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[hoelzer]

What do you think @huguesrichard and @matthuska about this general structure for the workshop template repo?

I was thinking how we could improve the handling of different example data sets. For example, for the Kenya workshop we used Salmonella Hybrid data. But the NGS Summer school will use some other bacteria that will be sequenced the day before the workshop.

Of course, we could ignore that and then every time the workshop needs to be adjusted in all files when other example data is used. But probably that is ok bc its hard to come up with a general template I think.