From b2feefa8bba752b34432e739361bdfb3804daff4 Mon Sep 17 00:00:00 2001
From: andrewss <andrewss@bi1961m.babraham.ac.uk>
Date: Wed, 8 Jan 2020 13:53:32 +0000
Subject: [PATCH] Add debugging message for non default java location

---
 fastqc | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/fastqc b/fastqc
index 85cf00d..eb52c8d 100755
--- a/fastqc
+++ b/fastqc
@@ -256,6 +256,8 @@ if ($format) {
 }
 
 if ($java_bin ne 'java') {
+
+	warn "Java is $java_bin\n";
 #	$java_bin =~ s/\\/\//g;
 	
 	unless (-e $java_bin) {