Identify useful data sets

[jayhesselberth]

• Probably don't want to bundle AVID-seq data until it's published.
• LIBRA-seq?
• Other large TCR or BCR sequencing data sets?

[scotterdooo]

LIBRA-seq HIV patient data, thought it sounds like it's not in 10x post processing format: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140795

PeyersPatch BCR data, only 4 samples but in 10x format it appears: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE140795

[jayhesselberth]

@scotterdooo you added the same link twice above. How did you find the HIV patient data? the LIBRA-seq paper?

[sheridar]

Thymic development TCR: https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-8581/samples/?s_page=1&s_pagesize=500

COVID19 TCR/BCR: https://www.nature.com/articles/s41590-020-0762-x#data-availability
May be hard to get data, deposited in genome sequence archive in China and listed as controlled access

[sheridar]

A large scRNA-seq/VDJ COVID19 study:
https://www.sciencedirect.com/science/article/pii/S0092867420314446?via%3Dihub