.gitignore

## --------------------------------
## USER-DEFINED .gitignore below
## --------------------------------
*.DS_Store
*._.DS_Store
*venvs*
.sourcery.yaml
plots-4dSU3/
.qmd/
*.svgz
reports/l2hmc.html
src/l2hmc/.jukit/
src/l2hmc/.virtual_documents/
src/l2hmc/feature_sourcery/
src/l2hmc/notebooks/.jukit/
src/l2hmc/notebooks/detached

*.jukit*
*.virtual_documents*
*_extensions*
*_freeze*

**.venv**
/**venv**/**
poetry.lock
**events.out.tfevents**
**wandb**
**.aim**
src/l2hmc/wandb/**
src/l2hmc/outputs/**
**outputs**
**wandb/**
.venv/**
old/**
src/l2hmc/outputs/*
src/l2hmc/wandb/**
*.output
*.error
*.cobaltlog
logs/
plots/
data/
doc/tikz/
**broken**
doc/hmc/
doc/comments.tex
doc/extra_plots.tex
tags
**checkpoints/**
./pyrightconfig.json
./l2hmc-qcd/utils/rich_table_movie.py
l2hmc-qcd.code-workspace
src/l2hmc/outputs/runs/
src/l2hmc/outputs/multirun/
src/l2hmc/outputs/debug
src/l2hmc/notebooks/SU3d4-cpu.ipynb
src/l2hmc/notebooks/example-cpu.ipynb
src/l2hmc/notebooks/experiment-Copy1.ipynb
src/l2hmc/notebooks/experiment-cpu.ipynb
src/l2hmc/notebooks/pngs/
src/l2hmc/notebooks/ridgeplots/
src/l2hmc/notebooks/su3-cpu.ipynb
src/l2hmc/notebooks/svgs/
src/l2hmc/notebooks/tests.ipynb
src/l2hmc/.deepspeed_env
src/l2hmc/affinity.sh
src/l2hmc/affinity_thetaGPU.sh
src/l2hmc/checkpoints/
src/l2hmc/conf/ds_config-debug.json
src/l2hmc/conf/dynamics/su3-debug.yaml
src/l2hmc/conf/network/16-16-16-16.yaml
src/l2hmc/dynamics/pytorch/dynamics-2023-01-05.py
src/l2hmc/hostfile
src/l2hmc/logfiles
src/l2hmc/main.sh
src/l2hmc/mlprof-train.sh
src/l2hmc/mpi_profile.2232990.0
src/l2hmc/network/pytorch/layers.py
src/l2hmc/notebooks/SU3d4-Copy1.ipynb
src/l2hmc/notebooks/SU3d4-Copy3.ipynb
src/l2hmc/notebooks/experiment.md
# src/l2hmc/notebooks/l2hmc-2dU1.ipynb
# src/l2hmc/notebooks/l2hmc.ipynb
src/l2hmc/notebooks/model.png
# src/l2hmc/notebooks/pt-4dSU3.ipynb
# src/l2hmc/notebooks/tensorflow-SU3d4.ipynb
# notebooks/tf-SU3d4.ipynb
src/l2hmc/nthmc/
src/l2hmc/scale_test.sh
src/l2hmc/test.sh
src/l2hmc/train-all.sh
src/l2hmc/trainers/deepspeed/
src/l2hmc/utils/history-2023-01-03.py
src/l2hmc/utils/logger.py
src/l2hmc/utils/misc.py
src/l2hmc/utils/plot_helpers-2023-02-07.py


.vscode/
bin/restore.sh

gauge_logs/
gauge_logs_eager/
gmm_logs/
figures/
untracked/

doc/main_vimtex_selected.pdf
doc/main_vimtex_selected.tex
doc/updates/updates_2020_06_01.tex
requirements.txt

bin/hmc_dirs.txt
bin/log_dirs.txt
bin/output_dirs.txt


*Untitled*
*.un~*
*__pycache__*
*.bak
*figures*
*.pkl
*.mp4
*backup*
*old*

*.z
*.bak*
*.ipynb_checkpoints
.env
.vim
doc/Makefile
doc/autocorrelation_plots_vimtex_selected.pdf
doc/autocorrelation_plots_vimtex_selected.tex
doc/unused_files.txt
doc/used_files.txt
*.DS_store*

timeline.json


## -------------------------
## PYTHON .gitignore below
## -------------------------
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/



## -------------------------
## LATEX .gitignore below
## -------------------------
## Core latex/pdflatex auxiliary files:
*.aux
*.lof
*.log
*.lot
*.fls
*.out
*.toc
*.fmt
*.fot
*.cb
*.cb2
.*.lb

## Intermediate documents:
*.dvi
*.xdv
*-converted-to.*
# these rules might exclude image files for figures etc.
# *.ps
# *.eps
# *.pdf

## Generated if empty string is given at "Please type another file name for output:"
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## Bibliography auxiliary files (bibtex/biblatex/biber):
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*-blx.bib
*.run.xml

## Build tool auxiliary files:
*.fdb_latexmk
*.synctex
*.synctex(busy)
*.synctex.gz
*.synctex.gz(busy)
*.pdfsync

## Build tool directories for auxiliary files
# latexrun
latex.out/

## Auxiliary and intermediate files from other packages:
# algorithms
*.alg
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# achemso
acs-*.bib

# amsthm
*.thm

# beamer
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# changes
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# comment
*.cut

# cprotect
*.cpt

# elsarticle (documentclass of Elsevier journals)
*.spl

# endnotes
*.ent

# fixme
*.lox

# feynmf/feynmp
*.mf
*.mp
*.t[1-9]
*.t[1-9][0-9]
*.tfm

#(r)(e)ledmac/(r)(e)ledpar
*.end
*.?end
*.[1-9]
*.[1-9][0-9]
*.[1-9][0-9][0-9]
*.[1-9]R
*.[1-9][0-9]R
*.[1-9][0-9][0-9]R
*.eledsec[1-9]
*.eledsec[1-9]R
*.eledsec[1-9][0-9]
*.eledsec[1-9][0-9]R
*.eledsec[1-9][0-9][0-9]
*.eledsec[1-9][0-9][0-9]R

# glossaries
*.acn
*.acr
*.glg
*.glo
*.gls
*.glsdefs
*.lzo
*.lzs

# uncomment this for glossaries-extra (will ignore makeindex's style files!)
# *.ist

# gnuplottex
*-gnuplottex-*

# gregoriotex
*.gaux
*.gtex

# htlatex
*.4ct
*.4tc
*.idv
*.lg
*.trc
*.xref

# hyperref
*.brf

# knitr
*-concordance.tex
# TODO Uncomment the next line if you use knitr and want to ignore its generated tikz files
# *.tikz
*-tikzDictionary

# listings
*.lol

# luatexja-ruby
*.ltjruby

# makeidx
*.idx
*.ilg
*.ind

# minitoc
*.maf
*.mlf
*.mlt
*.mtc[0-9]*
*.slf[0-9]*
*.slt[0-9]*
*.stc[0-9]*

# minted
_minted*
*.pyg

# morewrites
*.mw

# nomencl
*.nlg
*.nlo
*.nls

# pax
*.pax

# pdfpcnotes
*.pdfpc

# sagetex
*.sagetex.sage
*.sagetex.py
*.sagetex.scmd

# scrwfile
*.wrt

# sympy
*.sout
*.sympy
sympy-plots-for-*.tex/

# pdfcomment
*.upa
*.upb

# pythontex
*.pytxcode
pythontex-files-*/

# tcolorbox
*.listing

# thmtools
*.loe

# TikZ & PGF
*.dpth
*.md5
*.auxlock

# todonotes
*.tdo

# vhistory
*.hst
*.ver

# easy-todo
*.lod

# xcolor
*.xcp

# xmpincl
*.xmpi

# xindy
*.xdy

# xypic precompiled matrices and outlines
*.xyc
*.xyd

# endfloat
*.ttt
*.fff

# Latexian
TSWLatexianTemp*

## Editors:
# WinEdt
*.bak
*.sav

# Texpad
.texpadtmp

# LyX
*.lyx~

# Kile
*.backup

# gummi
.*.swp

# KBibTeX
*~[0-9]*

# TeXnicCenter
*.tps

# auto folder when using emacs and auctex
./auto/*
*.el

# expex forward references with \gathertags
*-tags.tex

# standalone packages
*.sta

# Makeindex log files
*.lpz

# REVTeX puts footnotes in the bibliography by default, unless the nofootinbib
# option is specified. Footnotes are the stored in a file with suffix Notes.bib.
# Uncomment the next line to have this generated file ignored.
#*Notes.bib
l2hmc-qcd/pytorch
l2hmc_dirs.rtf
top_susceptibility/
pyrightconfig.json
l2hmc_dirs_list.txt
l2hmc-qcd/nflow_tutorial
batch_scaling_tests/
hmc_dirs_list.txt
datasets/
*.txt
l2hmc-qcd/nflows_tutorial/
log_dirs.txt
# l2hmc-qcd/notebooks/log_dirs
doc/autocorrelation_plots.tex
doc/leapfrog/leapfrog_plots_vimtex_selected.pdf
l2hmc-qcd/notebooks/model.png
l2hmc-qcd/notebooks/log_dirs/
l2hmc-qcd/notebooks/*thetaGPU*
l2hmc-qcd/notebooks/*Copy*
l2hmc-qcd/notebooks/*test*
*.numbers
*.csv
pyrightconfig1.json
notebooks/HMC_data_plots.ipynb
notebooks/autocorrelations.ipynb
bin/*beta*
bin/*hmc*
bin/*experiments*
*node_modules*
*2021_*
bin/*scale_*

/.quarto/

/.luarc.json