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Makefile.am
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Makefile.am
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ACLOCAL_AMFLAGS=-I m4
SUBDIRS = src lib Doc
## doxygen documentation
include $(top_srcdir)/Doc/doxygen.am
matrices_DATA=\
Data/Matrices/RIBOSUM85_60
#Data/Matrices/RIBOSUM100_25 Data/Matrices/RIBOSUM100_30 \
Data/Matrices/RIBOSUM100_35 Data/Matrices/RIBOSUM100_40 \
Data/Matrices/RIBOSUM100_45 Data/Matrices/RIBOSUM100_50 \
Data/Matrices/RIBOSUM100_55 Data/Matrices/RIBOSUM100_60 \
Data/Matrices/RIBOSUM100_65 Data/Matrices/RIBOSUM100_70 \
Data/Matrices/RIBOSUM100_75 Data/Matrices/RIBOSUM100_80 \
Data/Matrices/RIBOSUM100_85 Data/Matrices/RIBOSUM100_90 \
Data/Matrices/RIBOSUM100_95 Data/Matrices/RIBOSUM45_25 \
Data/Matrices/RIBOSUM45_30 Data/Matrices/RIBOSUM45_35 \
Data/Matrices/RIBOSUM45_40 Data/Matrices/RIBOSUM45_45 \
Data/Matrices/RIBOSUM45_50 Data/Matrices/RIBOSUM45_55 \
Data/Matrices/RIBOSUM45_60 Data/Matrices/RIBOSUM45_65 \
Data/Matrices/RIBOSUM45_70 Data/Matrices/RIBOSUM45_75 \
Data/Matrices/RIBOSUM45_80 Data/Matrices/RIBOSUM45_85 \
Data/Matrices/RIBOSUM45_90 Data/Matrices/RIBOSUM45_95 \
Data/Matrices/RIBOSUM50_25 Data/Matrices/RIBOSUM50_30 \
Data/Matrices/RIBOSUM50_35 Data/Matrices/RIBOSUM50_40 \
Data/Matrices/RIBOSUM50_45 Data/Matrices/RIBOSUM50_50 \
Data/Matrices/RIBOSUM50_55 Data/Matrices/RIBOSUM50_60 \
Data/Matrices/RIBOSUM50_65 Data/Matrices/RIBOSUM50_70 \
Data/Matrices/RIBOSUM50_75 Data/Matrices/RIBOSUM50_80 \
Data/Matrices/RIBOSUM50_85 Data/Matrices/RIBOSUM50_90 \
Data/Matrices/RIBOSUM50_95 Data/Matrices/RIBOSUM55_25 \
Data/Matrices/RIBOSUM55_30 Data/Matrices/RIBOSUM55_35 \
Data/Matrices/RIBOSUM55_40 Data/Matrices/RIBOSUM55_45 \
Data/Matrices/RIBOSUM55_50 Data/Matrices/RIBOSUM55_55 \
Data/Matrices/RIBOSUM55_60 Data/Matrices/RIBOSUM55_65 \
Data/Matrices/RIBOSUM55_70 Data/Matrices/RIBOSUM55_75 \
Data/Matrices/RIBOSUM55_80 Data/Matrices/RIBOSUM55_85 \
Data/Matrices/RIBOSUM55_90 Data/Matrices/RIBOSUM55_95 \
Data/Matrices/RIBOSUM60_25 Data/Matrices/RIBOSUM60_30 \
Data/Matrices/RIBOSUM60_35 Data/Matrices/RIBOSUM60_40 \
Data/Matrices/RIBOSUM60_45 Data/Matrices/RIBOSUM60_50 \
Data/Matrices/RIBOSUM60_55 Data/Matrices/RIBOSUM60_60 \
Data/Matrices/RIBOSUM60_65 Data/Matrices/RIBOSUM60_70 \
Data/Matrices/RIBOSUM60_75 Data/Matrices/RIBOSUM60_80 \
Data/Matrices/RIBOSUM60_85 Data/Matrices/RIBOSUM60_90 \
Data/Matrices/RIBOSUM60_95 Data/Matrices/RIBOSUM65_25 \
Data/Matrices/RIBOSUM65_30 Data/Matrices/RIBOSUM65_35 \
Data/Matrices/RIBOSUM65_40 Data/Matrices/RIBOSUM65_45 \
Data/Matrices/RIBOSUM65_50 Data/Matrices/RIBOSUM65_55 \
Data/Matrices/RIBOSUM65_60 Data/Matrices/RIBOSUM65_65 \
Data/Matrices/RIBOSUM65_70 Data/Matrices/RIBOSUM65_75 \
Data/Matrices/RIBOSUM65_80 Data/Matrices/RIBOSUM65_85 \
Data/Matrices/RIBOSUM65_90 Data/Matrices/RIBOSUM65_95 \
Data/Matrices/RIBOSUM70_25 Data/Matrices/RIBOSUM70_30 \
Data/Matrices/RIBOSUM70_35 Data/Matrices/RIBOSUM70_40 \
Data/Matrices/RIBOSUM70_45 Data/Matrices/RIBOSUM70_50 \
Data/Matrices/RIBOSUM70_55 Data/Matrices/RIBOSUM70_60 \
Data/Matrices/RIBOSUM70_65 Data/Matrices/RIBOSUM70_70 \
Data/Matrices/RIBOSUM70_75 Data/Matrices/RIBOSUM70_80 \
Data/Matrices/RIBOSUM70_85 Data/Matrices/RIBOSUM70_90 \
Data/Matrices/RIBOSUM70_95 Data/Matrices/RIBOSUM75_25 \
Data/Matrices/RIBOSUM75_30 Data/Matrices/RIBOSUM75_35 \
Data/Matrices/RIBOSUM75_40 Data/Matrices/RIBOSUM75_45 \
Data/Matrices/RIBOSUM75_50 Data/Matrices/RIBOSUM75_55 \
Data/Matrices/RIBOSUM75_60 Data/Matrices/RIBOSUM75_65 \
Data/Matrices/RIBOSUM75_70 Data/Matrices/RIBOSUM75_75 \
Data/Matrices/RIBOSUM75_80 Data/Matrices/RIBOSUM75_85 \
Data/Matrices/RIBOSUM75_90 Data/Matrices/RIBOSUM75_95 \
Data/Matrices/RIBOSUM80_25 Data/Matrices/RIBOSUM80_30 \
Data/Matrices/RIBOSUM80_35 Data/Matrices/RIBOSUM80_40 \
Data/Matrices/RIBOSUM80_45 Data/Matrices/RIBOSUM80_50 \
Data/Matrices/RIBOSUM80_55 Data/Matrices/RIBOSUM80_60 \
Data/Matrices/RIBOSUM80_65 Data/Matrices/RIBOSUM80_70 \
Data/Matrices/RIBOSUM80_75 Data/Matrices/RIBOSUM80_80 \
Data/Matrices/RIBOSUM80_85 Data/Matrices/RIBOSUM80_90 \
Data/Matrices/RIBOSUM80_95 Data/Matrices/RIBOSUM85_25 \
Data/Matrices/RIBOSUM85_30 Data/Matrices/RIBOSUM85_35 \
Data/Matrices/RIBOSUM85_40 Data/Matrices/RIBOSUM85_45 \
Data/Matrices/RIBOSUM85_50 Data/Matrices/RIBOSUM85_55 \
Data/Matrices/RIBOSUM85_60 Data/Matrices/RIBOSUM85_65 \
Data/Matrices/RIBOSUM85_70 Data/Matrices/RIBOSUM85_75 \
Data/Matrices/RIBOSUM85_80 Data/Matrices/RIBOSUM85_85 \
Data/Matrices/RIBOSUM85_90 Data/Matrices/RIBOSUM85_95 \
Data/Matrices/RIBOSUM90_25 Data/Matrices/RIBOSUM90_30 \
Data/Matrices/RIBOSUM90_35 Data/Matrices/RIBOSUM90_40 \
Data/Matrices/RIBOSUM90_45 Data/Matrices/RIBOSUM90_50 \
Data/Matrices/RIBOSUM90_55 Data/Matrices/RIBOSUM90_60 \
Data/Matrices/RIBOSUM90_65 Data/Matrices/RIBOSUM90_70 \
Data/Matrices/RIBOSUM90_75 Data/Matrices/RIBOSUM90_80 \
Data/Matrices/RIBOSUM90_85 Data/Matrices/RIBOSUM90_90 \
Data/Matrices/RIBOSUM90_95 Data/Matrices/RIBOSUM95_25 \
Data/Matrices/RIBOSUM95_30 Data/Matrices/RIBOSUM95_35 \
Data/Matrices/RIBOSUM95_40 Data/Matrices/RIBOSUM95_45 \
Data/Matrices/RIBOSUM95_50 Data/Matrices/RIBOSUM95_55 \
Data/Matrices/RIBOSUM95_60 Data/Matrices/RIBOSUM95_65 \
Data/Matrices/RIBOSUM95_70 Data/Matrices/RIBOSUM95_75 \
Data/Matrices/RIBOSUM95_80 Data/Matrices/RIBOSUM95_85 \
Data/Matrices/RIBOSUM95_90 Data/Matrices/RIBOSUM95_95
matricesdir = $(prefix)/share/locarna/Matrices
benchmark = all.tgz instances.k2-all README instances.k10-all \
instances.k2-sel-high_apsi structure-annotation instances.k10-sel \
instances.k2-sel-low_apsi
benchmarkdata = $(benchmark:%=Data/Bralibase2.1/%)
EXTRA_DIST= Data/Examples/archaea.fa Data/Examples/ferritin.fa \
Data/Examples/human.fa Data/Examples/mouse.fa \
Data/Examples/haca.snoRNA.fa \
Data/Examples/haca.snoRNA_anchor.bed \
Data/Examples/hammerhead_3.fa Data/Examples/gcvT.fa \
Data/Examples/SECIS_15.fa Data/Examples/SECIS_15_ref.aln \
Data/Examples/example.fa Data/Examples/short-example.cfg \
Data/Examples/example.cfg \
Data/Examples/example-w-constraints.fa \
Data/Examples/example-wo-anchors.fa \
Data/Examples/example-realign.aln \
Data/Examples/example-anchors.bed $(matrices_DATA) \
$(benchmarkdata) Doc/doxygen.cfg
gen-test-results:
make -C src/Tests gen-test-results