From 5b1688f28e7894a32f5902200e4de1e53f7b8e73 Mon Sep 17 00:00:00 2001 From: reality Date: Tue, 16 Aug 2022 17:28:16 +0100 Subject: [PATCH 1/4] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 74c32b1..b14e78b 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ patients described by HPO classes. For more information, please read the [prepri ## Installation -Here is the most recent [stable release](https://github.com/reality/klarigi/releases/tag/0.1.1). To install, you just have to extract either the ZIP or Tar file, then either run the ```klarigi``` binary from the extracted folder directly, or add it to your PATH (see the later linked tutorial for an example). +Here is the most recent [stable release](https://github.com/reality/klarigi/releases/tag/0.1.2). To install, you just have to extract either the ZIP or Tar file, then either run the ```klarigi``` binary from the extracted folder directly, or add it to your PATH (see the later linked tutorial for an example). ## Guide From 137192be100c538208c1182a976cb3e47d9284f1 Mon Sep 17 00:00:00 2001 From: reality Date: Tue, 16 Aug 2022 17:28:44 +0100 Subject: [PATCH 2/4] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b14e78b..d10fae0 100644 --- a/README.md +++ b/README.md @@ -15,7 +15,7 @@ This [tutorial](https://colab.research.google.com/drive/18BxV-mOItKpOu_rtrb1_WSn ## Useful Links and Information * Papers: - * [Klarigi: Characteristic Explanations for Semantic Data](https://www.biorxiv.org/content/10.1101/2021.06.14.448423v2) + * [Klarigi: Characteristic Explanations for Semantic Data](https://www.biorxiv.org/content/10.1101/2021.06.14.448423v4) * This paper described the algorithms and thinking in-depth, with much discussion and application to two use cases. * [Multi-faceted Semantic Clustering With Text-derived Phenotypes](https://www.medrxiv.org/content/10.1101/2021.05.26.21257830v1) * This describes some of the very early thoughts behind the algorithm, but doesn't represent the current state. From be575ffaa263c6ace3e5a3e10538a0da6c86811c Mon Sep 17 00:00:00 2001 From: reality Date: Tue, 16 Aug 2022 17:29:08 +0100 Subject: [PATCH 3/4] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index d10fae0..12d8339 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ This application will derive characteristic and discriminatory explanations for groups of entities described by ontology classes. For example, groups of -patients described by HPO classes. For more information, please read the [preprint](https://www.biorxiv.org/content/10.1101/2021.06.14.448423v2). +patients described by HPO classes. For more information, please read the [preprint](https://www.biorxiv.org/content/10.1101/2021.06.14.448423v4). ## Installation From fc1df017c74e10d7b7f35d0321bf24c6b3eb3171 Mon Sep 17 00:00:00 2001 From: reality Date: Tue, 30 Aug 2022 20:27:56 +0100 Subject: [PATCH 4/4] fix tutorial link --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 12d8339..ac94435 100644 --- a/README.md +++ b/README.md @@ -10,7 +10,7 @@ Here is the most recent [stable release](https://github.com/reality/klarigi/rele ## Guide -This [tutorial](https://colab.research.google.com/drive/18BxV-mOItKpOu_rtrb1_WSnXeB4YsRYi?usp=sharing) will walk you through how to use Klarigi. You can also run ```klarigi -h``` to see a full list of options and parameters. +This [tutorial](https://colab.research.google.com/drive/1qQWqD6gOTieuUwsZSGZLW3-WbsZKyGs4?usp=sharing) will walk you through how to use Klarigi. You can also run ```klarigi -h``` to see a full list of options and parameters. ## Useful Links and Information