notebooks.yml

name: Test Notebooks
on: [push]

jobs:
  build:
    name: Test and Inspect
    runs-on: windows-latest
    strategy:
      fail-fast: false
    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0  # Shallow clones should be disabled for a better relevancy of analysis

      - name: set up Python 3.8
        uses: actions/setup-python@v4
        id: setPy
        with:
          python-version: "3.8"

      - name: put ~/.local/bin on $PATH
        run: echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV

      - name: install tools and dependencies
        run: |
          python3 -m pip install --upgrade setuptools==59.8.0 pip wheel
          pip3 install --user --upgrade numpy
          python3 -m pip install scikit-build
          pip3 install --user -r tvb_framework/requirements.txt
          pip3 install --user --no-build-isolation tvb-gdist
          python3 -m pip install elasticsearch
          python3 -m pip install nbformat nbconvert
          pip3 install ipympl seaborn
          pip3 install --upgrade pip ipython ipykernel
          ipython kernel install --name "python3" --user

      - name: setup tvb
        shell: pwsh
        run: |
          cd tvb_build
          cmd /k "install_full_tvb.bat"

      - name: cache data
        id: cache-data
        uses: actions/cache@v3
        with:
          path: tvb_data
          key: tvbdata

      - name: download data
        if: steps.cache-data.outputs.cache-hit != 'true'
        shell: pwsh
        run: |
          Invoke-WebRequest -OutFile C:\\TEMP\\tvb_data.zip -Uri "https://zenodo.org/record/10128131/files/tvb_data.zip?download=1"
          Expand-Archive 'C:\\TEMP\\tvb_data.zip' C:\\tvb_data
          del C:\\TEMP\\tvb_data.zip
          cd C:\\tvb_data
          python setup.py develop

      - name: run notebooks
        env:
          HBP_AUTH_TOKEN: ${{ secrets.HBP_AUTH_TOKEN }}   # token or (secret+id) are needed for siibra tests
        run: |
          python ./tvb_build/notebook_runner.py ./tvb_documentation/demos siibra