DESCRIPTION

Package: methylGSA
Type: Package
Title: Gene Set Analysis Using the Outcome of Differential Methylation
Version: 1.9.1
Authors@R: c(
    person("Xu", "Ren", 
        email = "xuren2120@gmail.com", role = c("aut", "cre")),
    person("Pei Fen", "Kuan", 
        email = "peifen.kuan@stonybrook.edu", role = "aut"))
Description: The main functions for methylGSA are methylglm and methylRRA.
    methylGSA implements logistic regression adjusting number of probes as 
    a covariate.
    methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation.
    For more detailed help information, please see the vignette.
Encoding: UTF-8
Imports:
    RobustRankAggreg,
    ggplot2,
    stringr,
    stats,
    clusterProfiler,
    missMethyl,
    org.Hs.eg.db,
    reactome.db,
    BiocParallel,
    GO.db,
    AnnotationDbi,
    shiny,
    IlluminaHumanMethylation450kanno.ilmn12.hg19,
    IlluminaHumanMethylationEPICanno.ilm10b4.hg19
Depends:
    R (>= 3.5)
Suggests:
    knitr,
    rmarkdown,
    testthat,
    enrichplot
License: GPL-2
URL: https://github.com/reese3928/methylGSA
BugReports: https://github.com/reese3928/methylGSA/issues
RoxygenNote: 6.1.0
VignetteBuilder: knitr
biocViews: DNAMethylation,DifferentialMethylation,GeneSetEnrichment,Regression,
    GeneRegulation,Pathways