Added link #138

README.md

@@ -46,7 +46,7 @@ This software should run on macOS, Linux and Windows typically without requiring
  - Experimental [ECAT support](https://github.com/rordenlab/dcm2niix/issues/95).
  - Updated cmake to make JPEG2000 support easier with improved Travis and AppVeyor support [Ningfei Li](https://github.com/ningfei).
  - Supports Data/Time for images that report Data/Time (0008,002A) but not separate Date and Time (0008,0022 and 0008,0032).
- - [BIDS reports morning times correctly](http://www.nitrc.org/forum/message.php?msg_id=20852).
+ - [BIDS reports SliceTiming correctly](http://www.nitrc.org/forum/message.php?msg_id=20852).
  - Options -1..-9 to control [gz compression level](https://github.com/rordenlab/dcm2niix/issues/90).
  - Includes some [PET details in the BIDS JSON sidecar](https://github.com/rordenlab/dcm2niix/issues/87).
  - Better detection of image order for Philips 4D DICOM (reported by Jason McMorrow and Stephen Wilson).
@@ -208,6 +208,7 @@ If you have any problems with the cmake build script described above or want to
   - [dcm2niir](https://github.com/muschellij2/dcm2niir) R wrapper for dcm2niix/dcm2nii.
   - [divest](https://github.com/jonclayden/divest) R interface to dcm2niix.
   - [sci-tran dcm2niix](https://github.com/scitran-apps/dcm2niix) docker.
-  - [neuro_docker](https://github.com/Neurita/neuro_docker) includes dcm2niix.
+  - [neuro_docker](https://github.com/Neurita/neuro_docker) includes dcm2niix as part of a provides a single, static Dockerfile.
+  - [neurodocker](https://github.com/kaczmarj/neurodocker) generates [custom](https://github.com/rordenlab/dcm2niix/issues/138) Dockerfiles given specific versions of neuroimaging software.
   - [dcm2niix_afni](https://afni.nimh.nih.gov/pub/dist/doc/program_help/dcm2niix_afni.html) is a version of dcm2niix included with the [AFNI](https://afni.nimh.nih.gov/) distribution.
   - [MRIcroGL](https://github.com/neurolabusc/MRIcroGL) is available for MacOS, Linux and Windows and provides a graphical interface for dcm2niix. You can get compiled copies from the [MRIcroGL NITRC web site](https://www.nitrc.org/projects/mricrogl/).

console/nii_dicom.cpp

@@ -1972,7 +1972,7 @@ unsigned char * nii_loadImgCore(char* imgname, struct nifti_1_header hdr, int bi
 	if (bitsAllocated == 12)
 	 conv12bit16bit(bImg, hdr);
     return bImg;
-} //nii_loadImg()
+} //nii_loadImgCore()
 
 unsigned char * nii_planar2rgb(unsigned char* bImg, struct nifti_1_header *hdr, int isPlanar) {
 	//DICOM data saved in triples RGBRGBRGB, NIfTI RGB saved in planes RRR..RGGG..GBBBB..B
@@ -2589,15 +2589,13 @@ unsigned char * nii_loadImgXL(char* imgname, struct nifti_1_header *hdr, struct
         if ((dcm.compressionScheme == kCompressYes) && (compressFlag != kCompressNone) )
             img = nii_loadImgCoreJasper(imgname, *hdr, dcm, compressFlag);
         else
-        #else
-        UNUSED(compressFlag); //avoid compiler -Wunused-parameter warning: compressFlag required when  myEnableJasper or not myDisableOpenJPEG
-        #endif
+       #endif
     #endif
-    if (dcm.compressionScheme == kCompressYes) {
+     if (dcm.compressionScheme == kCompressYes) {
         printMessage("Software not set up to decompress DICOM\n");
         return NULL;
     } else
-        img = nii_loadImgCore(imgname, *hdr, dcm.bitsAllocated);
+    	img = nii_loadImgCore(imgname, *hdr, dcm.bitsAllocated);
     if (img == NULL) return img;
     if ((dcm.compressionScheme == kCompressNone) && (dcm.isLittleEndian != littleEndianPlatform()) && (hdr->bitpix > 8))
         img = nii_byteswap(img, hdr);