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bcc.spt
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bcc.spt
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# Jmol state version 14.29.21 2018-09-09 13:50;
# fullName = "jmolApplet0__4953854421514787__";
# documentBase = "http://lampx.tugraz.at/~hadley/ss1/crystalstructure/structures/bcc/bcc_jsmol.php";
# codeBase = "http://lampx.tugraz.at/~hadley/ss1/crystalstructure/structures/bcc/../../../molecules/jsmol/j2s/";
function _setWindowState() {
# width 400;
# height 400;
stateVersion = 1429021;
background [xffffff];
axis1Color = "[xff0000]";
axis2Color = "[x008000]";
axis3Color = "[x0000ff]";
set ambientPercent 45;
set diffusePercent 84;
set specular true;
set specularPercent 22;
set specularPower 40;
set specularExponent 6;
set celShading false;
set celShadingPower 10;
set zShadePower 3;
}
function _setFileState() {
set allowEmbeddedScripts false;
set appendNew true;
set appletProxy "";
set applySymmetryToBonds false;
set autoBond true;
set bondRadiusMilliAngstroms 150;
set bondTolerance 0.45;
set defaultLattice {0 0 0};
set defaultLoadFilter "";
set defaultLoadScript "";
set defaultStructureDssp true;
set defaultVDW Auto;
set forceAutoBond false;
#set defaultDirectory "";
#set loadFormat "https://files.rcsb.org/download/%FILE.pdb";
#set loadLigandFormat "https://files.rcsb.org/ligands/download/%FILE.cif";
#set smilesUrlFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=true";
#set nihResolverFormat "https://cactus.nci.nih.gov/chemical/structure/%FILE";
#set pubChemFormat "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/%FILE/SDF?record_type=3d";
set bondingVersion 0;
set legacyAutoBonding false;
set legacyAutoBonding false;
set legacyHAddition false;
set legacyJavaFloat false;
set minBondDistance 0.4;
set minimizationCriterion 0.001;
set minimizationSteps 100;
set multipleBondBananas false;
set pdbAddHydrogens false;
set pdbGetHeader false;
set pdbSequential false;
set percentVdwAtom 23;
set smallMoleculeMaxAtoms 40000;
set smartAromatic true;
load /*file*/"http://lampx.tugraz.at/~hadley/ss1/crystalstructure/structures/bcc/bcc.cif" /*options*/ {555 555 -1} PACKED;
}
function _setParameterState() {
set defaultanglelabel "%VALUE %UNITS";
set defaultcolorscheme "jmol";
set defaultdistancelabel "%VALUE %UNITS";
set defaultdrawarrowscale 0.5;
set defaultlabelpdb "%m%r";
set defaultlabelxyz "%a";
set defaultlattice "{0 0 0}";
set defaultloadfilter "";
set defaultloadscript "";
set defaulttorsionlabel "%VALUE %UNITS";
set defaulttranslucent 0.5;
set defaultvdw "Auto";
set allowembeddedscripts true;
set allowmoveatoms false;
set allowrotateselected false;
set animationmode "once";
set appletproxy "";
set applysymmetrytobonds false;
set atomtypes "";
set autobond true;
set autofps false;
set axes unitcell;
set axesmode 2;
set axesoffset 0.0;
set axesscale 2.0;
set bondmodeor false;
set bondradiusmilliangstroms 150;
set bondtolerance 0.45;
set cartoonbaseedges false;
set cartoonblockheight 0.5;
set cartoonblocks false;
set cartoonfancy false;
set cartoonladders false;
set cartoonrockets false;
set cartoonsteps false;
set chaincasesensitive false;
set dataseparator "~~~";
set defaultstructuredssp true;
set delaymaximumms 0;
set dipolescale 1.0;
set disablepopupmenu false;
set displaycellparameters true;
set dotdensity 3;
set dotscale 1;
set dotsselectedonly false;
set dotsurface true;
set dragselected false;
set drawfontsize 14.0;
set drawhover false;
set dsspcalculatehydrogenalways true;
set ellipsoidarcs false;
set ellipsoidarrows false;
set ellipsoidaxes false;
set ellipsoidaxisdiameter 0.02;
set ellipsoidball true;
set ellipsoiddotcount 200;
set ellipsoiddots false;
set ellipsoidfill false;
set energyunits "kJ";
set forceautobond false;
set gestureswipefactor 1.0;
set greyscalerendering false;
set hbondsbackbone false;
set hbondsrasmol true;
set hbondssolid false;
set helixstep 1;
set helppath "https://chemapps.stolaf.edu/jmol/docs/index.htm";
set hermitelevel 0;
set hiddenlinesdashed false;
set hidenameinpopup false;
set hidenavigationpoint false;
set highresolution false;
set hoverdelay 0.5;
set infofontsize 20;
set isosurfacekey false;
set isosurfacepropertysmoothing true;
set isosurfacepropertysmoothingpower 7;
set jmolinjspecview true;
set justifymeasurements false;
set loadatomdatatolerance 0.01;
set measureallmodels false;
set measurementlabels true;
set meshscale 1;
set messagestylechime false;
set minbonddistance 0.4;
set minimizationcriterion 0.001;
set minimizationrefresh true;
set minimizationsilent false;
set minimizationsteps 100;
set minpixelselradius 6;
set modulationscale 1.0;
set monitorenergy false;
set multiplebondbananas false;
set multiplebondradiusfactor 0.0;
set multiplebondspacing -1.0;
set navigationperiodic false;
set navigationspeed 5.0;
set nbocharges true;
set nmrpredictformat "http://www.nmrdb.org/service/predictor?POST?molfile=";
set nmrurlformat "http://www.nmrdb.org/new_predictor?POST?molfile=";
set partialdots false;
set particleradius 20.0;
set pdbaddhydrogens false;
set pdbgetheader false;
set pdbsequential false;
set percentvdwatom 23;
set pickingspinrate 10;
set pointgroupdistancetolerance 0.2;
set pointgrouplineartolerance 8.0;
set propertyatomnumbercolumncount 0;
set propertyatomnumberfield 0;
set propertycolorscheme "roygb";
set propertydatacolumncount 0;
set propertydatafield 0;
set quaternionframe "p";
set rangeselected false;
set ribbonaspectratio 16;
set ribbonborder false;
set rocketbarrels false;
set selecthetero true;
set selecthydrogen true;
set sheetsmoothing 1.0;
set showhiddenselectionhalos false;
set showhydrogens true;
set showmeasurements true;
set showmodulationvectors false;
set showmultiplebonds true;
set shownavigationpointalways false;
set showunitcelldetails true;
set slabbyatom false;
set slabbymolecule false;
set smallmoleculemaxatoms 40000;
set smartaromatic true;
set solventprobe false;
set solventproberadius 1.2;
set ssbondsbackbone false;
set starwidth 0.05;
set stereodegrees -5;
set strandcountformeshribbon 7;
set strandcountforstrands 5;
set strutdefaultradius 0.3;
set strutlengthmaximum 7.0;
set strutsmultiple false;
set strutspacing 6;
set tracealpha true;
set translucent true;
set twistedsheets false;
set usenumberlocalization true;
set vectorscale 1.0;
set vectorscentered false;
set vectorsymmetry false;
set vectortrail 0;
set vibrationscale 1.0;
set waitformoveto true;
set wireframerotation false;
set zdepth 0;
set zoomheight false;
set zoomlarge true;
set zslab 50;
}
function _setModelState() {
unitcell on;
font unitcell 14 SansSerif Plain;
unitcell on;
font unitcell 14 SansSerif Plain;
axes on;
font axes 14 SansSerif Plain;
axes scale 2.0;
frank on;
font frank 16 SansSerif Plain;
select *;
unitcell on;
font unitcell 14 SansSerif Plain;
unitcell on;
font unitcell 14 SansSerif Plain;
select *;
set fontScaling false;
}
function _setPerspectiveState() {
set perspectiveModel 11;
set scaleAngstromsPerInch 0;
set perspectiveDepth false;
set visualRange 5;
set cameraDepth 3;
boundbox corners {0 0 0} {4.290600401556367 4.2906002007781705 4.2906} # volume = 78.98673210194245;
center {2.1453002007781836 2.1453001003890853 2.1453};
moveto -1.0 {0 0 1 0} 100.0 0.0 0.0 {2.1453002007781836 2.1453001003890853 2.1453} 5.985768771356518 {0 0 0} 0 0 0 3.0 0.0 0.0;
save orientation "default";
moveto 0.0 { 577 577 577 33.0} 100.0 0.0 0.0 {2.1453002007781836 2.1453001003890853 2.1453} 5.985768771356518 {0 0 0} 0 0 0 3.0 0.0 0.0;;
slab 100;depth 0;
set slabRange 0.0;
set spinX 0; set spinY 30; set spinZ 0; set spinFps 30; set navX 0; set navY 0; set navZ 0; set navFps 10;
}
function _setSelectionState() {
select ({0:8});
set hideNotSelected false;
}
function _setState() {
initialize;
set refreshing false;
_setWindowState;
_setFileState;
_setParameterState;
_setModelState;
_setPerspectiveState;
_setSelectionState;
set refreshing true;
set antialiasDisplay false;
set antialiasTranslucent true;
set antialiasImages true;
}
_setState;