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Interpretation of the differential splicing testing results #187

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sneha100895 opened this issue Jun 7, 2023 · 0 comments
Open

Interpretation of the differential splicing testing results #187

sneha100895 opened this issue Jun 7, 2023 · 0 comments

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@sneha100895
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Hi,

I have successfully run the differential splicing analysis using spladder, but I need some help with interpreting certain columns in the output file : test_results_C{C}_{ET}.tsv

  1. What does the binary values in the "alt_usage" column mean? I am assuming that a value of 0 indicates absence and 1 indicates the presence of the exon in the transcript. Is it correct?

  2. How exactly is the mean_event_count (mean support for tested splice path) calculated?

Thank you!
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