diff --git a/processors/README.md b/processors/README.md new file mode 100644 index 0000000..dbd7614 --- /dev/null +++ b/processors/README.md @@ -0,0 +1,3 @@ +# Processors + +This directory contains a work-in-progress collection of processors written in a variety of languages, which can be used as a starting point for your pipelines or own processor implementations. diff --git a/processors/shacl-validator-ts/.eslintignore b/processors/shacl-validator-ts/.eslintignore new file mode 100644 index 0000000..dd87e2d --- /dev/null +++ b/processors/shacl-validator-ts/.eslintignore @@ -0,0 +1,2 @@ +node_modules +build diff --git a/processors/shacl-validator-ts/.eslintrc.json b/processors/shacl-validator-ts/.eslintrc.json new file mode 100644 index 0000000..bc3072f --- /dev/null +++ b/processors/shacl-validator-ts/.eslintrc.json @@ -0,0 +1,27 @@ +{ + "env": { + "browser": true, + "es2021": true + }, + "extends": [ + "eslint:recommended", + "plugin:@typescript-eslint/recommended", + "prettier" + ], + "parser": "@typescript-eslint/parser", + "parserOptions": { + "ecmaVersion": "latest", + "sourceType": "module" + }, + "plugins": ["@typescript-eslint"], + "rules": { + "indent": ["error", 2], + "linebreak-style": ["error", "unix"], + "quotes": ["error", "double"], + "semi": ["error", "always"], + "@typescript-eslint/no-unused-vars": "warn", + "@typescript-eslint/ban-types": "off", + "default-case": "error", + "no-constant-condition": "off" + } +} diff --git a/processors/shacl-validator-ts/.gitignore b/processors/shacl-validator-ts/.gitignore new file mode 100644 index 0000000..53478c3 --- /dev/null +++ b/processors/shacl-validator-ts/.gitignore @@ -0,0 +1,178 @@ +# Outputs +lib + +# Based on https://raw.githubusercontent.com/github/gitignore/main/Node.gitignore + +# Logs + +logs +_.log +npm-debug.log_ +yarn-debug.log* +yarn-error.log* +lerna-debug.log* +.pnpm-debug.log* + +# Caches + +.cache + +# Diagnostic reports (https://nodejs.org/api/report.html) + +report.[0-9]_.[0-9]_.[0-9]_.[0-9]_.json + +# Runtime data + +pids +_.pid +_.seed +*.pid.lock + +# Directory for instrumented libs generated by jscoverage/JSCover + +lib-cov + +# Coverage directory used by tools like istanbul + +coverage +*.lcov + +# nyc test coverage + +.nyc_output + +# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files) + +.grunt + +# Bower dependency directory (https://bower.io/) + +bower_components + +# node-waf configuration + +.lock-wscript + +# Compiled binary addons (https://nodejs.org/api/addons.html) + +build/Release + +# Dependency directories + +node_modules/ +jspm_packages/ + +# Snowpack dependency directory (https://snowpack.dev/) + +web_modules/ + +# TypeScript cache + +*.tsbuildinfo + +# Optional npm cache directory + +.npm + +# Optional eslint cache + +.eslintcache + +# Optional stylelint cache + +.stylelintcache + +# Microbundle cache + +.rpt2_cache/ +.rts2_cache_cjs/ +.rts2_cache_es/ +.rts2_cache_umd/ + +# Optional REPL history + +.node_repl_history + +# Output of 'npm pack' + +*.tgz + +# Yarn Integrity file + +.yarn-integrity + +# dotenv environment variable files + +.env +.env.development.local +.env.test.local +.env.production.local +.env.local + +# parcel-bundler cache (https://parceljs.org/) + +.parcel-cache + +# Next.js build output + +.next +out + +# Nuxt.js build / generate output + +.nuxt +dist + +# Gatsby files + +# Comment in the public line in if your project uses Gatsby and not Next.js + +# https://nextjs.org/blog/next-9-1#public-directory-support + +# public + +# vuepress build output + +.vuepress/dist + +# vuepress v2.x temp and cache directory + +.temp + +# Docusaurus cache and generated files + +.docusaurus + +# Serverless directories + +.serverless/ + +# FuseBox cache + +.fusebox/ + +# DynamoDB Local files + +.dynamodb/ + +# TernJS port file + +.tern-port + +# Stores VSCode versions used for testing VSCode extensions + +.vscode-test + +# yarn v2 + +.yarn/cache +.yarn/unplugged +.yarn/build-state.yml +.yarn/install-state.gz +.pnp.* + +# IntelliJ based IDEs +.idea + +# Finder (MacOS) folder config +.DS_Store diff --git a/processors/shacl-validator-ts/.npmignore b/processors/shacl-validator-ts/.npmignore new file mode 100644 index 0000000..349c45f --- /dev/null +++ b/processors/shacl-validator-ts/.npmignore @@ -0,0 +1,2 @@ +* +!lib diff --git a/processors/shacl-validator-ts/.prettierignore b/processors/shacl-validator-ts/.prettierignore new file mode 100644 index 0000000..3c3629e --- /dev/null +++ b/processors/shacl-validator-ts/.prettierignore @@ -0,0 +1 @@ +node_modules diff --git a/processors/shacl-validator-ts/.prettierrc.json b/processors/shacl-validator-ts/.prettierrc.json new file mode 100644 index 0000000..c4664cb --- /dev/null +++ b/processors/shacl-validator-ts/.prettierrc.json @@ -0,0 +1,6 @@ +{ + "trailingComma": "all", + "tabWidth": 2, + "semi": true, + "singleQuote": false +} diff --git a/processors/shacl-validator-ts/index.ttl b/processors/shacl-validator-ts/index.ttl new file mode 100644 index 0000000..0e65174 --- /dev/null +++ b/processors/shacl-validator-ts/index.ttl @@ -0,0 +1,58 @@ +@prefix rdf: . +@prefix rdfc: . +@prefix sh: . +@prefix xsd: . + + + a rdfc:Processor ; + rdfc:target rdfc:node ; + rdfc:version "0.0.1" ; + rdfc:author "Jens Pots" ; + rdfc:license "MIT" ; + rdfc:prepare "npm run build" ; + rdfc:entrypoint "build/index.js" . + +[] + a sh:NodeShape ; + sh:closed true ; + sh:ignoredProperties ( rdf:type ) ; + sh:targetClass ; + sh:property [ + sh:maxCount 1 ; + sh:minCount 1 ; + sh:name "arguments" ; + sh:path rdfc:arguments ; + sh:node [ + sh:property [ + sh:maxCount 1 ; + sh:minCount 1 ; + sh:name "incoming" ; + sh:path ; + sh:class rdfc:Reader; + ], [ + sh:maxCount 1 ; + sh:minCount 1 ; + sh:name "outgoing" ; + sh:path ; + sh:class rdfc:Writer; + ], [ + sh:maxCount 1 ; + sh:minCount 0 ; + sh:name "report" ; + sh:path ; + sh:class rdfc:Writer; + ], [ + sh:maxCount 1 ; + sh:minCount 0 ; + sh:name "mime" ; + sh:path ; + sh:datatype xsd:string; + ], [ + sh:maxCount 1 ; + sh:minCount 0 ; + sh:name "validation_is_fatal" ; + sh:path ; + sh:datatype xsd:bool; + ] ; + ] ; + ]. diff --git a/processors/shacl-validator-ts/package-lock.json b/processors/shacl-validator-ts/package-lock.json new file mode 100644 index 0000000..49c7763 --- /dev/null +++ b/processors/shacl-validator-ts/package-lock.json @@ -0,0 +1,7979 @@ +{ + "name": "shacl-validator-ts", + "version": "0.0.1", + "lockfileVersion": 3, + "requires": true, + "packages": { + "": { + "name": "shacl-validator-ts", + "version": "0.0.1", + "license": "MIT", + "dependencies": { + "@rdfjs/formats": "^4.0.0", + "@rdfjs/serializer-turtle": "^1.1.3", + "jvm-runner-ts": "file:../../runners/nodejs", + "rdf-ext": "^2.5.2", + "shacl-engine": "^1.0.0" + }, + "devDependencies": { + "@types/rdf-ext": "^2.5.0", + "@typescript-eslint/eslint-plugin": "^7.15.0", + "@typescript-eslint/parser": "^7.15.0", + "eslint": "^8.57.0", + 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"description": "A SHACL validator processor for RDF-Connect, written in TypeScript.", + "main": "dist/index.js", + "scripts": { + "build": "tsc && tsc-alias", + "test": "vitest run --coverage --coverage.include src", + "format": "eslint --fix . && prettier --write ." + }, + "repository": { + "type": "git", + "url": "git+https://github.com/rdf-connect/orchestrator.git" + }, + "keywords": [ + "rdf-connect" + ], + "author": "Jens Pots", + "license": "MIT", + "bugs": { + "url": "https://github.com/rdf-connect/orchestrator/issues" + }, + "homepage": "https://github.com/rdf-connect/orchestrator#readme", + "devDependencies": { + "@types/rdf-ext": "^2.5.0", + "@typescript-eslint/eslint-plugin": "^7.15.0", + "@typescript-eslint/parser": "^7.15.0", + "eslint": "^8.57.0", + "eslint-config-prettier": "^9.1.0", + "prettier": "^3.3.2", + "tsc-alias": "^1.8.10", + "typescript": "^5.5.3", + "vite-tsconfig-paths": "^4.3.2", + "vitest": "^2.0.0" + }, + "dependencies": { + "@rdfjs/formats": "^4.0.0", + "@rdfjs/serializer-turtle": "^1.1.3", + "jvm-runner-ts": "file:../../runners/nodejs", + "rdf-ext": "^2.5.2", + "shacl-engine": "^1.0.0" + } +} diff --git a/processors/shacl-validator-ts/src/index.ts b/processors/shacl-validator-ts/src/index.ts new file mode 100644 index 0000000..b2e5a55 --- /dev/null +++ b/processors/shacl-validator-ts/src/index.ts @@ -0,0 +1,107 @@ +import { Arguments, Processor } from "jvm-runner-ts"; +import rdf, { PrefixMapFactory } from "rdf-ext"; +import Serializer from "@rdfjs/serializer-turtle"; +import formatsPretty from "@rdfjs/formats/pretty.js"; +import { Validator } from "shacl-engine"; +import { Readable } from "stream"; + +export default class SHACLValidator extends Processor { + private incoming = this.args.get("input", { + type: "reader", + list: "false", + nullable: "false", + }); + + private outgoing = this.args.get("outgoing", { + type: "writer", + list: "false", + nullable: "false", + }); + + private report = this.args.get("report", { + type: "writer", + list: "false", + nullable: "true", + }); + + private path = this.args.get("path", { + type: "string", + list: "false", + nullable: "false", + }); + + private mime = + this.args.get("mime", { + type: "string", + list: "false", + nullable: "true", + }) ?? "text/turtle"; + + private validationIsFatal = + this.args.get("validation_is_fatal", { + type: "boolean", + list: "false", + nullable: "true", + }) ?? false; + + constructor(args: Arguments) { + super(args); + + // Use pretty formatting. + rdf.formats.import(formatsPretty); + } + + async exec() { + // Create a new serializer for the SHACL reports. + const prefixes = new PrefixMapFactory().prefixMap(); + prefixes.set("sh", rdf.namedNode("http://www.w3.org/ns/shacl#")); + const serializer = new Serializer({ prefixes }); + + // Create a new parser for the incoming data. + const parser = rdf.formats.parsers.get(this.mime); + if (!parser) { + throw Error("Could not initialize parser"); + } + + // Create a new validator. + const res = await rdf.fetch(this.path); + if (!res.ok) { + throw Error("Could not parse SHACL path."); + } + + const shapes = await res.dataset().catch(() => { + throw Error("Could not parse SHACL file."); + }); + + // Parse input stream using shape stream. + // @ts-expect-error Factory is valid. + const validator = new Validator(shapes, { factory: rdf }); + + // eslint-ignore no-constant-condition + while (true) { + // Parse data into a dataset. + const data = await this.incoming.read(); + const rawStream = Readable.from(data); + const quadStream = parser.import(rawStream); + const dataset = await rdf + .dataset() + .import(quadStream) + .catch(() => { + throw new Error("The incoming data could not be parsed"); + }); + + // Run through validator. + const result = await validator.validate({ dataset }); + + // Pass through data if valid. + if (result.conforms) { + this.outgoing.write(data); + } else if (this.validationIsFatal) { + throw new Error("Validation failed"); + } else if (this.report) { + const resultRaw = serializer.transform(result.dataset); + this.report.write(new TextEncoder().encode(resultRaw)); + } + } + } +} diff --git a/processors/shacl-validator-ts/test/index.test.ts b/processors/shacl-validator-ts/test/index.test.ts new file mode 100644 index 0000000..e69de29 diff --git a/processors/shacl-validator-ts/tsconfig.json b/processors/shacl-validator-ts/tsconfig.json new file mode 100644 index 0000000..f2ee90d --- /dev/null +++ b/processors/shacl-validator-ts/tsconfig.json @@ -0,0 +1,111 @@ +{ + "compilerOptions": { + /* Visit https://aka.ms/tsconfig to read more about this file */ + + /* Projects */ + "incremental": false /* Save .tsbuildinfo files to allow for incremental compilation of projects. */, + // "composite": true, /* Enable constraints that allow a TypeScript project to be used with project references. */ + // "tsBuildInfoFile": "./.tsbuildinfo", /* Specify the path to .tsbuildinfo incremental compilation file. */ + // "disableSourceOfProjectReferenceRedirect": true, /* Disable preferring source files instead of declaration files when referencing composite projects. */ + // "disableSolutionSearching": true, /* Opt a project out of multi-project reference checking when editing. */ + // "disableReferencedProjectLoad": true, /* Reduce the number of projects loaded automatically by TypeScript. */ + + /* Language and Environment */ + "target": "es2016" /* Set the JavaScript language version for emitted JavaScript and include compatible library declarations. */, + // "lib": [], /* Specify a set of bundled library declaration files that describe the target runtime environment. */ + // "jsx": "preserve", /* Specify what JSX code is generated. */ + "experimentalDecorators": true /* Enable experimental support for legacy experimental decorators. */, + "emitDecoratorMetadata": true /* Emit design-type metadata for decorated declarations in source files. */, + // "jsxFactory": "", /* Specify the JSX factory function used when targeting React JSX emit, e.g. 'React.createElement' or 'h'. */ + // "jsxFragmentFactory": "", /* Specify the JSX Fragment reference used for fragments when targeting React JSX emit e.g. 'React.Fragment' or 'Fragment'. */ + // "jsxImportSource": "", /* Specify module specifier used to import the JSX factory functions when using 'jsx: react-jsx*'. */ + // "reactNamespace": "", /* Specify the object invoked for 'createElement'. This only applies when targeting 'react' JSX emit. */ + // "noLib": true, /* Disable including any library files, including the default lib.d.ts. */ + // "useDefineForClassFields": true, /* Emit ECMAScript-standard-compliant class fields. */ + // "moduleDetection": "auto", /* Control what method is used to detect module-format JS files. */ + + /* Modules */ + "module": "commonjs" /* Specify what module code is generated. */, + "rootDir": "./src" /* Specify the root folder within your source files. */, + // "moduleResolution": "node10", /* Specify how TypeScript looks up a file from a given module specifier. */ + // "baseUrl": "./", /* Specify the base directory to resolve non-relative module names. */ + // "paths": {}, /* Specify a set of entries that re-map imports to additional lookup locations. */ + // "rootDirs": [], /* Allow multiple folders to be treated as one when resolving modules. */ + // "typeRoots": [], /* Specify multiple folders that act like './node_modules/@types'. */ + // "types": [], /* Specify type package names to be included without being referenced in a source file. */ + // "allowUmdGlobalAccess": true, /* Allow accessing UMD globals from modules. */ + // "moduleSuffixes": [], /* List of file name suffixes to search when resolving a module. */ + // "allowImportingTsExtensions": true, /* Allow imports to include TypeScript file extensions. Requires '--moduleResolution bundler' and either '--noEmit' or '--emitDeclarationOnly' to be set. */ + // "resolvePackageJsonExports": true, /* Use the package.json 'exports' field when resolving package imports. */ + // "resolvePackageJsonImports": true, /* Use the package.json 'imports' field when resolving imports. */ + // "customConditions": [], /* Conditions to set in addition to the resolver-specific defaults when resolving imports. */ + // "resolveJsonModule": true, /* Enable importing .json files. */ + // "allowArbitraryExtensions": true, /* Enable importing files with any extension, provided a declaration file is present. */ + // "noResolve": true, /* Disallow 'import's, 'require's or ''s from expanding the number of files TypeScript should add to a project. */ + + /* JavaScript Support */ + // "allowJs": true, /* Allow JavaScript files to be a part of your program. Use the 'checkJS' option to get errors from these files. */ + // "checkJs": true, /* Enable error reporting in type-checked JavaScript files. */ + // "maxNodeModuleJsDepth": 1, /* Specify the maximum folder depth used for checking JavaScript files from 'node_modules'. Only applicable with 'allowJs'. */ + + /* Emit */ + // "declaration": true /* Generate .d.ts files from TypeScript and JavaScript files in your project. */, + // "declarationMap": true /* Create sourcemaps for d.ts files. */, + // "emitDeclarationOnly": true, /* Only output d.ts files and not JavaScript files. */ + // "sourceMap": true, /* Create source map files for emitted JavaScript files. */ + // "inlineSourceMap": true, /* Include sourcemap files inside the emitted JavaScript. */ + // "outFile": "", /* Specify a file that bundles all outputs into one JavaScript file. If 'declaration' is true, also designates a file that bundles all .d.ts output. */ + "outDir": "./build/" /* Specify an output folder for all emitted files. */, + // "removeComments": true, /* Disable emitting comments. */ + // "noEmit": true, /* Disable emitting files from a compilation. */ + // "importHelpers": true, /* Allow importing helper functions from tslib once per project, instead of including them per-file. */ + // "importsNotUsedAsValues": "remove", /* Specify emit/checking behavior for imports that are only used for types. */ + // "downlevelIteration": true, /* Emit more compliant, but verbose and less performant JavaScript for iteration. */ + // "sourceRoot": "", /* Specify the root path for debuggers to find the reference source code. */ + // "mapRoot": "", /* Specify the location where debugger should locate map files instead of generated locations. */ + // "inlineSources": true, /* Include source code in the sourcemaps inside the emitted JavaScript. */ + // "emitBOM": true, /* Emit a UTF-8 Byte Order Mark (BOM) in the beginning of output files. */ + "newLine": "lf" /* Set the newline character for emitting files. */, + // "stripInternal": true, /* Disable emitting declarations that have '@internal' in their JSDoc comments. */ + // "noEmitHelpers": true, /* Disable generating custom helper functions like '__extends' in compiled output. */ + // "noEmitOnError": true, /* Disable emitting files if any type checking errors are reported. */ + // "preserveConstEnums": true, /* Disable erasing 'const enum' declarations in generated code. */ + // "declarationDir": "./", /* Specify the output directory for generated declaration files. */ + // "preserveValueImports": true, /* Preserve unused imported values in the JavaScript output that would otherwise be removed. */ + + /* Interop Constraints */ + // "isolatedModules": true, /* Ensure that each file can be safely transpiled without relying on other imports. */ + // "verbatimModuleSyntax": true, /* Do not transform or elide any imports or exports not marked as type-only, ensuring they are written in the output file's format based on the 'module' setting. */ + // "allowSyntheticDefaultImports": true, /* Allow 'import x from y' when a module doesn't have a default export. */ + "esModuleInterop": true /* Emit additional JavaScript to ease support for importing CommonJS modules. This enables 'allowSyntheticDefaultImports' for type compatibility. */, + // "preserveSymlinks": true, /* Disable resolving symlinks to their realpath. This correlates to the same flag in node. */ + "forceConsistentCasingInFileNames": true /* Ensure that casing is correct in imports. */, + + /* Type Checking */ + "strict": true /* Enable all strict type-checking options. */, + // "noImplicitAny": true, /* Enable error reporting for expressions and declarations with an implied 'any' type. */ + // "strictNullChecks": true, /* When type checking, take into account 'null' and 'undefined'. */ + // "strictFunctionTypes": true, /* When assigning functions, check to ensure parameters and the return values are subtype-compatible. */ + // "strictBindCallApply": true, /* Check that the arguments for 'bind', 'call', and 'apply' methods match the original function. */ + // "strictPropertyInitialization": true, /* Check for class properties that are declared but not set in the constructor. */ + // "noImplicitThis": true, /* Enable error reporting when 'this' is given the type 'any'. */ + // "useUnknownInCatchVariables": true, /* Default catch clause variables as 'unknown' instead of 'any'. */ + // "alwaysStrict": true, /* Ensure 'use strict' is always emitted. */ + // "noUnusedLocals": true, /* Enable error reporting when local variables aren't read. */ + // "noUnusedParameters": true, /* Raise an error when a function parameter isn't read. */ + // "exactOptionalPropertyTypes": true, /* Interpret optional property types as written, rather than adding 'undefined'. */ + // "noImplicitReturns": true, /* Enable error reporting for codepaths that do not explicitly return in a function. */ + // "noFallthroughCasesInSwitch": true, /* Enable error reporting for fallthrough cases in switch statements. */ + // "noUncheckedIndexedAccess": true, /* Add 'undefined' to a type when accessed using an index. */ + // "noImplicitOverride": true, /* Ensure overriding members in derived classes are marked with an override modifier. */ + // "noPropertyAccessFromIndexSignature": true, /* Enforces using indexed accessors for keys declared using an indexed type. */ + // "allowUnusedLabels": true, /* Disable error reporting for unused labels. */ + // "allowUnreachableCode": true, /* Disable error reporting for unreachable code. */ + + /* Completeness */ + // "skipDefaultLibCheck": true, /* Skip type checking .d.ts files that are included with TypeScript. */ + "skipLibCheck": true /* Skip type checking all .d.ts files. */ + }, + "include": ["src/**/*", "types/**/*.d.ts"], + "exclude": ["node_modules"] +} diff --git a/processors/shacl-validator-ts/types/shacl-engine.d.ts b/processors/shacl-validator-ts/types/shacl-engine.d.ts new file mode 100644 index 0000000..989e55a --- /dev/null +++ b/processors/shacl-validator-ts/types/shacl-engine.d.ts @@ -0,0 +1,46 @@ +declare module "shacl-engine" { + import DatasetCore from "@rdfjs/dataset/DatasetCore"; + import { Quad } from "@rdfjs/types"; + import DataFactory from "@rdfjs/data-model/Factory"; + + class Shape { + constructor( + ptr: never, + options: { + validator: never; + }, + ); + } + + type Result = { + args: never; + }; + + type Report = { + results: Array; + conforms: boolean; + dataset: DatasetCore; // TODO: check + ptr: never; // TODO: check + term: never; // TODO: check + build: () => never; // TODO: check + coverage: () => never; // TODO: check + }; + + class Validator { + constructor( + dataset: DatasetCore, + options: { + coverage?: boolean; + debug?: boolean; + details?: boolean; + factory: DataFactory; + trace?: boolean; + }, + ); + + validate: (data: { + dataset: DatasetCore; + terms?: Array; + }) => Promise; + } +} diff --git a/processors/shacl-validator-ts/vite.config.ts b/processors/shacl-validator-ts/vite.config.ts new file mode 100644 index 0000000..590f752 --- /dev/null +++ b/processors/shacl-validator-ts/vite.config.ts @@ -0,0 +1,6 @@ +import { defineConfig } from "vitest/config"; +import tsconfigPaths from "vite-tsconfig-paths"; + +defineConfig({ + plugins: [tsconfigPaths()], +});