build.yml

name: Test Py
on: [push]

jobs:
  build:
    name: Test and Inspect
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: [ "3.8", "3.9", "3.10" ]

    steps:
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0  # Shallow clones should be disabled for a better relevancy of analysis

      - name: set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        id: setPy
        with:
          python-version: ${{ matrix.python-version }}

      - name: put ~/.local/bin on $PATH
        run: echo "PATH=$HOME/.local/bin:$PATH" >> $GITHUB_ENV

#      - name: cache ~/.local for pip deps
#        id: cache-local
#        uses: actions/cache@v3
#        with:
#          path: ~/.local
#          key: pip--${{ steps.setPy.outputs.version }}-${{ hashFiles('tvb_framework/requirements.txt') }}

      - name: install tools and dependencies
#        if: steps.cache-local.outputs.cache-hit != 'true'
        run: |
          sudo apt-get update
          sudo apt install libbz2-dev libhdf5-serial-dev liblzo2-dev
          python3 -m pip install --upgrade setuptools==59.8.0 pip wheel
          pip3 install --user --upgrade numpy
          python3 -m pip install scikit-build
          pip3 install --user -r tvb_framework/requirements.txt
          pip3 install --user --no-build-isolation tvb-gdist

      - name: setup tvb
        run: |
          cd tvb_build
          bash install_full_tvb.sh

      - name: cache data
        id: cache-data
        uses: actions/cache@v3
        with:
          path: tvb_data
          key: tvb-data

      - name: download data
        if: steps.cache-data.outputs.cache-hit != 'true'
        run: |
          wget -q https://zenodo.org/record/10128131/files/tvb_data.zip?download=1 -O tvb_data.zip
          mkdir tvb_data
          unzip tvb_data.zip -d tvb_data
          rm tvb_data.zip

      - name: setup data
        run: |
          cd tvb_data
          python3 setup.py develop

      - name: run library tests
        run: pytest -v tvb_library --cov --cov-report=xml && mv coverage.xml coverage-library.xml

      - name: run framework tests
        env:
          HBP_AUTH_TOKEN: ${{ secrets.HBP_AUTH_TOKEN }}   # token or (secret+id) are needed for siibra tests
          KEYCLOAK_CLIENT_ID: ${{ secrets.KEYCLOAK_CLIENT_ID }} # KEYCLOAK_CLIENT_ID & SECRET have priority in tests
          KEYCLOAK_CLIENT_SECRET: ${{ secrets.KEYCLOAK_CLIENT_SECRET }}
        run: pytest -v tvb_framework  --cov --cov-report=xml --ignore=tvb_framework/tvb/interfaces/rest/client/tests/rest_test.py && mv coverage.xml coverage-framework.xml

      - name: run storage tests
        run: pytest -v tvb_storage  --cov --cov-report=xml && mv coverage.xml coverage-storage.xml

      - name: Prepare PATH for Sonar
        run: |
          echo "PATH=$PATH:/opt/sonar-scanner/bin:/opt/nodejs/bin" >> $GITHUB_ENV

      - name: SonarCloud Scan
        uses: SonarSource/sonarcloud-github-action@master
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}  # Needed to get PR information, if any
          SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}