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Export by condition summay table #6

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deeenes opened this issue Oct 3, 2022 · 4 comments
Open

Export by condition summay table #6

deeenes opened this issue Oct 3, 2022 · 4 comments
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awaiting feedback Solution has to be approved, or information is missing to proceed duplicate This issue or pull request already exists enhancement New feature or request ready? Has been addressed, solution is to be approved
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@deeenes
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deeenes commented Oct 3, 2022

Give summarized statistics table of drug treatments as in the table below. One table that has cycles separated, and one that averages all cycles
(almost same as #5)

@deeenes deeenes self-assigned this Oct 4, 2022
@deeenes deeenes added duplicate This issue or pull request already exists enhancement New feature or request labels Oct 4, 2022
@deeenes deeenes added this to the 1.1 milestone Oct 5, 2022
@deeenes
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deeenes commented Oct 6, 2022

By condition statistics can be generated using the stats_table function, and exported to TSV or XLSX by the stats_table_tsv or stats_table_excel functions. See the docs for details. One TSV table is exported in the analysis step of the workflow.

@deeenes deeenes added awaiting feedback Solution has to be approved, or information is missing to proceed ready? Has been addressed, solution is to be approved labels Oct 6, 2022
@NgocHien-Du
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Is the function included in the config? Or do we have to call it separately?

@deeenes
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deeenes commented Oct 14, 2022

Export of a TSV table is included in the analysis step of the workflow. To export different format, or with different settings, call the PlugExperiment.stats_table_tsv or PlugExperiment.stats_table_excel functions in your script.

You can also let me know which exports should be included in the workflow by default.

@NgocHien-Du
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We do not know yet which exports is the best for the default so just leave it is out for the moment. We can export manually and explore what is the best.

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