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MiniProject.log
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MiniProject.log
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The HCMV genome (EF999921) has 168 CDS.
target_id test_stat pval qval
ABV71604.1 14.8058659650702 0.00011916425752903 0.0117093874509415
ABV71622.1 14.4990239189249 0.000140232185041215 0.0117093874509415
ABV71560.1 13.0094816725969 0.000309917714761954 0.0154311721281172
ABV71652.1 12.6798920254212 0.000369608913248317 0.0154311721281172
ABV71626.1 11.8133192080409 0.000588084976348824 0.0172288449257209
ABV71651.1 11.4692650788867 0.000707566560377686 0.0172288449257209
ABV71646.1 11.4313109302001 0.000722167152575129 0.0172288449257209
ABV71649.1 11.1497503696889 0.000840429817625281 0.0175439724429277
ABV71561.1 10.4406483478309 0.00123271991543349 0.0228738028752658
ABV71595.1 10.0085965855237 0.00155811209268184 0.0260204719477868
ABV71519.1 8.64355100028667 0.00328221074140175 0.044087795400239
ABV71596.1 8.57115115091909 0.00341531152576526 0.044087795400239
ABV71506.1 8.40172409152244 0.00374865309601806 0.044087795400239
ABV71607.1 8.35147586474251 0.00385374178693765 0.044087795400239
ABV71635.1 8.30207462511175 0.00395998162277596 0.044087795400239
ABV71507.1 7.96945435755214 0.00475732769049312 0.0496546077695219
Donor 1 (2dpi) had 2259287.0 read pairs before Bowtie2 filtering and 1744101.0 read pairs after
Donor 1 (6dpi) had 2004530.0 read pairs before Bowtie2 filtering and 1488833.0 read pairs after
Donor 3 (2dpi) had 2730258.0 read pairs before Bowtie2 filtering and 2382996.0 read pairs after
Donor 3 (6dpi) had 2476889.0 read pairs before Bowtie2 filtering and 1500834.0 read pairs after
spades -k 55,77,99,127 --only-assembler -t 2 --pe1-1 EF999921_SRR5660030.1.fastq --pe1-2 EF999921_SRR5660030.2.fastq --pe2-1 EF999921_SRR5660033.1.fastq --pe2-2 EF999921_SRR5660033.2.fastq --pe3-1 EF999921_SRR5660044.1.fastq --pe3-2 EF999921_SRR5660044.2.fastq --pe4-1 EF999921_SRR5660045.1.fastq --pe4-2 EF999921_SRR5660045.2.fastq -o Spades/
There are 54 contigs > 1000 bp in the assembly.
There are 195620 bp in the assembly.
sacc pident length qstart qend sstart send bitscore eva stitle
EF999921.1 100.000 15888 1 15888 171116 155229 29340 0.0 EF999921.1 Human herpesvirus 5 strain TB40/E clone TB40-BAC4
JX512204.1 100.000 15888 1 15888 138487 122600 29340 0.0 JX512204.1 Human herpesvirus 5 strain HAN16
MT070140.1 100.000 15888 1 15888 138846 122959 29340 0.0 MT070140.1 UNVERIFIED: Human betaherpesvirus 5 isolate P10
KF297339.1 100.000 15888 1 15888 139075 123188 29340 0.0 KF297339.1 Human herpesvirus 5 strain TB40/E clone Lisa
MT044484.1 99.987 15888 1 15888 138427 122540 29329 0.0 MT044484.1 Human betaherpesvirus 5 strain HAN-SOT4
KX544839.1 99.962 15888 1 15888 171071 155187 29303 0.0 KX544839.1 Human herpesvirus 5 isolate TB40-E_UNC
MT044481.1 99.899 15888 1 15888 138675 122788 29252 0.0 MT044481.1 Human betaherpesvirus 5 strain GLA-SOT2
KP745712.1 99.654 15888 1 15888 138401 122517 29032 0.0 KP745712.1 Human herpesvirus 5 strain BE/19/2010
KR534196.1 99.591 15888 1 15888 138406 122519 28980 0.0 KR534196.1 Human herpesvirus 5 strain JER847