From a4f5d09151b6ac5faf367b82136284cc8d2108c6 Mon Sep 17 00:00:00 2001
From: Thomas Krannich <Krannich479@users.noreply.github.com>
Date: Wed, 29 May 2024 13:16:12 +0200
Subject: [PATCH] Update VariantCalling.yml

add running --help for principal check after download
---
 .github/workflows/VariantCalling.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/VariantCalling.yml b/.github/workflows/VariantCalling.yml
index efbce40..ad729c4 100644
--- a/.github/workflows/VariantCalling.yml
+++ b/.github/workflows/VariantCalling.yml
@@ -41,6 +41,8 @@ jobs:
         run: |
             git clone https://github.com/rki-mf1/cievad.git
             pushd cievad
+            nextflow run hap.nf --help
+            nextflow run eval.nf --help
             wget https://www.ebi.ac.uk/ena/browser/api/fasta/MN908947.3
             sed 's/>ENA|MN908947|MN908947.3 Severe acute respiratory syndrome coronavirus 2 isolate Wuhan-Hu-1, complete genome./>MN908947.3/g' MN908947.3 > MN908947.3.fasta
             popd