DESCRIPTION

Package: RTIGER
Type: Package
Title: HMM-Based Model for Genotyping and Cross-Over Identification
Version: 2.1.0
Authors@R: c(
    person("Rafael", "Campos-Martin", email = "rfael.mpi@gmail.com", role = c("cre"), comment = c(ORCID = "0000-0002-1395-8571")),
    person("Sophia", "Schmickler", email = "so4a_schmickler@t-online.de", role = c("aut")),
    person("Manish", "Goel", email = "goel@mpipz.mpg.de", role = c("ctb")),
    person("Korbinian", "Schneeberger", email = "schneeberger@mpipz.mpg.de", role = c("aut")),
    person("Achim", "Tresch", email = "achim.tresch@uni-koeln.de", role= c("aut"))
    )
Description: Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>. 
Depends: 
    R (>= 3.6),
    GenomicRanges, 
    GenomeInfoDb
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
LazyDataCompression: gzip
Imports: methods, e1071, extraDistr, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Suggests: 
    knitr,
    rmarkdown,
    markdown,
    Gviz, 
    rtracklayer 
biocViews: GenomeAnnotation, HiddenMarkovModel, Sequencing