From 62ff9b10521b974c367718906ad69a9a06d5f12b Mon Sep 17 00:00:00 2001 From: Stephan Preibisch Date: Wed, 31 Jul 2024 09:41:12 -0400 Subject: [PATCH] add some comments --- .../client/multisem/RecapKensAlignment.java | 17 ++++++++++++++++- 1 file changed, 16 insertions(+), 1 deletion(-) diff --git a/render-ws-java-client/src/main/java/org/janelia/render/client/multisem/RecapKensAlignment.java b/render-ws-java-client/src/main/java/org/janelia/render/client/multisem/RecapKensAlignment.java index 794153798..75f3d36fb 100644 --- a/render-ws-java-client/src/main/java/org/janelia/render/client/multisem/RecapKensAlignment.java +++ b/render-ws-java-client/src/main/java/org/janelia/render/client/multisem/RecapKensAlignment.java @@ -70,7 +70,9 @@ public static void reconstruct( final int slab ) // needs to go into Render (the wrong, inverse version Thomas did) + // // Stitching + // System.out.println( "\nSTITCHING" ); for ( int zIndex = 0; zIndex < numSlices; ++zIndex ) @@ -134,6 +136,8 @@ public static void reconstruct( final int slab ) final TransformedZLayer tzl = new TransformedZLayer(); tzl.transformedImages = modelsZ; + + // if we wanted to render, should be zero-min with the following size tzl.width = size[ 0 ]; tzl.height = size[ 1 ]; @@ -141,7 +145,9 @@ public static void reconstruct( final int slab ) } - // Rigid registration + // + // Rigid registration (Register_Virtual_Stack) + // System.out.println( "\nRIGID REGISTRATION" ); // this directory contains all XML's of FIJI Register_Virtual_Stack_MT @@ -234,6 +240,15 @@ else if ( mpicbg.trakem2.transform.AffineModel2D.class.isInstance( m ) ) b.y -= commonBounds.y; // strictly positive */ } + + // if we wanted to render, should be zero-min with the following size + final int slabWidth = commonBounds.width; + final int slabHeight = commonBounds.height; + + + // + // Global Rotation + // } public static void main( String[] args )