This document describes a typical use of the antaresRead package.
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This package has been designed to read the results of an Antares simulation in an easy and convivial way. It can of course read any output files of a simulation at any desired time step, read synthetic results or detailed Monte Carlo scenarios but it can also add input time series to the results and perform some basic treatments like removing virtual areas.
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-Installation
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The antaresRead package depends on the packages data.table, plyr and lubridate. If you have not already got them you can install them with the following command:
Then you can start using the package. The first function to use is setSimulationPath.
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This function needs to be called at least once during each R session. It stores important informations that are used by most of the functions of the package. While it has not been run, these functions will not work.
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Without any argument, setSimulationPath asks interactively to choose a directory containing an antares study. If the study contains multiple simulation results, it will also asks the user to choose one of them. This function stores the path to the output and reads some useful information about the simulation: type of output available, list of areas, links and clusters in the simulation, variables present in the output files, etc.
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setSimulationPath can also be used in a non-interactive way with one of these syntaxes:
The function returns an object containing informations about the selected simulation. You can store this object in a variable for later use but this is not necessary because at any moment you can retrieve these informations.
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-Reading time series
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Once setSimulationPath has been run, you can start reading data. Function readAntares is there for that !
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readAntares is the main function of the package. It is used to read every possible time series and it performs a few treatments on them to make your life easier. The result of the function will have the simplest structure possible: either a simple table or a list of tables if you asks data for differents elements (for instance links and areas)
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It has a huge number of parameters to control exactly what you get, but all of them are optional. Without any argument the function will still works and it will read the synthetic results for all the areas. But you can import other kind of output. here are some examples:
You can also choose what elements to import and what level of details you want. For instance, the following command reads the first 10 Monte-Carlo scenarii data at monthly time step for the areas named “area1”, “area2” and “area3”.
Finally many arguments of readAntares can be used to add input time series to the object returned by the function. For instance, misc=TRUE will add columns containing miscelaneous productions for the imported areas.
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-Manipulating data
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readAntares returns either a single table or a list of tables depending on the query of the user. More precisely the tables are data.table objects. It is then possible to use the powerful syntax offered by the package data.table.
For instance, areas[area == "08_fr", .(timeId, LOAD)] will return a table containing columns timeId and LOAD for the area names “08_fr”. In the select statement, it is also possible to calculate new columns. For instance, one can compute the net load like this:
readAntares can import almost everything but not everything because some data is not time series. Other functions exist to read this specific data: readBindingConstraints to read binding constraints, readClusterDesc to read cluster characteristics and readLayout to get the coordinates of the areas in the user interface of Antares.
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Some parameters in readAntares and other functions wait for vectors of area names or link names. On large projects with lots of areas. It may be painful to specify by hand a long list of areas or links. Hopefully, the functions getAreasand getLinks can be used to select or exclude areas using regular expressions. For instance, let us assume that the name of all areas located in France start with the characters“fr”, then the following command returns the list of all french areas:
With h5 file, antaresRead will be running faster. Your reading will take between 2 and 4 times less time. An other avantage is the compression, a study can pass from 15Go in txt to 2.5Go in h5. Furthermore, a h5 transformation convert lot of txt file in a single h5 file, it will be easier to move it, a copy/paste of a study with 137 thousand files (15Go) takes 45 minutes in txt and 30 seconds in h5.
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Finally, you can use in the same way function of antaresProcessing and antaresViz packages. You can also use addProcessingH5 function to add columns to your h5 file.
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Comparaison between Conventional and H5
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Write h5 file from antares study
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The function writeAntaresH5 is used to write h5 file from antares output. You can add inputs data like in readAntares.
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-_fnSortFlatten:X,_fnSort:nb,_fnSortAria:Jb,_fnSortListener:Va,_fnSortAttachListener:Ma,_fnSortingClasses:wa,_fnSortData:Ib,_fnSaveState:xa,_fnLoadState:Kb,_fnSettingsFromNode:ya,_fnLog:K,_fnMap:F,_fnBindAction:Wa,_fnCallbackReg:z,_fnCallbackFire:r,_fnLengthOverflow:Sa,_fnRenderer:Na,_fnDataSource:y,_fnRowAttributes:La,_fnExtend:Xa,_fnCalculateEnd:function(){}});h.fn.dataTable=n;n.$=h;h.fn.dataTableSettings=n.settings;h.fn.dataTableExt=n.ext;h.fn.DataTable=function(a){return h(this).dataTable(a).api()};
-h.each(n,function(a,b){h.fn.DataTable[a]=b});return h.fn.dataTable});
diff --git a/docs/articles/antaresH5_files/htmlwidgets-1.5.1/htmlwidgets.js b/docs/articles/antaresH5_files/htmlwidgets-1.5.1/htmlwidgets.js
deleted file mode 100644
index 6f3d672d..00000000
--- a/docs/articles/antaresH5_files/htmlwidgets-1.5.1/htmlwidgets.js
+++ /dev/null
@@ -1,903 +0,0 @@
-(function() {
- // If window.HTMLWidgets is already defined, then use it; otherwise create a
- // new object. This allows preceding code to set options that affect the
- // initialization process (though none currently exist).
- window.HTMLWidgets = window.HTMLWidgets || {};
-
- // See if we're running in a viewer pane. If not, we're in a web browser.
- var viewerMode = window.HTMLWidgets.viewerMode =
- /\bviewer_pane=1\b/.test(window.location);
-
- // See if we're running in Shiny mode. If not, it's a static document.
- // Note that static widgets can appear in both Shiny and static modes, but
- // obviously, Shiny widgets can only appear in Shiny apps/documents.
- var shinyMode = window.HTMLWidgets.shinyMode =
- typeof(window.Shiny) !== "undefined" && !!window.Shiny.outputBindings;
-
- // We can't count on jQuery being available, so we implement our own
- // version if necessary.
- function querySelectorAll(scope, selector) {
- if (typeof(jQuery) !== "undefined" && scope instanceof jQuery) {
- return scope.find(selector);
- }
- if (scope.querySelectorAll) {
- return scope.querySelectorAll(selector);
- }
- }
-
- function asArray(value) {
- if (value === null)
- return [];
- if ($.isArray(value))
- return value;
- return [value];
- }
-
- // Implement jQuery's extend
- function extend(target /*, ... */) {
- if (arguments.length == 1) {
- return target;
- }
- for (var i = 1; i < arguments.length; i++) {
- var source = arguments[i];
- for (var prop in source) {
- if (source.hasOwnProperty(prop)) {
- target[prop] = source[prop];
- }
- }
- }
- return target;
- }
-
- // IE8 doesn't support Array.forEach.
- function forEach(values, callback, thisArg) {
- if (values.forEach) {
- values.forEach(callback, thisArg);
- } else {
- for (var i = 0; i < values.length; i++) {
- callback.call(thisArg, values[i], i, values);
- }
- }
- }
-
- // Replaces the specified method with the return value of funcSource.
- //
- // Note that funcSource should not BE the new method, it should be a function
- // that RETURNS the new method. funcSource receives a single argument that is
- // the overridden method, it can be called from the new method. The overridden
- // method can be called like a regular function, it has the target permanently
- // bound to it so "this" will work correctly.
- function overrideMethod(target, methodName, funcSource) {
- var superFunc = target[methodName] || function() {};
- var superFuncBound = function() {
- return superFunc.apply(target, arguments);
- };
- target[methodName] = funcSource(superFuncBound);
- }
-
- // Add a method to delegator that, when invoked, calls
- // delegatee.methodName. If there is no such method on
- // the delegatee, but there was one on delegator before
- // delegateMethod was called, then the original version
- // is invoked instead.
- // For example:
- //
- // var a = {
- // method1: function() { console.log('a1'); }
- // method2: function() { console.log('a2'); }
- // };
- // var b = {
- // method1: function() { console.log('b1'); }
- // };
- // delegateMethod(a, b, "method1");
- // delegateMethod(a, b, "method2");
- // a.method1();
- // a.method2();
- //
- // The output would be "b1", "a2".
- function delegateMethod(delegator, delegatee, methodName) {
- var inherited = delegator[methodName];
- delegator[methodName] = function() {
- var target = delegatee;
- var method = delegatee[methodName];
-
- // The method doesn't exist on the delegatee. Instead,
- // call the method on the delegator, if it exists.
- if (!method) {
- target = delegator;
- method = inherited;
- }
-
- if (method) {
- return method.apply(target, arguments);
- }
- };
- }
-
- // Implement a vague facsimilie of jQuery's data method
- function elementData(el, name, value) {
- if (arguments.length == 2) {
- return el["htmlwidget_data_" + name];
- } else if (arguments.length == 3) {
- el["htmlwidget_data_" + name] = value;
- return el;
- } else {
- throw new Error("Wrong number of arguments for elementData: " +
- arguments.length);
- }
- }
-
- // http://stackoverflow.com/questions/3446170/escape-string-for-use-in-javascript-regex
- function escapeRegExp(str) {
- return str.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g, "\\$&");
- }
-
- function hasClass(el, className) {
- var re = new RegExp("\\b" + escapeRegExp(className) + "\\b");
- return re.test(el.className);
- }
-
- // elements - array (or array-like object) of HTML elements
- // className - class name to test for
- // include - if true, only return elements with given className;
- // if false, only return elements *without* given className
- function filterByClass(elements, className, include) {
- var results = [];
- for (var i = 0; i < elements.length; i++) {
- if (hasClass(elements[i], className) == include)
- results.push(elements[i]);
- }
- return results;
- }
-
- function on(obj, eventName, func) {
- if (obj.addEventListener) {
- obj.addEventListener(eventName, func, false);
- } else if (obj.attachEvent) {
- obj.attachEvent(eventName, func);
- }
- }
-
- function off(obj, eventName, func) {
- if (obj.removeEventListener)
- obj.removeEventListener(eventName, func, false);
- else if (obj.detachEvent) {
- obj.detachEvent(eventName, func);
- }
- }
-
- // Translate array of values to top/right/bottom/left, as usual with
- // the "padding" CSS property
- // https://developer.mozilla.org/en-US/docs/Web/CSS/padding
- function unpackPadding(value) {
- if (typeof(value) === "number")
- value = [value];
- if (value.length === 1) {
- return {top: value[0], right: value[0], bottom: value[0], left: value[0]};
- }
- if (value.length === 2) {
- return {top: value[0], right: value[1], bottom: value[0], left: value[1]};
- }
- if (value.length === 3) {
- return {top: value[0], right: value[1], bottom: value[2], left: value[1]};
- }
- if (value.length === 4) {
- return {top: value[0], right: value[1], bottom: value[2], left: value[3]};
- }
- }
-
- // Convert an unpacked padding object to a CSS value
- function paddingToCss(paddingObj) {
- return paddingObj.top + "px " + paddingObj.right + "px " + paddingObj.bottom + "px " + paddingObj.left + "px";
- }
-
- // Makes a number suitable for CSS
- function px(x) {
- if (typeof(x) === "number")
- return x + "px";
- else
- return x;
- }
-
- // Retrieves runtime widget sizing information for an element.
- // The return value is either null, or an object with fill, padding,
- // defaultWidth, defaultHeight fields.
- function sizingPolicy(el) {
- var sizingEl = document.querySelector("script[data-for='" + el.id + "'][type='application/htmlwidget-sizing']");
- if (!sizingEl)
- return null;
- var sp = JSON.parse(sizingEl.textContent || sizingEl.text || "{}");
- if (viewerMode) {
- return sp.viewer;
- } else {
- return sp.browser;
- }
- }
-
- // @param tasks Array of strings (or falsy value, in which case no-op).
- // Each element must be a valid JavaScript expression that yields a
- // function. Or, can be an array of objects with "code" and "data"
- // properties; in this case, the "code" property should be a string
- // of JS that's an expr that yields a function, and "data" should be
- // an object that will be added as an additional argument when that
- // function is called.
- // @param target The object that will be "this" for each function
- // execution.
- // @param args Array of arguments to be passed to the functions. (The
- // same arguments will be passed to all functions.)
- function evalAndRun(tasks, target, args) {
- if (tasks) {
- forEach(tasks, function(task) {
- var theseArgs = args;
- if (typeof(task) === "object") {
- theseArgs = theseArgs.concat([task.data]);
- task = task.code;
- }
- var taskFunc = tryEval(task);
- if (typeof(taskFunc) !== "function") {
- throw new Error("Task must be a function! Source:\n" + task);
- }
- taskFunc.apply(target, theseArgs);
- });
- }
- }
-
- // Attempt eval() both with and without enclosing in parentheses.
- // Note that enclosing coerces a function declaration into
- // an expression that eval() can parse
- // (otherwise, a SyntaxError is thrown)
- function tryEval(code) {
- var result = null;
- try {
- result = eval(code);
- } catch(error) {
- if (!error instanceof SyntaxError) {
- throw error;
- }
- try {
- result = eval("(" + code + ")");
- } catch(e) {
- if (e instanceof SyntaxError) {
- throw error;
- } else {
- throw e;
- }
- }
- }
- return result;
- }
-
- function initSizing(el) {
- var sizing = sizingPolicy(el);
- if (!sizing)
- return;
-
- var cel = document.getElementById("htmlwidget_container");
- if (!cel)
- return;
-
- if (typeof(sizing.padding) !== "undefined") {
- document.body.style.margin = "0";
- document.body.style.padding = paddingToCss(unpackPadding(sizing.padding));
- }
-
- if (sizing.fill) {
- document.body.style.overflow = "hidden";
- document.body.style.width = "100%";
- document.body.style.height = "100%";
- document.documentElement.style.width = "100%";
- document.documentElement.style.height = "100%";
- if (cel) {
- cel.style.position = "absolute";
- var pad = unpackPadding(sizing.padding);
- cel.style.top = pad.top + "px";
- cel.style.right = pad.right + "px";
- cel.style.bottom = pad.bottom + "px";
- cel.style.left = pad.left + "px";
- el.style.width = "100%";
- el.style.height = "100%";
- }
-
- return {
- getWidth: function() { return cel.offsetWidth; },
- getHeight: function() { return cel.offsetHeight; }
- };
-
- } else {
- el.style.width = px(sizing.width);
- el.style.height = px(sizing.height);
-
- return {
- getWidth: function() { return el.offsetWidth; },
- getHeight: function() { return el.offsetHeight; }
- };
- }
- }
-
- // Default implementations for methods
- var defaults = {
- find: function(scope) {
- return querySelectorAll(scope, "." + this.name);
- },
- renderError: function(el, err) {
- var $el = $(el);
-
- this.clearError(el);
-
- // Add all these error classes, as Shiny does
- var errClass = "shiny-output-error";
- if (err.type !== null) {
- // use the classes of the error condition as CSS class names
- errClass = errClass + " " + $.map(asArray(err.type), function(type) {
- return errClass + "-" + type;
- }).join(" ");
- }
- errClass = errClass + " htmlwidgets-error";
-
- // Is el inline or block? If inline or inline-block, just display:none it
- // and add an inline error.
- var display = $el.css("display");
- $el.data("restore-display-mode", display);
-
- if (display === "inline" || display === "inline-block") {
- $el.hide();
- if (err.message !== "") {
- var errorSpan = $("").addClass(errClass);
- errorSpan.text(err.message);
- $el.after(errorSpan);
- }
- } else if (display === "block") {
- // If block, add an error just after the el, set visibility:none on the
- // el, and position the error to be on top of the el.
- // Mark it with a unique ID and CSS class so we can remove it later.
- $el.css("visibility", "hidden");
- if (err.message !== "") {
- var errorDiv = $("
").addClass(errClass).css("position", "absolute")
- .css("top", el.offsetTop)
- .css("left", el.offsetLeft)
- // setting width can push out the page size, forcing otherwise
- // unnecessary scrollbars to appear and making it impossible for
- // the element to shrink; so use max-width instead
- .css("maxWidth", el.offsetWidth)
- .css("height", el.offsetHeight);
- errorDiv.text(err.message);
- $el.after(errorDiv);
-
- // Really dumb way to keep the size/position of the error in sync with
- // the parent element as the window is resized or whatever.
- var intId = setInterval(function() {
- if (!errorDiv[0].parentElement) {
- clearInterval(intId);
- return;
- }
- errorDiv
- .css("top", el.offsetTop)
- .css("left", el.offsetLeft)
- .css("maxWidth", el.offsetWidth)
- .css("height", el.offsetHeight);
- }, 500);
- }
- }
- },
- clearError: function(el) {
- var $el = $(el);
- var display = $el.data("restore-display-mode");
- $el.data("restore-display-mode", null);
-
- if (display === "inline" || display === "inline-block") {
- if (display)
- $el.css("display", display);
- $(el.nextSibling).filter(".htmlwidgets-error").remove();
- } else if (display === "block"){
- $el.css("visibility", "inherit");
- $(el.nextSibling).filter(".htmlwidgets-error").remove();
- }
- },
- sizing: {}
- };
-
- // Called by widget bindings to register a new type of widget. The definition
- // object can contain the following properties:
- // - name (required) - A string indicating the binding name, which will be
- // used by default as the CSS classname to look for.
- // - initialize (optional) - A function(el) that will be called once per
- // widget element; if a value is returned, it will be passed as the third
- // value to renderValue.
- // - renderValue (required) - A function(el, data, initValue) that will be
- // called with data. Static contexts will cause this to be called once per
- // element; Shiny apps will cause this to be called multiple times per
- // element, as the data changes.
- window.HTMLWidgets.widget = function(definition) {
- if (!definition.name) {
- throw new Error("Widget must have a name");
- }
- if (!definition.type) {
- throw new Error("Widget must have a type");
- }
- // Currently we only support output widgets
- if (definition.type !== "output") {
- throw new Error("Unrecognized widget type '" + definition.type + "'");
- }
- // TODO: Verify that .name is a valid CSS classname
-
- // Support new-style instance-bound definitions. Old-style class-bound
- // definitions have one widget "object" per widget per type/class of
- // widget; the renderValue and resize methods on such widget objects
- // take el and instance arguments, because the widget object can't
- // store them. New-style instance-bound definitions have one widget
- // object per widget instance; the definition that's passed in doesn't
- // provide renderValue or resize methods at all, just the single method
- // factory(el, width, height)
- // which returns an object that has renderValue(x) and resize(w, h).
- // This enables a far more natural programming style for the widget
- // author, who can store per-instance state using either OO-style
- // instance fields or functional-style closure variables (I guess this
- // is in contrast to what can only be called C-style pseudo-OO which is
- // what we required before).
- if (definition.factory) {
- definition = createLegacyDefinitionAdapter(definition);
- }
-
- if (!definition.renderValue) {
- throw new Error("Widget must have a renderValue function");
- }
-
- // For static rendering (non-Shiny), use a simple widget registration
- // scheme. We also use this scheme for Shiny apps/documents that also
- // contain static widgets.
- window.HTMLWidgets.widgets = window.HTMLWidgets.widgets || [];
- // Merge defaults into the definition; don't mutate the original definition.
- var staticBinding = extend({}, defaults, definition);
- overrideMethod(staticBinding, "find", function(superfunc) {
- return function(scope) {
- var results = superfunc(scope);
- // Filter out Shiny outputs, we only want the static kind
- return filterByClass(results, "html-widget-output", false);
- };
- });
- window.HTMLWidgets.widgets.push(staticBinding);
-
- if (shinyMode) {
- // Shiny is running. Register the definition with an output binding.
- // The definition itself will not be the output binding, instead
- // we will make an output binding object that delegates to the
- // definition. This is because we foolishly used the same method
- // name (renderValue) for htmlwidgets definition and Shiny bindings
- // but they actually have quite different semantics (the Shiny
- // bindings receive data that includes lots of metadata that it
- // strips off before calling htmlwidgets renderValue). We can't
- // just ignore the difference because in some widgets it's helpful
- // to call this.renderValue() from inside of resize(), and if
- // we're not delegating, then that call will go to the Shiny
- // version instead of the htmlwidgets version.
-
- // Merge defaults with definition, without mutating either.
- var bindingDef = extend({}, defaults, definition);
-
- // This object will be our actual Shiny binding.
- var shinyBinding = new Shiny.OutputBinding();
-
- // With a few exceptions, we'll want to simply use the bindingDef's
- // version of methods if they are available, otherwise fall back to
- // Shiny's defaults. NOTE: If Shiny's output bindings gain additional
- // methods in the future, and we want them to be overrideable by
- // HTMLWidget binding definitions, then we'll need to add them to this
- // list.
- delegateMethod(shinyBinding, bindingDef, "getId");
- delegateMethod(shinyBinding, bindingDef, "onValueChange");
- delegateMethod(shinyBinding, bindingDef, "onValueError");
- delegateMethod(shinyBinding, bindingDef, "renderError");
- delegateMethod(shinyBinding, bindingDef, "clearError");
- delegateMethod(shinyBinding, bindingDef, "showProgress");
-
- // The find, renderValue, and resize are handled differently, because we
- // want to actually decorate the behavior of the bindingDef methods.
-
- shinyBinding.find = function(scope) {
- var results = bindingDef.find(scope);
-
- // Only return elements that are Shiny outputs, not static ones
- var dynamicResults = results.filter(".html-widget-output");
-
- // It's possible that whatever caused Shiny to think there might be
- // new dynamic outputs, also caused there to be new static outputs.
- // Since there might be lots of different htmlwidgets bindings, we
- // schedule execution for later--no need to staticRender multiple
- // times.
- if (results.length !== dynamicResults.length)
- scheduleStaticRender();
-
- return dynamicResults;
- };
-
- // Wrap renderValue to handle initialization, which unfortunately isn't
- // supported natively by Shiny at the time of this writing.
-
- shinyBinding.renderValue = function(el, data) {
- Shiny.renderDependencies(data.deps);
- // Resolve strings marked as javascript literals to objects
- if (!(data.evals instanceof Array)) data.evals = [data.evals];
- for (var i = 0; data.evals && i < data.evals.length; i++) {
- window.HTMLWidgets.evaluateStringMember(data.x, data.evals[i]);
- }
- if (!bindingDef.renderOnNullValue) {
- if (data.x === null) {
- el.style.visibility = "hidden";
- return;
- } else {
- el.style.visibility = "inherit";
- }
- }
- if (!elementData(el, "initialized")) {
- initSizing(el);
-
- elementData(el, "initialized", true);
- if (bindingDef.initialize) {
- var result = bindingDef.initialize(el, el.offsetWidth,
- el.offsetHeight);
- elementData(el, "init_result", result);
- }
- }
- bindingDef.renderValue(el, data.x, elementData(el, "init_result"));
- evalAndRun(data.jsHooks.render, elementData(el, "init_result"), [el, data.x]);
- };
-
- // Only override resize if bindingDef implements it
- if (bindingDef.resize) {
- shinyBinding.resize = function(el, width, height) {
- // Shiny can call resize before initialize/renderValue have been
- // called, which doesn't make sense for widgets.
- if (elementData(el, "initialized")) {
- bindingDef.resize(el, width, height, elementData(el, "init_result"));
- }
- };
- }
-
- Shiny.outputBindings.register(shinyBinding, bindingDef.name);
- }
- };
-
- var scheduleStaticRenderTimerId = null;
- function scheduleStaticRender() {
- if (!scheduleStaticRenderTimerId) {
- scheduleStaticRenderTimerId = setTimeout(function() {
- scheduleStaticRenderTimerId = null;
- window.HTMLWidgets.staticRender();
- }, 1);
- }
- }
-
- // Render static widgets after the document finishes loading
- // Statically render all elements that are of this widget's class
- window.HTMLWidgets.staticRender = function() {
- var bindings = window.HTMLWidgets.widgets || [];
- forEach(bindings, function(binding) {
- var matches = binding.find(document.documentElement);
- forEach(matches, function(el) {
- var sizeObj = initSizing(el, binding);
-
- if (hasClass(el, "html-widget-static-bound"))
- return;
- el.className = el.className + " html-widget-static-bound";
-
- var initResult;
- if (binding.initialize) {
- initResult = binding.initialize(el,
- sizeObj ? sizeObj.getWidth() : el.offsetWidth,
- sizeObj ? sizeObj.getHeight() : el.offsetHeight
- );
- elementData(el, "init_result", initResult);
- }
-
- if (binding.resize) {
- var lastSize = {
- w: sizeObj ? sizeObj.getWidth() : el.offsetWidth,
- h: sizeObj ? sizeObj.getHeight() : el.offsetHeight
- };
- var resizeHandler = function(e) {
- var size = {
- w: sizeObj ? sizeObj.getWidth() : el.offsetWidth,
- h: sizeObj ? sizeObj.getHeight() : el.offsetHeight
- };
- if (size.w === 0 && size.h === 0)
- return;
- if (size.w === lastSize.w && size.h === lastSize.h)
- return;
- lastSize = size;
- binding.resize(el, size.w, size.h, initResult);
- };
-
- on(window, "resize", resizeHandler);
-
- // This is needed for cases where we're running in a Shiny
- // app, but the widget itself is not a Shiny output, but
- // rather a simple static widget. One example of this is
- // an rmarkdown document that has runtime:shiny and widget
- // that isn't in a render function. Shiny only knows to
- // call resize handlers for Shiny outputs, not for static
- // widgets, so we do it ourselves.
- if (window.jQuery) {
- window.jQuery(document).on(
- "shown.htmlwidgets shown.bs.tab.htmlwidgets shown.bs.collapse.htmlwidgets",
- resizeHandler
- );
- window.jQuery(document).on(
- "hidden.htmlwidgets hidden.bs.tab.htmlwidgets hidden.bs.collapse.htmlwidgets",
- resizeHandler
- );
- }
-
- // This is needed for the specific case of ioslides, which
- // flips slides between display:none and display:block.
- // Ideally we would not have to have ioslide-specific code
- // here, but rather have ioslides raise a generic event,
- // but the rmarkdown package just went to CRAN so the
- // window to getting that fixed may be long.
- if (window.addEventListener) {
- // It's OK to limit this to window.addEventListener
- // browsers because ioslides itself only supports
- // such browsers.
- on(document, "slideenter", resizeHandler);
- on(document, "slideleave", resizeHandler);
- }
- }
-
- var scriptData = document.querySelector("script[data-for='" + el.id + "'][type='application/json']");
- if (scriptData) {
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diff --git a/docs/articles/antaresH5_files/jquery-1.12.4/LICENSE.txt b/docs/articles/antaresH5_files/jquery-1.12.4/LICENSE.txt
deleted file mode 100644
index 5bf4f5e6..00000000
--- a/docs/articles/antaresH5_files/jquery-1.12.4/LICENSE.txt
+++ /dev/null
@@ -1,37 +0,0 @@
-Copyright 2005, 2014 jQuery Foundation and other contributors,
-https://jquery.org/
-
-This software consists of voluntary contributions made by many
-individuals. For exact contribution history, see the revision history
-available at https://github.com/jquery/jquery
-
-The following license applies to all parts of this software except as
-documented below:
-
-====
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
-
-====
-
-All files located in the node_modules and external directories are
-externally maintained libraries used by this software which have their
-own licenses; we recommend you read them, as their terms may differ from
-the terms above.
diff --git a/docs/articles/antaresH5_files/jquery-1.12.4/jquery.min.js b/docs/articles/antaresH5_files/jquery-1.12.4/jquery.min.js
deleted file mode 100644
index e8364758..00000000
--- a/docs/articles/antaresH5_files/jquery-1.12.4/jquery.min.js
+++ /dev/null
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This document describes a typical use of the antaresRead package.
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This package has been designed to read the results of an Antares simulation in an easy and convivial way. It can of course read any output files of a simulation at any desired time step, read synthetic results or detailed Monte Carlo scenarios but it can also add input time series to the results and perform some basic treatments like removing virtual areas.
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Installation
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The antaresRead package depends on the packages data.table, plyr and lubridate. If you have not already got them you can install them with the following command:
Then you can start using the package. The first function to use is setSimulationPath.
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This function needs to be called at least once during each R session. It stores important informations that are used by most of the functions of the package. While it has not been run, these functions will not work.
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Without any argument, setSimulationPath asks interactively to choose a directory containing an antares study. If the study contains multiple simulation results, it will also asks the user to choose one of them. This function stores the path to the output and reads some useful information about the simulation: type of output available, list of areas, links and clusters in the simulation, variables present in the output files, etc.
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setSimulationPath can also be used in a non-interactive way with one of these syntaxes:
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-# Specify full path
-setSimulationPath("study_path/output/simulation_name")
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-# Specify the name of the simulation
-setSimulationPath("study_path", simulation_name)
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-# Select a simulation by order
-setSimulationPath("study_path", 1)# first simulation
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-# Select a simulation by reverse order
-setSimulationPath("study_path", -1)# last simulation
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-# It is possible to store in a variable the result of the function
-opts<-setSimulationPath("study_path", 1)
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The function returns an object containing informations about the selected simulation. You can store this object in a variable for later use but this is not necessary because at any moment you can retrieve these informations.
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Reading time series
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Once setSimulationPath has been run, you can start reading data. Function readAntares is there for that !
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readAntares is the main function of the package. It is used to read every possible time series and it performs a few treatments on them to make your life easier. The result of the function will have the simplest structure possible: either a simple table or a list of tables if you asks data for differents elements (for instance links and areas)
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It has a huge number of parameters to control exactly what you get, but all of them are optional. Without any argument the function will still works and it will read the synthetic results for all the areas. But you can import other kind of output. here are some examples:
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-# Synthetic results for all links
-readAntares(links="all")
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-#Synthetic results for all clusters
-readAntares(clusters="all")
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-# Areas and links at the same time
-readAntares(areas="all", links="all")
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-# Select only a few columns.
-readAntares(select =c("OV. COST", "OP. COST", "LOAD"))
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You can also choose what elements to import and what level of details you want. For instance, the following command reads the first 10 Monte-Carlo scenarii data at monthly time step for the areas named “area1”, “area2” and “area3”.
Finally many arguments of readAntares can be used to add input time series to the object returned by the function. For instance, misc=TRUE will add columns containing miscelaneous productions for the imported areas.
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Manipulating data
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readAntares returns either a single table or a list of tables depending on the query of the user. More precisely the tables are data.table objects. It is then possible to use the powerful syntax offered by the package data.table.
For instance, areas[area == "08_fr", .(timeId, LOAD)] will return a table containing columns timeId and LOAD for the area names “08_fr”. In the select statement, it is also possible to calculate new columns. For instance, one can compute the net load like this:
readAntares can import almost everything but not everything because some data is not time series. Other functions exist to read this specific data: readBindingConstraints to read binding constraints, readClusterDesc to read cluster characteristics and readLayout to get the coordinates of the areas in the user interface of Antares.
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Some parameters in readAntares and other functions wait for vectors of area names or link names. On large projects with lots of areas. It may be painful to specify by hand a long list of areas or links. Hopefully, the functions getAreasand getLinks can be used to select or exclude areas using regular expressions. For instance, let us assume that the name of all areas located in France start with the characters“fr”, then the following command returns the list of all french areas: