NAMESPACE

# Generated by roxygen2: do not edit by hand

export(addClade)
export(addNdmtrx)
export(addTip)
export(blncdTree)
export(cTrees)
export(calcDstBLD)
export(calcDstMtrx)
export(calcDstRF)
export(calcDstTrp)
export(calcFrPrp)
export(calcNdBlnc)
export(calcNdsBlnc)
export(calcOvrlp)
export(calcPhyDv)
export(calcPrtFrPrp)
export(calc_mad)
export(calc_wrdfrq)
export(checkNdlst)
export(checkTreeMen)
export(clusters2_run)
export(clusters_run)
export(download_run)
export(drop_by_rank)
export(drop_clstrs)
export(drop_sqs)
export(fastCheckTreeMan)
export(getAge)
export(getBiprts)
export(getCnnctdNds)
export(getDcsd)
export(getLvng)
export(getNdAge)
export(getNdKids)
export(getNdLng)
export(getNdPD)
export(getNdPrdst)
export(getNdPrids)
export(getNdPtids)
export(getNdSlt)
export(getNdSstr)
export(getNdsAge)
export(getNdsFrmTxnyms)
export(getNdsKids)
export(getNdsLng)
export(getNdsPD)
export(getNdsPrdst)
export(getNdsPrids)
export(getNdsPtids)
export(getNdsSlt)
export(getNdsSstr)
export(getOtgrp)
export(getPath)
export(getPrnt)
export(getSpnAge)
export(getSpnsAge)
export(getSubtree)
export(getUnqNds)
export(get_clstr_slot)
export(get_nsqs)
export(get_ntaxa)
export(get_sq_slot)
export(get_stage_times)
export(get_tx_slot)
export(get_txids)
export(isUltrmtrc)
export(is_txid_in_clstr)
export(is_txid_in_sq)
export(list_clstrrec_slots)
export(list_ncbi_ranks)
export(list_seqrec_slots)
export(list_taxrec_slots)
export(loadTreeMan)
export(outfmt_get)
export(parameters)
export(parameters_reset)
export(pinTips)
export(plot_phylota_pa)
export(plot_phylota_treemap)
export(pstMnp)
export(randTree)
export(readTree)
export(readTrmn)
export(read_phylota)
export(reset)
export(restart)
export(rmClade)
export(rmNdmtrx)
export(rmNodes)
export(rmOtherSlt)
export(rmTips)
export(run)
export(saveTreeMan)
export(searchTxnyms)
export(setAge)
export(setNdID)
export(setNdOther)
export(setNdSpn)
export(setNdsID)
export(setNdsOther)
export(setNdsSpn)
export(setPD)
export(setTxnyms)
export(setup)
export(taxaResolve)
export(taxise_run)
export(twoer)
export(ultrTree)
export(unblncdTree)
export(updateSlts)
export(writeTree)
export(writeTrmn)
export(write_sqs)
exportClasses(ClstrArc)
exportClasses(ClstrRec)
exportClasses(Node)
exportClasses(Phylota)
exportClasses(SeqArc)
exportClasses(SeqRec)
exportClasses(TaxDict)
exportClasses(TaxRec)
exportClasses(TreeMan)
exportClasses(TreeMen)
exportClasses(multiPhylo)
exportClasses(phylo)
exportMethods("[")
exportMethods("[[")
exportMethods(as.character)
exportMethods(cTrees)
exportMethods(print)
exportMethods(show)
exportMethods(str)
exportMethods(summary)
import(methods)
importFrom(graphics,lines)
importFrom(graphics,plot.default)
importFrom(graphics,text)
importFrom(methods,getSlots)
importFrom(methods,initialize)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,show)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(stats,median)
importFrom(stats,runif)
importFrom(utils,capture.output)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,sessionInfo)
importFrom(utils,tail)
importFrom(utils,write.csv)
importFrom(utils,write.table)
useDynLib(phylotaR)
useDynLib(phylotaR,cFindPrids)
useDynLib(phylotaR,cGetNdPrids)
useDynLib(phylotaR,cGetNdPtids)
useDynLib(phylotaR,cGetNdmtrx)