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llvmlite.binding' has no attribute 'get_host_cpu_name #169
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Hi. |
Dear @ArashDepp , Thanks a lot for reaching out. This looks like an issue with your environment, as numba is a just a dependency that SplAdder uses. So the error is not directly related to the SplAdder code. I would recommend to install SplAdder into a clean environment. You could do this by ether using a python Best, Andre |
Hi Andre... |
### Description
I installed the package on linux cluster using pip. Installation was successfull. Here is the full list of messages that appeared during installation.
Defaulting to user installation because normal site-packages is not writeable
Collecting spladder==3.0.0
Downloading spladder-3.0.0-py2.py3-none-any.whl (7.9 MB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.9/7.9 MB 25.1 MB/s eta 0:00:00
Requirement already satisfied: h5py>=2.2 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (3.7.0)
Requirement already satisfied: pysam>=0.15.3 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (0.19.1)
Requirement already satisfied: statsmodels>=0.9.0 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (0.13.2)
Requirement already satisfied: scipy>=1.3 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (1.7.3)
Requirement already satisfied: intervaltree>=3.0.0 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (3.0.2)
Requirement already satisfied: numpy>=1.14.6 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (1.21.6)
Requirement already satisfied: matplotlib>=2.2 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from spladder==3.0.0) (3.5.2)
Requirement already satisfied: numba>=0.52.0 in ./.local/lib/python3.7/site-packages (from spladder==3.0.0) (0.56.0)
Requirement already satisfied: sortedcontainers<3.0,>=2.0 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from intervaltree>=3.0.0->spladder==3.0.0) (2.4.0)
Requirement already satisfied: cycler>=0.10 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (0.11.0)
Requirement already satisfied: packaging>=20.0 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (21.3)
Requirement already satisfied: fonttools>=4.22.0 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (4.34.4)
Requirement already satisfied: pillow>=6.2.0 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (9.2.0)
Requirement already satisfied: python-dateutil>=2.7 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (2.8.2)
Requirement already satisfied: pyparsing>=2.2.1 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (3.0.9)
Requirement already satisfied: kiwisolver>=1.0.1 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from matplotlib>=2.2->spladder==3.0.0) (1.4.3)
Requirement already satisfied: setuptools in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from numba>=0.52.0->spladder==3.0.0) (59.8.0)
Requirement already satisfied: importlib-metadata in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from numba>=0.52.0->spladder==3.0.0) (4.11.4)
Requirement already satisfied: llvmlite<0.40,>=0.39.0dev0 in ./.local/lib/python3.7/site-packages (from numba>=0.52.0->spladder==3.0.0) (0.39.0)
Requirement already satisfied: pandas>=0.25 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from statsmodels>=0.9.0->spladder==3.0.0) (1.3.5)
Requirement already satisfied: patsy>=0.5.2 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from statsmodels>=0.9.0->spladder==3.0.0) (0.5.2)
Requirement already satisfied: typing-extensions in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from kiwisolver>=1.0.1->matplotlib>=2.2->spladder==3.0.0) (3.10.0.2)
Requirement already satisfied: pytz>=2017.3 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from pandas>=0.25->statsmodels>=0.9.0->spladder==3.0.0) (2022.1)
Requirement already satisfied: six in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from patsy>=0.5.2->statsmodels>=0.9.0->spladder==3.0.0) (1.16.0)
Requirement already satisfied: zipp>=0.5 in /usr/local/Anaconda/envs/py3.7/lib/python3.7/site-packages (from importlib-metadata->numba>=0.52.0->spladder==3.0.0) (3.8.0)
Installing collected packages: spladder
Successfully installed spladder-3.0.0
What I Did
Then I typed in the following command:
I mostly work with R and have very little experience with python. Could you please help me resolve this error? I tried multiple versions of Spladder (3 onwards) and all gave the same error. Your response is greatly appreciated.
The text was updated successfully, but these errors were encountered: