Go to pollev.com/martinholzer210 on your browser or phone and wait until the poll is active.
- This GitHub repository will guide you through the whole workshop
- That means, that we will also jump a bit around between this repository, slide decks, the terminal, demo examples, and hands-on sessions
- You will find example commands in this workshop repository
- keep in mind that these are examples! You should always familiarize yourself with a bioinformatics tool (read the publication, the GitHub README, ...)
- we will mostly use default parameter settings if not otherwise stated, which might be not optimal for your own data!
- remember that
--helpand google (and ChatGPT) are your friends!
- Please raise your hand to ask a question at any time
- There will be always "lecture" parts followed by practical hands-on
- We continue to work with the laptops you already used in the Illumina part
- In the future, you might also use the HPC (High-performance Cluster) at RKI, which we can also give a try during the course
- Details about HPC usage can be found in the intranet (Confluence)