From e5c3505897483838c0e233c2e1d67a343730ed07 Mon Sep 17 00:00:00 2001 From: Simon Andrews Date: Wed, 1 Mar 2023 13:29:12 +0000 Subject: [PATCH] Updated release notes for latest changes. --- RELEASE_NOTES.txt | 13 +++++++++++-- 1 file changed, 11 insertions(+), 2 deletions(-) diff --git a/RELEASE_NOTES.txt b/RELEASE_NOTES.txt index 1523d2c..58aec7b 100644 --- a/RELEASE_NOTES.txt +++ b/RELEASE_NOTES.txt @@ -13,7 +13,15 @@ existing problems. - Add a "dup_length" option to specify the length of sequence used for detecting duplicates -- Fix a bug in iterating through fast5 files in multiple directories + - Made the default duplicate detection length 50bp, regardless of + the length of the library. Previously only sequences over 75bp + were truncated, now the limit applies to everything + + - Removed the plot of deduplicated duplication levels from the + duplication plot since it just confused people and everyone ignored + it. + +- Fixed a bug in iterating through fast5 files in multiple directories - Fixed a documentation bug in the Duplicate plot @@ -36,7 +44,8 @@ existing problems. processing (add --delete on top of --extract) - The default adapters removed the SOLID adapter, but added polyA - and polyG since these can both provide useful information + and polyG since these can both provide useful information and are + often trimmed from sequences in a similar manner to adapters.