.1=py39h7633fee_2 - - pyproject-api=1.6.1=pyhd8ed1ab_0 - - python-dateutil=2.8.2=pyhd8ed1ab_0 - - pytz-deprecation-shim=0.1.0.post0=py39hf3d152e_4 - - referencing=0.32.0=pyhd8ed1ab_0 - - rfc3339-validator=0.1.4=pyhd8ed1ab_0 - - sip=6.7.12=py39h3d6467e_0 - - sympy=1.12=pypyh9d50eac_103 - - terminado=0.18.0=pyh0d859eb_0 - - tinycss2=1.2.1=pyhd8ed1ab_0 - - typing-extensions=4.9.0=hd8ed1ab_0 - - urllib3=2.1.0=pyhd8ed1ab_0 - - virtualenv=20.25.0=pyhd8ed1ab_0 - - xorg-libxi=1.7.10=h7f98852_0 - - argon2-cffi-bindings=21.2.0=py39hd1e30aa_4 - - arpack=3.8.0=nompi_h0baa96a_101 - - arrow=1.3.0=pyhd8ed1ab_0 - - compilers=1.6.0=ha770c72_0 - - dsdp=5.8=hd9d9efa_1203 - - fflas-ffpack=2.4.3=h912ac81_2 - - fqdn=1.5.1=pyhd8ed1ab_0 - - gsl=2.7=he838d99_0 - - gstreamer=1.22.8=h98fc4e7_0 - - harfbuzz=8.3.0=h3d44ed6_0 - - hatchling=1.21.0=pyhd8ed1ab_0 - - iml=1.0.5=hd75c201_1003 - - importlib-resources=6.1.1=pyhd8ed1ab_0 - - importlib_metadata=7.0.0=hd8ed1ab_0 - - jsonschema-specifications=2023.11.2=pyhd8ed1ab_0 - - jupyter_server_terminals=0.5.0=pyhd8ed1ab_0 - - liblapacke=3.9.0=20_linux64_openblas - - numpy=1.26.2=py39h474f0d3_0 - - prompt_toolkit=3.0.42=hd8ed1ab_0 - - pyqt5-sip=12.12.2=py39h3d6467e_5 - - requests=2.31.0=pyhd8ed1ab_0 - - setuptools-scm=8.0.4=pyhd8ed1ab_0 - - stack_data=0.6.2=pyhd8ed1ab_0 - - suitesparse=5.10.1=h3ec001c_2 - xorg-libxtst=1.2.3=h7f98852_1002 - xorg-recordproto=1.14.2=h7f98852_1002 - xorg-renderproto=0.11.1=h7f98852_1002 diff --git a/src/environment-3.9-macos.yml b/src/environment-3.9-macos.yml index 5137c9298af..ab2412b2041 100644 --- a/src/environment-3.9-macos.yml +++ b/src/environment-3.9-macos.yml @@ -244,6 +244,8 @@ dependencies: - matplotlib-inline=0.1.7=pyhd8ed1ab_0 - maxima=5.47.0=h2bbcd85_2 - memory-allocator=0.1.3=py39h0f82c59_0 + - meson=1.5.2=pyhd8ed1ab_0 + - meson-python=0.16.0=pyh0c530f3_0 - metis=5.1.0=h13dd4ca_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=h91ba8db_0 From a8f321b36f005778d6a0149386c5aeed022bc73f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 17:14:35 +0000 Subject: [PATCH 168/229] fix tests --- src/sage/misc/cython.py | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/src/sage/misc/cython.py b/src/sage/misc/cython.py index 9fa8c8e38f7..95491a5c623 100644 --- a/src/sage/misc/cython.py +++ b/src/sage/misc/cython.py @@ -227,13 +227,16 @@ def cython(filename, verbose=0, compile_message=False, ....: ''') In Cython 0.29.33 using `from PACKAGE cimport MODULE` is broken - when `PACKAGE` is a namespace package, see :trac:`35322` - (but as of now sage.misc is not a namespace package, so this passes):: + when `PACKAGE` is a namespace package, see :issue:`35322`:: sage: cython(''' ....: from sage.misc cimport cachefunc ....: ''') - + Traceback (most recent call last): + ... + RuntimeError: Error compiling Cython file: + ... + ...: 'sage/misc.pxd' not found """ if not filename.endswith('pyx'): print("Warning: file (={}) should have extension .pyx".format(filename), file=sys.stderr) From 01c801f38942b5e177c68d0ab294a6c17ae1e330 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 18:01:13 +0000 Subject: [PATCH 169/229] fix macos ci --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 8394508c64d..cba0186568e 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -55,7 +55,7 @@ jobs: channels: conda-forge channel-priority: true activate-environment: sage - environment-file: src/environment-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && 'macos' || 'linux' }}.yml + environment-file: src/${{ matrix.conda-env }}-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && (startsWith(runner.arch, 'ARM') && 'macos' || 'macos-x86_64') || 'linux' }}.yml - name: Print Conda environment shell: bash -l {0} From 81dc33dd995f1847ed947452bb35d762b6b6936a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 18:01:27 +0000 Subject: [PATCH 170/229] downgrade meson-python --- src/environment-3.10-linux.yml | 2 +- src/environment-3.10-macos.yml | 2 +- src/environment-3.11-linux.yml | 2 +- src/environment-3.11-macos.yml | 2 +- src/environment-3.9-linux.yml | 2 +- src/environment-3.9-macos.yml | 2 +- 6 files changed, 6 insertions(+), 6 deletions(-) diff --git a/src/environment-3.10-linux.yml b/src/environment-3.10-linux.yml index 5d14a3c9a42..929b40139c5 100644 --- a/src/environment-3.10-linux.yml +++ b/src/environment-3.10-linux.yml @@ -273,7 +273,7 @@ dependencies: - maxima=5.47.0=hed6455c_2 - memory-allocator=0.1.3=py310h2372a71_0 - meson=1.5.2=pyhd8ed1ab_0 - - meson-python=0.16.0=pyh0c530f3_0 + - meson-python=0.15.0=pyh0c530f3_0 - metis=5.1.0=h59595ed_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 diff --git a/src/environment-3.10-macos.yml b/src/environment-3.10-macos.yml index e80f93d4a62..87692b1e2ee 100644 --- a/src/environment-3.10-macos.yml +++ b/src/environment-3.10-macos.yml @@ -245,7 +245,7 @@ dependencies: - maxima=5.47.0=h2bbcd85_2 - memory-allocator=0.1.3=py310h2aa6e3c_0 - meson=1.5.2=pyhd8ed1ab_0 - - meson-python=0.16.0=pyh0c530f3_0 + - meson-python=0.15.0=pyh0c530f3_0 - metis=5.1.0=h13dd4ca_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=h91ba8db_0 diff --git a/src/environment-3.11-linux.yml b/src/environment-3.11-linux.yml index 87b1763064d..7fee7689a28 100644 --- a/src/environment-3.11-linux.yml +++ b/src/environment-3.11-linux.yml @@ -273,7 +273,7 @@ dependencies: - maxima=5.47.0=hed6455c_2 - memory-allocator=0.1.3=py311h459d7ec_0 - meson=1.5.2=pyhd8ed1ab_0 - - meson-python=0.16.0=pyh0c530f3_0 + - meson-python=0.15.0=pyh0c530f3_0 - metis=5.1.0=h59595ed_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 diff --git a/src/environment-3.11-macos.yml b/src/environment-3.11-macos.yml index 0102d88c5fb..4111aa010f2 100644 --- a/src/environment-3.11-macos.yml +++ b/src/environment-3.11-macos.yml @@ -245,7 +245,7 @@ dependencies: - maxima=5.47.0=h2bbcd85_2 - memory-allocator=0.1.3=py311heffc1b2_0 - meson=1.5.2=pyhd8ed1ab_0 - - meson-python=0.16.0=pyh0c530f3_0 + - meson-python=0.15.0=pyh0c530f3_0 - metis=5.1.0=h13dd4ca_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=h91ba8db_0 diff --git a/src/environment-3.9-linux.yml b/src/environment-3.9-linux.yml index 723f0663ecb..83a922eb4f4 100644 --- a/src/environment-3.9-linux.yml +++ b/src/environment-3.9-linux.yml @@ -273,7 +273,7 @@ dependencies: - maxima=5.47.0=hed6455c_2 - memory-allocator=0.1.3=py39hd1e30aa_0 - meson=1.5.2=pyhd8ed1ab_0 - - meson-python=0.16.0=pyh0c530f3_0 + - meson-python=0.15.0=pyh0c530f3_0 - metis=5.1.0=h59595ed_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=hfe3b2da_0 diff --git a/src/environment-3.9-macos.yml b/src/environment-3.9-macos.yml index ab2412b2041..906b3b79f22 100644 --- a/src/environment-3.9-macos.yml +++ b/src/environment-3.9-macos.yml @@ -245,7 +245,7 @@ dependencies: - maxima=5.47.0=h2bbcd85_2 - memory-allocator=0.1.3=py39h0f82c59_0 - meson=1.5.2=pyhd8ed1ab_0 - - meson-python=0.16.0=pyh0c530f3_0 + - meson-python=0.15.0=pyh0c530f3_0 - metis=5.1.0=h13dd4ca_1007 - mistune=3.0.2=pyhd8ed1ab_0 - mpc=1.3.1=h91ba8db_0 From 3ff0f366b6da1fddade19656636f4b824de1bc91 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 27 Sep 2024 23:41:17 +0000 Subject: [PATCH 171/229] fix ci --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index cba0186568e..77e3ba1f244 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -55,7 +55,7 @@ jobs: channels: conda-forge channel-priority: true activate-environment: sage - environment-file: src/${{ matrix.conda-env }}-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && (startsWith(runner.arch, 'ARM') && 'macos' || 'macos-x86_64') || 'linux' }}.yml + environment-file: src/environment-${{ matrix.python }}-${{ startsWith(matrix.os, 'macos') && (startsWith(runner.arch, 'ARM') && 'macos' || 'macos-x86_64') || 'linux' }}.yml - name: Print Conda environment shell: bash -l {0} From 366987c9327d55617cafbff010ea65750788e524 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 00:23:14 +0000 Subject: [PATCH 172/229] fix jinja error --- src/sage/ext/interpreters/meson.build | 5 ++--- src/sage_setup/autogen/__init__.py | 2 +- src/sage_setup/autogen/interpreters/__main__.py | 3 ++- .../autogen/interpreters/{ => internal}/__init__.py | 12 +++++++++--- .../autogen/interpreters/{ => internal}/generator.py | 0 .../interpreters/{ => internal}/instructions.py | 0 .../autogen/interpreters/{ => internal}/memory.py | 0 .../interpreters/{ => internal}/specs/__init__.py | 0 .../interpreters/{ => internal}/specs/base.py | 0 .../autogen/interpreters/{ => internal}/specs/cc.py | 0 .../autogen/interpreters/{ => internal}/specs/cdf.py | 0 .../interpreters/{ => internal}/specs/element.py | 0 .../interpreters/{ => internal}/specs/python.py | 0 .../autogen/interpreters/{ => internal}/specs/rdf.py | 0 .../autogen/interpreters/{ => internal}/specs/rr.py | 0 .../autogen/interpreters/{ => internal}/storage.py | 0 .../autogen/interpreters/{ => internal}/utils.py | 0 17 files changed, 14 insertions(+), 8 deletions(-) mode change 100644 => 100755 src/sage_setup/autogen/interpreters/__main__.py rename src/sage_setup/autogen/interpreters/{ => internal}/__init__.py (97%) rename src/sage_setup/autogen/interpreters/{ => internal}/generator.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/instructions.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/memory.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/__init__.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/base.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/cc.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/cdf.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/element.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/python.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/rdf.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/specs/rr.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/storage.py (100%) rename src/sage_setup/autogen/interpreters/{ => internal}/utils.py (100%) diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index 98cf121deb2..f2f18b3842f 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -17,9 +17,8 @@ interpreters = custom_target( 'wrapper_rr.pyx', '__init__.py', ], - input: '../../../sage_setup/autogen/interpreters/__init__.py', - command: [py, '-m', 'sage_setup.autogen.interpreters', '@OUTDIR@'], - env: ['PYTHONPATH=' + meson.current_source_dir() / '..' / '..' / '..'], + input: '../../../sage_setup/autogen/interpreters/internal/__init__.py', + command: ['../../../sage_setup/autogen/interpreters/__main__.py', '@OUTDIR@'], # Manually install the generated files instead of using install_sources # this is a workaround for https://github.com/mesonbuild/meson/issues/7372 install: true, diff --git a/src/sage_setup/autogen/__init__.py b/src/sage_setup/autogen/__init__.py index 380983c06c7..63cdc68ce59 100644 --- a/src/sage_setup/autogen/__init__.py +++ b/src/sage_setup/autogen/__init__.py @@ -1,6 +1,6 @@ import os -from . import interpreters +from .interpreters.internal import interpreters def autogen_all(): diff --git a/src/sage_setup/autogen/interpreters/__main__.py b/src/sage_setup/autogen/interpreters/__main__.py old mode 100644 new mode 100755 index 398a7b30039..3649565e7a0 --- a/src/sage_setup/autogen/interpreters/__main__.py +++ b/src/sage_setup/autogen/interpreters/__main__.py @@ -1,8 +1,9 @@ +#!/usr/bin/env python3 # Usage: python -m sage_setup.autogen.interpreters import argparse -from . import rebuild +from internal import rebuild parser = argparse.ArgumentParser() parser.add_argument("output_dir", help="Output directory") diff --git a/src/sage_setup/autogen/interpreters/__init__.py b/src/sage_setup/autogen/interpreters/internal/__init__.py similarity index 97% rename from src/sage_setup/autogen/interpreters/__init__.py rename to src/sage_setup/autogen/interpreters/internal/__init__.py index dd491972d91..35db11994c8 100644 --- a/src/sage_setup/autogen/interpreters/__init__.py +++ b/src/sage_setup/autogen/interpreters/internal/__init__.py @@ -210,9 +210,15 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): from importlib import import_module - _INTERPRETERS = [getattr(import_module('sage_setup.autogen.interpreters.specs.' + interpreter.lower()), - interpreter + 'Interpreter') - for interpreter in interpreters] + _INTERPRETERS = [ + getattr( + import_module( + ".specs." + interpreter.lower(), package=__name__.rsplit(".", 1)[0] + ), + interpreter + "Interpreter", + ) + for interpreter in interpreters + ] if distribution is None: all_py = 'all.py' diff --git a/src/sage_setup/autogen/interpreters/generator.py b/src/sage_setup/autogen/interpreters/internal/generator.py similarity index 100% rename from src/sage_setup/autogen/interpreters/generator.py rename to src/sage_setup/autogen/interpreters/internal/generator.py diff --git a/src/sage_setup/autogen/interpreters/instructions.py b/src/sage_setup/autogen/interpreters/internal/instructions.py similarity index 100% rename from src/sage_setup/autogen/interpreters/instructions.py rename to src/sage_setup/autogen/interpreters/internal/instructions.py diff --git a/src/sage_setup/autogen/interpreters/memory.py b/src/sage_setup/autogen/interpreters/internal/memory.py similarity index 100% rename from src/sage_setup/autogen/interpreters/memory.py rename to src/sage_setup/autogen/interpreters/internal/memory.py diff --git a/src/sage_setup/autogen/interpreters/specs/__init__.py b/src/sage_setup/autogen/interpreters/internal/specs/__init__.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/__init__.py rename to src/sage_setup/autogen/interpreters/internal/specs/__init__.py diff --git a/src/sage_setup/autogen/interpreters/specs/base.py b/src/sage_setup/autogen/interpreters/internal/specs/base.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/base.py rename to src/sage_setup/autogen/interpreters/internal/specs/base.py diff --git a/src/sage_setup/autogen/interpreters/specs/cc.py b/src/sage_setup/autogen/interpreters/internal/specs/cc.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/cc.py rename to src/sage_setup/autogen/interpreters/internal/specs/cc.py diff --git a/src/sage_setup/autogen/interpreters/specs/cdf.py b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/cdf.py rename to src/sage_setup/autogen/interpreters/internal/specs/cdf.py diff --git a/src/sage_setup/autogen/interpreters/specs/element.py b/src/sage_setup/autogen/interpreters/internal/specs/element.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/element.py rename to src/sage_setup/autogen/interpreters/internal/specs/element.py diff --git a/src/sage_setup/autogen/interpreters/specs/python.py b/src/sage_setup/autogen/interpreters/internal/specs/python.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/python.py rename to src/sage_setup/autogen/interpreters/internal/specs/python.py diff --git a/src/sage_setup/autogen/interpreters/specs/rdf.py b/src/sage_setup/autogen/interpreters/internal/specs/rdf.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/rdf.py rename to src/sage_setup/autogen/interpreters/internal/specs/rdf.py diff --git a/src/sage_setup/autogen/interpreters/specs/rr.py b/src/sage_setup/autogen/interpreters/internal/specs/rr.py similarity index 100% rename from src/sage_setup/autogen/interpreters/specs/rr.py rename to src/sage_setup/autogen/interpreters/internal/specs/rr.py diff --git a/src/sage_setup/autogen/interpreters/storage.py b/src/sage_setup/autogen/interpreters/internal/storage.py similarity index 100% rename from src/sage_setup/autogen/interpreters/storage.py rename to src/sage_setup/autogen/interpreters/internal/storage.py diff --git a/src/sage_setup/autogen/interpreters/utils.py b/src/sage_setup/autogen/interpreters/internal/utils.py similarity index 100% rename from src/sage_setup/autogen/interpreters/utils.py rename to src/sage_setup/autogen/interpreters/internal/utils.py From 587ed3bdea92522445618eb072e8562e88e3cb60 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 00:23:37 +0000 Subject: [PATCH 173/229] ignore build dir --- .gitignore | 2 ++ 1 file changed, 2 insertions(+) diff --git a/.gitignore b/.gitignore index 2a5d909b53a..ce00e9a6f18 100644 --- a/.gitignore +++ b/.gitignore @@ -305,6 +305,8 @@ worktree* builddir builddir-* build-install +build/cp311 + # Meson temporary files src/sage/interfaces/__init__.py src/sage/crypto/block_cipher/__init__.py From ed1028954057a112611558700a52dd4521268bba Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 00:24:18 +0000 Subject: [PATCH 174/229] clarify build isolation --- src/doc/en/installation/meson.rst | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index d48e9403231..f158551c732 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -33,8 +33,13 @@ To compile and install the project in editable install, just use:: pip install --no-build-isolation --editable . ``` -This will install Sage in the current Python environment. You can then start -Sage from the command line with ``./sage`` or run the tests with ``./sage -t``. +This will install Sage in the current Python environment. +In a Conda environment, the ̀ `--no-build-isolation` flag is necessary to +allow the build system to reuse the already installed build dependencies. +If you don't use Conda, you can omit this flag. + +You can then start Sage from the command line with ``./sage`` +or run the tests with ``./sage -t``. .. NOTE:: From 8e340755ea269d86b6dc74cc4fbd6e1184cb4028 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 00:33:07 +0000 Subject: [PATCH 175/229] fix import --- src/sage_setup/autogen/__init__.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/sage_setup/autogen/__init__.py b/src/sage_setup/autogen/__init__.py index 63cdc68ce59..cde2037fdd3 100644 --- a/src/sage_setup/autogen/__init__.py +++ b/src/sage_setup/autogen/__init__.py @@ -1,6 +1,6 @@ import os -from .interpreters.internal import interpreters +from .interpreters.internal import rebuild def autogen_all(): @@ -11,6 +11,6 @@ def autogen_all(): of packages built/installed by setup.py. """ from sage.env import SAGE_SRC - interpreters.rebuild(os.path.join(SAGE_SRC, "sage", "ext", "interpreters")) + rebuild(os.path.join(SAGE_SRC, "sage", "ext", "interpreters")) return ['sage.ext.interpreters'] From 734e0fe24b26c0acbf1bc801adafe428aef4907a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 00:34:04 +0000 Subject: [PATCH 176/229] run build only on linux for now --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 77e3ba1f244..03754b041a7 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -22,7 +22,7 @@ jobs: strategy: fail-fast: false matrix: - os: [ubuntu, macos] + os: [ubuntu] python: ['3.9', '3.10', '3.11'] steps: From fd13fd40b7baf222d07c1e42e38055b53f72dc5e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 00:49:42 +0000 Subject: [PATCH 177/229] remove non-existing pynac dir --- src/sage/libs/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 6880020a951..256d1cba075 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -86,6 +86,5 @@ subdir('mpmath') install_subdir('mwrank', install_dir: sage_install_dir / 'libs') subdir('ntl') subdir('pari') -install_subdir('pynac', install_dir: sage_install_dir / 'libs') subdir('singular') subdir('symmetrica') From c942abedf56c77c30049eacfb731caf9af476ffe Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 01:01:04 +0000 Subject: [PATCH 178/229] try to fix import --- src/sage_setup/autogen/interpreters/internal/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage_setup/autogen/interpreters/internal/__init__.py b/src/sage_setup/autogen/interpreters/internal/__init__.py index 35db11994c8..b18cf1c84e6 100644 --- a/src/sage_setup/autogen/interpreters/internal/__init__.py +++ b/src/sage_setup/autogen/interpreters/internal/__init__.py @@ -213,7 +213,7 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): _INTERPRETERS = [ getattr( import_module( - ".specs." + interpreter.lower(), package=__name__.rsplit(".", 1)[0] + ".specs." + interpreter.lower(), package=__name__ ), interpreter + "Interpreter", ) From ca168d801f9167330e31b37b39b890ed1e729026 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 01:09:43 +0000 Subject: [PATCH 179/229] fix sage.all import --- src/sage/crypto/meson.build | 1 + src/sage/graphs/base/meson.build | 2 +- src/sage/modular/meson.build | 1 + 3 files changed, 3 insertions(+), 1 deletion(-) diff --git a/src/sage/crypto/meson.build b/src/sage/crypto/meson.build index eb3eea7a294..de6bf158f16 100644 --- a/src/sage/crypto/meson.build +++ b/src/sage/crypto/meson.build @@ -32,5 +32,6 @@ foreach name, pyx : extension_data endforeach install_subdir('block_cipher', install_dir: sage_install_dir / 'crypto') +install_subdir('key_exchange', install_dir: sage_install_dir / 'crypto') install_subdir('mq', install_dir: sage_install_dir / 'crypto') install_subdir('public_key', install_dir: sage_install_dir / 'crypto') diff --git a/src/sage/graphs/base/meson.build b/src/sage/graphs/base/meson.build index 5a3848c0d4a..92e205ceb81 100644 --- a/src/sage/graphs/base/meson.build +++ b/src/sage/graphs/base/meson.build @@ -34,7 +34,7 @@ endforeach extension_data_cpp = { 'boost_graph': files('boost_graph.pyx'), 'c_graph': files('c_graph.pyx'), - # 'static_sparse_graph': files('static_sparse_graph.pyx'), # fails + 'static_sparse_graph': files('static_sparse_graph.pyx'), } foreach name, pyx : extension_data_cpp diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build index c65cca8fb89..3c8a5e7059c 100644 --- a/src/sage/modular/meson.build +++ b/src/sage/modular/meson.build @@ -30,6 +30,7 @@ endforeach install_subdir('abvar', install_dir: sage_install_dir / 'modular') subdir('arithgroup') install_subdir('btquotients', install_dir: sage_install_dir / 'modular') +install_subdir('drinfeld_modform', install_dir: sage_install_dir / 'modular') install_subdir('hecke', install_dir: sage_install_dir / 'modular') install_subdir('local_comp', install_dir: sage_install_dir / 'modular') subdir('modform') From bf97775eb211c388aa1230479b4351011f37425c Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 02:13:01 +0000 Subject: [PATCH 180/229] fix tests --- meson.build | 1 + src/sage/ext/fast_callable.pyx | 8 ++++---- src/sage/meson.build | 2 ++ 3 files changed, 7 insertions(+), 4 deletions(-) diff --git a/meson.build b/meson.build index 8e4a30401bf..875d51bbe54 100644 --- a/meson.build +++ b/meson.build @@ -125,6 +125,7 @@ file_paths = [ 'src/sage/lfunctions/__init__.py', 'src/sage/arith/__init__.py', 'src/sage/ext/__init__.py', + 'src/sage/ext/interpreters/__init__.py', 'src/sage/categories/examples/__init__.py', 'src/sage/categories/__init__.py', 'src/sage/modules/fg_pid/__init__.py', diff --git a/src/sage/ext/fast_callable.pyx b/src/sage/ext/fast_callable.pyx index c7b4664ff1a..89c34b1f0fc 100644 --- a/src/sage/ext/fast_callable.pyx +++ b/src/sage/ext/fast_callable.pyx @@ -512,10 +512,10 @@ def _builder_and_stream(vars, domain): sage: from sage.ext.fast_callable import _builder_and_stream sage: _builder_and_stream(["x", "y"], ZZ) - (, + (, ) sage: _builder_and_stream(["x", "y"], RR) # needs sage.rings.real_mpfr - (, + (, ) Modularized test with sagemath-categories after :issue:`35095`, which has @@ -526,7 +526,7 @@ def _builder_and_stream(vars, domain): sage: domain = RDF sage: from sage.structure.element import Element as domain sage: _builder_and_stream(["x", "y"], domain) - (, + (, ) """ if isinstance(domain, sage.rings.abc.RealField): @@ -1804,7 +1804,7 @@ cpdef generate_code(Expression expr, InstructionStream stream): sage: instr_stream.instr('return') sage: v = Wrapper_py(instr_stream.get_current()) sage: type(v) - + sage: v(7) 8*pi + 56 diff --git a/src/sage/meson.build b/src/sage/meson.build index 88725b44dcc..57ca72f7b91 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -52,6 +52,8 @@ if gap_exe.found() gap_root_paths = '${prefix}/lib/gap;${prefix}/share/gap;' + gaprun.stdout().strip() endif conf_data.set('GAP_ROOT_PATHS', gap_root_paths) +ecm_bin = find_program(['ecm', 'gmp-ecm'], required: true) +conf_data.set('SAGE_ECMBIN', ecm_bin.full_path()) config_file = configure_file( input: '../../pkgs/sage-conf_conda/_sage_conf/_conf.py.in', From 45e8af61138c83a53e80a18952fc46c1fee3be14 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 02:23:00 +0000 Subject: [PATCH 181/229] fix autogen iterpreters path --- pkgs/sage-setup/pyproject.toml | 2 +- .../autogen/interpreters/internal/__init__.py | 2 +- .../interpreters/internal/generator.py | 30 +++++++++---------- .../interpreters/internal/instructions.py | 20 ++++++------- .../autogen/interpreters/internal/memory.py | 2 +- .../interpreters/internal/specs/base.py | 12 ++++---- .../autogen/interpreters/internal/specs/cc.py | 12 ++++---- .../interpreters/internal/specs/cdf.py | 2 +- .../interpreters/internal/specs/element.py | 6 ++-- .../interpreters/internal/specs/python.py | 20 ++++++------- .../interpreters/internal/specs/rdf.py | 2 +- .../autogen/interpreters/internal/specs/rr.py | 12 ++++---- 12 files changed, 61 insertions(+), 61 deletions(-) diff --git a/pkgs/sage-setup/pyproject.toml b/pkgs/sage-setup/pyproject.toml index 96b079cec62..3744f5ce5ac 100644 --- a/pkgs/sage-setup/pyproject.toml +++ b/pkgs/sage-setup/pyproject.toml @@ -39,7 +39,7 @@ packages = [ "sage_setup", "sage_setup.autogen", "sage_setup.autogen.interpreters", - "sage_setup.autogen.interpreters.specs", + "sage_setup.autogen.interpreters.internal.specs", "sage_setup.command", ] include-package-data = false diff --git a/src/sage_setup/autogen/interpreters/internal/__init__.py b/src/sage_setup/autogen/interpreters/internal/__init__.py index b18cf1c84e6..879ea6c4f34 100644 --- a/src/sage_setup/autogen/interpreters/internal/__init__.py +++ b/src/sage_setup/autogen/interpreters/internal/__init__.py @@ -140,7 +140,7 @@ def build_interp(interp_spec, dir): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: testdir = tmp_dir() sage: rdf_interp = RDFInterpreter() sage: build_interp(rdf_interp, testdir) diff --git a/src/sage_setup/autogen/interpreters/internal/generator.py b/src/sage_setup/autogen/interpreters/internal/generator.py index 33877422a8c..18e594a761a 100644 --- a/src/sage_setup/autogen/interpreters/internal/generator.py +++ b/src/sage_setup/autogen/interpreters/internal/generator.py @@ -43,7 +43,7 @@ def __init__(self, spec): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) sage: gen._spec is interp @@ -73,7 +73,7 @@ def gen_code(self, instr_desc, write): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) sage: from io import StringIO @@ -220,7 +220,7 @@ def func_header(self, cython=False): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.element import ElementInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter sage: interp = ElementInterpreter() sage: gen = InterpreterGenerator(interp) sage: print(gen.func_header()) @@ -263,7 +263,7 @@ def write_interpreter(self, write): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) sage: from io import StringIO @@ -311,7 +311,7 @@ def write_wrapper(self, write): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) sage: from io import StringIO @@ -481,7 +481,7 @@ def write_pxd(self, write): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) sage: from io import StringIO @@ -533,9 +533,9 @@ def get_interpreter(self): First we get the InterpreterSpec for several interpreters:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter - sage: from sage_setup.autogen.interpreters.specs.element import ElementInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter sage: rdf_spec = RDFInterpreter() sage: rr_spec = RRInterpreter() sage: el_spec = ElementInterpreter() @@ -658,9 +658,9 @@ def get_wrapper(self): First we get the InterpreterSpec for several interpreters:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter - sage: from sage_setup.autogen.interpreters.specs.element import ElementInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter sage: rdf_spec = RDFInterpreter() sage: rr_spec = RRInterpreter() sage: el_spec = ElementInterpreter() @@ -984,9 +984,9 @@ def get_pxd(self): First we get the InterpreterSpec for several interpreters:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter - sage: from sage_setup.autogen.interpreters.specs.element import ElementInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter sage: rdf_spec = RDFInterpreter() sage: rr_spec = RRInterpreter() sage: el_spec = ElementInterpreter() diff --git a/src/sage_setup/autogen/interpreters/internal/instructions.py b/src/sage_setup/autogen/interpreters/internal/instructions.py index 116f598197c..b73eec031d2 100644 --- a/src/sage_setup/autogen/interpreters/internal/instructions.py +++ b/src/sage_setup/autogen/interpreters/internal/instructions.py @@ -187,7 +187,7 @@ class InstrSpec(object): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: InstrSpec('add', pg('SS','S'), code='o0 = i0+i1;') add: SS->S = 'o0 = i0+i1;' @@ -214,7 +214,7 @@ def __init__(self, name, io, code=None, uses_error_handler=False, EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: InstrSpec('add', pg('SS','S'), code='o0 = i0+i1;') add: SS->S = 'o0 = i0+i1;' @@ -289,7 +289,7 @@ def __repr__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: InstrSpec('add', pg('SS','S'), code='o0 = i0+i1;') add: SS->S = 'o0 = i0+i1;' @@ -312,7 +312,7 @@ def instr_infix(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: instr_infix('mul', pg('SS', 'S'), '*') mul: SS->S = 'o0 = i0 * i1;' @@ -328,7 +328,7 @@ def instr_funcall_2args(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: instr_funcall_2args('atan2', pg('SS', 'S'), 'atan2') atan2: SS->S = 'o0 = atan2(i0, i1);' @@ -344,7 +344,7 @@ def instr_unary(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: instr_unary('sin', pg('S','S'), 'sin(i0)') sin: S->S = 'o0 = sin(i0);' @@ -362,7 +362,7 @@ def instr_funcall_2args_mpfr(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: pg = RRInterpreter().pg sage: instr_funcall_2args_mpfr('add', pg('SS','S'), 'mpfr_add') add: SS->S = 'mpfr_add(o0, i0, i1, MPFR_RNDN);' @@ -378,7 +378,7 @@ def instr_funcall_1arg_mpfr(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: pg = RRInterpreter().pg sage: instr_funcall_1arg_mpfr('exp', pg('S','S'), 'mpfr_exp') exp: S->S = 'mpfr_exp(o0, i0, MPFR_RNDN);' @@ -393,7 +393,7 @@ def instr_funcall_2args_mpc(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import CCInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.cc import CCInterpreter sage: pg = CCInterpreter().pg sage: instr_funcall_2args_mpc('add', pg('SS','S'), 'mpc_add') add: SS->S = 'mpc_add(o0, i0, i1, MPC_RNDNN);' @@ -408,7 +408,7 @@ def instr_funcall_1arg_mpc(name, io, op): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import CCInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.cc import CCInterpreter sage: pg = CCInterpreter().pg sage: instr_funcall_1arg_mpc('exp', pg('S','S'), 'mpc_exp') exp: S->S = 'mpc_exp(o0, i0, MPC_RNDNN);' diff --git a/src/sage_setup/autogen/interpreters/internal/memory.py b/src/sage_setup/autogen/interpreters/internal/memory.py index e719f47d77a..575d3867295 100644 --- a/src/sage_setup/autogen/interpreters/internal/memory.py +++ b/src/sage_setup/autogen/interpreters/internal/memory.py @@ -172,7 +172,7 @@ class using this memory chunk, to allocate local variables. EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_call_locals() ' cdef RealNumber retval = (self.domain)()\n' diff --git a/src/sage_setup/autogen/interpreters/internal/specs/base.py b/src/sage_setup/autogen/interpreters/internal/specs/base.py index c311c76fb04..ee32cdc8020 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/base.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/base.py @@ -49,8 +49,8 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: interp = RDFInterpreter() sage: interp.c_header '#include ' @@ -86,7 +86,7 @@ def _set_opcodes(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: interp.instr_descs[5].opcode 5 @@ -131,9 +131,9 @@ def __init__(self, type, mc_retval=None): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import RDFInterpreter - sage: from sage_setup.autogen.interpreters.specs.rr import RRInterpreter - sage: from sage_setup.autogen.interpreters.specs.element import ElementInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter + sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter sage: rdf = RDFInterpreter() sage: rr = RRInterpreter() sage: el = ElementInterpreter() diff --git a/src/sage_setup/autogen/interpreters/internal/specs/cc.py b/src/sage_setup/autogen/interpreters/internal/specs/cc.py index e16252b0b79..bdb545da7d8 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/cc.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/cc.py @@ -31,7 +31,7 @@ def declare_class_members(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import * + sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.declare_class_members() '' @@ -46,7 +46,7 @@ class using this memory chunk, to allocate local variables. EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import * + sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.declare_call_locals() ' cdef ComplexNumber retval = (self.domain_element._new())\n' @@ -64,7 +64,7 @@ def declare_parameter(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import * + sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.declare_parameter() 'mpc_t retval' @@ -79,7 +79,7 @@ def pass_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import * + sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.pass_argument() '((retval.__re))' @@ -94,7 +94,7 @@ def pass_call_c_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import * + sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.pass_call_c_argument() 'result' @@ -116,7 +116,7 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cc import * + sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: interp = CCInterpreter() sage: interp.name 'cc' diff --git a/src/sage_setup/autogen/interpreters/internal/specs/cdf.py b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py index c9ea258e221..ead9a23b2ad 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/cdf.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py @@ -34,7 +34,7 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.cdf import * + sage: from sage_setup.autogen.interpreters.internal.specs.cdf import * sage: interp = CDFInterpreter() sage: interp.name 'cdf' diff --git a/src/sage_setup/autogen/interpreters/internal/specs/element.py b/src/sage_setup/autogen/interpreters/internal/specs/element.py index 2f280f703f1..5748f57c584 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/element.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/element.py @@ -38,7 +38,7 @@ def setup_args(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.element import * + sage: from sage_setup.autogen.interpreters.internal.specs.element import * sage: mc = MemoryChunkElementArguments('args', ty_python) sage: mc.setup_args() 'mapped_args = [self._domain(a) for a in args]\n' @@ -52,7 +52,7 @@ def pass_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.element import * + sage: from sage_setup.autogen.interpreters.internal.specs.element import * sage: mc = MemoryChunkElementArguments('args', ty_python) sage: mc.pass_argument() '(mapped_args).ob_item' @@ -82,7 +82,7 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.element import * + sage: from sage_setup.autogen.interpreters.internal.specs.element import * sage: interp = ElementInterpreter() sage: interp.name 'el' diff --git a/src/sage_setup/autogen/interpreters/internal/specs/python.py b/src/sage_setup/autogen/interpreters/internal/specs/python.py index c185557165f..8e1ca4e6fbe 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/python.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/python.py @@ -32,7 +32,7 @@ def declare_class_members(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) """ return " cdef int _n_%s\n" % self.name @@ -46,7 +46,7 @@ class members. EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) sage: mc.init_class_members() " count = args['args']\n self._n_args = count\n" @@ -64,7 +64,7 @@ def setup_args(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) sage: mc.setup_args() '' @@ -78,7 +78,7 @@ def pass_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) sage: mc.pass_argument() '(args).ob_item' @@ -101,7 +101,7 @@ def __init__(self, name): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.name 'domain' @@ -118,7 +118,7 @@ def declare_class_members(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.declare_class_members() ' cdef object _domain\n' @@ -137,7 +137,7 @@ class members. EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.init_class_members() " self._domain = args['domain']\n" @@ -155,7 +155,7 @@ def declare_parameter(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.declare_parameter() 'PyObject* domain' @@ -170,7 +170,7 @@ def pass_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.pass_argument() 'self._domain' @@ -213,7 +213,7 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.python import * + sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: interp = PythonInterpreter() sage: interp.name 'py' diff --git a/src/sage_setup/autogen/interpreters/internal/specs/rdf.py b/src/sage_setup/autogen/interpreters/internal/specs/rdf.py index 95894f8d6d2..ec45a1fb295 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/rdf.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/rdf.py @@ -37,7 +37,7 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rdf import * + sage: from sage_setup.autogen.interpreters.internal.specs.rdf import * sage: interp = RDFInterpreter() sage: interp.name 'rdf' diff --git a/src/sage_setup/autogen/interpreters/internal/specs/rr.py b/src/sage_setup/autogen/interpreters/internal/specs/rr.py index 06452e24047..9630a8b065c 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/rr.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/rr.py @@ -31,7 +31,7 @@ def declare_class_members(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_class_members() '' @@ -46,7 +46,7 @@ class using this memory chunk, to allocate local variables. EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_call_locals() ' cdef RealNumber retval = (self.domain)()\n' @@ -64,7 +64,7 @@ def declare_parameter(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_parameter() 'mpfr_t retval' @@ -79,7 +79,7 @@ def pass_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.pass_argument() 'retval.value' @@ -94,7 +94,7 @@ def pass_call_c_argument(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.pass_call_c_argument() 'result' @@ -117,7 +117,7 @@ def __init__(self): EXAMPLES:: sage: from sage_setup.autogen.interpreters import * - sage: from sage_setup.autogen.interpreters.specs.rr import * + sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: interp = RRInterpreter() sage: interp.name 'rr' From b4cd883e47e1a512b3649df3acbee16519999eeb Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 02:51:23 +0000 Subject: [PATCH 182/229] fix classic build --- build/pkgs/sage_setup/dependencies | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/build/pkgs/sage_setup/dependencies b/build/pkgs/sage_setup/dependencies index cae3faf9049..497a8118c28 100644 --- a/build/pkgs/sage_setup/dependencies +++ b/build/pkgs/sage_setup/dependencies @@ -1,4 +1,4 @@ - cython pkgconfig jinja2 $(SAGE_ROOT)/pkgs/sage-setup/sage_setup/*.py $(SAGE_ROOT)/pkgs/sage-setup/sage_setup/autogen/interpreters/specs/*.py $(SAGE_ROOT)/pkgs/sage-setup/sage_setup/command/*.py | $(PYTHON_TOOLCHAIN) $(PYTHON) + cython pkgconfig jinja2 $(SAGE_ROOT)/pkgs/sage-setup/sage_setup/*.py $(SAGE_ROOT)/pkgs/sage-setup/sage_setup/autogen/interpreters/internal/specs/*.py $(SAGE_ROOT)/pkgs/sage-setup/sage_setup/command/*.py | $(PYTHON_TOOLCHAIN) $(PYTHON) ---------- All lines of this file are ignored except the first. From 2a9cd0ed55a0aad343f5f61e1bec0aa8a92ee232 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 03:18:49 +0000 Subject: [PATCH 183/229] fix import --- src/sage_setup/autogen/interpreters/__main__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage_setup/autogen/interpreters/__main__.py b/src/sage_setup/autogen/interpreters/__main__.py index 3649565e7a0..d869c0c0e3c 100755 --- a/src/sage_setup/autogen/interpreters/__main__.py +++ b/src/sage_setup/autogen/interpreters/__main__.py @@ -3,7 +3,7 @@ import argparse -from internal import rebuild +from .internal import rebuild parser = argparse.ArgumentParser() parser.add_argument("output_dir", help="Output directory") From 40c9f3d7ddbec6998b14f96d5cfe60465e4e2dff Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 28 Sep 2024 03:25:55 +0000 Subject: [PATCH 184/229] Revert "fix import" This reverts commit 2a9cd0ed55a0aad343f5f61e1bec0aa8a92ee232. --- src/sage_setup/autogen/interpreters/__main__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage_setup/autogen/interpreters/__main__.py b/src/sage_setup/autogen/interpreters/__main__.py index d869c0c0e3c..3649565e7a0 100755 --- a/src/sage_setup/autogen/interpreters/__main__.py +++ b/src/sage_setup/autogen/interpreters/__main__.py @@ -3,7 +3,7 @@ import argparse -from .internal import rebuild +from internal import rebuild parser = argparse.ArgumentParser() parser.add_argument("output_dir", help="Output directory") From f30e93b5e392c965590bccf025adcde12f1ef39a Mon Sep 17 00:00:00 2001 From: Dima Pasechnik Date: Sun, 13 Oct 2024 13:55:57 +0100 Subject: [PATCH 185/229] unignore a meson.build file --- .gitignore | 1 + 1 file changed, 1 insertion(+) diff --git a/.gitignore b/.gitignore index ce00e9a6f18..9b089164deb 100644 --- a/.gitignore +++ b/.gitignore @@ -146,6 +146,7 @@ __pycache__/ # Generated by sage_setup.autogen /src/sage/ext/interpreters +!/src/sage/ext/interpreters/meson.build # Generated Cython files *.so From f157a35c4f8e2fabf6c8efb75448281f305d09ea Mon Sep 17 00:00:00 2001 From: Dima Pasechnik Date: Mon, 14 Oct 2024 13:04:54 +0100 Subject: [PATCH 186/229] add missing matching.py to the list --- src/sage/graphs/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index 4d47452322b..f657421d086 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -35,6 +35,7 @@ py.install_sources( 'independent_sets.pxd', 'isgci.py', 'lovasz_theta.py', + 'matching.py', 'mcqd.pxd', 'orientations.py', 'partial_cube.py', From 6035173a3443cf734aeb5cad8eb0cf30d0c1e81a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:07:21 +0000 Subject: [PATCH 187/229] add runtime dependencies to pyproject.toml --- pyproject.toml | 143 +++++++++++++++++++++++++++++++++++++++++++++++-- 1 file changed, 140 insertions(+), 3 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 1e910cf2765..a13b8919b79 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,13 +6,150 @@ requires = [ 'cypari2 >=2.1.1', 'cysignals >=1.11.4', # Exclude 3.0.3 because of https://github.com/cython/cython/issues/5748 - 'cython >=3.0, != 3.0.3, <4.0', + 'cython >=3.0, != 3.0.3', 'gmpy2 ~=2.1.b999', 'memory_allocator', 'numpy >=1.19', 'jinja2' ] - [project] -name = 'sagemath' +name = "sagemath" +description = "Sage: Open Source Mathematics Software: Standard Python Library" +dependencies = [ + 'six >=1.15.0', + 'conway-polynomials >=0.8', + 'cypari2 >=2.1.1', + 'cysignals >=1.10.2', + 'cython >=3.0, != 3.0.3', + 'gmpy2 ~=2.1.b999', + 'lrcalc ~=2.1', + 'memory_allocator', + 'numpy >=1.19', + # Issue #30922: pplpy 0.8.4 and earlier do not declare dependencies correctly + 'pplpy >=0.8.6', + 'primecountpy', + 'requests >=2.13.0', + # According to https://github.com/python/typing_extensions/blob/main/CHANGELOG.md, + # version 4.4.0 adds another Python 3.11 typing backport + 'typing_extensions >= 4.4.0; python_version<"3.11"', + 'ipython >=7.13.0', + 'pexpect >=4.8.0', + 'sphinx >=5.2, <9', + 'networkx >=2.4', + # 1.8 is known good version. + # Per https://docs.scipy.org/doc/scipy/dev/core-dev/index.html#version-numbering + # and https://docs.scipy.org/doc/scipy/dev/core-dev/index.html#deprecations, + # deprecations cannot be introduced in micro releases. + # SciPy devs wait "at least 6 months", "in practice two (minor) releases" + # from deprecation to removal of a feature. + 'scipy >=1.5', + 'sympy >=1.6, <2.0', + # Issue #33642: Set lower bound for use of matplotlib color maps introduced in #33491, + # and to suppress deprecation warnings (https://github.com/matplotlib/matplotlib/pull/21073) + 'matplotlib >=3.5.1', + 'pillow >=7.2.0', + 'mpmath >=1.1.0', + 'ipykernel >=5.2.1', + 'jupyter-client', + 'ipywidgets >=7.5.1', + 'fpylll >=0.5.9', + 'ptyprocess > 0.5', +] dynamic = ["version"] +license = {text = "GNU General Public License (GPL) v2 or later"} +authors = [{name = "The Sage Developers", email = "sage-support@googlegroups.com"}] +classifiers = [ + "Development Status :: 6 - Mature", + "Intended Audience :: Education", + "Intended Audience :: Science/Research", + "License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)", + "Operating System :: POSIX", + "Operating System :: MacOS :: MacOS X", + "Programming Language :: Python :: 3 :: Only", + "Programming Language :: Python :: 3.9", + "Programming Language :: Python :: 3.10", + "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", + "Programming Language :: Python :: Implementation :: CPython", + "Topic :: Scientific/Engineering :: Mathematics", +] +urls = {Homepage = "https://www.sagemath.org"} +requires-python = ">=3.9, <3.13" + +[project.optional-dependencies] +R = [ + 'rpy2 >=3.3', +] + +[project.readme] +file = "README.rst" +content-type = "text/x-rst" + +[tool.conda-lock] +platforms = [ + 'osx-64', 'linux-64', 'linux-aarch64', 'osx-arm64' +] + +[external] +# External dependencies in the format proposed by https://peps.python.org/pep-0725 +build-requires = [ + "virtual:compiler/c", + "virtual:compiler/cpp", + "pkg:generic/pkg-config" +] + +host-requires = [ + "virtual:interface/blas", + "pkg:generic/boost", + "pkg:generic/brial", + "pkg:generic/cddlib", + "pkg:generic/cliquer", + "pkg:generic/ecl", + "pkg:generic/eclib", + "pkg:generic/ecm", + "pkg:generic/fflas-ffpack", + "pkg:generic/fplll", + "pkg:generic/flint", + "pkg:generic/libgd", + "pkg:generic/gap", + "pkg:generic/gfan", + "pkg:generic/giac", + "pkg:generic/givaro", + "pkg:generic/glpk", + "pkg:generic/gmp", + "pkg:generic/gsl", + "pkg:generic/iml", + "pkg:generic/lcalc", + "pkg:generic/libbraiding", + "pkg:generic/libhomfly", + "pkg:generic/linbox", + "pkg:generic/lrcalc", + "pkg:generic/m4ri", + "pkg:generic/m4rie", + "pkg:generic/maxima", + "pkg:generic/mpc", + "pkg:generic/mpfi", + "pkg:generic/mpfr", + "pkg:generic/nauty", + "pkg:generic/ntl", + "pkg:generic/palp", + "pkg:generic/pari", + "pkg:generic/pari-elldata", + "pkg:generic/pari-galdata", + "pkg:generic/pari-seadata", + "pkg:generic/planarity", + "pkg:generic/ppl", + "pkg:generic/primesieve", + "pkg:generic/primecount", + "pkg:generic/qhull", + "pkg:generic/rw", + "pkg:generic/singular", + "pkg:generic/symmetrica", + "pkg:generic/sympow", +] + +dependencies = [ + "pkg:generic/tachyon", + "pkg:generic/sagemath-polytopes-db", + "pkg:generic/sagemath-elliptic-curves", +] From ae996addad8e18d491aef67782a66a4e29f03526 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:30:25 +0000 Subject: [PATCH 188/229] improve numpy dependency discovery --- pyproject.toml | 5 ++++- src/meson.build | 13 +------------ src/sage/algebras/fusion_rings/meson.build | 8 ++++---- src/sage/calculus/meson.build | 3 +-- src/sage/matrix/meson.build | 4 ++-- src/sage/modules/meson.build | 6 ++---- src/sage/plot/meson.build | 4 ++-- src/sage/plot/plot3d/meson.build | 4 ++-- src/sage/rings/polynomial/meson.build | 4 ++-- src/sage/schemes/elliptic_curves/meson.build | 4 ++-- src/sage/stats/meson.build | 4 ++-- 11 files changed, 24 insertions(+), 35 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a13b8919b79..f4627ea4789 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,13 +3,16 @@ build-backend = 'mesonpy' # Minimum requirements for the build system to execute. requires = [ 'meson-python', + # Require 1.4.0 for better numpy integration + 'meson >= 1.4.0', 'cypari2 >=2.1.1', 'cysignals >=1.11.4', # Exclude 3.0.3 because of https://github.com/cython/cython/issues/5748 'cython >=3.0, != 3.0.3', 'gmpy2 ~=2.1.b999', 'memory_allocator', - 'numpy >=1.19', + # Require 2.0.0 for better meson integration + 'numpy >=2.0.0', 'jinja2' ] [project] diff --git a/src/meson.build b/src/meson.build index ba3900506a9..a3aab0f8f27 100644 --- a/src/meson.build +++ b/src/meson.build @@ -4,18 +4,7 @@ cpp = meson.get_compiler('cpp') cython = meson.get_compiler('cython') # Setup dependencies that are needed by many modules -inc_numpy = run_command( - py, - [ - '-c', - ''' -import numpy -print(numpy.get_include()) - '''.strip(), - ], - check: true, -).stdout().strip() -numpy = declare_dependency(include_directories: inc_numpy) +numpy = dependency('numpy') inc_cysignals = run_command( py, diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index 281460a066a..d2632dfb751 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -22,8 +22,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/algebras/fusion_rings', install: true, - include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp], + include_directories: [inc_cpython, inc_ntl, inc_rings], + dependencies: [py_dep, cysignals, gmp, numpy], ) endforeach @@ -40,8 +40,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/algebras/fusion_rings', install: true, override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp, singular], + include_directories: [inc_cpython, inc_ntl, inc_rings], + dependencies: [py_dep, cysignals, gmp, numpy, singular], ) endforeach diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index 541d7d86d75..b890e46d72c 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -29,8 +29,7 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/calculus', install: true, - include_directories: [inc_numpy], - dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep], + dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep, numpy], ) endforeach diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 7a60938775f..5b43aaffb95 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -97,6 +97,7 @@ foreach name, pyx : extension_data mpfr, mtx, ntl, + numpy, pari, png, zlib, @@ -115,7 +116,6 @@ foreach name, pyx : extension_data inc_ext, inc_flint, inc_ntl, - inc_numpy, inc_rings, inc_rings_finite, ], @@ -148,7 +148,6 @@ foreach name, pyx : extension_data_cpp inc_ext, inc_flint, inc_ntl, - inc_numpy, inc_rings, inc_rings_finite, ], @@ -172,6 +171,7 @@ foreach name, pyx : extension_data_cpp mpfr, mtx, ntl, + numpy, pari, png, singular, diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 43b874eba05..30002b5a43a 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -53,11 +53,10 @@ foreach name, pyx : extension_data include_directories: [ inc_cpython, inc_ext, - inc_numpy, inc_rings, inc_rings_finite, ], - dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, numpy, png], ) endforeach @@ -73,11 +72,10 @@ foreach name, pyx : extension_data_cpp include_directories: [ inc_cpython, inc_ext, - inc_numpy, inc_rings, inc_rings_finite, ], - dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, numpy, png], ) endforeach diff --git a/src/sage/plot/meson.build b/src/sage/plot/meson.build index 96a337faf78..ea002abb13a 100644 --- a/src/sage/plot/meson.build +++ b/src/sage/plot/meson.build @@ -40,8 +40,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/plot', install: true, - include_directories: [inc_cpython, inc_gsl, inc_numpy, inc_rings], - dependencies: [py_dep, cysignals, gmp, gsl], + include_directories: [inc_cpython, inc_gsl, inc_rings], + dependencies: [py_dep, cysignals, gmp, gsl, numpy], ) endforeach diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 4b8b4e23fe3..4fc86524598 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -30,8 +30,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/plot/plot3d', install: true, - include_directories: [inc_cpython, inc_ext, inc_numpy], - dependencies: [py_dep, cysignals, gmp], + include_directories: [inc_cpython, inc_ext], + dependencies: [py_dep, cysignals, gmp, numpy], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index c1625c5eb94..b628d679c60 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -102,7 +102,6 @@ foreach name, pyx : extension_data inc_ext, inc_flint, inc_ntl, - inc_numpy, inc_rings, inc_rings_finite, ], @@ -116,6 +115,7 @@ foreach name, pyx : extension_data mpfi, mpfr, ntl, + numpy, pari, ], ) @@ -149,7 +149,6 @@ foreach name, pyx : extension_data_cpp inc_ext, inc_flint, inc_ntl, - inc_numpy, inc_rings, inc_rings_finite, ], @@ -163,6 +162,7 @@ foreach name, pyx : extension_data_cpp mpfi, mpfr, ntl, + numpy, pari, singular, ], diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index 3448c5d1c0a..1741e3f2f24 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -64,8 +64,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/schemes/elliptic_curves', install: true, - include_directories: [inc_cpython, inc_flint, inc_numpy, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, pari], + include_directories: [inc_cpython, inc_flint, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, numpy, pari], ) endforeach diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build index 36cafd71142..ec7775a94c0 100644 --- a/src/sage/stats/meson.build +++ b/src/sage/stats/meson.build @@ -11,8 +11,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/stats', install: true, - include_directories: [inc_cpython, inc_numpy], - dependencies: [py_dep, cysignals, gmp], + include_directories: [inc_cpython], + dependencies: [py_dep, cysignals, gmp, numpy], ) endforeach From e2c1f8b149a928796ebb9c7da4c9c05132fe1032 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:31:53 +0000 Subject: [PATCH 189/229] remove duplicate iml dep --- src/meson.build | 1 - 1 file changed, 1 deletion(-) diff --git a/src/meson.build b/src/meson.build index a3aab0f8f27..d74abf376f7 100644 --- a/src/meson.build +++ b/src/meson.build @@ -83,7 +83,6 @@ gsl = dependency( required: true, ) gd = cc.find_library('gd') -iml = cc.find_library('iml') m = cc.find_library('m') m4ri = cc.find_library('m4ri') m4rie = cc.find_library('m4rie') From a6beefae71fe3565777db21a932d2b5388047e50 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:33:22 +0000 Subject: [PATCH 190/229] remove unused subproject --- src/meson.build | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/meson.build b/src/meson.build index d74abf376f7..9fd736e940a 100644 --- a/src/meson.build +++ b/src/meson.build @@ -58,8 +58,6 @@ flint = dependency( allow_fallback: false, ) if not flint.found() - flint = subproject('flint').get_variable('flint_dep') -else # Currently the flint pkg-config file is broken, so we manually use find_library # Can be removed once we require a version of flint that ships https://github.com/flintlib/flint/pull/1647 flint = cc.find_library('flint') From 983085964156d43843a036b5709bdb71e0cadb0a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:37:17 +0000 Subject: [PATCH 191/229] cleanup subprojects --- src/meson.build | 6 +----- src/sage/libs/lcalc/meson.build | 12 +----------- 2 files changed, 2 insertions(+), 16 deletions(-) diff --git a/src/meson.build b/src/meson.build index 9fd736e940a..334e909f4ce 100644 --- a/src/meson.build +++ b/src/meson.build @@ -109,13 +109,9 @@ gc = cc.find_library('gc') homfly = cc.find_library('homfly') mpc = cc.find_library('mpc') mpfi = cc.find_library('mpfi') -mpc = cc.find_library('mpc') # Cannot be found via pkg-config (pkg-config file will be added in 4.13) # Test for common.h header that was added in 4.12 as a indirect version check -gap = cc.find_library('gap', has_headers: ['gap/common.h'], required: false) -if not gap.found() - gap = subproject('gap').get_variable('gap_dep') -endif +gap = cc.find_library('gap', has_headers: ['gap/common.h']) singular = dependency('Singular') diff --git a/src/sage/libs/lcalc/meson.build b/src/sage/libs/lcalc/meson.build index bb89cac48a2..aa6d9296948 100644 --- a/src/sage/libs/lcalc/meson.build +++ b/src/sage/libs/lcalc/meson.build @@ -1,14 +1,4 @@ -# Once https://github.com/mesonbuild/meson/pull/12616 is released, we can simply do the following: -# lcalc = dependency('lcalc', version: '>= 2.0.0') -lcalc = dependency( - 'lcalc', - version: '>= 2.0.0', - required: false, - allow_fallback: false, -) -if not lcalc.found() - lcalc = subproject('lcalc').get_variable('lcalc_dep') -endif +lcalc = dependency('lcalc', version: '>= 2.0.0') py.install_sources( '__init__.py', From 8f7231343c32913d5035931166e3d83e667263bc Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:38:55 +0000 Subject: [PATCH 192/229] check for homfly header --- src/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/meson.build b/src/meson.build index 334e909f4ce..a523c027989 100644 --- a/src/meson.build +++ b/src/meson.build @@ -106,7 +106,7 @@ if not linbox.found() endif braiding = cc.find_library('braiding') gc = cc.find_library('gc') -homfly = cc.find_library('homfly') +homfly = cc.find_library('homfly', has_headers: ['homfly.h']) mpc = cc.find_library('mpc') mpfi = cc.find_library('mpfi') # Cannot be found via pkg-config (pkg-config file will be added in 4.13) From c82c1ee42bb9ff6e7f761d433abca3c58bf126e1 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 13:46:05 +0000 Subject: [PATCH 193/229] specify default c and cpp std --- meson.build | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/meson.build b/meson.build index 875d51bbe54..4465d34e536 100644 --- a/meson.build +++ b/meson.build @@ -3,6 +3,10 @@ project( ['c', 'cpp', 'cython'], version: files('src/VERSION.txt'), license: 'GPL v3', + default_options: [ + 'c_std=c17', + 'cpp_std=c++17', + ], ) # Python module From c590f5c02e061b4d13d6f611d145ea292a7f37e9 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 14:02:53 +0000 Subject: [PATCH 194/229] explain how to set include and library path manually --- src/doc/en/installation/meson.rst | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index f158551c732..866a6a2284a 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -18,7 +18,15 @@ Assume we're starting from a clean repo and a fully set up conda environment:: ``` Alternatively, install all build requirements as described in section -:ref:`section-prereqs`. +:ref:`section-prereqs`. In the likely case that you have to install some +dependencies manually, set the correct environment variables to point +to the installed libraries: + + ```bash + export C_INCLUDE_PATH=$C_INCLUDE_PATH:/your/path/to/include + export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/your/path/to/include + export LIBRARY_PATH=$LIBRARY_PATH:/your/path/to/lib + ``` .. NOTE:: From bcdcb8a7234c0839b8456206cf9a7b1a4bbb09ef Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 14:03:13 +0000 Subject: [PATCH 195/229] fix imports in tests --- .../autogen/interpreters/internal/__init__.py | 4 +- .../interpreters/internal/generator.py | 18 ++-- .../interpreters/internal/instructions.py | 22 ++--- .../autogen/interpreters/internal/memory.py | 46 +++++------ .../interpreters/internal/specs/base.py | 6 +- .../autogen/interpreters/internal/specs/cc.py | 12 +-- .../interpreters/internal/specs/cdf.py | 2 +- .../interpreters/internal/specs/element.py | 6 +- .../interpreters/internal/specs/python.py | 20 ++--- .../interpreters/internal/specs/rdf.py | 2 +- .../autogen/interpreters/internal/specs/rr.py | 12 +-- .../autogen/interpreters/internal/storage.py | 82 +++++++++---------- .../autogen/interpreters/internal/utils.py | 2 +- 13 files changed, 117 insertions(+), 117 deletions(-) diff --git a/src/sage_setup/autogen/interpreters/internal/__init__.py b/src/sage_setup/autogen/interpreters/internal/__init__.py index 879ea6c4f34..c2489ecd486 100644 --- a/src/sage_setup/autogen/interpreters/internal/__init__.py +++ b/src/sage_setup/autogen/interpreters/internal/__init__.py @@ -139,7 +139,7 @@ def build_interp(interp_spec, dir): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: testdir = tmp_dir() sage: rdf_interp = RDFInterpreter() @@ -181,7 +181,7 @@ def rebuild(dirname, force=False, interpreters=None, distribution=None): Monolithic build:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: testdir = tmp_dir() sage: rebuild(testdir) Generating interpreters for fast_callable in ... diff --git a/src/sage_setup/autogen/interpreters/internal/generator.py b/src/sage_setup/autogen/interpreters/internal/generator.py index 18e594a761a..ebfea5478fc 100644 --- a/src/sage_setup/autogen/interpreters/internal/generator.py +++ b/src/sage_setup/autogen/interpreters/internal/generator.py @@ -42,7 +42,7 @@ def __init__(self, spec): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) @@ -72,7 +72,7 @@ def gen_code(self, instr_desc, write): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) @@ -219,7 +219,7 @@ def func_header(self, cython=False): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter sage: interp = ElementInterpreter() sage: gen = InterpreterGenerator(interp) @@ -262,7 +262,7 @@ def write_interpreter(self, write): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) @@ -310,7 +310,7 @@ def write_wrapper(self, write): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) @@ -480,7 +480,7 @@ def write_pxd(self, write): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: gen = InterpreterGenerator(interp) @@ -532,7 +532,7 @@ def get_interpreter(self): First we get the InterpreterSpec for several interpreters:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter @@ -657,7 +657,7 @@ def get_wrapper(self): First we get the InterpreterSpec for several interpreters:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter @@ -983,7 +983,7 @@ def get_pxd(self): First we get the InterpreterSpec for several interpreters:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter diff --git a/src/sage_setup/autogen/interpreters/internal/instructions.py b/src/sage_setup/autogen/interpreters/internal/instructions.py index b73eec031d2..aad7583196d 100644 --- a/src/sage_setup/autogen/interpreters/internal/instructions.py +++ b/src/sage_setup/autogen/interpreters/internal/instructions.py @@ -56,7 +56,7 @@ def params_gen(**chunks): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc_stack = MemoryChunkScratch('stack', ty_double, is_stack=True) sage: mc_args = MemoryChunkArguments('args', ty_double) sage: mc_code = MemoryChunkConstants('code', ty_int) @@ -186,7 +186,7 @@ class InstrSpec(object): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: InstrSpec('add', pg('SS','S'), code='o0 = i0+i1;') @@ -213,7 +213,7 @@ def __init__(self, name, io, code=None, uses_error_handler=False, EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: InstrSpec('add', pg('SS','S'), code='o0 = i0+i1;') @@ -288,7 +288,7 @@ def __repr__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: InstrSpec('add', pg('SS','S'), code='o0 = i0+i1;') @@ -311,7 +311,7 @@ def instr_infix(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: instr_infix('mul', pg('SS', 'S'), '*') @@ -327,7 +327,7 @@ def instr_funcall_2args(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: instr_funcall_2args('atan2', pg('SS', 'S'), 'atan2') @@ -343,7 +343,7 @@ def instr_unary(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: pg = RDFInterpreter().pg sage: instr_unary('sin', pg('S','S'), 'sin(i0)') @@ -361,7 +361,7 @@ def instr_funcall_2args_mpfr(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: pg = RRInterpreter().pg sage: instr_funcall_2args_mpfr('add', pg('SS','S'), 'mpfr_add') @@ -377,7 +377,7 @@ def instr_funcall_1arg_mpfr(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: pg = RRInterpreter().pg sage: instr_funcall_1arg_mpfr('exp', pg('S','S'), 'mpfr_exp') @@ -392,7 +392,7 @@ def instr_funcall_2args_mpc(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import CCInterpreter sage: pg = CCInterpreter().pg sage: instr_funcall_2args_mpc('add', pg('SS','S'), 'mpc_add') @@ -407,7 +407,7 @@ def instr_funcall_1arg_mpc(name, io, op): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import CCInterpreter sage: pg = CCInterpreter().pg sage: instr_funcall_1arg_mpc('exp', pg('S','S'), 'mpc_exp') diff --git a/src/sage_setup/autogen/interpreters/internal/memory.py b/src/sage_setup/autogen/interpreters/internal/memory.py index 575d3867295..801596e98c8 100644 --- a/src/sage_setup/autogen/interpreters/internal/memory.py +++ b/src/sage_setup/autogen/interpreters/internal/memory.py @@ -27,7 +27,7 @@ def string_of_addr(a): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc_code = MemoryChunkConstants('code', ty_int) sage: string_of_addr(mc_code) '*code++' @@ -72,7 +72,7 @@ def __init__(self, name, storage_type): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: mc.name 'args' @@ -88,7 +88,7 @@ def __repr__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: mc {MC:args} @@ -104,7 +104,7 @@ def declare_class_members(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: mc.declare_class_members() ' cdef int _n_args\n cdef mpfr_t* _args\n' @@ -119,7 +119,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: print(mc.init_class_members()) count = args['args'] @@ -139,7 +139,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: print(mc.dealloc_class_members()) if self._args: @@ -157,7 +157,7 @@ def declare_parameter(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: mc.declare_parameter() 'mpfr_t* args' @@ -171,7 +171,7 @@ class using this memory chunk, to allocate local variables. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_call_locals() @@ -186,7 +186,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkConstants('constants', ty_mpfr) sage: mc.pass_argument() 'self._constants' @@ -201,7 +201,7 @@ def pass_call_c_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkConstants('constants', ty_mpfr) sage: mc.pass_call_c_argument() 'self._constants' @@ -221,7 +221,7 @@ def needs_cleanup_on_error(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkConstants('constants', ty_mpfr) sage: mc.needs_cleanup_on_error() False @@ -246,7 +246,7 @@ def is_stack(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkScratch('scratch', ty_mpfr) sage: mc.is_stack() False @@ -268,7 +268,7 @@ def is_python_refcounted_stack(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkScratch('args', ty_python) sage: mc.is_python_refcounted_stack() False @@ -297,7 +297,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_double) sage: print(mc.init_class_members()) count = args['args'] @@ -318,7 +318,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: print(mc.dealloc_class_members()) if self._args: @@ -336,7 +336,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkConstants('constants', ty_mpfr) sage: mc.pass_argument() 'self._constants' @@ -360,7 +360,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkConstants('constants', ty_mpfr) sage: print(mc.init_class_members()) val = args['constants'] @@ -398,7 +398,7 @@ def setup_args(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: print(mc.setup_args()) cdef mpfr_t* c_args = self._args @@ -422,7 +422,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkArguments('args', ty_mpfr) sage: mc.pass_argument() 'c_args' @@ -449,7 +449,7 @@ def __init__(self, name, storage_type, is_stack=False): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkScratch('stack', ty_double, is_stack=True) sage: mc.name 'stack' @@ -469,7 +469,7 @@ def is_stack(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkScratch('stack', ty_mpfr, is_stack=True) sage: mc.is_stack() True @@ -489,7 +489,7 @@ def needs_cleanup_on_error(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkScratch('registers', ty_python) sage: mc.needs_cleanup_on_error() True @@ -508,7 +508,7 @@ def handle_cleanup(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: mc = MemoryChunkScratch('registers', ty_python) sage: print(mc.handle_cleanup()) for i in range(self._n_registers): diff --git a/src/sage_setup/autogen/interpreters/internal/specs/base.py b/src/sage_setup/autogen/interpreters/internal/specs/base.py index ee32cdc8020..6abd2253870 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/base.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/base.py @@ -48,7 +48,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: interp = RDFInterpreter() @@ -85,7 +85,7 @@ def _set_opcodes(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: interp = RDFInterpreter() sage: interp.instr_descs[5].opcode @@ -130,7 +130,7 @@ def __init__(self, type, mc_retval=None): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import RDFInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.rr import RRInterpreter sage: from sage_setup.autogen.interpreters.internal.specs.element import ElementInterpreter diff --git a/src/sage_setup/autogen/interpreters/internal/specs/cc.py b/src/sage_setup/autogen/interpreters/internal/specs/cc.py index bdb545da7d8..f6ac4b48c7e 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/cc.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/cc.py @@ -30,7 +30,7 @@ def declare_class_members(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.declare_class_members() @@ -45,7 +45,7 @@ class using this memory chunk, to allocate local variables. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.declare_call_locals() @@ -63,7 +63,7 @@ def declare_parameter(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.declare_parameter() @@ -78,7 +78,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.pass_argument() @@ -93,7 +93,7 @@ def pass_call_c_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: mc = MemoryChunkCCRetval('retval', ty_mpc) sage: mc.pass_call_c_argument() @@ -115,7 +115,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cc import * sage: interp = CCInterpreter() sage: interp.name diff --git a/src/sage_setup/autogen/interpreters/internal/specs/cdf.py b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py index ead9a23b2ad..d59c9959ba1 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/cdf.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py @@ -33,7 +33,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.cdf import * sage: interp = CDFInterpreter() sage: interp.name diff --git a/src/sage_setup/autogen/interpreters/internal/specs/element.py b/src/sage_setup/autogen/interpreters/internal/specs/element.py index 5748f57c584..bb4276793c6 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/element.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/element.py @@ -37,7 +37,7 @@ def setup_args(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.element import * sage: mc = MemoryChunkElementArguments('args', ty_python) sage: mc.setup_args() @@ -51,7 +51,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.element import * sage: mc = MemoryChunkElementArguments('args', ty_python) sage: mc.pass_argument() @@ -81,7 +81,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.element import * sage: interp = ElementInterpreter() sage: interp.name diff --git a/src/sage_setup/autogen/interpreters/internal/specs/python.py b/src/sage_setup/autogen/interpreters/internal/specs/python.py index 8e1ca4e6fbe..24bab75f10d 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/python.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/python.py @@ -31,7 +31,7 @@ def declare_class_members(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) """ @@ -45,7 +45,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) sage: mc.init_class_members() @@ -63,7 +63,7 @@ def setup_args(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) sage: mc.setup_args() @@ -77,7 +77,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPythonArguments('args', ty_python) sage: mc.pass_argument() @@ -100,7 +100,7 @@ def __init__(self, name): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.name @@ -117,7 +117,7 @@ def declare_class_members(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.declare_class_members() @@ -136,7 +136,7 @@ class members. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.init_class_members() @@ -154,7 +154,7 @@ def declare_parameter(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.declare_parameter() @@ -169,7 +169,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: mc = MemoryChunkPyConstant('domain') sage: mc.pass_argument() @@ -212,7 +212,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.python import * sage: interp = PythonInterpreter() sage: interp.name diff --git a/src/sage_setup/autogen/interpreters/internal/specs/rdf.py b/src/sage_setup/autogen/interpreters/internal/specs/rdf.py index ec45a1fb295..83a0ecde012 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/rdf.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/rdf.py @@ -36,7 +36,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rdf import * sage: interp = RDFInterpreter() sage: interp.name diff --git a/src/sage_setup/autogen/interpreters/internal/specs/rr.py b/src/sage_setup/autogen/interpreters/internal/specs/rr.py index 9630a8b065c..a589f2f5de7 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/rr.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/rr.py @@ -30,7 +30,7 @@ def declare_class_members(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_class_members() @@ -45,7 +45,7 @@ class using this memory chunk, to allocate local variables. EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_call_locals() @@ -63,7 +63,7 @@ def declare_parameter(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.declare_parameter() @@ -78,7 +78,7 @@ def pass_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.pass_argument() @@ -93,7 +93,7 @@ def pass_call_c_argument(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: mc = MemoryChunkRRRetval('retval', ty_mpfr) sage: mc.pass_call_c_argument() @@ -116,7 +116,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: from sage_setup.autogen.interpreters.internal.specs.rr import * sage: interp = RRInterpreter() sage: interp.name diff --git a/src/sage_setup/autogen/interpreters/internal/storage.py b/src/sage_setup/autogen/interpreters/internal/storage.py index 291398fd9d9..5c956cbde60 100644 --- a/src/sage_setup/autogen/interpreters/internal/storage.py +++ b/src/sage_setup/autogen/interpreters/internal/storage.py @@ -67,7 +67,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.class_member_declarations '' sage: ty_double.class_member_initializations @@ -104,7 +104,7 @@ def cheap_copies(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.cheap_copies() True sage: ty_python.cheap_copies() @@ -126,7 +126,7 @@ def python_refcounted(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.python_refcounted() False sage: ty_python.python_refcounted() @@ -140,7 +140,7 @@ def cython_decl_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.cython_decl_type() 'double' sage: ty_python.cython_decl_type() @@ -157,7 +157,7 @@ def cython_array_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.cython_array_type() 'double*' sage: ty_python.cython_array_type() @@ -180,7 +180,7 @@ def needs_cython_init_clear(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.needs_cython_init_clear() False sage: ty_mpfr.needs_cython_init_clear() @@ -196,7 +196,7 @@ def c_decl_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.c_decl_type() 'double' sage: ty_python.c_decl_type() @@ -213,7 +213,7 @@ def c_ptr_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.c_ptr_type() 'double*' sage: ty_python.c_ptr_type() @@ -231,7 +231,7 @@ def c_reference_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.c_reference_type() 'double*' sage: ty_python.c_reference_type() @@ -248,7 +248,7 @@ def c_local_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.c_local_type() 'double' sage: ty_python.c_local_type() @@ -266,7 +266,7 @@ def assign_c_from_py(self, c, py): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.assign_c_from_py('foo', 'bar') 'foo = bar' sage: ty_python.assign_c_from_py('foo[i]', 'bar[j]') @@ -284,7 +284,7 @@ def declare_chunk_class_members(self, name): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.declare_chunk_class_members('args') ' cdef int _n_args\n cdef mpfr_t* _args\n' """ @@ -302,7 +302,7 @@ def alloc_chunk_data(self, name, len): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: print(ty_mpfr.alloc_chunk_data('args', 'MY_LENGTH')) self._n_args = MY_LENGTH self._args = check_allocarray(self._n_args, sizeof(mpfr_t)) @@ -328,7 +328,7 @@ def dealloc_chunk_data(self, name): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: print(ty_double.dealloc_chunk_data('args')) if self._args: sig_free(self._args) @@ -364,7 +364,7 @@ def __init__(self, ty): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.class_member_declarations '' sage: ty_double.class_member_initializations @@ -391,7 +391,7 @@ def cheap_copies(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.cheap_copies() True sage: ty_python.cheap_copies() @@ -405,7 +405,7 @@ def c_decl_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.c_decl_type() 'double' sage: ty_python.c_decl_type() @@ -422,7 +422,7 @@ def c_local_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_double.c_local_type() 'double' sage: ty_python.c_local_type() @@ -500,7 +500,7 @@ def __init__(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.class_member_declarations '' sage: ty_python.class_member_initializations @@ -521,7 +521,7 @@ def python_refcounted(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.python_refcounted() True """ @@ -533,7 +533,7 @@ def cython_decl_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.cython_decl_type() 'object' """ @@ -547,7 +547,7 @@ def declare_chunk_class_members(self, name): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.declare_chunk_class_members('args') ' cdef object _list_args\n cdef int _n_args\n cdef PyObject** _args\n' """ @@ -565,7 +565,7 @@ def alloc_chunk_data(self, name, len): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: print(ty_python.alloc_chunk_data('args', 'MY_LENGTH')) self._n_args = MY_LENGTH self._list_args = PyList_New(self._n_args) @@ -590,7 +590,7 @@ def dealloc_chunk_data(self, name): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.dealloc_chunk_data('args') '' """ @@ -605,7 +605,7 @@ def needs_cython_init_clear(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.needs_cython_init_clear() True """ @@ -619,7 +619,7 @@ def assign_c_from_py(self, c, py): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.assign_c_from_py('foo[i]', 'bar[j]') 'foo[i] = bar[j]; Py_INCREF(foo[i])' """ @@ -633,7 +633,7 @@ def cython_init(self, loc): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.cython_init('foo[i]') 'foo[i] = NULL' """ @@ -646,7 +646,7 @@ def cython_clear(self, loc): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_python.cython_clear('foo[i]') 'Py_CLEAR(foo[i])' """ @@ -674,7 +674,7 @@ def __init__(self, decl_ty, ref_ty): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.class_member_declarations 'cdef RealField_class domain\n' sage: ty_mpfr.class_member_initializations @@ -696,7 +696,7 @@ def c_decl_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.c_decl_type() 'mpfr_t' """ @@ -711,7 +711,7 @@ def c_local_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.c_local_type() 'mpfr_ptr' """ @@ -725,7 +725,7 @@ def c_reference_type(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.c_reference_type() 'mpfr_t' """ @@ -741,7 +741,7 @@ def needs_cython_init_clear(self): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.needs_cython_init_clear() True """ @@ -775,7 +775,7 @@ def __init__(self, id=''): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.class_member_declarations 'cdef RealField_class domain\n' sage: ty_mpfr.class_member_initializations @@ -812,7 +812,7 @@ def cython_init(self, loc): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.cython_init('foo[i]') 'mpfr_init2(foo[i], self.domain.prec())' """ @@ -826,7 +826,7 @@ def cython_clear(self, loc): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.cython_clear('foo[i]') 'mpfr_clear(foo[i])' """ @@ -840,7 +840,7 @@ def assign_c_from_py(self, c, py): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpfr.assign_c_from_py('foo[i]', 'bar[j]') 'rn = self.domain(bar[j])\nmpfr_set(foo[i], rn.value, MPFR_RNDN)' """ @@ -879,7 +879,7 @@ def __init__(self, id=''): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpc.class_member_declarations 'cdef object domain\ncdef ComplexNumber domain_element\n' sage: ty_mpc.class_member_initializations @@ -916,7 +916,7 @@ def cython_init(self, loc): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpc.cython_init('foo[i]') 'mpc_init2(foo[i], self.domain_element._prec)' """ @@ -930,7 +930,7 @@ def cython_clear(self, loc): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpc.cython_clear('foo[i]') 'mpc_clear(foo[i])' """ @@ -944,7 +944,7 @@ def assign_c_from_py(self, c, py): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: ty_mpc.assign_c_from_py('foo[i]', 'bar[j]') 'cn = self.domain(bar[j])\nmpc_set_fr_fr(foo[i], cn.__re, cn.__im, MPC_RNDNN)' """ diff --git a/src/sage_setup/autogen/interpreters/internal/utils.py b/src/sage_setup/autogen/interpreters/internal/utils.py index 10f239ed2a3..f2471257a7d 100644 --- a/src/sage_setup/autogen/interpreters/internal/utils.py +++ b/src/sage_setup/autogen/interpreters/internal/utils.py @@ -118,7 +118,7 @@ def write_if_changed(fn, value): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import * + sage: from sage_setup.autogen.interpreters.internal import * sage: def last_modification(fn): return os.stat(fn).st_mtime sage: fn = tmp_filename('gen_interp') sage: write_if_changed(fn, 'Hello, world') From cb797be28688e33d08d2cd9feff2d59e1bed9d7a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 14:14:00 +0000 Subject: [PATCH 196/229] Revert "improve numpy dependency discovery" This reverts commit ae996addad8e18d491aef67782a66a4e29f03526. --- pyproject.toml | 5 +---- src/meson.build | 13 ++++++++++++- src/sage/algebras/fusion_rings/meson.build | 8 ++++---- src/sage/calculus/meson.build | 3 ++- src/sage/matrix/meson.build | 4 ++-- src/sage/modules/meson.build | 6 ++++-- src/sage/plot/meson.build | 4 ++-- src/sage/plot/plot3d/meson.build | 4 ++-- src/sage/rings/polynomial/meson.build | 4 ++-- src/sage/schemes/elliptic_curves/meson.build | 4 ++-- src/sage/stats/meson.build | 4 ++-- 11 files changed, 35 insertions(+), 24 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index f4627ea4789..a13b8919b79 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -3,16 +3,13 @@ build-backend = 'mesonpy' # Minimum requirements for the build system to execute. requires = [ 'meson-python', - # Require 1.4.0 for better numpy integration - 'meson >= 1.4.0', 'cypari2 >=2.1.1', 'cysignals >=1.11.4', # Exclude 3.0.3 because of https://github.com/cython/cython/issues/5748 'cython >=3.0, != 3.0.3', 'gmpy2 ~=2.1.b999', 'memory_allocator', - # Require 2.0.0 for better meson integration - 'numpy >=2.0.0', + 'numpy >=1.19', 'jinja2' ] [project] diff --git a/src/meson.build b/src/meson.build index a523c027989..1c20ffe99c0 100644 --- a/src/meson.build +++ b/src/meson.build @@ -4,7 +4,18 @@ cpp = meson.get_compiler('cpp') cython = meson.get_compiler('cython') # Setup dependencies that are needed by many modules -numpy = dependency('numpy') +inc_numpy = run_command( + py, + [ + '-c', + ''' +import numpy +print(numpy.get_include()) + '''.strip(), + ], + check: true, +).stdout().strip() +numpy = declare_dependency(include_directories: inc_numpy) inc_cysignals = run_command( py, diff --git a/src/sage/algebras/fusion_rings/meson.build b/src/sage/algebras/fusion_rings/meson.build index d2632dfb751..281460a066a 100644 --- a/src/sage/algebras/fusion_rings/meson.build +++ b/src/sage/algebras/fusion_rings/meson.build @@ -22,8 +22,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/algebras/fusion_rings', install: true, - include_directories: [inc_cpython, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, gmp, numpy], + include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp], ) endforeach @@ -40,8 +40,8 @@ foreach name, pyx : extension_data_cpp subdir: 'sage/algebras/fusion_rings', install: true, override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ntl, inc_rings], - dependencies: [py_dep, cysignals, gmp, numpy, singular], + include_directories: [inc_cpython, inc_ntl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp, singular], ) endforeach diff --git a/src/sage/calculus/meson.build b/src/sage/calculus/meson.build index b890e46d72c..541d7d86d75 100644 --- a/src/sage/calculus/meson.build +++ b/src/sage/calculus/meson.build @@ -29,7 +29,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/calculus', install: true, - dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep, numpy], + include_directories: [inc_numpy], + dependencies: [py_dep, cysignals, gmp, gsl, interpreters_dep], ) endforeach diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 5b43aaffb95..7a60938775f 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -97,7 +97,6 @@ foreach name, pyx : extension_data mpfr, mtx, ntl, - numpy, pari, png, zlib, @@ -116,6 +115,7 @@ foreach name, pyx : extension_data inc_ext, inc_flint, inc_ntl, + inc_numpy, inc_rings, inc_rings_finite, ], @@ -148,6 +148,7 @@ foreach name, pyx : extension_data_cpp inc_ext, inc_flint, inc_ntl, + inc_numpy, inc_rings, inc_rings_finite, ], @@ -171,7 +172,6 @@ foreach name, pyx : extension_data_cpp mpfr, mtx, ntl, - numpy, pari, png, singular, diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 30002b5a43a..43b874eba05 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -53,10 +53,11 @@ foreach name, pyx : extension_data include_directories: [ inc_cpython, inc_ext, + inc_numpy, inc_rings, inc_rings_finite, ], - dependencies: [py_dep, cysignals, gd, gmp, m4ri, numpy, png], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], ) endforeach @@ -72,10 +73,11 @@ foreach name, pyx : extension_data_cpp include_directories: [ inc_cpython, inc_ext, + inc_numpy, inc_rings, inc_rings_finite, ], - dependencies: [py_dep, cysignals, gd, gmp, m4ri, numpy, png], + dependencies: [py_dep, cysignals, gd, gmp, m4ri, png], ) endforeach diff --git a/src/sage/plot/meson.build b/src/sage/plot/meson.build index ea002abb13a..96a337faf78 100644 --- a/src/sage/plot/meson.build +++ b/src/sage/plot/meson.build @@ -40,8 +40,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/plot', install: true, - include_directories: [inc_cpython, inc_gsl, inc_rings], - dependencies: [py_dep, cysignals, gmp, gsl, numpy], + include_directories: [inc_cpython, inc_gsl, inc_numpy, inc_rings], + dependencies: [py_dep, cysignals, gmp, gsl], ) endforeach diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 4fc86524598..4b8b4e23fe3 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -30,8 +30,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/plot/plot3d', install: true, - include_directories: [inc_cpython, inc_ext], - dependencies: [py_dep, cysignals, gmp, numpy], + include_directories: [inc_cpython, inc_ext, inc_numpy], + dependencies: [py_dep, cysignals, gmp], ) endforeach diff --git a/src/sage/rings/polynomial/meson.build b/src/sage/rings/polynomial/meson.build index b628d679c60..c1625c5eb94 100644 --- a/src/sage/rings/polynomial/meson.build +++ b/src/sage/rings/polynomial/meson.build @@ -102,6 +102,7 @@ foreach name, pyx : extension_data inc_ext, inc_flint, inc_ntl, + inc_numpy, inc_rings, inc_rings_finite, ], @@ -115,7 +116,6 @@ foreach name, pyx : extension_data mpfi, mpfr, ntl, - numpy, pari, ], ) @@ -149,6 +149,7 @@ foreach name, pyx : extension_data_cpp inc_ext, inc_flint, inc_ntl, + inc_numpy, inc_rings, inc_rings_finite, ], @@ -162,7 +163,6 @@ foreach name, pyx : extension_data_cpp mpfi, mpfr, ntl, - numpy, pari, singular, ], diff --git a/src/sage/schemes/elliptic_curves/meson.build b/src/sage/schemes/elliptic_curves/meson.build index 1741e3f2f24..3448c5d1c0a 100644 --- a/src/sage/schemes/elliptic_curves/meson.build +++ b/src/sage/schemes/elliptic_curves/meson.build @@ -64,8 +64,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/schemes/elliptic_curves', install: true, - include_directories: [inc_cpython, inc_flint, inc_rings], - dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, numpy, pari], + include_directories: [inc_cpython, inc_flint, inc_numpy, inc_rings], + dependencies: [py_dep, cypari2, cysignals, flint, gmp, mpfr, pari], ) endforeach diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build index ec7775a94c0..36cafd71142 100644 --- a/src/sage/stats/meson.build +++ b/src/sage/stats/meson.build @@ -11,8 +11,8 @@ foreach name, pyx : extension_data sources: pyx, subdir: 'sage/stats', install: true, - include_directories: [inc_cpython], - dependencies: [py_dep, cysignals, gmp, numpy], + include_directories: [inc_cpython, inc_numpy], + dependencies: [py_dep, cysignals, gmp], ) endforeach From 1ba15a9934aafd66613164477aadd5128a4b2ce2 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 14:18:54 +0000 Subject: [PATCH 197/229] fix pyproject.toml metadata --- pyproject.toml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a13b8919b79..47c125c4e26 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -82,8 +82,8 @@ R = [ ] [project.readme] -file = "README.rst" -content-type = "text/x-rst" +file = "README.md" +content-type = "text/markdown" [tool.conda-lock] platforms = [ From 451f40546ec09bb19e4f5c47e48eb21a91582f9d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 14:20:25 +0000 Subject: [PATCH 198/229] ignore also build dirs for other python versions --- .gitignore | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 9b089164deb..7d8c2f0adc4 100644 --- a/.gitignore +++ b/.gitignore @@ -306,7 +306,7 @@ worktree* builddir builddir-* build-install -build/cp311 +build/cp* # Meson temporary files src/sage/interfaces/__init__.py From f5d64cf9c3d224f2d93e85d69883c27457c39206 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:26:51 +0000 Subject: [PATCH 199/229] reformat meson files --- meson.build | 5 +---- src/sage/graphs/graph_decompositions/meson.build | 2 +- 2 files changed, 2 insertions(+), 5 deletions(-) diff --git a/meson.build b/meson.build index 4465d34e536..eb2022ce528 100644 --- a/meson.build +++ b/meson.build @@ -3,10 +3,7 @@ project( ['c', 'cpp', 'cython'], version: files('src/VERSION.txt'), license: 'GPL v3', - default_options: [ - 'c_std=c17', - 'cpp_std=c++17', - ], + default_options: ['c_std=c17', 'cpp_std=c++17'], ) # Python module diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index e16b5a022b4..3444a5a2175 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -20,7 +20,7 @@ extension_data = { 'graph_products' : files('graph_products.pyx'), 'rankwidth' : files('rankwidth.pyx'), 'tree_decomposition' : files('tree_decomposition.pyx'), - 'vertex_separation' : files('vertex_separation.pyx') + 'vertex_separation' : files('vertex_separation.pyx'), } foreach name, pyx : extension_data From 06e4dbe3f9cd07669ba17693a52a62cff2e0301d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:27:03 +0000 Subject: [PATCH 200/229] improve meson update tool --- tools/update-meson.py | 13 ++++++++++--- 1 file changed, 10 insertions(+), 3 deletions(-) diff --git a/tools/update-meson.py b/tools/update-meson.py index b85e35bfedc..87c8e556b37 100755 --- a/tools/update-meson.py +++ b/tools/update-meson.py @@ -135,6 +135,15 @@ def update_python_sources(self: Rewriter, visitor: AstPython): src_list = ext_data[folder] cython_files = sorted(list(folder.glob("*.pyx"))) + # Some cython files are compiled in a special way, so we don't want to add them + special_cython_files = { + "bliss.pyx", + "mcqd.pyx", + "tdlib.pyx", + "meataxe.pyx", + "sirocco.pyx", + } + cython_files = [x for x in cython_files if x.name not in special_cython_files] # Add all cython files that are not in the source list for file in cython_files: file_name = file.stem @@ -143,9 +152,7 @@ def update_python_sources(self: Rewriter, visitor: AstPython): token = Token("string", target.filename, 0, 0, 0, None, file_name) arg = ArgumentNode(Token("", target.filename, 0, 0, 0, None, "[]")) arg.append( - StringNode( - Token("string", target.filename, 0, 0, 0, None, file.name) - ) + StringNode(Token("string", target.filename, 0, 0, 0, None, file.name)) ) func = FunctionNode(_symbol("files"), _symbol("("), arg, _symbol(")")) target.value.args.kwargs.update({StringNode(token): func}) From e96d54d0af97cf24e3f595cba7a39bae0d197da6 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:42:40 +0000 Subject: [PATCH 201/229] fix compilation --- src/meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/meson.build b/src/meson.build index 1c20ffe99c0..acad673dbb9 100644 --- a/src/meson.build +++ b/src/meson.build @@ -68,7 +68,7 @@ flint = dependency( required: false, allow_fallback: false, ) -if not flint.found() +if flint.found() # Currently the flint pkg-config file is broken, so we manually use find_library # Can be removed once we require a version of flint that ships https://github.com/flintlib/flint/pull/1647 flint = cc.find_library('flint') From e78e19b5188b8b646141bdf42c91fdbf64617d6d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:43:00 +0000 Subject: [PATCH 202/229] exclude main files from testing --- src/sage/doctest/control.py | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/src/sage/doctest/control.py b/src/sage/doctest/control.py index e6fcc29a61b..ef2401e887f 100644 --- a/src/sage/doctest/control.py +++ b/src/sage/doctest/control.py @@ -284,8 +284,11 @@ def skipfile(filename, tested_optional_tags=False, *, """ if filename.endswith('.rst.txt'): ext = '.rst.txt' - else: - base, ext = os.path.splitext(filename) + if filename.endswith('__main__.py'): + if log: + log(f"Skipping '{filename}' because it is a __main__.py file") + return True + _ , ext = os.path.splitext(filename) # .rst.txt appear in the installed documentation in subdirectories named "_sources" if ext not in ('.py', '.pyx', '.pxd', '.pxi', '.sage', '.spyx', '.rst', '.tex', '.rst.txt'): if log: From c33134baebf456b15ed58da9d166e49236a6514f Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:43:09 +0000 Subject: [PATCH 203/229] exclude symlink from vscode search --- .vscode/settings.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.vscode/settings.json b/.vscode/settings.json index 86eac03ffe9..052b55fe189 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -15,7 +15,8 @@ "pkgs/sage-conf_pypi/sage_root": true, "pkgs/sage-docbuild/sage_docbuild": true, "pkgs/sage-setup/sage_setup": true, - "pkgs/sagemath-*/sage": true + "pkgs/sagemath-*/sage": true, + "pkgs/sagemath-*/sage_setup": true }, "python.testing.pytestEnabled": true, "python.testing.pytestArgs": [ From 4048c7567a8c2e7addc5817b68b5ebd0385a816e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:52:23 +0000 Subject: [PATCH 204/229] further improvements to flint dpendency handling --- src/meson.build | 15 ++++----------- 1 file changed, 4 insertions(+), 11 deletions(-) diff --git a/src/meson.build b/src/meson.build index acad673dbb9..44ecef27532 100644 --- a/src/meson.build +++ b/src/meson.build @@ -60,17 +60,10 @@ pari = cc.find_library('pari') mpfr = cc.find_library('mpfr') -# Once https://github.com/mesonbuild/meson/pull/12616 is released, we can simply do the following: -# flint = dependency('flint', version : '>=3.0.0') -flint = dependency( - 'flint', - version: '>=3.0.0', - required: false, - allow_fallback: false, -) -if flint.found() - # Currently the flint pkg-config file is broken, so we manually use find_library - # Can be removed once we require a version of flint that ships https://github.com/flintlib/flint/pull/1647 +flint = dependency('flint', version: '>=3.0.0') +if flint.version().version_compare('<3.1') + # In older versions of flint, pkg-config file is broken, so we manually use find_library + # This has been fixed in flint v3.1: https://github.com/flintlib/flint/pull/1647 flint = cc.find_library('flint') endif From e6d4f1abdf59c80a175d14c6a53009e1705d6bc9 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Mon, 14 Oct 2024 15:54:53 +0000 Subject: [PATCH 205/229] fix test errors due to missing sage_setup --- .github/workflows/ci-meson.yml | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index 03754b041a7..d7b4559dfa5 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -73,4 +73,7 @@ jobs: - name: Test shell: bash -l {0} - run: ./sage -t --all -p4 + run: | + # We don't install sage_setup, so don't try to test it + rm -R ./src/sage_setup/ + ./sage -t --all -p4 From 3c617362108c7d05b3ca467ceb251d0f130d9ea1 Mon Sep 17 00:00:00 2001 From: Michael Orlitzky Date: Mon, 14 Oct 2024 12:57:59 -0400 Subject: [PATCH 206/229] src/sage/libs/giac/meson.build: build extension only if libgiac is found The giac package is already marked optional, but it isn't really optional because the cython extension can't be built without libgiac. Now, the extension will be skipped if giac is absent. Recent changes in sagelib have made this feasible. --- src/sage/libs/giac/meson.build | 25 +++++++++++++------------ 1 file changed, 13 insertions(+), 12 deletions(-) diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index bee0907d368..16e22f7905b 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -4,15 +4,16 @@ py.install_sources('__init__.py', 'giac.pxd', 'misc.h', subdir: 'sage/libs/giac' extension_data_cpp = {'giac': files('giac.pyx')} -foreach name, pyx : extension_data_cpp - py.extension_module( - name, - sources: pyx, - subdir: 'sage/libs/giac', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, giac, gmp], - ) -endforeach - +if giac.found() + foreach name, pyx : extension_data_cpp + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/giac', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, giac, gmp], + ) + endforeach +endif From 0b82587e6dd1fef47eaeeb47fb3afa8bc83c9923 Mon Sep 17 00:00:00 2001 From: Michael Orlitzky Date: Mon, 14 Oct 2024 17:25:53 -0400 Subject: [PATCH 207/229] src/sage/plot/plot3d/meson.build: depend on interpreters The file parametric_surface.pyx cimports Wrapper_rdf from sage.ext.interpreters.wrapper_rdf. If the interpreters have not yet been built, the build can fail here. We split parametric_surface.pyx from the other plot3d extensions, and add the extra dependency only for the extension (parametric_surface.pyx) that needs it. --- src/sage/plot/plot3d/meson.build | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 4b8b4e23fe3..2aeef599161 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -19,7 +19,6 @@ extension_data = { 'base' : files('base.pyx'), 'implicit_surface' : files('implicit_surface.pyx'), 'index_face_set' : files('index_face_set.pyx'), - 'parametric_surface' : files('parametric_surface.pyx'), 'shapes' : files('shapes.pyx'), 'transform' : files('transform.pyx'), } @@ -35,3 +34,12 @@ foreach name, pyx : extension_data ) endforeach +# This extension needs the interpreters, but the others don't. +py.extension_module( + 'parametric_surface', + sources: files('parametric_surface.pyx'), + subdir: 'sage/plot/plot3d', + install: true, + include_directories: [inc_cpython, inc_ext, inc_numpy], + dependencies: [py_dep, cysignals, gmp, interpreters_dep], +) From 4933a6cb152029bdcc4057876791bba351023b28 Mon Sep 17 00:00:00 2001 From: Michael Orlitzky Date: Mon, 14 Oct 2024 18:04:13 -0400 Subject: [PATCH 208/229] meson.build: add "check: true" for the command that creates __init__.py Meson warns about this when the "check" keyword is absent, WARNING: You should add the boolean check kwarg to the run_command call. It currently defaults to false, but it will default to true in future releases of meson. See also: https://github.com/mesonbuild/meson/issues/9300 and the command should indeed succeed, so we now pass "check: true" to run_command(). --- meson.build | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/meson.build b/meson.build index eb2022ce528..8bf73d23d55 100644 --- a/meson.build +++ b/meson.build @@ -210,6 +210,6 @@ for path in file_paths: f.write(content) ''', ] -run_command(create_files_command) +run_command(create_files_command, check: true) subdir('src') From 8688aec94416ab7f0ebf8687d501815a12288cf5 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 03:29:34 +0000 Subject: [PATCH 209/229] fix tests --- src/sage/doctest/control.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/sage/doctest/control.py b/src/sage/doctest/control.py index ef2401e887f..4ed45e0d3e6 100644 --- a/src/sage/doctest/control.py +++ b/src/sage/doctest/control.py @@ -988,7 +988,7 @@ def expand_files_into_sources(self): sage: DC = DocTestController(DD, [dirname]) sage: DC.expand_files_into_sources() sage: len(DC.sources) - 16 + 15 sage: DC.sources[0].options.optional True @@ -1100,7 +1100,6 @@ def sort_sources(self): sage.doctest.control sage.doctest.check_tolerance sage.doctest.all - sage.doctest.__main__ sage.doctest """ if self.options.nthreads > 1 and len(self.sources) > self.options.nthreads: From 2f9a1c5ab03768858836512719aa07eead00819a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 03:56:59 +0000 Subject: [PATCH 210/229] improve dependency handling by using disabler --- src/meson.build | 14 +---- .../graphs/graph_decompositions/meson.build | 22 ++++---- src/sage/graphs/meson.build | 56 ++++++++----------- src/sage/libs/coxeter3/meson.build | 30 +++++----- src/sage/libs/giac/meson.build | 26 ++++----- src/sage/libs/meson.build | 5 +- src/sage/meson.build | 2 +- src/sage/numerical/backends/meson.build | 3 + src/sage/rings/polynomial/pbori/meson.build | 2 +- 9 files changed, 69 insertions(+), 91 deletions(-) diff --git a/src/meson.build b/src/meson.build index 44ecef27532..05a2c697d77 100644 --- a/src/meson.build +++ b/src/meson.build @@ -42,7 +42,7 @@ print(gmpy2.__file__.replace('__init__.py', '')) check: true, ).stdout().strip() gmpy2 = declare_dependency(include_directories: inc_gmpy2) -gmp = dependency('gmp', required: true) +gmp = dependency('gmp') inc_cypari2 = run_command( py, @@ -88,19 +88,14 @@ gd = cc.find_library('gd') m = cc.find_library('m') m4ri = cc.find_library('m4ri') m4rie = cc.find_library('m4rie') -mtx = cc.find_library('mtx', required: false) +mtx = cc.find_library('mtx', required: false, disabler: true) png = cc.find_library('png') zlib = cc.find_library('z') -intl = cc.find_library('intl', required: false) -curl = cc.find_library('curl') # Cannot be found via pkg-config ec = cc.find_library('ec') ecm = cc.find_library('ecm') -# Cannot be found via pkg-config -glpk = cc.find_library('glpk') ppl = cc.find_library('ppl') gmpxx = cc.find_library('gmpxx') -readline = cc.find_library('readline') fflas = dependency('fflas-ffpack') fplll = dependency('fplll') givaro = cc.find_library('givaro') @@ -108,9 +103,6 @@ linbox = dependency('linbox', required: false) if not linbox.found() linbox = cc.find_library('linbox') endif -braiding = cc.find_library('braiding') -gc = cc.find_library('gc') -homfly = cc.find_library('homfly', has_headers: ['homfly.h']) mpc = cc.find_library('mpc') mpfi = cc.find_library('mpfi') # Cannot be found via pkg-config (pkg-config file will be added in 4.13) @@ -122,7 +114,7 @@ singular = dependency('Singular') maxima = find_program('maxima', required: true) # Cannot be found via pkg-config -ntl = cc.find_library('ntl', required: true) +ntl = cc.find_library('ntl') # Meson currently ignores include_directories for Cython modules, so we # have to add them manually. diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index 3444a5a2175..f406ed566f5 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -1,4 +1,4 @@ -tdlib = cc.find_library('tdlib', required: false) +tdlib = cc.find_library('tdlib', required: false, disabler: true) # Cannot be found via pkg-config rw = cc.find_library('rw') @@ -51,15 +51,13 @@ foreach name, pyx : extension_data_cpp ) endforeach -if tdlib.found() - py.extension_module( - 'tdlib', - sources: 'tdlib.pyx', - subdir: 'sage/graphs/graph_decompositions', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_data_structures], - dependencies: [py_dep, cysignals, tdlib], - ) -endif +py.extension_module( + 'tdlib', + sources: 'tdlib.pyx', + subdir: 'sage/graphs/graph_decompositions', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures], + dependencies: [py_dep, cysignals, tdlib], +) diff --git a/src/sage/graphs/meson.build b/src/sage/graphs/meson.build index f657421d086..dbc1808f107 100644 --- a/src/sage/graphs/meson.build +++ b/src/sage/graphs/meson.build @@ -1,5 +1,5 @@ -bliss = cc.find_library('bliss', required: false) -mcqd = cc.find_library('mcqd', required: false) +bliss = cc.find_library('bliss', required: false, disabler: true) +mcqd = cc.find_library('mcqd', required: false, disabler: true) cliquer = cc.find_library('cliquer') # Cannot be found via pkg-config @@ -112,38 +112,26 @@ foreach name, pyx : extension_data_cpp dependencies: [py_dep, cysignals, flint, gmp, planarity], ) endforeach -if bliss.found() - py.extension_module( - 'bliss', - sources: files('bliss.pyx'), - subdir: 'sage/graphs', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [ - inc_cpython, - inc_data_structures, - inc_flint, - inc_rings, - ], - dependencies: [py_dep, cysignals, bliss], - ) -endif -if mcqd.found() - py.extension_module( - 'mcqd', - sources: files('mcqd.pyx'), - subdir: 'sage/graphs', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [ - inc_cpython, - inc_data_structures, - inc_flint, - inc_rings, - ], - dependencies: [py_dep, cysignals, mcqd], - ) -endif + +py.extension_module( + 'bliss', + sources: files('bliss.pyx'), + subdir: 'sage/graphs', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, bliss], +) + +py.extension_module( + 'mcqd', + sources: files('mcqd.pyx'), + subdir: 'sage/graphs', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_data_structures, inc_flint, inc_rings], + dependencies: [py_dep, cysignals, mcqd], +) subdir('base') subdir('generators') diff --git a/src/sage/libs/coxeter3/meson.build b/src/sage/libs/coxeter3/meson.build index 1db4d85d3f2..83cbd2b46cd 100644 --- a/src/sage/libs/coxeter3/meson.build +++ b/src/sage/libs/coxeter3/meson.build @@ -1,4 +1,4 @@ -coxeter3 = cc.find_library('coxeter3', required: false) +coxeter3 = cc.find_library('coxeter3', required: false, disabler: true) py.install_sources( '__init__.py', 'all__sagemath_coxeter3.py', @@ -8,20 +8,16 @@ py.install_sources( subdir: 'sage/libs/coxeter3', ) +extension_data_cpp = {'coxeter': files('coxeter.pyx')} -if coxeter3.found() - extension_data_cpp = {'coxeter': files('coxeter.pyx')} - - foreach name, pyx : extension_data_cpp - py.extension_module( - name, - sources: pyx, - subdir: 'sage/libs/coxeter3', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [], - dependencies: [py_dep, cysignals, coxeter3], - ) - endforeach -endif - +foreach name, pyx : extension_data_cpp + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/coxeter3', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [], + dependencies: [py_dep, cysignals, coxeter3], + ) +endforeach diff --git a/src/sage/libs/giac/meson.build b/src/sage/libs/giac/meson.build index 16e22f7905b..6dda5a6c8a7 100644 --- a/src/sage/libs/giac/meson.build +++ b/src/sage/libs/giac/meson.build @@ -1,19 +1,17 @@ -giac = cc.find_library('giac', required: false) +giac = cc.find_library('giac', required: false, disabler: true) py.install_sources('__init__.py', 'giac.pxd', 'misc.h', subdir: 'sage/libs/giac') extension_data_cpp = {'giac': files('giac.pyx')} -if giac.found() - foreach name, pyx : extension_data_cpp - py.extension_module( - name, - sources: pyx, - subdir: 'sage/libs/giac', - install: true, - override_options: ['cython_language=cpp'], - include_directories: [inc_cpython, inc_ext, inc_rings], - dependencies: [py_dep, cysignals, giac, gmp], - ) - endforeach -endif +foreach name, pyx : extension_data_cpp + py.extension_module( + name, + sources: pyx, + subdir: 'sage/libs/giac', + install: true, + override_options: ['cython_language=cpp'], + include_directories: [inc_cpython, inc_ext, inc_rings], + dependencies: [py_dep, cysignals, giac, gmp], + ) +endforeach diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 256d1cba075..d48e52a653b 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -1,6 +1,9 @@ -sirocco = cc.find_library('sirocco', required: false) +sirocco = cc.find_library('sirocco', required: false, disabler: true) # cannot be found via pkg-config ecl = cc.find_library('ecl') +braiding = cc.find_library('braiding') +gc = cc.find_library('gc') +homfly = cc.find_library('homfly', has_headers: ['homfly.h']) py.install_sources( 'all.py', diff --git a/src/sage/meson.build b/src/sage/meson.build index 57ca72f7b91..687ac549c10 100644 --- a/src/sage/meson.build +++ b/src/sage/meson.build @@ -31,7 +31,7 @@ conf_data.set('SAGE_ECL_CONFIG', ecl_config.full_path()) conf_data.set('SAGE_ARCHFLAGS', 'unset') # not needed when using conda, as we then don't build any pc files conf_data.set('SAGE_PKG_CONFIG_PATH', '') -openmp = dependency('openmp', required: false) +openmp = dependency('openmp', required: false, disabler: true) if openmp.found() conf_data.set('OPENMP_CFLAGS', '-fopenmp') conf_data.set('OPENMP_CXXFLAGS', '-fopenmp') diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index be85a35d250..a214543fb34 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -1,3 +1,6 @@ +# Cannot be found via pkg-config +glpk = cc.find_library('glpk') + py.install_sources( 'all.py', 'all__sagemath_polyhedra.py', diff --git a/src/sage/rings/polynomial/pbori/meson.build b/src/sage/rings/polynomial/pbori/meson.build index f0fa45e837b..c7541ae492d 100644 --- a/src/sage/rings/polynomial/pbori/meson.build +++ b/src/sage/rings/polynomial/pbori/meson.build @@ -1,4 +1,4 @@ -brial = cc.find_library('brial', required: false) +brial = cc.find_library('brial', required: false, disabler: true) # Cannot be found via pkg-config brial_groebner = cc.find_library('brial_groebner') From 26f037f9530a8f5690a3ae3e0c651192898ded85 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 03:57:17 +0000 Subject: [PATCH 211/229] add exception to update-meson helper --- tools/update-meson.py | 1 + 1 file changed, 1 insertion(+) diff --git a/tools/update-meson.py b/tools/update-meson.py index 87c8e556b37..d5b7ff2f537 100755 --- a/tools/update-meson.py +++ b/tools/update-meson.py @@ -142,6 +142,7 @@ def update_python_sources(self: Rewriter, visitor: AstPython): "tdlib.pyx", "meataxe.pyx", "sirocco.pyx", + "parametric_surface.pyx", } cython_files = [x for x in cython_files if x.name not in special_cython_files] # Add all cython files that are not in the source list From 46f490f7ceb785c341d37924805e5783cb6bdff8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 04:23:58 +0000 Subject: [PATCH 212/229] Improve handling of optional dependencies --- src/meson.build | 5 ++--- src/sage/libs/meson.build | 28 ++++++++++------------------ src/sage/matrix/meson.build | 24 +----------------------- src/sage/plot/plot3d/meson.build | 17 ++++++----------- tools/update-meson.py | 3 --- 5 files changed, 19 insertions(+), 58 deletions(-) diff --git a/src/meson.build b/src/meson.build index 05a2c697d77..12d82fa91c3 100644 --- a/src/meson.build +++ b/src/meson.build @@ -108,13 +108,12 @@ mpfi = cc.find_library('mpfi') # Cannot be found via pkg-config (pkg-config file will be added in 4.13) # Test for common.h header that was added in 4.12 as a indirect version check gap = cc.find_library('gap', has_headers: ['gap/common.h']) - singular = dependency('Singular') - maxima = find_program('maxima', required: true) - # Cannot be found via pkg-config ntl = cc.find_library('ntl') +# Cannot be found via pkg-config +meataxe = cc.find_library('meataxe', required: false, disabler: true) # Meson currently ignores include_directories for Cython modules, so we # have to add them manually. diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index d48e52a653b..068dad4df28 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -17,7 +17,6 @@ py.install_sources( 'iml.pxd', 'm4ri.pxd', 'm4rie.pxd', - 'meataxe.pxd', subdir: 'sage/libs', ) @@ -25,27 +24,20 @@ extension_data = { 'ecl' : files('ecl.pyx'), 'homfly' : files('homfly.pyx'), 'libecm' : files('libecm.pyx'), + 'sirocco': files('sirocco.pyx'), + 'meataxe': files('meataxe.pxd', 'meataxe.pyx'), } -dependencies = [ - py_dep, - braiding, - cysignals, - ecl, - ecm, - gc, - gmp, - homfly, - mtx, - sirocco, -] - -if sirocco.found() - extension_data += {'sirocco': files('sirocco.pxd', 'sirocco.pyx')} - dependencies += [sirocco] -endif +dependencies = [py_dep, braiding, cysignals, ecl, ecm, gc, gmp, homfly] foreach name, pyx : extension_data + deps = dependencies + if name == 'sirocco' + deps += [sirocco] + elif name == 'meataxe' + deps += [mtx, meataxe] + endif + py.extension_module( name, sources: pyx, diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index 7a60938775f..d1f21741fad 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -1,25 +1,5 @@ -# Cannot be found via pkg-config -meataxe = cc.find_library('meataxe', required: false, disabler: true) iml = cc.find_library('iml') -if meataxe.found() - py.install_sources( - 'all.py', - 'all__sagemath_meataxe.py', - 'benchmark.py', - 'berlekamp_massey.py', - 'compute_J_ideal.py', - 'docs.py', - 'matrix_integer_dense_hnf.py', - 'matrix_integer_dense_saturation.py', - 'matrix_misc.py', - 'matrix_space.py', - 'operation_table.py', - 'special.py', - 'symplectic_basis.py', - 'tests.py', - ) -endif py.install_sources( 'all.py', @@ -95,14 +75,13 @@ foreach name, pyx : extension_data m4rie, mpfi, mpfr, - mtx, ntl, pari, png, zlib, ] if name == 'matrix_gfpn_dense' - dependencies += [meataxe] + dependencies += [mtx, meataxe] endif py.extension_module( @@ -170,7 +149,6 @@ foreach name, pyx : extension_data_cpp m4rie, mpfi, mpfr, - mtx, ntl, pari, png, diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 2aeef599161..15938b119e7 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -21,25 +21,20 @@ extension_data = { 'index_face_set' : files('index_face_set.pyx'), 'shapes' : files('shapes.pyx'), 'transform' : files('transform.pyx'), + 'parametric_surface' : files('parametric_surface.pyx'), } foreach name, pyx : extension_data + dependencies = [py_dep, cysignals, gmp] + if name == 'parametric_surface' + dependencies += [interpreters_dep] + endif py.extension_module( name, sources: pyx, subdir: 'sage/plot/plot3d', install: true, include_directories: [inc_cpython, inc_ext, inc_numpy], - dependencies: [py_dep, cysignals, gmp], + dependencies: dependencies, ) endforeach - -# This extension needs the interpreters, but the others don't. -py.extension_module( - 'parametric_surface', - sources: files('parametric_surface.pyx'), - subdir: 'sage/plot/plot3d', - install: true, - include_directories: [inc_cpython, inc_ext, inc_numpy], - dependencies: [py_dep, cysignals, gmp, interpreters_dep], -) diff --git a/tools/update-meson.py b/tools/update-meson.py index d5b7ff2f537..3f918b3361d 100755 --- a/tools/update-meson.py +++ b/tools/update-meson.py @@ -140,9 +140,6 @@ def update_python_sources(self: Rewriter, visitor: AstPython): "bliss.pyx", "mcqd.pyx", "tdlib.pyx", - "meataxe.pyx", - "sirocco.pyx", - "parametric_surface.pyx", } cython_files = [x for x in cython_files if x.name not in special_cython_files] # Add all cython files that are not in the source list From f9ba8d40c87a53bf90c8db9c0cd1c9100692ddc8 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 04:34:27 +0000 Subject: [PATCH 213/229] fix build --- src/sage/libs/meson.build | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/sage/libs/meson.build b/src/sage/libs/meson.build index 068dad4df28..61b36da51f5 100644 --- a/src/sage/libs/meson.build +++ b/src/sage/libs/meson.build @@ -17,6 +17,7 @@ py.install_sources( 'iml.pxd', 'm4ri.pxd', 'm4rie.pxd', + 'meataxe.pxd', subdir: 'sage/libs', ) @@ -25,7 +26,7 @@ extension_data = { 'homfly' : files('homfly.pyx'), 'libecm' : files('libecm.pyx'), 'sirocco': files('sirocco.pyx'), - 'meataxe': files('meataxe.pxd', 'meataxe.pyx'), + 'meataxe': files('meataxe.pyx'), } dependencies = [py_dep, braiding, cysignals, ecl, ecm, gc, gmp, homfly] @@ -44,7 +45,7 @@ foreach name, pyx : extension_data subdir: 'sage/libs', install: true, include_directories: [inc_cpython, inc_rings], - dependencies: dependencies, + dependencies: deps, ) endforeach From 43bb980ed3b6cd1b9bf5050e3cda03f888b76858 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 04:34:45 +0000 Subject: [PATCH 214/229] try to fix doctests of sage_setup --- src/sage_setup/autogen/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sage_setup/autogen/__init__.py b/src/sage_setup/autogen/__init__.py index cde2037fdd3..fed1b8608d1 100644 --- a/src/sage_setup/autogen/__init__.py +++ b/src/sage_setup/autogen/__init__.py @@ -1,6 +1,6 @@ import os -from .interpreters.internal import rebuild +from interpreters.internal import rebuild def autogen_all(): From 45dabec4a9895b2e0b086c9bb189de22afb06f79 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 04:46:25 +0000 Subject: [PATCH 215/229] try with absolute import --- src/sage_setup/autogen/__init__.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/sage_setup/autogen/__init__.py b/src/sage_setup/autogen/__init__.py index fed1b8608d1..2ec85acde21 100644 --- a/src/sage_setup/autogen/__init__.py +++ b/src/sage_setup/autogen/__init__.py @@ -1,6 +1,6 @@ import os -from interpreters.internal import rebuild +from sage_setup.autogen.interpreters.internal import rebuild def autogen_all(): @@ -11,6 +11,7 @@ def autogen_all(): of packages built/installed by setup.py. """ from sage.env import SAGE_SRC + rebuild(os.path.join(SAGE_SRC, "sage", "ext", "interpreters")) - return ['sage.ext.interpreters'] + return ["sage.ext.interpreters"] From e57348d50394255776ccc34f9f26fbc655ea37eb Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 05:23:12 +0000 Subject: [PATCH 216/229] try to add interpreters.internal to sage-setup/pyproject.toml --- pkgs/sage-setup/pyproject.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/pkgs/sage-setup/pyproject.toml b/pkgs/sage-setup/pyproject.toml index 3744f5ce5ac..a8cac2c6a64 100644 --- a/pkgs/sage-setup/pyproject.toml +++ b/pkgs/sage-setup/pyproject.toml @@ -39,6 +39,7 @@ packages = [ "sage_setup", "sage_setup.autogen", "sage_setup.autogen.interpreters", + "sage_setup.autogen.interpreters.internal", "sage_setup.autogen.interpreters.internal.specs", "sage_setup.command", ] From ef630f7c2d6ce5871367c04e140ac905e7cfc8c3 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Tue, 15 Oct 2024 05:58:31 +0000 Subject: [PATCH 217/229] fix more autogen tests --- src/sage_setup/autogen/interpreters/internal/storage.py | 2 +- src/sage_setup/autogen/interpreters/internal/utils.py | 6 +++--- 2 files changed, 4 insertions(+), 4 deletions(-) diff --git a/src/sage_setup/autogen/interpreters/internal/storage.py b/src/sage_setup/autogen/interpreters/internal/storage.py index 5c956cbde60..ce77abbe586 100644 --- a/src/sage_setup/autogen/interpreters/internal/storage.py +++ b/src/sage_setup/autogen/interpreters/internal/storage.py @@ -456,7 +456,7 @@ class StorageTypeDoubleComplex(StorageTypeSimple): """ def assign_c_from_py(self, c, py): """ - sage: from sage_setup.autogen.interpreters import ty_double_complex + sage: from sage_setup.autogen.interpreters.internal import ty_double_complex sage: ty_double_complex.assign_c_from_py('z_c', 'z_py') 'z_c = CDE_to_dz(z_py)' """ diff --git a/src/sage_setup/autogen/interpreters/internal/utils.py b/src/sage_setup/autogen/interpreters/internal/utils.py index f2471257a7d..247243ef644 100644 --- a/src/sage_setup/autogen/interpreters/internal/utils.py +++ b/src/sage_setup/autogen/interpreters/internal/utils.py @@ -50,7 +50,7 @@ def je(template, **kwargs): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import je + sage: from sage_setup.autogen.interpreters.internal import je sage: je("{{ a }} > {{ b }} * {{ c }}", a='"a suffusion of yellow"', b=3, c=7) '"a suffusion of yellow" > 3 * 7' """ @@ -76,7 +76,7 @@ def indent_lines(n, text): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import indent_lines + sage: from sage_setup.autogen.interpreters.internal import indent_lines sage: indent_lines(3, "foo") ' foo' sage: indent_lines(3, "foo\nbar") @@ -102,7 +102,7 @@ def reindent_lines(n, text): EXAMPLES:: - sage: from sage_setup.autogen.interpreters import reindent_lines + sage: from sage_setup.autogen.interpreters.internal import reindent_lines sage: print(reindent_lines(3, " foo\n bar")) foo bar From 43c6952d89bc91c305ee04f84369cb0a9c67515b Mon Sep 17 00:00:00 2001 From: Dima Pasechnik Date: Tue, 15 Oct 2024 18:16:42 +0100 Subject: [PATCH 218/229] add -D_XOPEN_SOURCE=600 to the right place --- src/sage/stats/distributions/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index 9297d33a139..59f2387765a 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -19,6 +19,7 @@ foreach name, pyx : extension_data py.extension_module( name, sources: pyx, + c_args: ['-D_XOPEN_SOURCE=600'], subdir: 'sage/stats/distributions', install: true, include_directories: [inc_cpython, inc_rings, inc_src], From 233d350943ad19a7aa1ac22b6a91a3121ad83c68 Mon Sep 17 00:00:00 2001 From: Dima Pasechnik Date: Wed, 16 Oct 2024 10:54:22 +0100 Subject: [PATCH 219/229] use newer action --- .github/workflows/ci-meson.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-meson.yml b/.github/workflows/ci-meson.yml index d7b4559dfa5..3ecccb4c16c 100644 --- a/.github/workflows/ci-meson.yml +++ b/.github/workflows/ci-meson.yml @@ -35,7 +35,7 @@ jobs: GH_TOKEN: ${{ github.token }} - name: Cache conda packages - uses: actions/cache@v3 + uses: actions/cache@v4 with: path: ~/conda_pkgs_dir key: From 658b25af9f237b3b431b4250e5529c50d81c0e05 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 17 Oct 2024 06:25:21 +0000 Subject: [PATCH 220/229] Try to fix interpreters compilation --- src/doc/en/installation/meson.rst | 2 + src/sage/ext/interpreters/meson.build | 78 +++---------------- src/sage/stats/distributions/meson.build | 1 - .../autogen/interpreters/internal/specs/cc.py | 2 - .../interpreters/internal/specs/cdf.py | 1 - .../interpreters/internal/specs/element.py | 2 - .../autogen/interpreters/internal/specs/rr.py | 2 - 7 files changed, 13 insertions(+), 75 deletions(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index 866a6a2284a..dd1d24599d5 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -33,6 +33,8 @@ to the installed libraries: If you have previously build Sage in-place, you first have to delete the already compiled files, e.g. with ``shopt -s globstar`` followed by ``rm src/**/*.so`` or ``for f in src/**/*.so ; do mv "$f" "$f.old"; done``. + Moreover, remove the old generated files with + ``find src/sage/ext/interpreters -type f ! -name 'meson.build' -delete``. Also uninstall the 'old' sage packages with ``pip uninstall sage-conf sage-setup sagemath-standard``. To compile and install the project in editable install, just use:: diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index f2f18b3842f..c447102ba50 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -10,11 +10,17 @@ interpreters = custom_target( 'wrapper_rdf.pxd', 'wrapper_rr.pxd', 'wrapper_cc.pyx', + 'interp_cc.c', 'wrapper_cdf.pyx', + 'interp_cdf.c', 'wrapper_el.pyx', + 'interp_el.c', 'wrapper_py.pyx', + 'interp_py.c', 'wrapper_rdf.pyx', + 'interp_rdf.c', 'wrapper_rr.pyx', + 'interp_rr.c', '__init__.py', ], input: '../../../sage_setup/autogen/interpreters/internal/__init__.py', @@ -36,78 +42,17 @@ interpreters = custom_target( extension_data = { 'wrapper_cc' : interpreters[7], - 'wrapper_cdf' : interpreters[8], - 'wrapper_el' : interpreters[9], - 'wrapper_py' : interpreters[10], - 'wrapper_rdf' : interpreters[11], - 'wrapper_rr' : interpreters[12], + 'wrapper_cdf' : interpreters[9], + 'wrapper_el' : interpreters[11], + 'wrapper_py' : interpreters[13], + 'wrapper_rdf' : interpreters[15], + 'wrapper_rr' : interpreters[17], } -# Manually create header files, which otherwise are not found -wrapper_el_header = custom_target( - 'wrapper_el.h', - output: 'wrapper_el.h', - input: [interpreters[9], interpreters], - command: [ - cython.cmd_array(), - '@INPUT0@', - '-o', - '@OUTPUT@', - '-I', - join_paths(meson.current_source_dir(), '../../../'), - ], -) -wrapper_cc_header = custom_target( - 'wrapper_cc.h', - output: 'wrapper_cc.h', - input: [interpreters[7], interpreters], - command: [ - cython.cmd_array(), - '@INPUT0@', - '-o', - '@OUTPUT@', - '-I', - join_paths(meson.current_source_dir(), '../../../'), - ], -) -wrapper_cdf_header = custom_target( - 'wrapper_cdf.h', - output: 'wrapper_cdf.h', - input: [interpreters[8], interpreters], - command: [ - cython.cmd_array(), - '@INPUT0@', - '-o', - '@OUTPUT@', - '-I', - join_paths(meson.current_source_dir(), '../../../'), - ], -) -wrapper_rr_header = custom_target( - 'wrapper_rr.h', - output: 'wrapper_rr.h', - input: [interpreters[12], interpreters], - command: [ - cython.cmd_array(), - '@INPUT0@', - '-o', - '@OUTPUT@', - '-I', - join_paths(meson.current_source_dir(), '../../../'), - ], -) - interpreters_dep = declare_dependency( - sources: [ - wrapper_el_header, - wrapper_cc_header, - wrapper_cdf_header, - wrapper_rr_header, - ], include_directories: include_directories('.'), ) - foreach name, pyx : extension_data py.extension_module( name, @@ -124,7 +69,6 @@ foreach name, pyx : extension_data mpc, mpfr, pari, - interpreters_dep, ], ) endforeach diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index 59f2387765a..9297d33a139 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -19,7 +19,6 @@ foreach name, pyx : extension_data py.extension_module( name, sources: pyx, - c_args: ['-D_XOPEN_SOURCE=600'], subdir: 'sage/stats/distributions', install: true, include_directories: [inc_cpython, inc_rings, inc_src], diff --git a/src/sage_setup/autogen/interpreters/internal/specs/cc.py b/src/sage_setup/autogen/interpreters/internal/specs/cc.py index f6ac4b48c7e..cc42a6defab 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/cc.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/cc.py @@ -149,7 +149,6 @@ def __init__(self): sage: print(interp.c_header) #include - #include "wrapper_cc.h" So instructions where you need to interact with Python can @@ -171,7 +170,6 @@ def __init__(self): self.c_header = ri(0, ''' #include - #include "wrapper_cc.h" ''') self.pxd_header = ri(0, diff --git a/src/sage_setup/autogen/interpreters/internal/specs/cdf.py b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py index d59c9959ba1..1edc1f7abe3 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/cdf.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/cdf.py @@ -85,7 +85,6 @@ def __init__(self): self.c_header = ri(0,""" #include #include - #include "wrapper_cdf.h" /* On Solaris, we need to define _Imaginary_I when compiling with GCC, * otherwise the constant I doesn't work. The definition below is based diff --git a/src/sage_setup/autogen/interpreters/internal/specs/element.py b/src/sage_setup/autogen/interpreters/internal/specs/element.py index bb4276793c6..5dc7c6592c9 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/element.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/element.py @@ -105,8 +105,6 @@ def __init__(self): self.chunks = [self.mc_args, self.mc_constants, self.mc_stack, self.mc_domain_info, self.mc_code] self.c_header = ri(0, """ - #include "wrapper_el.h" - #define CHECK(x) do_check(&(x), domain) static inline int do_check(PyObject **x, PyObject *domain) { diff --git a/src/sage_setup/autogen/interpreters/internal/specs/rr.py b/src/sage_setup/autogen/interpreters/internal/specs/rr.py index a589f2f5de7..e51262d6196 100644 --- a/src/sage_setup/autogen/interpreters/internal/specs/rr.py +++ b/src/sage_setup/autogen/interpreters/internal/specs/rr.py @@ -148,7 +148,6 @@ def __init__(self): sage: print(interp.c_header) #include - #include "wrapper_rr.h" The function ``rr_py_call_helper`` is implemented in Cython:: @@ -188,7 +187,6 @@ def __init__(self): self.c_header = ri(0, ''' #include - #include "wrapper_rr.h" ''') self.pxd_header = ri(0, From e39a1302a3e8fa6af9b2771d2d751378fb39e863 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 17 Oct 2024 06:47:22 +0000 Subject: [PATCH 221/229] improve docs --- src/doc/en/installation/meson.rst | 41 ++++++++++++++++--------------- 1 file changed, 21 insertions(+), 20 deletions(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index dd1d24599d5..3b8f9b98ece 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -11,22 +11,23 @@ Walkthrough Assume we're starting from a clean repo and a fully set up conda environment:: - ```bash +.. code-block:: shell + ./bootstrap-conda mamba env create --file src/environment-dev-3.11.yml --name sage-dev conda activate sage-dev - ``` Alternatively, install all build requirements as described in section :ref:`section-prereqs`. In the likely case that you have to install some dependencies manually, set the correct environment variables to point to the installed libraries: - ```bash +.. code-block:: shell + export C_INCLUDE_PATH=$C_INCLUDE_PATH:/your/path/to/include export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/your/path/to/include export LIBRARY_PATH=$LIBRARY_PATH:/your/path/to/lib - ``` + .. NOTE:: @@ -39,12 +40,12 @@ to the installed libraries: To compile and install the project in editable install, just use:: - ```bash +.. code-block:: shell + pip install --no-build-isolation --editable . - ``` This will install Sage in the current Python environment. -In a Conda environment, the ̀ `--no-build-isolation` flag is necessary to +In a Conda environment, the ``--no-build-isolation`` flag is necessary to allow the build system to reuse the already installed build dependencies. If you don't use Conda, you can omit this flag. @@ -73,37 +74,37 @@ We can also use meson directly as follows. To configure the project, we need to run the following command:: - ```bash +.. code-block:: shell + meson setup builddir --prefix=$PWD/build-install - ``` This will create a build directory ``builddir`` that will hold the build artifacts. The ``--prefix`` option specifies the directory where the Sage will be installed. To compile the project, run the following command:: - ```bash +.. code-block:: shell + meson compile -C builddir - ``` Installing is done with the following command:: - ```bash +.. code-block:: shell + meson install -C builddir - ``` This will then install in the directory specified by ``--prefix``, e.g. -`build-install/lib/python3.11/site-packages/sage`. +``build-install/lib/python3.11/site-packages/sage``. Usually, this directory is not on your Python path, so you have to use:: - ```bash +.. code-block:: shell + PYTHONPATH=build-install/lib/python3.11/site-packages ./sage - ``` Alternatively, we can still use pip to install:: - ```bash +.. code-block:: shell + pip install --no-build-isolation --config-settings=builddir=builddir --editable . - ``` .. tip:: @@ -111,11 +112,11 @@ Alternatively, we can still use pip to install:: to install to a different directory than the install prefix. Both are supported naturally by Meson:: - ```bash + .. code-block:: shell + meson setup builddir --prefix=/usr --libdir=... -Dcpp_args=... meson compile -C builddir DESTDIR=/path/to/staging/root meson install -C builddir - ``` See `Meson's quick guide `_ and `Meson's install guide `_ From cad225374ea469da31d4a69fb9cf37496f804b6e Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 17 Oct 2024 07:37:12 +0000 Subject: [PATCH 222/229] Readd D_XOPEN_SOURCE c_arg --- src/sage/stats/distributions/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index 9297d33a139..59f2387765a 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -19,6 +19,7 @@ foreach name, pyx : extension_data py.extension_module( name, sources: pyx, + c_args: ['-D_XOPEN_SOURCE=600'], subdir: 'sage/stats/distributions', install: true, include_directories: [inc_cpython, inc_rings, inc_src], From 2297338aa60f84c4ebc6951ca7ad9f4f00e2a0e9 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Thu, 17 Oct 2024 08:08:36 +0000 Subject: [PATCH 223/229] Fix wonderful rst syntax (maybe) --- src/doc/en/installation/meson.rst | 31 +++++++++++++++---------------- 1 file changed, 15 insertions(+), 16 deletions(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index 3b8f9b98ece..3cdbc9aadf7 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -13,9 +13,9 @@ Assume we're starting from a clean repo and a fully set up conda environment:: .. code-block:: shell - ./bootstrap-conda - mamba env create --file src/environment-dev-3.11.yml --name sage-dev - conda activate sage-dev + $ ./bootstrap-conda + $ mamba env create --file src/environment-dev-3.11.yml --name sage-dev + $ conda activate sage-dev Alternatively, install all build requirements as described in section :ref:`section-prereqs`. In the likely case that you have to install some @@ -24,10 +24,9 @@ to the installed libraries: .. code-block:: shell - export C_INCLUDE_PATH=$C_INCLUDE_PATH:/your/path/to/include - export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/your/path/to/include - export LIBRARY_PATH=$LIBRARY_PATH:/your/path/to/lib - + $ export C_INCLUDE_PATH=$C_INCLUDE_PATH:/your/path/to/include + $ export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/your/path/to/include + $ export LIBRARY_PATH=$LIBRARY_PATH:/your/path/to/lib .. NOTE:: @@ -42,7 +41,7 @@ To compile and install the project in editable install, just use:: .. code-block:: shell - pip install --no-build-isolation --editable . + $ pip install --no-build-isolation --editable . This will install Sage in the current Python environment. In a Conda environment, the ``--no-build-isolation`` flag is necessary to @@ -76,7 +75,7 @@ To configure the project, we need to run the following command:: .. code-block:: shell - meson setup builddir --prefix=$PWD/build-install + $ meson setup builddir --prefix=$PWD/build-install This will create a build directory ``builddir`` that will hold the build artifacts. The ``--prefix`` option specifies the directory where the Sage will be installed. @@ -84,13 +83,13 @@ To compile the project, run the following command:: .. code-block:: shell - meson compile -C builddir + $ meson compile -C builddir Installing is done with the following command:: .. code-block:: shell - meson install -C builddir + $ meson install -C builddir This will then install in the directory specified by ``--prefix``, e.g. ``build-install/lib/python3.11/site-packages/sage``. @@ -98,13 +97,13 @@ Usually, this directory is not on your Python path, so you have to use:: .. code-block:: shell - PYTHONPATH=build-install/lib/python3.11/site-packages ./sage + $ PYTHONPATH=build-install/lib/python3.11/site-packages ./sage Alternatively, we can still use pip to install:: .. code-block:: shell - pip install --no-build-isolation --config-settings=builddir=builddir --editable . + $ pip install --no-build-isolation --config-settings=builddir=builddir --editable . .. tip:: @@ -114,9 +113,9 @@ Alternatively, we can still use pip to install:: .. code-block:: shell - meson setup builddir --prefix=/usr --libdir=... -Dcpp_args=... - meson compile -C builddir - DESTDIR=/path/to/staging/root meson install -C builddir + $ meson setup builddir --prefix=/usr --libdir=... -Dcpp_args=... + $ meson compile -C builddir + $ DESTDIR=/path/to/staging/root meson install -C builddir See `Meson's quick guide `_ and `Meson's install guide `_ From 93be190621b2e027c10e7f902b68ae3be863ac3a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 18 Oct 2024 08:07:34 +0000 Subject: [PATCH 224/229] fix documentation --- src/doc/en/installation/meson.rst | 34 +++++++++++++++---------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/src/doc/en/installation/meson.rst b/src/doc/en/installation/meson.rst index 3cdbc9aadf7..b8e44bc12fc 100644 --- a/src/doc/en/installation/meson.rst +++ b/src/doc/en/installation/meson.rst @@ -9,9 +9,9 @@ This is a short guide on how to build the Sage from source using Meson. Walkthrough =========== -Assume we're starting from a clean repo and a fully set up conda environment:: +Assume we're starting from a clean repo and a fully set up conda environment: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ ./bootstrap-conda $ mamba env create --file src/environment-dev-3.11.yml --name sage-dev @@ -22,7 +22,7 @@ Alternatively, install all build requirements as described in section dependencies manually, set the correct environment variables to point to the installed libraries: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ export C_INCLUDE_PATH=$C_INCLUDE_PATH:/your/path/to/include $ export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/your/path/to/include @@ -37,9 +37,9 @@ to the installed libraries: ``find src/sage/ext/interpreters -type f ! -name 'meson.build' -delete``. Also uninstall the 'old' sage packages with ``pip uninstall sage-conf sage-setup sagemath-standard``. -To compile and install the project in editable install, just use:: +To compile and install the project in editable install, just use: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ pip install --no-build-isolation --editable . @@ -71,37 +71,37 @@ Background information Under the hood, pip invokes meson to configure and build the project. We can also use meson directly as follows. -To configure the project, we need to run the following command:: +To configure the project, we need to run the following command: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ meson setup builddir --prefix=$PWD/build-install This will create a build directory ``builddir`` that will hold the build artifacts. The ``--prefix`` option specifies the directory where the Sage will be installed. -To compile the project, run the following command:: +To compile the project, run the following command: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ meson compile -C builddir -Installing is done with the following command:: +Installing is done with the following command: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ meson install -C builddir This will then install in the directory specified by ``--prefix``, e.g. ``build-install/lib/python3.11/site-packages/sage``. -Usually, this directory is not on your Python path, so you have to use:: +Usually, this directory is not on your Python path, so you have to use: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ PYTHONPATH=build-install/lib/python3.11/site-packages ./sage -Alternatively, we can still use pip to install:: +Alternatively, we can still use pip to install: -.. code-block:: shell +.. CODE-BLOCK:: shell-session $ pip install --no-build-isolation --config-settings=builddir=builddir --editable . @@ -109,9 +109,9 @@ Alternatively, we can still use pip to install:: Package maintainers may want to specify further build options or need to install to a different directory than the install prefix. - Both are supported naturally by Meson:: + Both are supported naturally by Meson: - .. code-block:: shell + .. CODE-BLOCK:: shell-session $ meson setup builddir --prefix=/usr --libdir=... -Dcpp_args=... $ meson compile -C builddir From a980b66eeeac2a8003df539144d0818bb95a1784 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 18 Oct 2024 08:15:04 +0000 Subject: [PATCH 225/229] Add more optional tags for database_graphs --- src/sage/graphs/generators/distance_regular.pyx | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/src/sage/graphs/generators/distance_regular.pyx b/src/sage/graphs/generators/distance_regular.pyx index 795bfa58dc2..4a4c17b6ce0 100644 --- a/src/sage/graphs/generators/distance_regular.pyx +++ b/src/sage/graphs/generators/distance_regular.pyx @@ -1423,14 +1423,14 @@ def GeneralisedOctagonGraph(const int s, const int t): EXAMPLES:: sage: # needs sage.libs.gap - sage: G = graphs.GeneralisedOctagonGraph(1, 4) - sage: G.is_distance_regular(True) + sage: G = graphs.GeneralisedOctagonGraph(1, 4) # optional - database_graphs + sage: G.is_distance_regular(True) # optional - database_graphs ([5, 4, 4, 4, None], [None, 1, 1, 1, 5]) sage: G = graphs.GeneralisedOctagonGraph(2, 4) # optional - gap_package_atlasrep internet sage: G.is_distance_regular(True) # optional - gap_package_atlasrep internet ([10, 8, 8, 8, None], [None, 1, 1, 1, 5]) - sage: G = graphs.GeneralisedOctagonGraph(5, 1) - sage: G.is_distance_regular(True) + sage: G = graphs.GeneralisedOctagonGraph(5, 1) # optional - database_graphs + sage: G.is_distance_regular(True) # optional - database_graphs ([10, 5, 5, 5, None], [None, 1, 1, 1, 2]) .. NOTE:: @@ -2741,7 +2741,7 @@ def distance_regular_graph(list arr, existence=False, check=True): Hamming Graph with parameters 7,3: Graph on 2187 vertices sage: graphs.distance_regular_graph([66, 45, 28, 1, 6, 30]) Graph on 1024 vertices - sage: graphs.distance_regular_graph([6,5,5,5,1,1,1,6]) + sage: graphs.distance_regular_graph([6,5,5,5,1,1,1,6]) # optional - database_graphs Generalised octagon of order (1, 5): Graph on 312 vertices sage: graphs.distance_regular_graph([64, 60, 1, 1, 15, 64], check=True) Graph on 325 vertices From d912171d11be3b5c45a8b3f8b4368c15600f3c5a Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 18 Oct 2024 08:25:18 +0000 Subject: [PATCH 226/229] properly copy sage.gaprc --- src/sage/libs/gap/meson.build | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index 5066020abee..6aa20021839 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -8,7 +8,6 @@ py.install_sources( 'gap_globals.py', 'gap_includes.pxd', 'operations.py', - 'sage.gaprc', 'saved_workspace.py', 'test.py', 'test_long.py', @@ -16,6 +15,8 @@ py.install_sources( subdir: 'sage/libs/gap', ) +fs.copyfile('sage.gaprc') + extension_data = { 'element' : files('element.pyx'), 'libgap' : files('libgap.pyx'), From bc5af680be8403b3df259dbb4c5d2ba82bf58e40 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 18 Oct 2024 08:40:46 +0000 Subject: [PATCH 227/229] fix interpreters dependency by specifying generated headers as source --- src/sage/ext/interpreters/meson.build | 1 + 1 file changed, 1 insertion(+) diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index c447102ba50..e66a9d405bc 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -51,6 +51,7 @@ extension_data = { interpreters_dep = declare_dependency( include_directories: include_directories('.'), + sources: [interpreters[1], interpreters[2], interpreters[3], interpreters[4], interpreters[5]], ) foreach name, pyx : extension_data From 7533a4e058c03d3a5440f920062346f94eb0149d Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Fri, 18 Oct 2024 13:58:38 +0000 Subject: [PATCH 228/229] Fix installation of sage.gaprc --- src/sage/libs/gap/meson.build | 2 ++ 1 file changed, 2 insertions(+) diff --git a/src/sage/libs/gap/meson.build b/src/sage/libs/gap/meson.build index 6aa20021839..2302a169cb2 100644 --- a/src/sage/libs/gap/meson.build +++ b/src/sage/libs/gap/meson.build @@ -8,6 +8,7 @@ py.install_sources( 'gap_globals.py', 'gap_includes.pxd', 'operations.py', + 'sage.gaprc', 'saved_workspace.py', 'test.py', 'test_long.py', @@ -15,6 +16,7 @@ py.install_sources( subdir: 'sage/libs/gap', ) +# Ensure that the gaprc file is installed also in editable mode fs.copyfile('sage.gaprc') extension_data = { From 2bf9a090bcaaf1297e172b15469f1332905e5552 Mon Sep 17 00:00:00 2001 From: Tobias Diez Date: Sat, 19 Oct 2024 01:56:40 +0000 Subject: [PATCH 229/229] add all pxd files --- src/sage/combinat/crystals/meson.build | 4 + src/sage/combinat/integer_lists/meson.build | 2 + src/sage/combinat/meson.build | 3 + .../rigged_configurations/meson.build | 1 + src/sage/combinat/root_system/meson.build | 1 + src/sage/combinat/words/meson.build | 1 + src/sage/crypto/meson.build | 1 + src/sage/ext/interpreters/meson.build | 19 ++- .../combinatorial_polyhedron/meson.build | 8 ++ src/sage/geometry/triangulation/meson.build | 3 + .../graphs/graph_decompositions/meson.build | 1 + src/sage/groups/matrix_gps/meson.build | 2 + src/sage/groups/perm_gps/meson.build | 1 + .../groups/perm_gps/partn_ref/meson.build | 15 ++- .../groups/perm_gps/partn_ref2/meson.build | 6 +- .../semimonomial_transformations/meson.build | 1 + src/sage/interfaces/meson.build | 1 + src/sage/libs/eclib/meson.build | 1 + src/sage/libs/flint/meson.build | 119 ++++++++++++++++++ src/sage/libs/mpmath/meson.build | 2 + src/sage/matrix/meson.build | 39 ++++++ src/sage/matroids/meson.build | 12 ++ src/sage/modular/meson.build | 1 + src/sage/modular/modsym/meson.build | 3 + src/sage/modular/pollack_stevens/meson.build | 1 + src/sage/modules/meson.build | 15 +++ src/sage/modules/with_basis/meson.build | 1 + src/sage/monoids/meson.build | 1 + src/sage/numerical/backends/meson.build | 9 ++ src/sage/numerical/meson.build | 4 + src/sage/plot/plot3d/meson.build | 5 + src/sage/quivers/meson.build | 2 + src/sage/sat/solvers/meson.build | 1 + src/sage/stats/distributions/meson.build | 2 + src/sage/stats/hmm/meson.build | 8 +- src/sage/stats/meson.build | 9 +- tools/update-meson.py | 2 +- 37 files changed, 291 insertions(+), 16 deletions(-) diff --git a/src/sage/combinat/crystals/meson.build b/src/sage/combinat/crystals/meson.build index e3605ed31b3..96ff9f4e19e 100644 --- a/src/sage/combinat/crystals/meson.build +++ b/src/sage/combinat/crystals/meson.build @@ -21,15 +21,19 @@ py.install_sources( 'kac_modules.py', 'kirillov_reshetikhin.py', 'kyoto_path_model.py', + 'letters.pxd', 'littelmann_path.py', 'monomial_crystals.py', 'multisegments.py', 'mv_polytopes.py', 'pbw_crystal.py', + 'pbw_datum.pxd', 'polyhedral_realization.py', + 'spins.pxd', 'star_crystal.py', 'subcrystal.py', 'tensor_product.py', + 'tensor_product_element.pxd', 'virtual_crystal.py', subdir: 'sage/combinat/crystals', ) diff --git a/src/sage/combinat/integer_lists/meson.build b/src/sage/combinat/integer_lists/meson.build index ec0c5a3084b..ac9aab23386 100644 --- a/src/sage/combinat/integer_lists/meson.build +++ b/src/sage/combinat/integer_lists/meson.build @@ -1,5 +1,7 @@ py.install_sources( '__init__.py', + 'base.pxd', + 'invlex.pxd', 'lists.py', 'nn.py', subdir: 'sage/combinat/integer_lists', diff --git a/src/sage/combinat/meson.build b/src/sage/combinat/meson.build index 5ef2dcb5d08..c0e9fe15d8b 100644 --- a/src/sage/combinat/meson.build +++ b/src/sage/combinat/meson.build @@ -16,6 +16,7 @@ py.install_sources( 'cluster_complex.py', 'colored_permutations.py', 'combinat.py', + 'combinat_cython.pxd', 'combination.py', 'combinatorial_map.py', 'composition.py', @@ -34,6 +35,7 @@ py.install_sources( 'dyck_word.py', 'e_one_star.py', 'enumerated_sets.py', + 'enumeration_mod_permgroup.pxd', 'family.py', 'finite_state_machine.py', 'finite_state_machine_generators.py', @@ -77,6 +79,7 @@ py.install_sources( 'partition_tuple.py', 'perfect_matching.py', 'permutation.py', + 'permutation_cython.pxd', 'plane_partition.py', 'q_analogues.py', 'quickref.py', diff --git a/src/sage/combinat/rigged_configurations/meson.build b/src/sage/combinat/rigged_configurations/meson.build index 0426d96e63a..6b12159dfda 100644 --- a/src/sage/combinat/rigged_configurations/meson.build +++ b/src/sage/combinat/rigged_configurations/meson.build @@ -19,6 +19,7 @@ py.install_sources( 'rc_infinity.py', 'rigged_configuration_element.py', 'rigged_configurations.py', + 'rigged_partition.pxd', 'tensor_product_kr_tableaux.py', 'tensor_product_kr_tableaux_element.py', subdir: 'sage/combinat/rigged_configurations', diff --git a/src/sage/combinat/root_system/meson.build b/src/sage/combinat/root_system/meson.build index b768fed5f8a..a8827403c7e 100644 --- a/src/sage/combinat/root_system/meson.build +++ b/src/sage/combinat/root_system/meson.build @@ -18,6 +18,7 @@ py.install_sources( 'pieri_factors.py', 'plot.py', 'reflection_group_complex.py', + 'reflection_group_element.pxd', 'reflection_group_real.py', 'root_lattice_realization_algebras.py', 'root_lattice_realizations.py', diff --git a/src/sage/combinat/words/meson.build b/src/sage/combinat/words/meson.build index 6751e09b369..bb12f65d28f 100644 --- a/src/sage/combinat/words/meson.build +++ b/src/sage/combinat/words/meson.build @@ -11,6 +11,7 @@ py.install_sources( 'shuffle_product.py', 'suffix_trees.py', 'word.py', + 'word_datatypes.pxd', 'word_generators.py', 'word_infinite_datatypes.py', 'word_options.py', diff --git a/src/sage/crypto/meson.build b/src/sage/crypto/meson.build index de6bf158f16..633c048a59c 100644 --- a/src/sage/crypto/meson.build +++ b/src/sage/crypto/meson.build @@ -1,6 +1,7 @@ py.install_sources( '__init__.py', 'all.py', + 'boolean_function.pxd', 'cipher.py', 'classical.py', 'classical_cipher.py', diff --git a/src/sage/ext/interpreters/meson.build b/src/sage/ext/interpreters/meson.build index e66a9d405bc..f965ce83da0 100644 --- a/src/sage/ext/interpreters/meson.build +++ b/src/sage/ext/interpreters/meson.build @@ -51,7 +51,13 @@ extension_data = { interpreters_dep = declare_dependency( include_directories: include_directories('.'), - sources: [interpreters[1], interpreters[2], interpreters[3], interpreters[4], interpreters[5]], + sources: [ + interpreters[1], + interpreters[2], + interpreters[3], + interpreters[4], + interpreters[5], + ], ) foreach name, pyx : extension_data @@ -61,15 +67,6 @@ foreach name, pyx : extension_data subdir: 'sage/ext/interpreters', install: true, include_directories: [inc_cpython, inc_ext, inc_rings, inc_src], - dependencies: [ - py_dep, - cypari2, - cysignals, - gmp, - gsl, - mpc, - mpfr, - pari, - ], + dependencies: [py_dep, cypari2, cysignals, gmp, gsl, mpc, mpfr, pari], ) endforeach diff --git a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build index b3f91e444f4..4b4ea8df4e7 100644 --- a/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build +++ b/src/sage/geometry/polyhedron/combinatorial_polyhedron/meson.build @@ -1,5 +1,13 @@ py.install_sources( 'all.py', + 'base.pxd', + 'combinatorial_face.pxd', + 'conversions.pxd', + 'face_data_structure.pxd', + 'face_iterator.pxd', + 'face_list_data_structure.pxd', + 'list_of_faces.pxd', + 'polyhedron_face_lattice.pxd', subdir: 'sage/geometry/polyhedron/combinatorial_polyhedron', ) diff --git a/src/sage/geometry/triangulation/meson.build b/src/sage/geometry/triangulation/meson.build index 9418fb3b74f..dec407d83d5 100644 --- a/src/sage/geometry/triangulation/meson.build +++ b/src/sage/geometry/triangulation/meson.build @@ -1,7 +1,10 @@ py.install_sources( 'all.py', + 'data.pxd', 'element.py', + 'functions.pxd', 'point_configuration.py', + 'triangulations.pxd', subdir: 'sage/geometry/triangulation', ) diff --git a/src/sage/graphs/graph_decompositions/meson.build b/src/sage/graphs/graph_decompositions/meson.build index f406ed566f5..0d9778ae2ba 100644 --- a/src/sage/graphs/graph_decompositions/meson.build +++ b/src/sage/graphs/graph_decompositions/meson.build @@ -8,6 +8,7 @@ py.install_sources( 'fast_digraph.pxd', 'modular_decomposition.py', 'rankwidth.pxd', + 'slice_decomposition.pxd', 'tree_decomposition.pxd', 'vertex_separation.pxd', subdir: 'sage/graphs/graph_decompositions', diff --git a/src/sage/groups/matrix_gps/meson.build b/src/sage/groups/matrix_gps/meson.build index c33d0b939a7..43968d8ed59 100644 --- a/src/sage/groups/matrix_gps/meson.build +++ b/src/sage/groups/matrix_gps/meson.build @@ -5,6 +5,8 @@ py.install_sources( 'coxeter_group.py', 'finitely_generated.py', 'finitely_generated_gap.py', + 'group_element.pxd', + 'group_element_gap.pxd', 'heisenberg.py', 'homset.py', 'isometries.py', diff --git a/src/sage/groups/perm_gps/meson.build b/src/sage/groups/perm_gps/meson.build index 9d6ce926c5f..e986fcd964a 100644 --- a/src/sage/groups/perm_gps/meson.build +++ b/src/sage/groups/perm_gps/meson.build @@ -3,6 +3,7 @@ py.install_sources( 'constructor.py', 'cubegroup.py', 'permgroup.py', + 'permgroup_element.pxd', 'permgroup_morphism.py', 'permgroup_named.py', 'permutation_groups_catalog.py', diff --git a/src/sage/groups/perm_gps/partn_ref/meson.build b/src/sage/groups/perm_gps/partn_ref/meson.build index 3ceae247e3b..092b0d0b2c8 100644 --- a/src/sage/groups/perm_gps/partn_ref/meson.build +++ b/src/sage/groups/perm_gps/partn_ref/meson.build @@ -1,4 +1,17 @@ -py.install_sources('all.py', subdir: 'sage/groups/perm_gps/partn_ref') +py.install_sources( + 'all.py', + 'automorphism_group_canonical_label.pxd', + 'canonical_augmentation.pxd', + 'data_structures.pxd', + 'double_coset.pxd', + 'refinement_binary.pxd', + 'refinement_graphs.pxd', + 'refinement_lists.pxd', + 'refinement_matrices.pxd', + 'refinement_python.pxd', + 'refinement_sets.pxd', + subdir: 'sage/groups/perm_gps/partn_ref', +) extension_data = { 'automorphism_group_canonical_label' : files( diff --git a/src/sage/groups/perm_gps/partn_ref2/meson.build b/src/sage/groups/perm_gps/partn_ref2/meson.build index e89375a105d..ca6fadbfda9 100644 --- a/src/sage/groups/perm_gps/partn_ref2/meson.build +++ b/src/sage/groups/perm_gps/partn_ref2/meson.build @@ -1,4 +1,8 @@ -py.install_sources('all.py', subdir: 'sage/groups/perm_gps/partn_ref2') +py.install_sources( + 'all.py', + 'refinement_generic.pxd', + subdir: 'sage/groups/perm_gps/partn_ref2', +) extension_data = {'refinement_generic' : files('refinement_generic.pyx')} diff --git a/src/sage/groups/semimonomial_transformations/meson.build b/src/sage/groups/semimonomial_transformations/meson.build index 71d7576574a..402cb5244e5 100644 --- a/src/sage/groups/semimonomial_transformations/meson.build +++ b/src/sage/groups/semimonomial_transformations/meson.build @@ -1,5 +1,6 @@ py.install_sources( 'all.py', + 'semimonomial_transformation.pxd', 'semimonomial_transformation_group.py', subdir: 'sage/groups/semimonomial_transformations', ) diff --git a/src/sage/interfaces/meson.build b/src/sage/interfaces/meson.build index 17b59fafee5..4a12245d532 100644 --- a/src/sage/interfaces/meson.build +++ b/src/sage/interfaces/meson.build @@ -40,6 +40,7 @@ py.install_sources( 'phc.py', 'polymake.py', 'povray.py', + 'process.pxd', 'psage.py', 'qepcad.py', 'qsieve.py', diff --git a/src/sage/libs/eclib/meson.build b/src/sage/libs/eclib/meson.build index 0684bca69ca..dd6ecc3f581 100644 --- a/src/sage/libs/eclib/meson.build +++ b/src/sage/libs/eclib/meson.build @@ -1,4 +1,5 @@ py.install_sources( + '__init__.pxd', '__init__.py', 'all.py', 'constructor.py', diff --git a/src/sage/libs/flint/meson.build b/src/sage/libs/flint/meson.build index 3b73d34741f..fe12b28b5f7 100644 --- a/src/sage/libs/flint/meson.build +++ b/src/sage/libs/flint/meson.build @@ -1,29 +1,148 @@ py.install_sources( '__init__.py', + 'acb.pxd', + 'acb_calc.pxd', + 'acb_dft.pxd', + 'acb_dirichlet.pxd', + 'acb_elliptic.pxd', + 'acb_hypgeom.pxd', + 'acb_macros.pxd', + 'acb_mat.pxd', + 'acb_mat_macros.pxd', + 'acb_modular.pxd', + 'acb_poly.pxd', + 'acb_poly_macros.pxd', + 'acb_theta.pxd', + 'acf.pxd', + 'aprcl.pxd', + 'arb.pxd', + 'arb_calc.pxd', + 'arb_fmpz_poly.pxd', + 'arb_fpwrap.pxd', + 'arb_hypgeom.pxd', + 'arb_macros.pxd', + 'arb_mat.pxd', + 'arb_mat_macros.pxd', + 'arb_poly.pxd', + 'arf.pxd', 'arith.pxd', + 'bernoulli.pxd', + 'bool_mat.pxd', + 'ca.pxd', + 'ca_ext.pxd', + 'ca_field.pxd', + 'ca_mat.pxd', + 'ca_poly.pxd', + 'ca_vec.pxd', + 'calcium.pxd', + 'd_mat.pxd', + 'd_vec.pxd', + 'dirichlet.pxd', + 'dlog.pxd', + 'double_extras.pxd', + 'double_interval.pxd', + 'fexpr.pxd', + 'fexpr_builtin.pxd', + 'fft.pxd', 'flint.pxd', 'flint_ntl_wrap.h', 'flint_wrap.h', 'fmpq.pxd', 'fmpq_mat.pxd', + 'fmpq_mat_macros.pxd', + 'fmpq_mpoly.pxd', + 'fmpq_mpoly_factor.pxd', 'fmpq_poly.pxd', + 'fmpq_poly_macros.pxd', + 'fmpq_poly_sage.pxd', + 'fmpq_vec.pxd', 'fmpz.pxd', + 'fmpz_extras.pxd', 'fmpz_factor.pxd', + 'fmpz_factor_sage.pxd', + 'fmpz_lll.pxd', + 'fmpz_macros.pxd', 'fmpz_mat.pxd', + 'fmpz_mat_macros.pxd', 'fmpz_mod.pxd', + 'fmpz_mod_mat.pxd', + 'fmpz_mod_mpoly.pxd', + 'fmpz_mod_mpoly_factor.pxd', 'fmpz_mod_poly.pxd', + 'fmpz_mod_poly_factor.pxd', + 'fmpz_mod_vec.pxd', + 'fmpz_mpoly.pxd', + 'fmpz_mpoly_factor.pxd', + 'fmpz_mpoly_q.pxd', 'fmpz_poly.pxd', + 'fmpz_poly_factor.pxd', + 'fmpz_poly_macros.pxd', 'fmpz_poly_mat.pxd', 'fmpz_poly_q.pxd', + 'fmpz_poly_sage.pxd', 'fmpz_vec.pxd', + 'fmpzi.pxd', 'fq.pxd', + 'fq_default.pxd', + 'fq_default_mat.pxd', + 'fq_default_poly.pxd', + 'fq_default_poly_factor.pxd', + 'fq_embed.pxd', + 'fq_mat.pxd', 'fq_nmod.pxd', + 'fq_nmod_embed.pxd', + 'fq_nmod_mat.pxd', + 'fq_nmod_mpoly.pxd', + 'fq_nmod_mpoly_factor.pxd', + 'fq_nmod_poly.pxd', + 'fq_nmod_poly_factor.pxd', + 'fq_nmod_vec.pxd', + 'fq_poly.pxd', + 'fq_poly_factor.pxd', + 'fq_vec.pxd', + 'fq_zech.pxd', + 'fq_zech_embed.pxd', + 'fq_zech_mat.pxd', + 'fq_zech_poly.pxd', + 'fq_zech_poly_factor.pxd', + 'fq_zech_vec.pxd', + 'gr.pxd', + 'gr_generic.pxd', + 'gr_mat.pxd', + 'gr_mpoly.pxd', + 'gr_poly.pxd', + 'gr_special.pxd', + 'gr_vec.pxd', + 'hypgeom.pxd', + 'long_extras.pxd', + 'mag.pxd', + 'mag_macros.pxd', + 'mpf_mat.pxd', + 'mpf_vec.pxd', + 'mpfr_mat.pxd', + 'mpfr_vec.pxd', + 'mpn_extras.pxd', + 'mpoly.pxd', + 'nf.pxd', + 'nf_elem.pxd', + 'nmod.pxd', + 'nmod_mat.pxd', + 'nmod_mpoly.pxd', + 'nmod_mpoly_factor.pxd', 'nmod_poly.pxd', + 'nmod_poly_factor.pxd', + 'nmod_poly_mat.pxd', 'nmod_vec.pxd', 'ntl_interface.pxd', 'padic.pxd', + 'padic_mat.pxd', 'padic_poly.pxd', + 'partitions.pxd', + 'perm.pxd', + 'profiler.pxd', 'qadic.pxd', + 'qfb.pxd', + 'qqbar.pxd', 'qsieve.pxd', 'thread_pool.pxd', 'types.pxd', diff --git a/src/sage/libs/mpmath/meson.build b/src/sage/libs/mpmath/meson.build index bfc1e51723e..4659da1563a 100644 --- a/src/sage/libs/mpmath/meson.build +++ b/src/sage/libs/mpmath/meson.build @@ -1,6 +1,8 @@ py.install_sources( '__init__.py', 'all.py', + 'ext_impl.pxd', + 'ext_main.pxd', 'utils.pxd', subdir: 'sage/libs/mpmath', ) diff --git a/src/sage/matrix/meson.build b/src/sage/matrix/meson.build index d1f21741fad..c0841d77f34 100644 --- a/src/sage/matrix/meson.build +++ b/src/sage/matrix/meson.build @@ -2,19 +2,58 @@ iml = cc.find_library('iml') py.install_sources( + 'action.pxd', 'all.py', 'all__sagemath_meataxe.py', + 'args.pxd', 'benchmark.py', 'berlekamp_massey.py', 'compute_J_ideal.py', 'docs.py', + 'matrix.pxd', + 'matrix0.pxd', + 'matrix1.pxd', + 'matrix2.pxd', + 'matrix_cdv.pxd', + 'matrix_complex_ball_dense.pxd', + 'matrix_complex_double_dense.pxd', + 'matrix_cyclo_dense.pxd', + 'matrix_dense.pxd', + 'matrix_domain_dense.pxd', + 'matrix_domain_sparse.pxd', + 'matrix_double_dense.pxd', + 'matrix_double_sparse.pxd', + 'matrix_gap.pxd', + 'matrix_generic_dense.pxd', + 'matrix_generic_sparse.pxd', + 'matrix_gf2e_dense.pxd', + 'matrix_gfpn_dense.pxd', + 'matrix_integer_dense.pxd', 'matrix_integer_dense_hnf.py', 'matrix_integer_dense_saturation.py', + 'matrix_integer_sparse.pxd', + 'matrix_laurent_mpolynomial_dense.pxd', 'matrix_misc.py', + 'matrix_mod2_dense.pxd', + 'matrix_modn_dense_double.pxd', + 'matrix_modn_dense_float.pxd', + 'matrix_modn_sparse.pxd', + 'matrix_mpolynomial_dense.pxd', + 'matrix_numpy_dense.pxd', + 'matrix_numpy_integer_dense.pxd', + 'matrix_polynomial_dense.pxd', + 'matrix_rational_dense.pxd', + 'matrix_rational_sparse.pxd', + 'matrix_real_double_dense.pxd', 'matrix_space.py', + 'matrix_sparse.pxd', + 'matrix_symbolic_dense.pxd', + 'matrix_symbolic_sparse.pxd', + 'matrix_window.pxd', 'operation_table.py', 'special.py', 'symplectic_basis.py', + 'template.pxd', 'tests.py', subdir: 'sage/matrix', ) diff --git a/src/sage/matroids/meson.build b/src/sage/matroids/meson.build index 49031ed84d6..43c80789811 100644 --- a/src/sage/matroids/meson.build +++ b/src/sage/matroids/meson.build @@ -1,16 +1,28 @@ py.install_sources( 'advanced.py', 'all.py', + 'basis_exchange_matroid.pxd', + 'basis_matroid.pxd', 'catalog.py', + 'circuit_closures_matroid.pxd', + 'circuits_matroid.pxd', 'constructor.py', 'database_collections.py', 'database_matroids.py', 'dual_matroid.py', + 'extension.pxd', + 'flats_matroid.pxd', + 'graphic_matroid.pxd', + 'lean_matrix.pxd', + 'linear_matroid.pxd', + 'matroid.pxd', 'matroids_catalog.py', 'matroids_plot_helpers.py', 'minor_matroid.py', 'named_matroids.py', 'rank_matroid.py', + 'set_system.pxd', + 'union_matroid.pxd', 'utilities.py', subdir: 'sage/matroids', ) diff --git a/src/sage/modular/meson.build b/src/sage/modular/meson.build index 3c8a5e7059c..d334cf975c8 100644 --- a/src/sage/modular/meson.build +++ b/src/sage/modular/meson.build @@ -8,6 +8,7 @@ py.install_sources( 'dims.py', 'dirichlet.py', 'etaproducts.py', + 'hypergeometric_misc.pxd', 'hypergeometric_motive.py', 'multiple_zeta.py', 'multiple_zeta_F_algebra.py', diff --git a/src/sage/modular/modsym/meson.build b/src/sage/modular/modsym/meson.build index 570e4c762d8..f05d0776246 100644 --- a/src/sage/modular/modsym/meson.build +++ b/src/sage/modular/modsym/meson.build @@ -1,14 +1,17 @@ py.install_sources( 'all.py', 'ambient.py', + 'apply.pxd', 'boundary.py', 'element.py', 'g1list.py', 'ghlist.py', 'hecke_operator.py', + 'manin_symbol.pxd', 'manin_symbol_list.py', 'modsym.py', 'modular_symbols.py', + 'p1list.pxd', 'p1list_nf.py', 'relation_matrix.py', 'space.py', diff --git a/src/sage/modular/pollack_stevens/meson.build b/src/sage/modular/pollack_stevens/meson.build index 5eeff5063fe..d22947db12c 100644 --- a/src/sage/modular/pollack_stevens/meson.build +++ b/src/sage/modular/pollack_stevens/meson.build @@ -1,5 +1,6 @@ py.install_sources( 'all.py', + 'dist.pxd', 'distributions.py', 'fund_domain.py', 'manin_map.py', diff --git a/src/sage/modules/meson.build b/src/sage/modules/meson.build index 43b874eba05..bc505da9372 100644 --- a/src/sage/modules/meson.build +++ b/src/sage/modules/meson.build @@ -3,7 +3,9 @@ py.install_sources( 'complex_double_vector.py', 'diamond_cutting.py', 'filtered_vector_space.py', + 'finite_submodule_iter.pxd', 'free_module.py', + 'free_module_element.pxd', 'free_module_homspace.py', 'free_module_integer.py', 'free_module_morphism.py', @@ -11,6 +13,7 @@ py.install_sources( 'free_quadratic_module_integer_symmetric.py', 'matrix_morphism.py', 'misc.py', + 'module.pxd', 'module_functors.py', 'multi_filtered_vector_space.py', 'quotient_module.py', @@ -20,6 +23,18 @@ py.install_sources( 'torsion_quadratic_module.py', 'tutorial_free_modules.py', 'vector_callable_symbolic_dense.py', + 'vector_complex_double_dense.pxd', + 'vector_double_dense.pxd', + 'vector_integer_dense.pxd', + 'vector_integer_sparse.pxd', + 'vector_mod2_dense.pxd', + 'vector_modn_dense.pxd', + 'vector_modn_sparse.pxd', + 'vector_numpy_dense.pxd', + 'vector_numpy_integer_dense.pxd', + 'vector_rational_dense.pxd', + 'vector_rational_sparse.pxd', + 'vector_real_double_dense.pxd', 'vector_space_homspace.py', 'vector_space_morphism.py', 'vector_symbolic_dense.py', diff --git a/src/sage/modules/with_basis/meson.build b/src/sage/modules/with_basis/meson.build index d6f63bf1391..1956c6ac99c 100644 --- a/src/sage/modules/with_basis/meson.build +++ b/src/sage/modules/with_basis/meson.build @@ -1,6 +1,7 @@ py.install_sources( 'all.py', 'cell_module.py', + 'indexed_element.pxd', 'invariant.py', 'morphism.py', 'representation.py', diff --git a/src/sage/monoids/meson.build b/src/sage/monoids/meson.build index a76432470b0..df2a4ae36be 100644 --- a/src/sage/monoids/meson.build +++ b/src/sage/monoids/meson.build @@ -2,6 +2,7 @@ py.install_sources( 'all.py', 'automatic_semigroup.py', 'free_abelian_monoid.py', + 'free_abelian_monoid_element.pxd', 'free_monoid.py', 'free_monoid_element.py', 'hecke_monoid.py', diff --git a/src/sage/numerical/backends/meson.build b/src/sage/numerical/backends/meson.build index a214543fb34..a6a53e97033 100644 --- a/src/sage/numerical/backends/meson.build +++ b/src/sage/numerical/backends/meson.build @@ -5,13 +5,22 @@ py.install_sources( 'all.py', 'all__sagemath_polyhedra.py', 'cvxopt_backend_test.py', + 'cvxpy_backend.pxd', 'cvxpy_backend_test.py', + 'generic_backend.pxd', 'generic_backend_test.py', + 'generic_sdp_backend.pxd', + 'glpk_backend.pxd', 'glpk_backend_test.py', + 'glpk_exact_backend.pxd', 'glpk_exact_backend_test.py', + 'glpk_graph_backend.pxd', + 'interactivelp_backend.pxd', 'interactivelp_backend_test.py', 'logging_backend.py', + 'matrix_sdp_backend.pxd', 'ppl_backend_test.py', + 'scip_backend.pxd', 'scip_backend_test.py', subdir: 'sage/numerical/backends', ) diff --git a/src/sage/numerical/meson.build b/src/sage/numerical/meson.build index 97111776a7b..222deff834e 100644 --- a/src/sage/numerical/meson.build +++ b/src/sage/numerical/meson.build @@ -3,9 +3,13 @@ py.install_sources( 'all__sagemath_polyhedra.py', 'interactive_simplex_method.py', 'knapsack.py', + 'linear_functions.pxd', 'linear_tensor.py', 'linear_tensor_constraints.py', + 'linear_tensor_element.pxd', + 'mip.pxd', 'optimize.py', + 'sdp.pxd', subdir: 'sage/numerical', ) diff --git a/src/sage/plot/plot3d/meson.build b/src/sage/plot/plot3d/meson.build index 15938b119e7..46cc4a25ffc 100644 --- a/src/sage/plot/plot3d/meson.build +++ b/src/sage/plot/plot3d/meson.build @@ -1,16 +1,21 @@ py.install_sources( 'all.py', + 'base.pxd', 'implicit_plot3d.py', + 'index_face_set.pxd', 'introduction.py', 'list_plot3d.py', 'parametric_plot3d.py', + 'parametric_surface.pxd', 'platonic.py', 'plot3d.py', 'plot_field3d.py', 'revolution_plot3d.py', + 'shapes.pxd', 'shapes2.py', 'tachyon.py', 'texture.py', + 'transform.pxd', 'tri_plot.py', subdir: 'sage/plot/plot3d', ) diff --git a/src/sage/quivers/meson.build b/src/sage/quivers/meson.build index c3f3e03e3a9..cdefdce952b 100644 --- a/src/sage/quivers/meson.build +++ b/src/sage/quivers/meson.build @@ -1,10 +1,12 @@ py.install_sources( 'algebra.py', + 'algebra_elements.pxd', 'all.py', 'ar_quiver.py', 'homspace.py', 'morphism.py', 'path_semigroup.py', + 'paths.pxd', 'representation.py', subdir: 'sage/quivers', ) diff --git a/src/sage/sat/solvers/meson.build b/src/sage/sat/solvers/meson.build index 0bf66f7fcb6..86657c5c854 100644 --- a/src/sage/sat/solvers/meson.build +++ b/src/sage/sat/solvers/meson.build @@ -4,6 +4,7 @@ py.install_sources( 'dimacs.py', 'picosat.py', 'sat_lp.py', + 'satsolver.pxd', subdir: 'sage/sat/solvers', ) diff --git a/src/sage/stats/distributions/meson.build b/src/sage/stats/distributions/meson.build index 59f2387765a..129d5f74d13 100644 --- a/src/sage/stats/distributions/meson.build +++ b/src/sage/stats/distributions/meson.build @@ -1,6 +1,8 @@ py.install_sources( 'all.py', 'catalog.py', + 'dgs.pxd', + 'discrete_gaussian_integer.pxd', 'discrete_gaussian_lattice.py', 'discrete_gaussian_polynomial.py', subdir: 'sage/stats/distributions', diff --git a/src/sage/stats/hmm/meson.build b/src/sage/stats/hmm/meson.build index def2fe0cc96..cbf4a30caa5 100644 --- a/src/sage/stats/hmm/meson.build +++ b/src/sage/stats/hmm/meson.build @@ -1,4 +1,10 @@ -py.install_sources('all.py', subdir: 'sage/stats/hmm') +py.install_sources( + 'all.py', + 'distributions.pxd', + 'hmm.pxd', + 'util.pxd', + subdir: 'sage/stats/hmm', +) extension_data = { 'chmm' : files('chmm.pyx'), diff --git a/src/sage/stats/meson.build b/src/sage/stats/meson.build index 36cafd71142..414a909270c 100644 --- a/src/sage/stats/meson.build +++ b/src/sage/stats/meson.build @@ -1,4 +1,11 @@ -py.install_sources('all.py', 'basic_stats.py', 'r.py', subdir: 'sage/stats') +py.install_sources( + 'all.py', + 'basic_stats.py', + 'intlist.pxd', + 'r.py', + 'time_series.pxd', + subdir: 'sage/stats', +) extension_data = { 'intlist' : files('intlist.pyx'), diff --git a/tools/update-meson.py b/tools/update-meson.py index 3f918b3361d..827b7d9b5a3 100755 --- a/tools/update-meson.py +++ b/tools/update-meson.py @@ -80,7 +80,7 @@ def update_python_sources(self: Rewriter, visitor: AstPython): folder = Path(target.filename).parent python_files = sorted( - list(folder.glob("*.py")) + list(folder.glob("*.py")) + list(folder.glob('*.pxd')) ) # + list(folder.glob('*.pxd')) + list(folder.glob('*.h'))) to_append: list[StringNode] = []