data_sets

Data Sets

Set 1. chimeraviz example data

This dataset contains example fusion output from the chimeraviz BioConductor package.

Root directory: /home/projects/hackseq17_3/datasets/chimeraviz_examples/

Relevant files:

• FusionMap_01_TestDataset_InputFastq.FusionReport.txt - FusionMap output
• PRADA.acc.fusion.fq.TAF.tsv - PRADA output
• defuse_833ke_results.filtered.tsv - DeFuse output
• ericscript_SRR1657556.results.total.tsv - EricScript output
• fusioncatcher_833ke_final-list-candidate-fusion-genes.txt - FusionCatcher output
• infusion_fusions.txt - Infusion output
• jaffa_results.csv - JAFFA results
• soapfuse_833ke_final.Fusion.specific.for.genes - SOAPFuse results
• star-fusion.fusion_candidates.final.abridged.txt - STARfusion results

Set 2. FusionCatcher example data

This data set contains a small FASTQ subset of files, containing reads supporting the fusions described on the fusioncatcher github page.

Root directory: /home/projects/hackseq17_3/datasets/fusioncatcher_examples/

Relevant files:

• final-list_candidate-fusion-genes.txt - fusioncatcher output
• readme.txt - README describing the detected fusions
• reads_1.fq.gz - Read 1 file
• reads_2.fq.gz - Read 2 file