pom.xml

<?xml version="1.0" encoding="UTF-8"?>

<project
        xmlns="http://maven.apache.org/POM/4.0.0"
        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
        xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>

    <modelVersion>4.0.0</modelVersion>
    <groupId>doc-code-analysis</groupId>
    <artifactId>upDoc</artifactId>
    <version>1.1.0-alpha</version>
    <!-- Output to jar format -->
    <packaging>jar</packaging>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
    </properties>

    <dependencies>
        <dependency>
            <groupId>junit</groupId>
            <artifactId>junit</artifactId>
            <version>4.11</version>
            <scope>test</scope>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.jacoco/jacoco-maven-plugin -->
        <dependency>
            <groupId>org.jacoco</groupId>
            <artifactId>jacoco-maven-plugin</artifactId>
            <version>0.8.8</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/com.github.javaparser/javaparser-core -->
        <dependency>
            <groupId>com.github.javaparser</groupId>
            <artifactId>javaparser-core</artifactId>
            <version>3.15.18</version>
        </dependency>
        <dependency>
            <groupId>edu.stanford.nlp</groupId>
            <artifactId>stanford-corenlp</artifactId>
            <version>4.4.0</version>
        </dependency>
        <dependency>
            <groupId>edu.stanford.nlp</groupId>
            <artifactId>stanford-corenlp</artifactId>
            <version>4.4.0</version>
            <classifier>models</classifier>
        </dependency>
        <!-- added because of the models dependency above -->
        <dependency>
            <groupId>ch.qos.logback</groupId>
            <artifactId>logback-classic</artifactId>
            <version>1.2.7</version>
        </dependency>
        <dependency>
            <!-- jsoup HTML parser library @ https://jsoup.org/ -->
            <!-- to clean up javadoc description before lemmatizing -->
            <groupId>org.jsoup</groupId>
            <artifactId>jsoup</artifactId>
            <version>1.14.2</version>
        </dependency>
        <!-- for BoW representation of comments-->
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-collections4</artifactId>
            <version>4.4</version>
        </dependency>
        <dependency>
            <groupId>org.apache.commons</groupId>
            <artifactId>commons-text</artifactId>
            <version>1.8</version>
        </dependency>
        <!-- https://maven.pkg.github.com/gumtreediff/gumtree/* -->
        <dependency>
            <groupId>com.github.gumtreediff</groupId>
            <artifactId>client</artifactId>
            <version>3.0.0-beta2</version>
        </dependency>
        <dependency>
            <groupId>com.github.gumtreediff</groupId>
            <artifactId>core</artifactId>
            <version>3.0.0-beta2</version>
        </dependency>
        <dependency>
            <groupId>com.github.gumtreediff</groupId>
            <artifactId>gen.javaparser</artifactId>
            <version>3.0.0-beta2</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.deeplearning4j/deeplearning4j-core -->
        <dependency>
            <groupId>org.deeplearning4j</groupId>
            <artifactId>deeplearning4j-core</artifactId>
            <version>1.0.0-beta7</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/org.deeplearning4j/deeplearning4j-nlp -->
        <dependency>
            <groupId>org.deeplearning4j</groupId>
            <artifactId>deeplearning4j-nlp</artifactId>
            <version>1.0.0-beta7</version>
        </dependency>
        <dependency>
            <groupId>org.nd4j</groupId>
            <artifactId>nd4j-native</artifactId>
            <version>1.0.0-beta7</version>
        </dependency>
        <!-- https://mvnrepository.com/artifact/de.jungblut.glove/glove -->
        <dependency>
            <groupId>de.jungblut.glove</groupId>
            <artifactId>glove</artifactId>
            <version>0.3</version>
        </dependency>
        <!-- A library for tokenising Java identifier names  -->
        <!-- https://mvnrepository.com/artifact/uk.org.facetus/intt -->
        <dependency>
            <groupId>uk.org.facetus</groupId>
            <artifactId>intt</artifactId>
            <version>0.8.11</version>
        </dependency>
    </dependencies>

    <build>
        <plugins>
            <plugin>
                <groupId>org.jacoco</groupId>
                <artifactId>jacoco-maven-plugin</artifactId>
                <version>0.8.8</version>
                <executions>
                    <execution>
                        <goals>
                            <goal>prepare-agent</goal>
                        </goals>
                    </execution>
                    <execution>
                        <!-- This will run the jacoco:report goal when running mvn package -->
                        <id>report</id>
                        <phase>prepare-package</phase>
                        <goals>
                            <goal>report</goal>
                        </goals>
                        <configuration>
                            <outputDirectory>${project.build.directory}/jacoco</outputDirectory>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <!-- produce a standalone executable jar with all dependencies -->
                <!-- see https://www.baeldung.com/executable-jar-with-maven -->
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-assembly-plugin</artifactId>
                <version>3.2.0</version>
                <executions>
                    <execution>
                        <phase>package</phase>
                        <goals>
                            <goal>single</goal>
                        </goals>
                        <configuration>
                            <archive>
                                <manifest>
                                    <mainClass>
                                        upDoc
                                    </mainClass>
                                </manifest>
                            </archive>
                            <descriptorRefs>
                                <descriptorRef>jar-with-dependencies</descriptorRef>
                            </descriptorRefs>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <!-- compile sources -->
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.6.2</version>
                <configuration>
                    <source>11</source>
                    <target>11</target>
                </configuration>
            </plugin>
            <!-- For downloading and unzipping WMD models -->
            <!-- NOTE: if for any reason these tasks fail, just follow the URL and
            download + unzip the models manually. The unzipped .txt model (it is a single file)
            must be under src/main/resources-->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-antrun-plugin</artifactId>
                <executions>
                    <execution>
                        <id>download-files</id>
                        <phase>prepare-package</phase>
                        <goals>
                            <goal>run</goal>
                        </goals>
                        <configuration>
                            <tasks>
                                <!-- download file -->
                                <get src="https://star-rep.inf.usi.ch/alberto/glove/raw/master/glove-models.zip"
                                     dest="${project.build.directory}/downloads/"
                                     verbose="false"
                                     usetimestamp="true"/>
                                <!-- unzip file -->
                                <unzip src="${project.build.directory}/downloads/"
                                       dest="${project.basedir}/src/main/resources"/>
                            </tasks>
                        </configuration>
                    </execution>
                </executions>
            </plugin>
            <!-- To pass parameters to the tests: we use it to activate semantic WMD matching -->
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <configuration>
                    <systemProperties>
                        <property>
                            <name>useWMD</name>
                            <!--suppress UnresolvedMavenProperty -->
                            <value>${useWMD}</value>
                        </property>
                    </systemProperties>
                </configuration>
            </plugin>
        </plugins>
    </build>

</project>