diff --git a/server/src/internalClusterTest/java/org/opensearch/snapshots/DeleteSnapshotV2IT.java b/server/src/internalClusterTest/java/org/opensearch/snapshots/DeleteSnapshotV2IT.java
index 7279e4de427e2..c4e3a478c8540 100644
--- a/server/src/internalClusterTest/java/org/opensearch/snapshots/DeleteSnapshotV2IT.java
+++ b/server/src/internalClusterTest/java/org/opensearch/snapshots/DeleteSnapshotV2IT.java
@@ -264,6 +264,7 @@ public void testRemoteStoreCleanupForDeletedIndexForSnapshotV2MultipleSnapshots(
         List<Path> translogPostSnapshot1 = Files.list(translogPath).collect(Collectors.toList());
 
         forceMerge(1);
+        refresh(remoteStoreEnabledIndexName);
         indexRandomDocs(remoteStoreEnabledIndexName, 25);
 
         CreateSnapshotResponse createSnapshotResponse2 = client().admin()
@@ -284,7 +285,6 @@ public void testRemoteStoreCleanupForDeletedIndexForSnapshotV2MultipleSnapshots(
         assertBusy(() -> assertTrue(translogPostSnapshot2.size() > translogPostSnapshot1.size()), 60, TimeUnit.SECONDS);
         assertBusy(() -> assertTrue(segmentsPostSnapshot2.size() > segmentsPostSnapshot1.size()), 60, TimeUnit.SECONDS);
 
-        remoteStorePinnedTimestampService.rescheduleAsyncUpdatePinnedTimestampTask(TimeValue.timeValueSeconds(1));
         keepPinnedTimestampSchedulerUpdated();
 
         // delete remote store index
@@ -300,12 +300,16 @@ public void testRemoteStoreCleanupForDeletedIndexForSnapshotV2MultipleSnapshots(
             .get();
         assertAcked(deleteSnapshotResponse);
 
-        List<Path> segmentsPostDeletionOfSnapshot1 = Files.list(segmentsPath).collect(Collectors.toList());
-        List<Path> translogPostDeletionOfSnapshot1 = Files.list(translogPath).collect(Collectors.toList());
-
         // Delete is async. Give time for it
-        assertBusy(() -> assertEquals(translogPostSnapshot2.size(), translogPostDeletionOfSnapshot1.size()), 60, TimeUnit.SECONDS);
-        assertBusy(() -> assertEquals(segmentsPostSnapshot2.size(), segmentsPostDeletionOfSnapshot1.size()), 60, TimeUnit.SECONDS);
+        assertBusy(() -> {
+            List<Path> segmentsPostDeletionOfSnapshot1 = Files.list(segmentsPath).collect(Collectors.toList());
+            assertTrue(segmentsPostDeletionOfSnapshot1.size() < segmentsPostSnapshot2.size());
+        }, 60, TimeUnit.SECONDS);
+        // To uncomment following, we need to handle deletion of generations in translog cleanup flow
+        // List<Path> translogPostDeletionOfSnapshot1 = Files.list(translogPath).collect(Collectors.toList());
+        // Delete is async. Give time for it
+        // assertBusy(() -> assertEquals(translogPostSnapshot2.size() - translogPostSnapshot1.size(),
+        // translogPostDeletionOfSnapshot1.size()), 60, TimeUnit.SECONDS);
     }
 
     private Settings snapshotV2Settings(Path remoteStoreRepoPath) {