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Jenkinsfile
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#!/usr/bin/env groovy
@Library('StanUtils')
import org.stan.Utils
def runTests(String testPath, boolean jumbo = false) {
try {
if (jumbo) {
sh "./runTests.py -j${env.PARALLEL} ${testPath} --jumbo"
} else {
sh "./runTests.py -j${env.PARALLEL} ${testPath}"
}
}
finally { junit 'test/**/*.xml' }
}
def runTestsWin(String testPath, boolean buildLibs = true, boolean jumbo = false) {
withEnv(['PATH+TBB=./lib/tbb']) {
bat "echo $PATH"
if (buildLibs){
bat "mingw32-make.exe -f make/standalone math-libs"
}
try {
if (jumbo) {
bat "runTests.py -j${env.PARALLEL} ${testPath} --jumbo"
} else {
bat "runTests.py -j${env.PARALLEL} ${testPath}"
}
}
finally { junit 'test/**/*.xml' }
}
}
def deleteDirWin() {
bat "attrib -r -s /s /d"
deleteDir()
}
def skipRemainingStages = false
def skipOpenCL = false
def utils = new org.stan.Utils()
def isBranch(String b) { env.BRANCH_NAME == b }
String alsoNotify() {
if (isBranch('master') || isBranch('develop')) {
} else ""
}
Boolean isPR() { env.CHANGE_URL != null }
String fork() { env.CHANGE_FORK ?: "stan-dev" }
String branchName() { isPR() ? env.CHANGE_BRANCH :env.BRANCH_NAME }
String cmdstan_pr() { params.cmdstan_pr ?: ( env.CHANGE_TARGET == "master" ? "downstream_hotfix" : "downstream_tests" ) }
String stan_pr() { params.stan_pr ?: ( env.CHANGE_TARGET == "master" ? "downstream_hotfix" : "downstream_tests" ) }
pipeline {
agent none
parameters {
string(defaultValue: '', name: 'cmdstan_pr', description: 'PR to test CmdStan upstream against e.g. PR-630')
string(defaultValue: '', name: 'stan_pr', description: 'PR to test Stan upstream against e.g. PR-630')
booleanParam(defaultValue: false, name: 'withRowVector', description: 'Run additional distribution tests on RowVectors (takes 5x as long)')
booleanParam(defaultValue: false, name: 'run_win_tests', description: 'Run full unit tests on Windows.')
}
options {
skipDefaultCheckout()
preserveStashes(buildCount: 7)
}
environment {
STAN_NUM_THREADS = '4'
}
stages {
stage('Kill previous builds') {
when {
not { branch 'develop' }
not { branch 'master' }
}
steps {
script {
utils.killOldBuilds()
}
}
}
stage("Clang-format") {
agent any
steps {
sh "printenv"
deleteDir()
retry(3) { checkout scm }
withCredentials([usernamePassword(credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b',
usernameVariable: 'GIT_USERNAME', passwordVariable: 'GIT_PASSWORD')]) {
sh """#!/bin/bash
set -x
git checkout -b ${branchName()}
clang-format --version
find stan test -name '*.hpp' -o -name '*.cpp' | xargs -n20 -P${env.PARALLEL} clang-format -i
if [[ `git diff` != "" ]]; then
git config --global user.email "[email protected]"
git config --global user.name "Stan Jenkins"
git add stan test
git commit -m "[Jenkins] auto-formatting by `clang-format --version`"
git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/${fork()}/math.git ${branchName()}
echo "Exiting build because clang-format found changes."
echo "Those changes are now found on stan-dev/math under branch ${branchName()}"
echo "Please 'git pull' before continuing to develop."
exit 1
fi"""
}
}
post {
always { deleteDir() }
failure {
script {
emailext (
subject: "[StanJenkins] Autoformattted: Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]'",
body: "Job '${env.JOB_NAME} [${env.BUILD_NUMBER}]' " +
"has been autoformatted and the changes committed " +
"to your branch, if permissions allowed." +
"Please pull these changes before continuing." +
"\n\n" +
"See https://github.com/stan-dev/stan/wiki/Coding-Style-and-Idioms" +
" for setting up the autoformatter locally.\n"+
"(Check console output at ${env.BUILD_URL})",
recipientProviders: [[$class: 'RequesterRecipientProvider']],
to: "${env.CHANGE_AUTHOR_EMAIL}"
)
}
}
}
}
stage('Linting & Doc checks') {
agent any
steps {
script {
deleteDir()
retry(3) { checkout scm }
sh "git clean -xffd"
stash 'MathSetup'
sh "echo CXX=${env.CXX} -Werror > make/local"
sh "echo BOOST_PARALLEL_JOBS=${env.PARALLEL} >> make/local"
parallel(
CppLint: { sh "make cpplint" },
Dependencies: { sh """#!/bin/bash
set -o pipefail
make test-math-dependencies 2>&1 | tee dependencies.log""" } ,
Documentation: { sh "make doxygen" },
)
}
}
post {
always {
recordIssues enabledForFailure: true, tools:
[cppLint(),
groovyScript(parserId: 'mathDependencies', pattern: '**/dependencies.log')]
deleteDir()
}
}
}
stage('Verify changes') {
agent { label 'linux' }
steps {
script {
retry(3) { checkout scm }
sh 'git clean -xffd'
def paths = ['stan', 'make', 'lib', 'test', 'runTests.py', 'runChecks.py', 'makefile', 'Jenkinsfile', '.clang-format'].join(" ")
skipRemainingStages = utils.verifyChanges(paths)
def openCLPaths = ['stan/math/opencl', 'test/unit/math/opencl'].join(" ")
skipOpenCL = utils.verifyChanges(openCLPaths)
}
}
}
stage('Headers check') {
when {
expression {
!skipRemainingStages
}
}
agent any
steps {
deleteDir()
unstash 'MathSetup'
sh "echo CXX=${env.CXX} -Werror > make/local"
sh "make -j${env.PARALLEL} test-headers"
}
post { always { deleteDir() } }
}
stage('Full Unit Tests') {
agent any
when {
expression {
!skipRemainingStages
}
}
steps {
deleteDir()
unstash 'MathSetup'
sh "echo CXXFLAGS += -fsanitize=address > make/local"
script {
if (isUnix()) {
runTests("test/unit", true)
} else {
runTestsWin("test/unit", true)
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Always-run tests') {
when {
expression {
!skipRemainingStages
}
}
failFast true
parallel {
stage('MPI tests') {
agent { label 'linux && mpi' }
steps {
deleteDir()
unstash 'MathSetup'
sh "echo CXX=${MPICXX} >> make/local"
sh "echo CXX_TYPE=gcc >> make/local"
sh "echo STAN_MPI=true >> make/local"
runTests("test/unit/math/prim/functor")
runTests("test/unit/math/rev/functor")
}
post { always { retry(3) { deleteDir() } } }
}
stage('OpenCL CPU tests') {
when {
expression {
!skipOpenCL
}
}
agent { label "linux-gpu" }
steps {
script {
if (isUnix()) {
deleteDir()
unstash 'MathSetup'
sh "echo CXX=${env.CXX} -Werror > make/local"
sh "echo STAN_OPENCL=true>> make/local"
sh "echo OPENCL_PLATFORM_ID=${env.OPENCL_PLATFORM_ID_CPU}>> make/local"
sh "echo OPENCL_DEVICE_ID=${env.OPENCL_DEVICE_ID_CPU}>> make/local"
// skips tests that require specific support in OpenCL
sh 'echo "ifdef NO_CPU_OPENCL_INT64_BASE_ATOMIC" >> make/local'
sh 'echo "CXXFLAGS += -DSTAN_TEST_SKIP_REQUIRING_OPENCL_INT64_BASE_ATOMIC" >> make/local'
sh 'echo "endif" >> make/local'
runTests("test/unit/math/opencl", false)
runTests("test/unit/multiple_translation_units_test.cpp")
} else {
deleteDirWin()
unstash 'MathSetup'
bat "echo CXX=${env.CXX} -Werror > make/local"
bat "echo STAN_OPENCL=true >> make/local"
bat "echo OPENCL_PLATFORM_ID=${env.OPENCL_PLATFORM_ID_CPU} >> make/local"
bat "echo OPENCL_DEVICE_ID=${env.OPENCL_DEVICE_ID_CPU} >> make/local"
bat 'echo LDFLAGS_OPENCL= -L"C:\\Program Files (x86)\\IntelSWTools\\system_studio_2020\\OpenCL\\sdk\\lib\\x64" -lOpenCL >> make/local'
bat "mingw32-make.exe -f make/standalone math-libs"
runTestsWin("test/unit/math/opencl", false, false)
runTestsWin("test/unit/multiple_translation_units_test.cpp", false, false)
}
}
}
}
stage('OpenCL GPU tests') {
agent { label "linux-gpu" }
steps {
script {
if (isUnix()) {
deleteDir()
unstash 'MathSetup'
sh "echo CXX=${env.CXX} -Werror > make/local"
sh "echo STAN_OPENCL=true>> make/local"
sh "echo OPENCL_PLATFORM_ID=${env.OPENCL_PLATFORM_ID_GPU} >> make/local"
sh "echo OPENCL_DEVICE_ID=${env.OPENCL_DEVICE_ID_GPU} >> make/local"
runTests("test/unit/math/opencl", false)
runTests("test/unit/multiple_translation_units_test.cpp")
} else {
deleteDirWin()
unstash 'MathSetup'
bat "echo CXX=${env.CXX} -Werror > make/local"
bat "echo STAN_OPENCL=true >> make/local"
bat "echo OPENCL_PLATFORM_ID=${env.OPENCL_PLATFORM_ID_GPU} >> make/local"
bat "echo OPENCL_DEVICE_ID=${env.OPENCL_DEVICE_ID_GPU} >> make/local"
bat 'echo LDFLAGS_OPENCL= -L"C:\\Program Files (x86)\\IntelSWTools\\system_studio_2020\\OpenCL\\sdk\\lib\\x64" -lOpenCL >> make/local'
bat "mingw32-make.exe -f make/standalone math-libs"
runTestsWin("test/unit/math/opencl", false, false)
runTestsWin("test/unit/multiple_translation_units_test.cpp", false, false)
}
}
}
}
stage('Distribution tests') {
agent { label "distribution-tests" }
steps {
deleteDir()
unstash 'MathSetup'
sh """
echo CXX=${env.CXX} > make/local
echo O=0 >> make/local
echo N_TESTS=${env.N_TESTS} >> make/local
"""
script {
if (params.withRowVector || isBranch('develop') || isBranch('master')) {
sh "echo CXXFLAGS+=-DSTAN_TEST_ROW_VECTORS >> make/local"
sh "echo CXXFLAGS+=-DSTAN_PROB_TEST_ALL >> make/local"
}
}
sh "./runTests.py -j${env.PARALLEL} test/prob > dist.log 2>&1"
}
post {
always {
script { zip zipFile: "dist.log.zip", archive: true, glob: 'dist.log' }
retry(3) { deleteDir() }
}
failure {
echo "Distribution tests failed. Check out dist.log.zip artifact for test logs."
}
}
}
stage('Expressions test') {
agent any
steps {
unstash 'MathSetup'
script {
sh "echo O=0 > make/local"
sh "python ./test/code_generator_test.py"
sh "python ./test/signature_parser_test.py"
sh "python ./test/statement_types_test.py"
sh "python ./test/varmat_compatibility_summary_test.py"
sh "python ./test/varmat_compatibility_test.py"
withEnv(['PATH+TBB=./lib/tbb']) {
sh "python ./test/expressions/test_expression_testing_framework.py"
}
withEnv(['PATH+TBB=./lib/tbb']) {
try { sh "./runTests.py -j${env.PARALLEL} test/expressions" }
finally { junit 'test/**/*.xml' }
}
sh "make clean-all"
sh "echo STAN_THREADS=true >> make/local"
withEnv(['PATH+TBB=./lib/tbb']) {
try {
sh "./runTests.py -j${env.PARALLEL} test/expressions --only-functions reduce_sum map_rect"
}
finally { junit 'test/**/*.xml' }
}
}
}
post { always { deleteDir() } }
}
stage('Threading tests') {
agent any
steps {
script {
deleteDir()
unstash 'MathSetup'
sh "echo CXX=${env.CXX} -Werror > make/local"
sh "echo STAN_THREADS=true >> make/local"
sh "export STAN_NUM_THREADS=4"
if (isBranch('develop') || isBranch('master')) {
runTests("test/unit")
sh "find . -name *_test.xml | xargs rm"
} else {
runTests("test/unit -f thread")
sh "find . -name *_test.xml | xargs rm"
runTests("test/unit -f map_rect")
sh "find . -name *_test.xml | xargs rm"
runTests("test/unit -f reduce_sum")
}
}
}
post { always { retry(3) { deleteDir() } } }
}
stage('Windows Headers & Unit') {
when {
allOf {
anyOf {
branch 'develop'
branch 'master'
expression { params.run_win_tests }
}
expression {
!skipRemainingStages
}
}
}
agent { label 'windows' }
steps {
deleteDirWin()
unstash 'MathSetup'
bat "mingw32-make.exe -f make/standalone math-libs"
runTestsWin("test/unit", false, false)
}
}
}
}
stage('Upstream tests') {
when {
allOf {
expression {
env.BRANCH_NAME ==~ /PR-\d+/
}
expression {
!skipRemainingStages
}
}
}
steps {
build(job: "Stan/${stan_pr()}",
parameters: [string(name: 'math_pr', value: env.BRANCH_NAME),
string(name: 'cmdstan_pr', value: cmdstan_pr())])
}
}
stage('Upload doxygen') {
agent any
when { branch 'develop'}
steps {
deleteDir()
retry(3) { checkout scm }
withCredentials([usernamePassword(credentialsId: 'a630aebc-6861-4e69-b497-fd7f496ec46b',
usernameVariable: 'GIT_USERNAME', passwordVariable: 'GIT_PASSWORD')]) {
sh """#!/bin/bash
set -x
make doxygen
git config --global user.email "[email protected]"
git config --global user.name "Stan Jenkins"
git checkout --detach
git branch -D gh-pages
git push https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/stan-dev/math.git :gh-pages
git checkout --orphan gh-pages
git add -f doc
git commit -m "auto generated docs from Jenkins"
git subtree push --prefix doc/api/html https://${GIT_USERNAME}:${GIT_PASSWORD}@github.com/stan-dev/math.git gh-pages
"""
}
}
post { always { deleteDir() } }
}
}
post {
always {
node("osx || linux") {
recordIssues enabledForFailure: false, tool: clang()
}
}
success {
script {
utils.updateUpstream(env, 'stan')
utils.mailBuildResults("SUCCESSFUL")
}
}
unstable { script { utils.mailBuildResults("UNSTABLE", alsoNotify()) } }
failure { script { utils.mailBuildResults("FAILURE", alsoNotify()) } }
}
}