From de6ec8d06bf8d8ac436ccebbb5b04526d2d431f9 Mon Sep 17 00:00:00 2001 From: Benjamin Harris <113062337+hbjamin@users.noreply.github.com> Date: Wed, 29 May 2024 12:44:36 -0400 Subject: [PATCH 001/103] Update PMTTRANSIT.ratdb Included average timing distributions of 12" and 10" pmts from dark box tests at Berkeley --- ratdb/PMTTRANSIT.ratdb | 22 +++++++++++++++++++--- 1 file changed, 19 insertions(+), 3 deletions(-) diff --git a/ratdb/PMTTRANSIT.ratdb b/ratdb/PMTTRANSIT.ratdb index b13bfdb7..482816d8 100644 --- a/ratdb/PMTTRANSIT.ratdb +++ b/ratdb/PMTTRANSIT.ratdb @@ -23,6 +23,19 @@ time: [-20.0, -19.21568627, -18.43137255, -17.64705882, -16.8627451, -16.0784313 time_prob:[1.40806896e-23, 7.11618481e-22, 3.07415373e-20, 1.13516505e-18, 3.58300581e-17, 9.66698580e-16, 2.22940883e-14, 4.39484357e-13, 7.40546261e-12, 1.06663550e-10, 1.31321230e-09, 1.38200279e-08, 1.24319131e-07, 9.55921167e-07, 6.28291610e-06, 3.52984398e-05, 1.69513710e-04, 6.95839718e-04, 2.44156712e-03, 7.32290148e-03, 1.87738257e-02, 4.11412460e-02, 7.70649974e-02, 1.23393409e-01, 1.68881403e-01, 1.97572620e-01, 1.97572620e-01, 1.68881403e-01, 1.23393409e-01, 7.70649974e-02, 4.11412460e-02, 1.87738257e-02, 7.32290148e-03, 2.44156712e-03, 6.95839718e-04, 1.69513710e-04, 3.52984398e-05, 6.28291610e-06, 9.55921167e-07, 1.24319131e-07, 1.38200279e-08, 1.31321230e-09, 1.06663550e-10, 7.40546261e-12, 4.39484357e-13, 2.22940883e-14, 9.66698580e-16, 3.58300581e-17, 1.13516505e-18, 3.07415373e-20, 7.11618481e-22, 1.40806896e-23], } +{ +name: "PMTTRANSIT", +index: "r11780_hqe_rev", +valid_begin : [0, 0], +valid_end : [0, 0], +cable_delay: 0.0, +time : [-20.0 , -19.9 , -19.8 , -19.7 , -19.6 , -19.5 , -19.4 , -19.3 , -19.2 , -19.1 , -19.0 , -18.9 , -18.8 , -18.7 , -18.6 , -18.5 , -18.4 , -18.3 , -18.2 , -18.1 , -18.0 , -17.9 , -17.8 , -17.7 , -17.6 , -17.5 , -17.4 , -17.3 , -17.2 , -17.1 , -17.0 , -16.9 , -16.8 , -16.7 , -16.6 , -16.5 , -16.4 , -16.3 , -16.2 , -16.1 , -16.0 , -15.9 , -15.8 , -15.7 , -15.6 , -15.5 , -15.4 , -15.3 , -15.2 , -15.1 , -15.0 , -14.9 , -14.8 , -14.7 , -14.6 , -14.5 , -14.4 , -14.3 , -14.2 , -14.1 , -14.0 , -13.9 , -13.8 , -13.7 , -13.6 , -13.5 , -13.4 , -13.3 , -13.2 , -13.1 , -13.0 , -12.9 , -12.8 , -12.7 , -12.6 , -12.5 , -12.4 , -12.3 , -12.2 , -12.1 , -12.0 , -11.9 , -11.8 , -11.7 , -11.6 , -11.5 , -11.4 , -11.3 , -11.2 , -11.1 , -11.0 , -10.9 , -10.8 , -10.7 , -10.6 , -10.5 , -10.4 , -10.3 , -10.2 , -10.1 , -10.0 , -9.9 , -9.8 , -9.7 , -9.6 , -9.5 , -9.4 , -9.3 , -9.2 , -9.1 , -9.0 , -8.9 , -8.8 , -8.7 , -8.6 , -8.5 , -8.4 , -8.3 , -8.2 , -8.1 , -8.0 , -7.9 , -7.8 , -7.7 , -7.6 , -7.5 , -7.4 , -7.3 , -7.2 , -7.1 , -7.0 , -6.9 , -6.8 , -6.7 , -6.6 , -6.5 , -6.4 , -6.3 , -6.2 , -6.1 , -6.0 , -5.9 , -5.8 , -5.7 , -5.6 , -5.5 , -5.4 , -5.3 , -5.2 , -5.1 , -5.0 , -4.9 , -4.8 , -4.7 , -4.6 , -4.5 , -4.4 , -4.3 , -4.2 , -4.1 , -4.0 , -3.9 , -3.8 , -3.7 , -3.6 , -3.5 , -3.4 , -3.3 , -3.2 , -3.1 , -3.0 , -2.9 , -2.8 , -2.7 , -2.6 , -2.5 , -2.4 , -2.3 , -2.2 , -2.1 , -2.0 , -1.9 , -1.8 , -1.7 , -1.6 , -1.5 , -1.4 , -1.3 , -1.2 , -1.1 , -1.0 , -0.9 , -0.8 , -0.7 , -0.6 , -0.5 , -0.4 , -0.3 , -0.2 , -0.1 , 0.0 , 0.1 , 0.2 , 0.3 , 0.4 , 0.5 , 0.6 , 0.7 , 0.8 , 0.9 , 1.0 , 1.1 , 1.2 , 1.3 , 1.4 , 1.5 , 1.6 , 1.7 , 1.8 , 1.9 , 2.0 , 2.1 , 2.2 , 2.3 , 2.4 , 2.5 , 2.6 , 2.7 , 2.8 , 2.9 , 3.0 , 3.1 , 3.2 , 3.3 , 3.4 , 3.5 , 3.6 , 3.7 , 3.8 , 3.9 , 4.0 , 4.1 , 4.2 , 4.3 , 4.4 , 4.5 , 4.6 , 4.7 , 4.8 , 4.9 , 5.0 , 5.1 , 5.2 , 5.3 , 5.4 , 5.5 , 5.6 , 5.7 , 5.8 , 5.9 , 6.0 , 6.1 , 6.2 , 6.3 , 6.4 , 6.5 , 6.6 , 6.7 , 6.8 , 6.9 , 7.0 , 7.1 , 7.2 , 7.3 , 7.4 , 7.5 , 7.6 , 7.7 , 7.8 , 7.9 , 8.0 , 8.1 , 8.2 , 8.3 , 8.4 , 8.5 , 8.6 , 8.7 , 8.8 , 8.9 , 9.0 , 9.1 , 9.2 , 9.3 , 9.4 , 9.5 , 9.6 , 9.7 , 9.8 , 9.9 , 10.0 , 10.1 , 10.2 , 10.3 , 10.4 , 10.5 , 10.6 , 10.7 , 10.8 , 10.9 , 11.0 , 11.1 , 11.2 , 11.3 , 11.4 , 11.5 , 11.6 , 11.7 , 11.8 , 11.9 , 12.0 , 12.1 , 12.2 , 12.3 , 12.4 , 12.5 , 12.6 , 12.7 , 12.8 , 12.9 , 13.0 , 13.1 , 13.2 , 13.3 , 13.4 , 13.5 , 13.6 , 13.7 , 13.8 , 13.9 , 14.0 , 14.1 , 14.2 , 14.3 , 14.4 , 14.5 , 14.6 , 14.7 , 14.8 , 14.9 , 15.0 , 15.1 , 15.2 , 15.3 , 15.4 , 15.5 , 15.6 , 15.7 , 15.8 , 15.9 , 16.0 , 16.1 , 16.2 , 16.3 , 16.4 , 16.5 , 16.6 , 16.7 , 16.8 , 16.9 , 17.0 , 17.1 , 17.2 , 17.3 , 17.4 , 17.5 , 17.6 , 17.7 , 17.8 , 17.9 , 18.0 , 18.1 , 18.2 , 18.3 , 18.4 , 18.5 , 18.6 , 18.7 , 18.8 , 18.9 , 19.0 , 19.1 , 19.2 , 19.3 , 19.4 , 19.5 , 19.6 , 19.7 , 19.8 , 19.9 , 20.0 , 20.1 , 20.2 , 20.3 , 20.4 , 20.5 , 20.6 , 20.7 , 20.8 , 20.9 , 21.0 , 21.1 , 21.2 , 21.3 , 21.4 , 21.5 , 21.6 , 21.7 , 21.8 , 21.9 , 22.0 , 22.1 , 22.2 , 22.3 , 22.4 , 22.5 , 22.6 , 22.7 , 22.8 , 22.9 , 23.0 , 23.1 , 23.2 , 23.3 , 23.4 , 23.5 , 23.6 , 23.7 , 23.8 , 23.9 , 24.0 , 24.1 , 24.2 , 24.3 , 24.4 , 24.5 , 24.6 , 24.7 , 24.8 , 24.9 , 25.0 , 25.1 , 25.2 , 25.3 , 25.4 , 25.5 , 25.6 , 25.7 , 25.8 , 25.9 , 26.0 , 26.1 , 26.2 , 26.3 , 26.4 , 26.5 , 26.6 , 26.7 , 26.8 , 26.9 , 27.0 , 27.1 , 27.2 , 27.3 , 27.4 , 27.5 , 27.6 , 27.7 , 27.8 , 27.9 , 28.0 , 28.1 , 28.2 , 28.3 , 28.4 , 28.5 , 28.6 , 28.7 , 28.8 , 28.9 , 29.0 , 29.1 , 29.2 , 29.3 , 29.4 , 29.5 , 29.6 , 29.7 , 29.8 , 29.9 , 30.0 , 30.1 , 30.2 , 30.3 , 30.4 , 30.5 , 30.6 , 30.7 , 30.8 , 30.9 , 31.0 , 31.1 , 31.2 , 31.3 , 31.4 , 31.5 , 31.6 , 31.7 , 31.8 , 31.9 , 32.0 , 32.1 , 32.2 , 32.3 , 32.4 , 32.5 , 32.6 , 32.7 , 32.8 , 32.9 , 33.0 , 33.1 , 33.2 , 33.3 , 33.4 , 33.5 , 33.6 , 33.7 , 33.8 , 33.9 , 34.0 , 34.1 , 34.2 , 34.3 , 34.4 , 34.5 , 34.6 , 34.7 , 34.8 , 34.9 , 35.0 , 35.1 , 35.2 , 35.3 , 35.4 , 35.5 , 35.6 , 35.7 , 35.8 , 35.9 , 36.0 , 36.1 , 36.2 , 36.3 , 36.4 , 36.5 , 36.6 , 36.7 , 36.8 , 36.9 , 37.0 , 37.1 , 37.2 , 37.3 , 37.4 , 37.5 , 37.6 , 37.7 , 37.8 , 37.9 , 38.0 , 38.1 , 38.2 , 38.3 , 38.4 , 38.5 , 38.6 , 38.7 , 38.8 , 38.9 , 39.0 , 39.1 , 39.2 , 39.3 , 39.4 , 39.5 , 39.6 , 39.7 , 39.8 , 39.9 , 40.0 , 40.1 , 40.2 , 40.3 , 40.4 , 40.5 , 40.6 , 40.7 , 40.8 , 40.9 , 41.0 , 41.1 , 41.2 , 41.3 , 41.4 , 41.5 , 41.6 , 41.7 , 41.8 , 41.9 , 42.0 , 42.1 , 42.2 , 42.3 , 42.4 , 42.5 , 42.6 , 42.7 , 42.8 , 42.9 , 43.0 , 43.1 , 43.2 , 43.3 , 43.4 , 43.5 , 43.6 , 43.7 , 43.8 , 43.9 , 44.0 , 44.1 , 44.2 , 44.3 , 44.4 , 44.5 , 44.6 , 44.7 , 44.8 , 44.9 , 45.0 , 45.1 , 45.2 , 45.3 , 45.4 , 45.5 , 45.6 , 45.7 , 45.8 , 45.9 , 46.0 , 46.1 , 46.2 , 46.3 , 46.4 , 46.5 , 46.6 , 46.7 , 46.8 , 46.9 , 47.0 , 47.1 , 47.2 , 47.3 , 47.4 , 47.5 , 47.6 , 47.7 , 47.8 , 47.9 , 48.0 , 48.1 , 48.2 , 48.3 , 48.4 , 48.5 , 48.6 , 48.7 , 48.8 , 48.9 , 49.0 , 49.1 , 49.2 , 49.3 , 49.4 , 49.5 , 49.6 , 49.7 , 49.8 , 49.9 , 50.0 , 50.1 , 50.2 , 50.3 , 50.4 , 50.5 , 50.6 , 50.7 , 50.8 , 50.9 , 51.0 , 51.1 , 51.2 , 51.3 , 51.4 , 51.5 , 51.6 , 51.7 , 51.8 , 51.9 , 52.0 , 52.1 , 52.2 , 52.3 , 52.4 , 52.5 , 52.6 , 52.7 , 52.8 , 52.9 , 53.0 , 53.1 , 53.2 , 53.3 , 53.4 , 53.5 , 53.6 , 53.7 , 53.8 , 53.9 , 54.0 , 54.1 , 54.2 , 54.3 , 54.4 , 54.5 , 54.6 , 54.7 , 54.8 , 54.9 , 55.0 , 55.1 , 55.2 , 55.3 , 55.4 , 55.5 , 55.6 , 55.7 , 55.8 , 55.9 , 56.0 , 56.1 , 56.2 , 56.3 , 56.4 , 56.5 , 56.6 , 56.7 , 56.8 , 56.9 , 57.0 , 57.1 , 57.2 , 57.3 , 57.4 , 57.5 , 57.6 , 57.7 , 57.8 , 57.9 , 58.0 , 58.1 , 58.2 , 58.3 , 58.4 , 58.5 , 58.6 , 58.7 , 58.8 , 58.9 , 59.0 , 59.1 , 59.2 , 59.3 , 59.4 , 59.5 , 59.6 , 59.7 , 59.8 , 59.9 , 60.0 , 60.1 , 60.2 , 60.3 , 60.4 , 60.5 , 60.6 , 60.7 , 60.8 , 60.9 , 61.0 , 61.1 , 61.2 , 61.3 , 61.4 , 61.5 , 61.6 , 61.7 , 61.8 , 61.9 , 62.0 , 62.1 , 62.2 , 62.3 , 62.4 , 62.5 , 62.6 , 62.7 , 62.8 , 62.9 , 63.0 , 63.1 , 63.2 , 63.3 , 63.4 , 63.5 , 63.6 , 63.7 , 63.8 , 63.9 , 64.0 , 64.1 , 64.2 , 64.3 , 64.4 , 64.5 , 64.6 , 64.7 , 64.8 , 64.9 , 65.0 , 65.1 , 65.2 , 65.3 , 65.4 , 65.5 , 65.6 , 65.7 , 65.8 , 65.9 , 66.0 , 66.1 , 66.2 , 66.3 , 66.4 , 66.5 , 66.6 , 66.7 , 66.8 , 66.9 , 67.0 , 67.1 , 67.2 , 67.3 , 67.4 , 67.5 , 67.6 , 67.7 , 67.8 , 67.9 , 68.0 , 68.1 , 68.2 , 68.3 , 68.4 , 68.5 , 68.6 , 68.7 , 68.8 , 68.9 , 69.0 , 69.1 , 69.2 , 69.3 , 69.4 , 69.5 , 69.6 , 69.7 , 69.8 , 69.9 , 70.0 , 70.1 , 70.2 , 70.3 , 70.4 , 70.5 , 70.6 , 70.7 , 70.8 , 70.9 , 71.0 , 71.1 , 71.2 , 71.3 , 71.4 , 71.5 , 71.6 , 71.7 , 71.8 , 71.9 , 72.0 , 72.1 , 72.2 , 72.3 , 72.4 , 72.5 , 72.6 , 72.7 , 72.8 , 72.9 , 73.0 , 73.1 , 73.2 , 73.3 , 73.4 , 73.5 , 73.6 , 73.7 , 73.8 , 73.9 , 74.0 , 74.1 , 74.2 , 74.3 , 74.4 , 74.5 , 74.6 , 74.7 , 74.8 , 74.9 , 75.0 , 75.1 , 75.2 , 75.3 , 75.4 , 75.5 , 75.6 , 75.7 , 75.8 , 75.9 , 76.0 , 76.1 , 76.2 , 76.3 , 76.4 , 76.5 , 76.6 , 76.7 , 76.8 , 76.9 , 77.0 , 77.1 , 77.2 , 77.3 , 77.4 , 77.5 , 77.6 , 77.7 , 77.8 , 77.9 , 78.0 , 78.1 , 78.2 , 78.3 , 78.4 , 78.5 , 78.6 , 78.7 , 78.8 , 78.9 , 79.0 , 79.1 , 79.2 , 79.3 , 79.4 , 79.5 , 79.6 , 79.7 , 79.8 , 79.9], +// Average distribution from dark box tests at Berkeley +// Transit time of 2.27 ns +// Late ratio of 8.11% +time_prob : [1.0295684447093295e-05, 1.0005440907763509e-05, 8.65327990079723e-06, 7.441897347036223e-06, 5.404665894004633e-06, 6.443874493762297e-06, 4.903564204108379e-06, 3.5132191231600398e-06, 3.294005009220272e-06, 3.1786166611446467e-06, 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previously just r11780_hqe_rev) --- ratdb/PMTTRANSIT.ratdb | 7 +++++-- 1 file changed, 5 insertions(+), 2 deletions(-) diff --git a/ratdb/PMTTRANSIT.ratdb b/ratdb/PMTTRANSIT.ratdb index 482816d8..f6ef94cc 100644 --- a/ratdb/PMTTRANSIT.ratdb +++ b/ratdb/PMTTRANSIT.ratdb @@ -36,7 +36,6 @@ time : [-20.0 , -19.9 , -19.8 , -19.7 , -19.6 , -19.5 , -19.4 , -19.3 , -19.2 , time_prob : [1.0295684447093295e-05, 1.0005440907763509e-05, 8.65327990079723e-06, 7.441897347036223e-06, 5.404665894004633e-06, 6.443874493762297e-06, 4.903564204108379e-06, 3.5132191231600398e-06, 3.294005009220272e-06, 3.1786166611446467e-06, 2.799724330627926e-06, 2.6679249855892243e-06, 3.21449964055082e-06, 3.715800513208914e-06, 4.328261609614684e-06, 6.09486088899795e-06, 4.901672621496921e-06, 5.259172940952912e-06, 3.5344023481749983e-06, 4.887356100583378e-06, 3.4618788605771803e-06, 3.853581878058707e-06, 5.048735214742655e-06, 6.581855447611584e-06, 6.5272865335183955e-06, 4.135928510389289e-06, 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pulse Gaussian distribution with mean=75 and sigma=1.5 //Late ratio (20ns to 80ns) 4.3% //All normalised so that pmax=100 -time_prob:[6.372073314671898e-51, 2.1131633185864248e-50, 6.965873393507018e-50, 2.282486955682661e-49, 7.434148734263409e-49, 2.4068243756973017e-48, 7.74546990506898e-48, 2.4776579742568847e-47, 7.87816644529279e-47, 2.4899989489405877e-46, 7.822820938125674e-46, 2.4429682868476552e-45, 7.583374136676322e-45, 2.3399002881174974e-44, 7.176661009672538e-44, 2.187951690736043e-43, 6.63045357607164e-43, 1.997280043505786e-42, 5.980326574612045e-42, 1.779922334898079e-41, 5.26583708618515e-41, 1.5485456015254664e-40, 4.526586179963315e-40, 1.3152484582168032e-39, 3.79870023495927e-39, 1.0905672709668396e-38, 3.1121470564342117e-38, 8.827911579962235e-38, 2.489121253328609e-37, 6.976287106069101e-37, 1.943537174854576e-36, 5.382097642459413e-36, 1.4814960813073116e-35, 4.053588467111433e-35, 1.1024756809124556e-34, 2.9804963546109635e-34, 8.009370534026972e-34, 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From: James Shen Date: Thu, 30 May 2024 14:31:34 -0400 Subject: [PATCH 003/103] Add MC charge information to Ntuple --- src/io/include/RAT/OutNtupleProc.hh | 2 ++ src/io/src/OutNtupleProc.cc | 6 ++++++ 2 files changed, 8 insertions(+) diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index 33499982..72bb6da3 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -95,6 +95,7 @@ class OutNtupleProc : public Processor { int mcpecount; std::vector mcpmtid; std::vector mcpmtnpe; + std::vector mcpmtcharge; // MCPE std::vector mcpehittime; std::vector mcpefrontendtime; @@ -103,6 +104,7 @@ class OutNtupleProc : public Processor { std::vector mcpex; std::vector mcpey; std::vector mcpez; + std::vector mcpecharge; // MCParticles int mcpcount; std::vector pdgcodes; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 0710ee37..fd08785e 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -133,6 +133,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { // Save full MC PMT hit information outputTree->Branch("mcPMTID", &mcpmtid); outputTree->Branch("mcPMTNPE", &mcpmtnpe); + outputTree->Branch("mcPMTCharge", &mcpmtcharge); outputTree->Branch("mcPEHitTime", &mcpehittime); outputTree->Branch("mcPEFrontEndTime", &mcpefrontendtime); @@ -143,6 +144,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("mcPEx", &mcpex); outputTree->Branch("mcPEy", &mcpey); outputTree->Branch("mcPEz", &mcpez); + outputTree->Branch("mcPECharge", &mcpecharge); } if (options.tracking) { // Save particle tracking information @@ -286,6 +288,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { // MCPMT information mcpmtid.clear(); mcpmtnpe.clear(); + mcpmtcharge.clear(); // MCPE information mcpehittime.clear(); @@ -295,6 +298,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { mcpex.clear(); mcpey.clear(); mcpez.clear(); + mcpecharge.clear(); mcnhits = mc->GetMCPMTCount(); mcpecount = mc->GetNumPE(); @@ -303,6 +307,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { DS::MCPMT *mcpmt = mc->GetMCPMT(ipmt); mcpmtid.push_back(mcpmt->GetID()); mcpmtnpe.push_back(mcpmt->GetMCPhotonCount()); + mcpmtcharge.push_back(mcpmt->GetCharge()); TVector3 position = pmtinfo->GetPosition(mcpmt->GetID()); for (int ipe = 0; ipe < mcpmt->GetMCPhotonCount(); ipe++) { RAT::DS::MCPhoton *mcph = mcpmt->GetMCPhoton(ipe); @@ -312,6 +317,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { mcpex.push_back(position.X()); mcpey.push_back(position.Y()); mcpez.push_back(position.Z()); + mcpecharge.push_back(mcph->GetCharge()); if (mcph->IsDarkHit()) { mcpeprocess.push_back(noise); continue; From 1e66f0235f9b01df4385e3d8cf5e81ac4651a0ec Mon Sep 17 00:00:00 2001 From: Eliot Keener Date: Tue, 28 May 2024 13:18:22 -0400 Subject: [PATCH 004/103] Updated charge data for r14688, r7081_hqe, and r11780_hqe_rev --- ratdb/PMTCHARGE.ratdb | 176 ++++++++++++++++++++++++++++++++++++++---- 1 file changed, 160 insertions(+), 16 deletions(-) diff --git a/ratdb/PMTCHARGE.ratdb b/ratdb/PMTCHARGE.ratdb index 92b9001f..4af2123e 100644 --- a/ratdb/PMTCHARGE.ratdb +++ b/ratdb/PMTCHARGE.ratdb @@ -19,27 +19,49 @@ valid_end: [0,0], charge:[0., 0.10204082, 0.20408163, 0.30612245, 0.40816327, 0.51020408,0.6122449, 0.71428571, 0.81632653, 0.91836735, 1.02040816, 1.12244898, 1.2244898, 1.32653061, 1.42857143, 1.53061224, 1.63265306, 1.73469388, 1.83673469, 1.93877551, 2.04081633, 2.14285714, 2.24489796, 2.34693878, 2.44897959, 2.55102041, 2.65306122, 2.75510204, 2.85714286, 2.95918367, 3.06122449, 3.16326531, 3.26530612, 3.36734694, 3.46938776, 3.57142857, 3.67346939, 3.7755102, 3.87755102, 3.97959184, 4.08163265, 4.18367347, 4.28571429, 4.3877551, 4.48979592, 4.59183673, 4.69387755, 4.79591837, 4.89795918, 5. ], charge_prob:[2.11743463e-02, 3.23358673e-02, 4.80226445e-02, 6.93577003e-02, 9.74160134e-02, 1.33061703e-01, 1.76751397e-01, 2.28328271e-01, 2.86842551e-01, 3.50440685e-01, 4.16363375e-01, 4.81080301e-01, 5.40567191e-01, 5.90702553e-01, 6.27733156e-01, 6.48736514e-01, 6.52001617e-01, 6.37259118e-01, 6.05718026e-01, 5.59901968e-01, 5.03315778e-01, 4.40003520e-01, 3.74075109e-01, 3.09277644e-01, 2.48671091e-01, 1.94441573e-01, 1.47856359e-01, 1.09339717e-01, 7.86326544e-02, 5.49939587e-02, 3.74036587e-02, 2.47400312e-02, 1.59137839e-02, 9.95482716e-03, 6.05593279e-03, 3.58274109e-03, 2.06127938e-03, 1.15330811e-03, 6.27539245e-04, 3.32065295e-04, 1.70880751e-04, 8.55164871e-05, 4.16191893e-05, 1.96981045e-05, 9.06655522e-06, 4.05832890e-06, 1.76660407e-06, 7.47856488e-07, 3.07882044e-07, 1.23264356e-07], } + { name: "PMTCHARGE", index: "r11780_hqe", valid_begin: [0,0], valid_end: [0,0], -//changed to SPE and measured charge distribution by Liz Kneale, Sheffield -charge: [0., 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1., 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2., 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3., 3.1, 3.2, 3.3, 3.4], +charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, + 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, + 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, + 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, + 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, + 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, + 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, + 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, + 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, + 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, + 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, + 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, + 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, + 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, + 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, + 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, + 2.92424242, 2.94949495, 2.97474747, 3. ] //this will be integrated and normalized -//values based on a single gaussian fit to measured charge distribution of a single R11780-HQE PMT -charge_prob: [0.062473519501305849, 0.10580683855723105, 0.16952955526783417, 0.25697508996263363, 0.36851107998605892, 0.49994703058592971, 0.64166943926835596, 0.77913486289136547, 0.89500989938776421, 0.97265082552566851, 1.0, 0.97265082552566851, 0.89500989938776387, 0.77913486289136524, 0.64166943926835562, 0.49994703058592971, 0.36851107998605886, 0.25697508996263341, 0.16952955526783417, 0.10580683855723096, 0.062473519501305849, 0.034897324137191571, 0.018441753005461799, 0.0092198996538797665, 0.0043607792959048357, 0.0019512635829612289, 0.00082600312595607723, 0.00033079684742973767, 0.0001253299748513901, 4.4922349516426734e-05, 1.5232945630621361e-05, 4.886740090234621e-06, 1.4830934242435651e-06, 4.2582553151499834e-07, 1.1566682231566402e-07], -//charge_prob: [0.603378, 0.849476, 1.16968, 1.57519, 2.0747, 2.67257, 3.3671, 4.14893, 5., 5.89327, 6.79355, 7.65931, 8.4457, 9.10825, 9.60699, 9.91044, 9.99889, 9.86651, 9.52201, 8.98767, 8.29695, 7.49105, 6.61486, 5.71283, 4.82542, 3.98632, 3.22079, 2.54511, 1.96699, 1.4868, 1.09914, 0.794714, 0.561979, 0.388671, 0.262904, 0.173927, 0.112535, 0.0712136, 0.0440748, 0.0266791, 0.0157945, 0.00914521, 0.00517886, 0.00286832, 0.00155373, 0.000823142, 0.000426509, 0.00021614, 0.000107126, 0.0000519286, 0.0000246191], - - -//units of pC here, implementers can choose their own units -charge: [0., 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1., 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2., 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3., 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 4., 4.1, 4.2, 4.3, 4.4, 4.5, 4.6, 4.7, 4.8, 4.9, 5.], - -//this will be integrated and normalized -//values based on a single gaussian fit to measured charge distribution of a single R11780-HQE PMT -charge_prob: [0.603378, 0.849476, 1.16968, 1.57519, 2.0747, 2.67257, 3.3671, 4.14893, 5., 5.89327, 6.79355, 7.65931, 8.4457, 9.10825, 9.60699, 9.91044, 9.99889, 9.86651, 9.52201, 8.98767, 8.29695, 7.49105, 6.61486, 5.71283, 4.82542, 3.98632, 3.22079, 2.54511, 1.96699, 1.4868, 1.09914, 0.794714, 0.561979, 0.388671, 0.262904, 0.173927, 0.112535, 0.0712136, 0.0440748, 0.0266791, 0.0157945, 0.00914521, 0.00517886, 0.00286832, 0.00155373, 0.000823142, 0.000426509, 0.00021614, 0.000107126, 0.0000519286, 0.0000246191], +charge_prob: [0.00621842, 0.00626782, 0.00633023, 0.00636348, 0.00643508, 0.00654461, + 0.00663966, 0.00682862, 0.00696415, 0.00711202, 0.00720716, 0.00745911, + 0.00774562, 0.00788369, 0.00813935, 0.00847894, 0.00881205, 0.00912665, + 0.00939725, 0.00976754, 0.0101307, 0.01039918, 0.01074784, 0.01116237, + 0.01156886, 0.01197924, 0.01239605, 0.01283205, 0.01314461, 0.01334743, + 0.01381274, 0.01430505, 0.01452392, 0.01492992, 0.0153288, 0.01557032, + 0.01579155, 0.01598711, 0.01632314, 0.01635583, 0.0164116, 0.01661396, + 0.01679131, 0.01683015, 0.01669429, 0.01665522, 0.01653037, 0.01649957, + 0.01645751, 0.01630648, 0.01602491, 0.0156321, 0.01536269, 0.01509085, + 0.01473546, 0.01443225, 0.0140423, 0.01351646, 0.01310645, 0.01290644, + 0.01260849, 0.01230476, 0.01196536, 0.01138159, 0.01086337, 0.01048188, + 0.01019447, 0.0098443, 0.00934939, 0.00895138, 0.00865846, 0.00836718, + 0.00795726, 0.00758876, 0.00735099, 0.00707127, 0.00683807, 0.00655711, + 0.00623136, 0.00592978, 0.00571036, 0.00557843, 0.00546826, 0.0052893, + 0.00505555, 0.00483473, 0.00466228, 0.00446451, 0.00434161, 0.00427337, + 0.00414512, 0.00405795, 0.00404466, 0.00391914, 0.00380067, 0.00378121, + 0.00377796, 0.00378218, 0.00376937, 0.00374959] } { @@ -128,18 +150,140 @@ charge_prob: [259.22322874793593, 269.3602291533824, 279.7736994345442, 290.4652 } +{ +name: "PMTCHARGE", +index: "r7081_hqe", +valid_begin: [0,0], +valid_end: [0,0], + +//units of pC here, implementers can choose their own units +charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, + 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, + 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, + 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, + 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, + 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, + 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, + 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, + 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, + 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, + 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, + 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, + 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, + 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, + 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, + 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, + 2.92424242, 2.94949495, 2.97474747, 3. ] + +//this will be integrated and normalized +charge_prob: [0.00580045, 0.00583587, 0.00585387, 0.00615181, 0.00637483, 0.00642523, + 0.00662265, 0.00680835, 0.00696354, 0.00721468, 0.00759425, 0.0077203, + 0.0078738, 0.00813155, 0.00837635, 0.0083985, 0.00891243, 0.00958104, + 0.01011203, 0.01034343, 0.01039566, 0.01054013, 0.01085902, 0.01135911, + 0.01177795, 0.01221235, 0.01282779, 0.01309577, 0.01343094, 0.01397533, + 0.01444747, 0.01480271, 0.01521713, 0.0158622, 0.01629198, 0.01659223, + 0.01670222, 0.01658009, 0.0166302, 0.01696051, 0.01722572, 0.01720954, + 0.01740521, 0.01748668, 0.01759095, 0.01759745, 0.01770436, 0.01744703, + 0.01693146, 0.01695377, 0.01688188, 0.01665152, 0.01590932, 0.01539705, + 0.0150728, 0.0151195, 0.01446445, 0.01398924, 0.01361354, 0.01294235, + 0.01251036, 0.01208333, 0.01165299, 0.01133965, 0.01094171, 0.01037915, + 0.00997001, 0.0095395, 0.0090157, 0.00834152, 0.00802997, 0.00771824, + 0.00729936, 0.00693989, 0.00652396, 0.00620399, 0.00583994, 0.00551942, + 0.00542664, 0.00530136, 0.00506786, 0.00470434, 0.00455672, 0.00436312, + 0.00409068, 0.0039843, 0.00393992, 0.00383339, 0.00367668, 0.0036952, + 0.00369785, 0.00353111, 0.00336002, 0.00326149, 0.00311656, 0.00300538, + 0.00311622, 0.00319102, 0.00305472, 0.00292717] +} + +{ +name: "PMTCHARGE", +index: "r11780_hqe_rev", +valid_begin: [0,0], +valid_end: [0,0], +//units of pC here, implementers can choose their own units +charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, + 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, + 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, + 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, + 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, + 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, + 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, + 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, + 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, + 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, + 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, + 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, + 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, + 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, + 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, + 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, + 2.92424242, 2.94949495, 2.97474747, 3. ] + +//this will be integrated and normalized +charge_prob: [0.00621842, 0.00626782, 0.00633023, 0.00636348, 0.00643508, 0.00654461, + 0.00663966, 0.00682862, 0.00696415, 0.00711202, 0.00720716, 0.00745911, + 0.00774562, 0.00788369, 0.00813935, 0.00847894, 0.00881205, 0.00912665, + 0.00939725, 0.00976754, 0.0101307, 0.01039918, 0.01074784, 0.01116237, + 0.01156886, 0.01197924, 0.01239605, 0.01283205, 0.01314461, 0.01334743, + 0.01381274, 0.01430505, 0.01452392, 0.01492992, 0.0153288, 0.01557032, + 0.01579155, 0.01598711, 0.01632314, 0.01635583, 0.0164116, 0.01661396, + 0.01679131, 0.01683015, 0.01669429, 0.01665522, 0.01653037, 0.01649957, + 0.01645751, 0.01630648, 0.01602491, 0.0156321, 0.01536269, 0.01509085, + 0.01473546, 0.01443225, 0.0140423, 0.01351646, 0.01310645, 0.01290644, + 0.01260849, 0.01230476, 0.01196536, 0.01138159, 0.01086337, 0.01048188, + 0.01019447, 0.0098443, 0.00934939, 0.00895138, 0.00865846, 0.00836718, + 0.00795726, 0.00758876, 0.00735099, 0.00707127, 0.00683807, 0.00655711, + 0.00623136, 0.00592978, 0.00571036, 0.00557843, 0.00546826, 0.0052893, + 0.00505555, 0.00483473, 0.00466228, 0.00446451, 0.00434161, 0.00427337, + 0.00414512, 0.00405795, 0.00404466, 0.00391914, 0.00380067, 0.00378121, + 0.00377796, 0.00378218, 0.00376937, 0.00374959] + +} { name: "PMTCHARGE", -index: "r7081_hqe", +index: "r14688", valid_begin: [0,0], valid_end: [0,0], //units of pC here, implementers can choose their own units -charge: [0.0, 0.05, 0.1, 0.15, 0.2, 0.25, 0.3, 0.35, 0.4, 0.45, 0.5, 0.55, 0.6, 0.65, 0.7, 0.75, 0.8, 0.85, 0.9, 0.95, 1.0, 1.05, 1.1, 1.15, 1.2, 1.25, 1.3, 1.35, 1.4, 1.45, 1.5, 1.55, 1.6, 1.65, 1.7, 1.75, 1.8, 1.85, 1.9, 1.95, 2.0, 2.05, 2.1, 2.15, 2.2, 2.25, 2.30, 2.35, 2.40, 2.45, 2.5, 2.55, 2.6, 2.65, 2.7, 2.75, 2.80, 2.85, 2.90, 2.95, 3.0, 3.05, 3.1, 3.15, 3.2, 3.25, 3.30, 3.35, 3.40, 3.45, 3.5, 3.55, 3.6, 3.65, 3.7, 3.75, 3.80, 3.85, 3.90, 3.95, 4.0, 4.05, 4.10, 4.15, 4.2, 4.25, 4.3, 4.35, 4.4, 4.45, 4.5, 4.55, 4.60, 4.65, 4.7, 4.75, 4.8, 4.85, 4.9, 4.95, 5.0, 5.05, 5.10, 5.15, 5.2, 5.25, 5.3, 5.35, 5.4, 5.45, 5.5, 5.55, 5.60, 5.65, 5.7, 5.75, 5.8, 5.85, 5.9, 5.95, 6.0, 6.05, 6.10, 6.15, 6.2, 6.25, 6.3, 6.35, 6.4, 6.45, 6.5, 6.55, 6.60, 6.65, 6.7, 6.75, 6.8, 6.85, 6.9, 6.95, 7.0, 7.05, 7.10, 7.15, 7.2, 7.25, 7.3, 7.35, 7.4, 7.45, 7.5, 7.55, 7.60, 7.65, 7.7, 7.75, 7.8, 7.85, 7.9, 7.95, 8.0, 8.05, 8.1, 8.15, 8.2, 8.25, 8.3, 8.35, 8.4, 8.45, 8.5, 8.55, 8.6, 8.65, 8.7, 8.75, 8.8, 8.85, 8.9, 8.95, 9.0, 9.05, 9.1, 9.15, 9.2, 9.25, 9.3, 9.35, 9.4, 9.45, 9.5, 9.55, 9.6, 9.65, 9.7, 9.75, 9.8, 9.85, 9.9, 9.95, 10.0, 10.05, 10.1, 10.15, 10.2, 10.25, 10.3, 10.35, 10.4, 10.45, 10.5, 10.55, 10.6, 10.65, 10.7, 10.75, 10.8, 10.85, 10.9, 10.95, 11.0, 11.05, 11.1, 11.15, 11.2, 11.25, 11.3, 11.35, 11.4, 11.45, 11.5, 11.55, 11.6, 11.65, 11.7, 11.75, 11.8, 11.85, 11.9, 11.95, 12.0, 12.05, 12.1, 12.15, 12.2, 12.25, 12.3, 12.35, 12.4, 12.45, 12.5, 12.55, 12.6, 12.65, 12.7, 12.75, 12.8, 12.85, 12.9, 12.95, 13.0, 13.05, 13.1, 13.15, 13.2, 13.25, 13.3, 13.35, 13.4, 13.45, 13.5, 13.55, 13.6, 13.65, 13.7, 13.75, 13.8, 13.85, 13.9, 13.95, 14.0, 14.05, 14.1, 14.15, 14.2, 14.25, 14.3, 14.35, 14.4, 14.45, 14.5, 14.55, 14.6, 14.65, 14.7, 14.75, 14.8, 14.85, 14.9, 14.95, 15.0], +charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, + 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, + 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, + 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, + 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, + 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, + 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, + 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, + 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, + 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, + 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, + 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, + 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, + 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, + 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, + 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, + 2.92424242, 2.94949495, 2.97474747, 3. ] //this will be integrated and normalized -charge_prob: [259.22322874793593, 269.3602291533824, 279.7736994345442, 290.465230608356, 301.4361105612265, 312.68731021739615, 324.21946987371103, 336.0328857428855, 348.12749674826506, 360.5028716139265, 373.1581962946647, 386.09226179098096, 399.30345239463156, 412.7897344105919, 426.54864540143507, 440.5772840001101, 454.87230033694533, 469.42988712635514, 484.24577145823037, 499.3152073383134, 514.6329690210011, 530.1933451769877, 545.9901339369458, 562.0166388510506, 578.265665802571, 594.7295209120024, 611.4000094662749, 628.2684359054574, 645.3256048970973, 662.5618235258744, 679.966904623627, 697.5301712620295, 715.2404624272672, 733.086139892972, 751.0550963044725, 769.134764484061, 787.3121279635209, 805.5737327465857, 823.9057003003329, 842.293741770762, 860.7231734139868, 879.1789332305767, 897.6455987866636, 916.1074062014706, 934.5482702769311, 952.9518057411036, 971.3013495731187, 989.5799843734593, 1007.7705627394976, 1025.8557326023765, 1043.8179634775918, 1061.6395735779652, 1079.3027577341675, 1096.7896160645337, 1114.082183332635, 1131.162458927961, 1148.0124374021182, 1164.6141394901874, 1180.9496435443343, 1197.0011173044054, 1212.7508499281314, 1228.1812842016686, 1243.2750488495692, 1258.014990861893, 1272.3842077550516, 1286.366079682143, 1299.9443013079556, 1313.1029133635614, 1325.8263337954197, 1338.0993884242182, 1349.9073410292913, 1361.2359227753393, 1372.0713608993722, 1382.4004065772897, 1392.2103618912797, 1401.4891058212884, 1410.225119186152, 1418.4075084625995, 1426.026028413225, 1433.0711034576527, 1439.5338477245157, 1445.4060837254822, 1450.6803595964032, 1455.3499648547013, 1459.4089446263647, 1462.8521123003263, 1465.6750605725833, 1467.8741708471453, 1469.4466209657335, 1470.3903912431256, 1470.7042687900753, 1470.3878501108543, 1469.4415419676318, 1467.8665605090982, 1465.6649286659474, 1462.839471821021, 1459.3938117670962, 1455.332358970394, 1450.660303162948, 1445.3836022919234, 1439.5089698588165, 1433.0438606862035, 1425.9964551542723, 1418.3756419537922, 1410.1909994064188, 1401.4527754072758, 1392.1718660485938, 1382.3597929868035, 1372.0286796188664, 1361.1912261367618, 1349.8606835319322, 1338.0508266241013, 1325.7759261912306, 1313.0507202794245, 1299.8903847733977, 1286.3105033095721, 1272.3270366150873, 1257.9562913568943, 1243.2148885856975, 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373.10660838372604, 360.4524103247848, 348.07816614819916, 335.9846883310765, 324.1724066311842, 312.64138065842303, 301.3913127860047, 290.4215613567936, 279.73115414096753, 269.3188020020009, 259.18291272889377, 249.32160499363695, 239.73272239404886, 230.41384754334976, 221.36231616918323, 212.57523118617164, 204.04947670757238, 195.7817319631254, 187.76848509174613, 180.00604677935243, 172.49056371375204, 165.21803183020546, 158.18430932298048, 151.3851293999171, 144.8161127587504, 138.47277976565252, 132.35056231815838, 126.4448153763464, 120.75082814781112, 115.26383491362196, 109.9790254840849, 104.89155527470142, 99.9965549942791, 95.28913993863982, 90.76441888483532, 86.41750258218651, 82.24351183781, 78.23758519560145, 74.39488620887553, 70.71061030804805, 67.17999126586157, 63.7983072637071, 60.56088656359234, 57.4631127912269, 54.50042983656182, 51.66834637891767, 48.96244004456607, 46.37836120530433, 43.91183642716399, 41.5586715789432, 39.31475461073451, 37.17605801304335, 35.138640967461825, 33.19865120016916, 31.35232654978845, 29.59599626133304, 27.926082018126866, 26.339098723691784, 24.83165504565138, 23.4004537337183, 22.042291723807786, 20.754060040253822, 19.532743508007815, 18.375420286562957, 17.27926123718417, 16.24152913482995, 15.259577735930103, 14.33085071294167, 13.452880466336923, 12.623286824393157, 11.839775640851176, 11.100137300190472, 10.40224513994044, 9.744053799103332, 9.123597501415679, 8.538988281816993, 7.988414164130952, 7.4701372975992735, 6.982492059538598, 6.523883131022615, 6.092783552123542, 5.687732762880617, 5.307334635801825, 4.950255505346256, 4.615222199482935, 4.30102007807604, 4.006491082507826, 3.7305318006210997, 3.472091550740761, 3.230170488222998, 3.003817737678138, 2.792129553721662, 2.5942475128275397, 2.409356738587439, 2.2366841624216756, 2.0754968215402876, 1.9251001957172262, 1.7848365842169764, 1.6540835240003176, 1.532252250135645, 1.4187861991528607, 1.3131595558989797, 1.2148758442881487, 1.1234665621827666, 1.038489860497743, 0.9595292664853007, 0.886192451033521, 0.8181100396975343, 0.7549344670772911, 0.6963388740605315, 0.6420160473627279, 0.591677400717707, 0.5450519970027389, 0.5018856105195437, 0.4619398285980534, 0.4249911916419257, 0.390830370693754, 0.3592613815631439, 0.330100834531905, 0.30317721862730496, 0.2783302194362064, 0.25541006941956595, 0.23427692967803732, 0.21480030211471682, 0.1968584709403378, 0.18033797246891542, 0.16513309215782168, 0.15114538785518192, 0.1382832382290111, 0.12646141536650352, 0.11560068054796357], +charge_prob: [0.00404797, 0.00409813, 0.00420497, 0.00433134, 0.00442419, 0.00457036, + 0.00475225, 0.00489623, 0.00504698, 0.00520678, 0.00538004, 0.00558134, + 0.00579648, 0.00602358, 0.00627702, 0.00655186, 0.00690595, 0.00725319, + 0.00760378, 0.00803784, 0.00852465, 0.0090098, 0.00955719, 0.01011441, + 0.01070746, 0.01141554, 0.01201647, 0.01271394, 0.01341548, 0.01422644, + 0.01491398, 0.01573887, 0.01646723, 0.0171682, 0.01790653, 0.0185873, + 0.01919076, 0.01992776, 0.02040372, 0.02082656, 0.02113557, 0.02144401, + 0.02158423, 0.02172909, 0.02174297, 0.0216441, 0.02150061, 0.0212557, + 0.02085128, 0.02036733, 0.0199064, 0.01934609, 0.01875889, 0.01807333, + 0.01730367, 0.01659073, 0.01577748, 0.01500998, 0.01422533, 0.01351052, + 0.01267201, 0.01189517, 0.01121362, 0.01050045, 0.00977259, 0.00915459, + 0.00856919, 0.00798707, 0.00747225, 0.00694335, 0.00647908, 0.0061025, + 0.00575862, 0.00538446, 0.00503128, 0.00479022, 0.00455177, 0.00433935, + 0.00411922, 0.00401963, 0.00382772, 0.00374832, 0.00359177, 0.00353158, + 0.00344877, 0.00338301, 0.00335415, 0.00332084, 0.00327416, 0.00326635, + 0.00326276, 0.00325851, 0.00326608, 0.00324824, 0.00326045, 0.00333577, + 0.00332301, 0.00332905, 0.00331982, 0.00331334] + } From a4a0213b6894ce730eacd5bf73fb6a3ee65df2cf Mon Sep 17 00:00:00 2001 From: Eliot Keener Date: Mon, 3 Jun 2024 16:23:55 -0400 Subject: [PATCH 005/103] Added extrapolation for PMT charges from Darkbox Data --- ratdb/PMTCHARGE.ratdb | 151 ++++-------------------------------------- 1 file changed, 14 insertions(+), 137 deletions(-) diff --git a/ratdb/PMTCHARGE.ratdb b/ratdb/PMTCHARGE.ratdb index 4af2123e..1464e05f 100644 --- a/ratdb/PMTCHARGE.ratdb +++ b/ratdb/PMTCHARGE.ratdb @@ -20,48 +20,17 @@ charge:[0., 0.10204082, 0.20408163, 0.30612245, 0.40816327, 0.51020408,0 charge_prob:[2.11743463e-02, 3.23358673e-02, 4.80226445e-02, 6.93577003e-02, 9.74160134e-02, 1.33061703e-01, 1.76751397e-01, 2.28328271e-01, 2.86842551e-01, 3.50440685e-01, 4.16363375e-01, 4.81080301e-01, 5.40567191e-01, 5.90702553e-01, 6.27733156e-01, 6.48736514e-01, 6.52001617e-01, 6.37259118e-01, 6.05718026e-01, 5.59901968e-01, 5.03315778e-01, 4.40003520e-01, 3.74075109e-01, 3.09277644e-01, 2.48671091e-01, 1.94441573e-01, 1.47856359e-01, 1.09339717e-01, 7.86326544e-02, 5.49939587e-02, 3.74036587e-02, 2.47400312e-02, 1.59137839e-02, 9.95482716e-03, 6.05593279e-03, 3.58274109e-03, 2.06127938e-03, 1.15330811e-03, 6.27539245e-04, 3.32065295e-04, 1.70880751e-04, 8.55164871e-05, 4.16191893e-05, 1.96981045e-05, 9.06655522e-06, 4.05832890e-06, 1.76660407e-06, 7.47856488e-07, 3.07882044e-07, 1.23264356e-07], } +//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. { name: "PMTCHARGE", index: "r11780_hqe", valid_begin: [0,0], valid_end: [0,0], -charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, - 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, - 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, - 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, - 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, - 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, - 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, - 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, - 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, - 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, - 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, - 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, - 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, - 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, - 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, - 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, - 2.92424242, 2.94949495, 2.97474747, 3. ] +charge: [0.0, 0.0076012651770227535, 0.015202530354045507, 0.02280379553106826, 0.030405060708091014, 0.03800632588511377, 0.04560759106213652, 0.053208856239159275, 0.06081012141618203, 0.06841138659320478, 0.07601265177022754, 0.08361391694725029, 0.09121518212427304, 0.0988164473012958, 0.10641771247831855, 0.1140189776553413, 0.12162024283236406, 0.1292215080093868, 0.13682277318640956, 0.14442403836343232, 0.15202530354045507, 0.15962656871747782, 0.16722783389450058, 0.17482909907152333, 0.18243036424854608, 0.19003162942556884, 0.1976328946025916, 0.20523415977961434, 0.2128354249566371, 0.22043669013365985, 0.2280379553106826, 0.23563922048770536, 0.2432404856647281, 0.25084175084175087, 0.2584430160187736, 0.2660442811957964, 0.2736455463728191, 0.2812468115498419, 0.28884807672686463, 0.2964493419038874, 0.30405060708091014, 0.3116518722579329, 0.31925313743495565, 0.3268544026119784, 0.33445566778900115, 0.3420569329660239, 0.34965819814304666, 0.3572594633200694, 0.36486072849709217, 0.3724619936741149, 0.3800632588511377, 0.38766452402816043, 0.3952657892051832, 0.40286705438220594, 0.4104683195592287, 0.41806958473625144, 0.4256708499132742, 0.43327211509029695, 0.4408733802673197, 0.44847464544434246, 0.4560759106213652, 0.46367717579838796, 0.4712784409754107, 0.47887970615243347, 0.4864809713294562, 0.494082236506479, 0.5016835016835017, 0.5092847668605245, 0.5168860320375472, 0.52448729721457, 0.5320885623915927, 0.5396898275686155, 0.5472910927456383, 0.554892357922661, 0.5624936230996838, 0.5700948882767065, 0.5776961534537293, 0.585297418630752, 0.5928986838077748, 0.6004999489847975, 0.6081012141618203, 0.615702479338843, 0.6233037445158658, 0.6309050096928885, 0.6385062748699113, 0.646107540046934, 0.6537088052239568, 0.6613100704009796, 0.6689113355780023, 0.6765126007550251, 0.6841138659320478, 0.6917151311090706, 0.6993163962860933, 0.7069176614631161, 0.7145189266401388, 0.7221201918171616, 0.7297214569941843, 0.7373227221712071, 0.7449239873482298, 0.7525252525252526, 0.7525252525252526, 0.7777777777777778, 0.803030303030303, 0.8282828282828283, 0.8535353535353536, 0.8787878787878788, 0.904040404040404, 0.9292929292929293, 0.9545454545454546, 0.9797979797979798, 1.0050505050505052, 1.0303030303030303, 1.0555555555555556, 1.0808080808080809, 1.106060606060606, 1.1313131313131313, 1.1565656565656566, 1.1818181818181817, 1.2070707070707072, 1.2323232323232323, 1.2575757575757576, 1.2828282828282829, 1.308080808080808, 1.3333333333333335, 1.3585858585858586, 1.3838383838383839, 1.4090909090909092, 1.4343434343434343, 1.4595959595959596, 1.4848484848484849, 1.5101010101010102, 1.5353535353535352, 1.5606060606060606, 1.5858585858585859, 1.6111111111111112, 1.6363636363636362, 1.6616161616161615, 1.6868686868686869, 1.7121212121212122, 1.7373737373737375, 1.7626262626262625, 1.7878787878787878, 1.8131313131313131, 1.8383838383838385, 1.8636363636363635, 1.8888888888888888, 1.9141414141414141, 1.9393939393939394, 1.9646464646464645, 1.9898989898989898, 2.0, 2.0303030303030303, 2.0606060606060606, 2.090909090909091, 2.121212121212121, 2.1515151515151514, 2.1818181818181817, 2.212121212121212, 2.242424242424242, 2.2727272727272725, 2.303030303030303, 2.3333333333333335, 2.3636363636363638, 2.393939393939394, 2.4242424242424243, 2.4545454545454546, 2.484848484848485, 2.515151515151515, 2.5454545454545454, 2.5757575757575757, 2.606060606060606, 2.6363636363636362, 2.666666666666667, 2.6969696969696972, 2.7272727272727275, 2.757575757575758, 2.787878787878788, 2.8181818181818183, 2.8484848484848486, 2.878787878787879, 2.909090909090909, 2.9393939393939394, 2.9696969696969697, 3.0, 3.0303030303030303, 3.0606060606060606, 3.090909090909091, 3.121212121212121, 3.1515151515151514, 3.1818181818181817, 3.212121212121212, 3.242424242424242, 3.2727272727272725, 3.3030303030303028, 3.3333333333333335, 3.3636363636363638, 3.393939393939394, 3.4242424242424243, 3.4545454545454546, 3.484848484848485, 3.515151515151515, 3.5454545454545454, 3.5757575757575757, 3.6060606060606064, 3.6363636363636367, 3.666666666666667, 3.6969696969696972, 3.7272727272727275, 3.757575757575758, 3.787878787878788, 3.8181818181818183, 3.8484848484848486, 3.878787878787879, 3.909090909090909, 3.9393939393939394, 3.9696969696969697, 4.0, 4.03030303030303, 4.0606060606060606, 4.090909090909091, 4.121212121212121, 4.151515151515151, 4.181818181818182, 4.212121212121213, 4.242424242424242, 4.272727272727273, 4.303030303030303, 4.333333333333334, 4.363636363636363, 4.3939393939393945, 4.424242424242424, 4.454545454545455, 4.484848484848484, 4.515151515151516, 4.545454545454545, 4.575757575757576, 4.6060606060606055, 4.636363636363637, 4.666666666666667, 4.696969696969697, 4.7272727272727275, 4.757575757575758, 4.787878787878788, 4.818181818181818, 4.848484848484849, 4.878787878787879, 4.909090909090909, 4.9393939393939394, 4.96969696969697, 5.0] //this will be integrated and normalized -charge_prob: [0.00621842, 0.00626782, 0.00633023, 0.00636348, 0.00643508, 0.00654461, - 0.00663966, 0.00682862, 0.00696415, 0.00711202, 0.00720716, 0.00745911, - 0.00774562, 0.00788369, 0.00813935, 0.00847894, 0.00881205, 0.00912665, - 0.00939725, 0.00976754, 0.0101307, 0.01039918, 0.01074784, 0.01116237, - 0.01156886, 0.01197924, 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0.001986630235123431, 0.001894659882758081, 0.0018069472657098811, 0.0017232952736104968, 0.0016435159212471956, 0.0015674299261169648, 0.0014948663055376098, 0.0014256619924104409, 0.0013596614687711092, 0.0012967164163050666, 0.0012366853830423012, 0.001179433465482307, 0.001124832005434985, 0.0010727583008961765, 0.0010230953303081208, 0.0009757314895851712, 0.0009305603413138168, 0.0008874803755634039, 0.0008463947817700378, 0.0008072112311810438, 0.0007698416693710798, 0.0007342021183636474, 0.0007002124879133201, 0.0006677963955245897, 0.0006368809948028789, 0.0006073968117519871, 0.0005792775886500843, 0.0005524601351534156, 0.0005268841862931025, 0.0005024922670459374, 0.0004792295631748227, 0.00045704379804861, 0.0004358851151645166, 0.0004157059661091309, 0.00039646100370622036, 0.00037810698011122765, 0.00036060264962344186, 0.0003439086759974506, 0.0003279875440455746, 0.00031280347533263513, 0.00029832234777360495, 0.00028451161895345656, 0.0002713402529968922, 0.0002587786508236139, 0.0002467985836323986, 0.00023537312946451198, 0.00022447661270388704, 0.00021408454637813037, 0.0002041735771306749, 0.00019472143274043555, 0.00018570687207101558, 0.00017710963733700555, 0.00016891040858008874, 0.00016109076025266837, 0.0001536331198114314, 0.00014652072822781748, 0.00013973760232663369, 0.00013326849886819813, 0.00012709888029328092, 0.00012121488205387618, 0.00011560328145638165, 0.00011025146794717389, 0.00010514741477380172, 0.00010027965195811534, 9.56372405205941e-05, 9.120974789795095e-05, 8.698722449876979e-05, 8.296018134449172e-05, 7.911956874550337e-05] } { @@ -87,6 +56,7 @@ charge: [0., 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1., 1.1, 1.2, 1.3, 1.4 charge_prob: [0.603378, 0.849476, 1.16968, 1.57519, 2.0747, 2.67257, 3.3671, 4.14893, 5., 5.89327, 6.79355, 7.65931, 8.4457, 9.10825, 9.60699, 9.91044, 9.99889, 9.86651, 9.52201, 8.98767, 8.29695, 7.49105, 6.61486, 5.71283, 4.82542, 3.98632, 3.22079, 2.54511, 1.96699, 1.4868, 1.09914, 0.794714, 0.561979, 0.388671, 0.262904, 0.173927, 0.112535, 0.0712136, 0.0440748, 0.0266791, 0.0157945, 0.00914521, 0.00517886, 0.00286832, 0.00155373, 0.000823142, 0.000426509, 0.00021614, 0.000107126, 0.0000519286, 0.0000246191], } +//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. { name: "PMTCHARGE", index: "r7081", @@ -150,6 +120,7 @@ charge_prob: [259.22322874793593, 269.3602291533824, 279.7736994345442, 290.4652 } +//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. { name: "PMTCHARGE", index: "r7081_hqe", @@ -157,44 +128,13 @@ valid_begin: [0,0], valid_end: [0,0], //units of pC here, implementers can choose their own units -charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, - 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, - 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, - 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, - 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, - 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, - 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, - 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, - 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, - 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, - 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, - 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, - 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, - 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, - 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, - 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, - 2.92424242, 2.94949495, 2.97474747, 3. ] +charge: [0.0, 0.0076012651770227535, 0.015202530354045507, 0.02280379553106826, 0.030405060708091014, 0.03800632588511377, 0.04560759106213652, 0.053208856239159275, 0.06081012141618203, 0.06841138659320478, 0.07601265177022754, 0.08361391694725029, 0.09121518212427304, 0.0988164473012958, 0.10641771247831855, 0.1140189776553413, 0.12162024283236406, 0.1292215080093868, 0.13682277318640956, 0.14442403836343232, 0.15202530354045507, 0.15962656871747782, 0.16722783389450058, 0.17482909907152333, 0.18243036424854608, 0.19003162942556884, 0.1976328946025916, 0.20523415977961434, 0.2128354249566371, 0.22043669013365985, 0.2280379553106826, 0.23563922048770536, 0.2432404856647281, 0.25084175084175087, 0.2584430160187736, 0.2660442811957964, 0.2736455463728191, 0.2812468115498419, 0.28884807672686463, 0.2964493419038874, 0.30405060708091014, 0.3116518722579329, 0.31925313743495565, 0.3268544026119784, 0.33445566778900115, 0.3420569329660239, 0.34965819814304666, 0.3572594633200694, 0.36486072849709217, 0.3724619936741149, 0.3800632588511377, 0.38766452402816043, 0.3952657892051832, 0.40286705438220594, 0.4104683195592287, 0.41806958473625144, 0.4256708499132742, 0.43327211509029695, 0.4408733802673197, 0.44847464544434246, 0.4560759106213652, 0.46367717579838796, 0.4712784409754107, 0.47887970615243347, 0.4864809713294562, 0.494082236506479, 0.5016835016835017, 0.5092847668605245, 0.5168860320375472, 0.52448729721457, 0.5320885623915927, 0.5396898275686155, 0.5472910927456383, 0.554892357922661, 0.5624936230996838, 0.5700948882767065, 0.5776961534537293, 0.585297418630752, 0.5928986838077748, 0.6004999489847975, 0.6081012141618203, 0.615702479338843, 0.6233037445158658, 0.6309050096928885, 0.6385062748699113, 0.646107540046934, 0.6537088052239568, 0.6613100704009796, 0.6689113355780023, 0.6765126007550251, 0.6841138659320478, 0.6917151311090706, 0.6993163962860933, 0.7069176614631161, 0.7145189266401388, 0.7221201918171616, 0.7297214569941843, 0.7373227221712071, 0.7449239873482298, 0.7525252525252526, 0.7525252525252526, 0.7777777777777778, 0.803030303030303, 0.8282828282828283, 0.8535353535353536, 0.8787878787878788, 0.904040404040404, 0.9292929292929293, 0.9545454545454546, 0.9797979797979798, 1.0050505050505052, 1.0303030303030303, 1.0555555555555556, 1.0808080808080809, 1.106060606060606, 1.1313131313131313, 1.1565656565656566, 1.1818181818181817, 1.2070707070707072, 1.2323232323232323, 1.2575757575757576, 1.2828282828282829, 1.308080808080808, 1.3333333333333335, 1.3585858585858586, 1.3838383838383839, 1.4090909090909092, 1.4343434343434343, 1.4595959595959596, 1.4848484848484849, 1.5101010101010102, 1.5353535353535352, 1.5606060606060606, 1.5858585858585859, 1.6111111111111112, 1.6363636363636362, 1.6616161616161615, 1.6868686868686869, 1.7121212121212122, 1.7373737373737375, 1.7626262626262625, 1.7878787878787878, 1.8131313131313131, 1.8383838383838385, 1.8636363636363635, 1.8888888888888888, 1.9141414141414141, 1.9393939393939394, 1.9646464646464645, 1.9898989898989898, 2.0, 2.0303030303030303, 2.0606060606060606, 2.090909090909091, 2.121212121212121, 2.1515151515151514, 2.1818181818181817, 2.212121212121212, 2.242424242424242, 2.2727272727272725, 2.303030303030303, 2.3333333333333335, 2.3636363636363638, 2.393939393939394, 2.4242424242424243, 2.4545454545454546, 2.484848484848485, 2.515151515151515, 2.5454545454545454, 2.5757575757575757, 2.606060606060606, 2.6363636363636362, 2.666666666666667, 2.6969696969696972, 2.7272727272727275, 2.757575757575758, 2.787878787878788, 2.8181818181818183, 2.8484848484848486, 2.878787878787879, 2.909090909090909, 2.9393939393939394, 2.9696969696969697, 3.0, 3.0303030303030303, 3.0606060606060606, 3.090909090909091, 3.121212121212121, 3.1515151515151514, 3.1818181818181817, 3.212121212121212, 3.242424242424242, 3.2727272727272725, 3.3030303030303028, 3.3333333333333335, 3.3636363636363638, 3.393939393939394, 3.4242424242424243, 3.4545454545454546, 3.484848484848485, 3.515151515151515, 3.5454545454545454, 3.5757575757575757, 3.6060606060606064, 3.6363636363636367, 3.666666666666667, 3.6969696969696972, 3.7272727272727275, 3.757575757575758, 3.787878787878788, 3.8181818181818183, 3.8484848484848486, 3.878787878787879, 3.909090909090909, 3.9393939393939394, 3.9696969696969697, 4.0, 4.03030303030303, 4.0606060606060606, 4.090909090909091, 4.121212121212121, 4.151515151515151, 4.181818181818182, 4.212121212121213, 4.242424242424242, 4.272727272727273, 4.303030303030303, 4.333333333333334, 4.363636363636363, 4.3939393939393945, 4.424242424242424, 4.454545454545455, 4.484848484848484, 4.515151515151516, 4.545454545454545, 4.575757575757576, 4.6060606060606055, 4.636363636363637, 4.666666666666667, 4.696969696969697, 4.7272727272727275, 4.757575757575758, 4.787878787878788, 4.818181818181818, 4.848484848484849, 4.878787878787879, 4.909090909090909, 4.9393939393939394, 4.96969696969697, 5.0] //this will be integrated and normalized -charge_prob: [0.00580045, 0.00583587, 0.00585387, 0.00615181, 0.00637483, 0.00642523, - 0.00662265, 0.00680835, 0.00696354, 0.00721468, 0.00759425, 0.0077203, - 0.0078738, 0.00813155, 0.00837635, 0.0083985, 0.00891243, 0.00958104, - 0.01011203, 0.01034343, 0.01039566, 0.01054013, 0.01085902, 0.01135911, - 0.01177795, 0.01221235, 0.01282779, 0.01309577, 0.01343094, 0.01397533, - 0.01444747, 0.01480271, 0.01521713, 0.0158622, 0.01629198, 0.01659223, - 0.01670222, 0.01658009, 0.0166302, 0.01696051, 0.01722572, 0.01720954, - 0.01740521, 0.01748668, 0.01759095, 0.01759745, 0.01770436, 0.01744703, - 0.01693146, 0.01695377, 0.01688188, 0.01665152, 0.01590932, 0.01539705, - 0.0150728, 0.0151195, 0.01446445, 0.01398924, 0.01361354, 0.01294235, - 0.01251036, 0.01208333, 0.01165299, 0.01133965, 0.01094171, 0.01037915, - 0.00997001, 0.0095395, 0.0090157, 0.00834152, 0.00802997, 0.00771824, - 0.00729936, 0.00693989, 0.00652396, 0.00620399, 0.00583994, 0.00551942, - 0.00542664, 0.00530136, 0.00506786, 0.00470434, 0.00455672, 0.00436312, - 0.00409068, 0.0039843, 0.00393992, 0.00383339, 0.00367668, 0.0036952, - 0.00369785, 0.00353111, 0.00336002, 0.00326149, 0.00311656, 0.00300538, - 0.00311622, 0.00319102, 0.00305472, 0.00292717] +charge_prob: [0.002291031848236706, 0.002309928362209871, 0.002328980735317256, 0.0023481902530906673, 0.002367558211665022, 0.002387085917865808, 0.002406774689297254, 0.0024266258544312384, 0.0024466407526969234, 0.002466820734571132, 0.002487167161669469, 0.0025076814068381937, 0.002528364854246851, 0.0025492188994816678, 0.002570244949639716, 0.002591444423423856, 0.002612818751238459, 0.002634369375285927, 0.0026560977496639963, 0.002678005340463856, 0.0027000936258690694, 0.002722364096255309, 0.0027448182542909225, 0.00276745761503832, 0.0027902837060562, 0.0028132980675026216, 0.002836502252238926, 0.002859897825934507, 0.0028834863671724597, 0.002907269467556089, 0.0029312487318163, 0.0029554257779198794, 0.002979802237178662, 0.0030043797543596, 0.003029159987795746, 0.003054144609498141, 0.0030793353052686366, 0.0031047337748136374, 0.00313034173185879, 0.003156160904264611, 0.003182193034143074, 0.0032084398779751544, 0.0032349032067293484, 0.0032615848059811634, 0.0032884864760335994, 0.003315610032038619, 0.003342957304119626, 0.003370530137494949, 0.0033983303926023436, 0.003426359945224524, 0.0034546206866157263, 0.0034831145236293238, 0.0035118433788464834, 0.003540809190705892, 0.0035700139136345503, 0.0035994595181796413, 0.0036291479911414962, 0.0036590813357076433, 0.0036892615715879793, 0.0037196907351510385, 0.0037503708795613966, 0.003781304074918208, 0.0038124924083948776, 0.003843937984379893, 0.0038756429246188154, 0.00390760936835744, 0.00393983947248614, 0.003972335411685395, 0.004005099378572536, 0.004038133583849673, 0.004071440256452871, 0.004105021643702543, 0.0041388800114550775, 0.004173017644255733, 0.00420743684549278, 0.004242139937552916, 0.004277129261977972, 0.004312407179622898, 0.004347976070815065, 0.004383838335514868, 0.004419996393477663, 0.004456452684417037, 0.0044932096681694214, 0.004530269824860072, 0.004567635655070404, 0.004605309680006719, 0.004643294441670322, 0.004681592503029038, 0.004720206448190141, 0.004759138882574715, 0.004798392433093456, 0.004837969748323912, 0.004877873498689195, 0.004918106376638165, 0.004958671096827098, 0.004999570396302851, 0.005040807034687547, 0.005082383794364769, 0.005124303480667304, 0.005166568922066423, 0.005275478258488022, 0.005363040432294399, 0.005469668487468977, 0.005648724034003023, 0.005818775093573912, 0.005834166622910314, 0.006191174095602966, 0.00665563556557548, 0.007024499967244423, 0.00718524101036641, 0.007221528402336355, 0.0073218842173332485, 0.007543403455459367, 0.007890799294043162, 0.008181758718313444, 0.0084835194340525, 0.00891104315095185, 0.009097203116638346, 0.0093300374635228, 0.009708207697478153, 0.01003618750369461, 0.010282960728238425, 0.01057084062673234, 0.01101895479432452, 0.011317504621624312, 0.011526080125801072, 0.011602488206002938, 0.011517644235367792, 0.011552458540485987, 0.01178191095730326, 0.011966143545604008, 0.011954902297997004, 0.012090829836204825, 0.012147422203721267, 0.012219857237501278, 0.012224375242134886, 0.012298637623044183, 0.01211987881795394, 0.011761729524528619, 0.011777226827357646, 0.011727287959669937, 0.011567266307745813, 0.011051682606848244, 0.010695825402355145, 0.010470583472150201, 0.010503020565419144, 0.010047982491978942, 0.009717867862838311, 0.009456880024758068, 0.008990630404214838, 0.0092237349006366, 0.008713090569381321, 0.008230716525146663, 0.0077750476685487565, 0.007344605547222176, 0.006937993558868497, 0.006553892419873563, 0.0061910558847911865, 0.005848306702804711, 0.005524532798046958, 0.005218683661385205, 0.004929766941964207, 0.00465684522744811, 0.004399033002514642, 0.0041554937757330955, 0.003925437365504064, 0.0037081173362549617, 0.0035028285765728796, 0.003308905011416804, 0.003125717440986354, 0.0029526714992350054, 0.002789205725404134, 0.00263478974232074, 0.002488922535548266, 0.0023511308278070194, 0.002220967543389953, 0.0020980103575914135, 0.0019818603264424293, 0.0018721405923065627, 0.0017684951611365621, 0.0016705877474245258, 0.0015781006830979068, 0.001490733886821226, 0.001408203890359285, 0.0013302429188428585, 0.0012565980219526954, 0.0011870302532029178, 0.0011213138946609183, 0.0010592357245883084, 0.0010005943256267268, 0.000945199431283848, 0.0008928713085992402, 0.0008434401749870614, 0.0007967456473635079, 0.0007526362217716669, 0.0007109687818153681, 0.0006716081343071193, 0.0006344265706234976, 0.0005993034523447777, 0.0005661248198343766, 0.0005347830224881206, 0.0005051763694536458, 0.00047720879968667193, 0.0004507895702736149, 0.0004258329620092836, 0.0004022580012743782, 0.0003799881973104044, 0.00035895129403957447, 0.00033907903562444973, 0.00032030694500666924, 0.0003025741147062165, 0.00028582300920245254, 0.00026999927825573105, 0.00025505158056390024, 0.0002409314171815303, 0.00022759297416138685, 0.00021499297390758295, 0.00020309053475811822, 0.00019184703834120812, 0.0001812260042750304, 0.00017119297180434413, 0.00016171538798993946, 0.0001527625020881437, 0.00014430526577768757, 0.00013631623891021162, 0.0001287695004786097, 0.00012164056451434694, 0.00011490630064086352, 0.00010854485902530709, 0.00010253559948507976, 9.685902451919448e-05, 9.14967160471426e-05, 8.643127565002944e-05, 8.164626812007483e-05, 7.712616813532938e-05, 7.285630988658132e-05, 6.882283949302178e-05, 6.501267005226963e-05, 6.141343917892027e-05, 5.801346889384171e-05, 5.480172773408113e-05, 5.176779496044164e-05, 4.890182674659896e-05, 4.619452424005629e-05, 4.363710339130756e-05, 4.122126645331905e-05, 3.893917505885606e-05, 3.678342478830249e-05, 3.474702114545655e-05, 3.2823356863354284e-05] } +//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. { name: "PMTCHARGE", index: "r11780_hqe_rev", @@ -202,45 +142,13 @@ valid_begin: [0,0], valid_end: [0,0], //units of pC here, implementers can choose their own units -charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, - 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, - 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, - 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, - 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, - 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, - 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, - 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, - 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, - 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, - 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, - 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, - 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, - 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, - 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, - 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, - 2.92424242, 2.94949495, 2.97474747, 3. ] +charge: [0.0, 0.0076012651770227535, 0.015202530354045507, 0.02280379553106826, 0.030405060708091014, 0.03800632588511377, 0.04560759106213652, 0.053208856239159275, 0.06081012141618203, 0.06841138659320478, 0.07601265177022754, 0.08361391694725029, 0.09121518212427304, 0.0988164473012958, 0.10641771247831855, 0.1140189776553413, 0.12162024283236406, 0.1292215080093868, 0.13682277318640956, 0.14442403836343232, 0.15202530354045507, 0.15962656871747782, 0.16722783389450058, 0.17482909907152333, 0.18243036424854608, 0.19003162942556884, 0.1976328946025916, 0.20523415977961434, 0.2128354249566371, 0.22043669013365985, 0.2280379553106826, 0.23563922048770536, 0.2432404856647281, 0.25084175084175087, 0.2584430160187736, 0.2660442811957964, 0.2736455463728191, 0.2812468115498419, 0.28884807672686463, 0.2964493419038874, 0.30405060708091014, 0.3116518722579329, 0.31925313743495565, 0.3268544026119784, 0.33445566778900115, 0.3420569329660239, 0.34965819814304666, 0.3572594633200694, 0.36486072849709217, 0.3724619936741149, 0.3800632588511377, 0.38766452402816043, 0.3952657892051832, 0.40286705438220594, 0.4104683195592287, 0.41806958473625144, 0.4256708499132742, 0.43327211509029695, 0.4408733802673197, 0.44847464544434246, 0.4560759106213652, 0.46367717579838796, 0.4712784409754107, 0.47887970615243347, 0.4864809713294562, 0.494082236506479, 0.5016835016835017, 0.5092847668605245, 0.5168860320375472, 0.52448729721457, 0.5320885623915927, 0.5396898275686155, 0.5472910927456383, 0.554892357922661, 0.5624936230996838, 0.5700948882767065, 0.5776961534537293, 0.585297418630752, 0.5928986838077748, 0.6004999489847975, 0.6081012141618203, 0.615702479338843, 0.6233037445158658, 0.6309050096928885, 0.6385062748699113, 0.646107540046934, 0.6537088052239568, 0.6613100704009796, 0.6689113355780023, 0.6765126007550251, 0.6841138659320478, 0.6917151311090706, 0.6993163962860933, 0.7069176614631161, 0.7145189266401388, 0.7221201918171616, 0.7297214569941843, 0.7373227221712071, 0.7449239873482298, 0.7525252525252526, 0.7525252525252526, 0.7777777777777778, 0.803030303030303, 0.8282828282828283, 0.8535353535353536, 0.8787878787878788, 0.904040404040404, 0.9292929292929293, 0.9545454545454546, 0.9797979797979798, 1.0050505050505052, 1.0303030303030303, 1.0555555555555556, 1.0808080808080809, 1.106060606060606, 1.1313131313131313, 1.1565656565656566, 1.1818181818181817, 1.2070707070707072, 1.2323232323232323, 1.2575757575757576, 1.2828282828282829, 1.308080808080808, 1.3333333333333335, 1.3585858585858586, 1.3838383838383839, 1.4090909090909092, 1.4343434343434343, 1.4595959595959596, 1.4848484848484849, 1.5101010101010102, 1.5353535353535352, 1.5606060606060606, 1.5858585858585859, 1.6111111111111112, 1.6363636363636362, 1.6616161616161615, 1.6868686868686869, 1.7121212121212122, 1.7373737373737375, 1.7626262626262625, 1.7878787878787878, 1.8131313131313131, 1.8383838383838385, 1.8636363636363635, 1.8888888888888888, 1.9141414141414141, 1.9393939393939394, 1.9646464646464645, 1.9898989898989898, 2.0, 2.0303030303030303, 2.0606060606060606, 2.090909090909091, 2.121212121212121, 2.1515151515151514, 2.1818181818181817, 2.212121212121212, 2.242424242424242, 2.2727272727272725, 2.303030303030303, 2.3333333333333335, 2.3636363636363638, 2.393939393939394, 2.4242424242424243, 2.4545454545454546, 2.484848484848485, 2.515151515151515, 2.5454545454545454, 2.5757575757575757, 2.606060606060606, 2.6363636363636362, 2.666666666666667, 2.6969696969696972, 2.7272727272727275, 2.757575757575758, 2.787878787878788, 2.8181818181818183, 2.8484848484848486, 2.878787878787879, 2.909090909090909, 2.9393939393939394, 2.9696969696969697, 3.0, 3.0303030303030303, 3.0606060606060606, 3.090909090909091, 3.121212121212121, 3.1515151515151514, 3.1818181818181817, 3.212121212121212, 3.242424242424242, 3.2727272727272725, 3.3030303030303028, 3.3333333333333335, 3.3636363636363638, 3.393939393939394, 3.4242424242424243, 3.4545454545454546, 3.484848484848485, 3.515151515151515, 3.5454545454545454, 3.5757575757575757, 3.6060606060606064, 3.6363636363636367, 3.666666666666667, 3.6969696969696972, 3.7272727272727275, 3.757575757575758, 3.787878787878788, 3.8181818181818183, 3.8484848484848486, 3.878787878787879, 3.909090909090909, 3.9393939393939394, 3.9696969696969697, 4.0, 4.03030303030303, 4.0606060606060606, 4.090909090909091, 4.121212121212121, 4.151515151515151, 4.181818181818182, 4.212121212121213, 4.242424242424242, 4.272727272727273, 4.303030303030303, 4.333333333333334, 4.363636363636363, 4.3939393939393945, 4.424242424242424, 4.454545454545455, 4.484848484848484, 4.515151515151516, 4.545454545454545, 4.575757575757576, 4.6060606060606055, 4.636363636363637, 4.666666666666667, 4.696969696969697, 4.7272727272727275, 4.757575757575758, 4.787878787878788, 4.818181818181818, 4.848484848484849, 4.878787878787879, 4.909090909090909, 4.9393939393939394, 4.96969696969697, 5.0] //this will be integrated and normalized -charge_prob: [0.00621842, 0.00626782, 0.00633023, 0.00636348, 0.00643508, 0.00654461, - 0.00663966, 0.00682862, 0.00696415, 0.00711202, 0.00720716, 0.00745911, - 0.00774562, 0.00788369, 0.00813935, 0.00847894, 0.00881205, 0.00912665, - 0.00939725, 0.00976754, 0.0101307, 0.01039918, 0.01074784, 0.01116237, - 0.01156886, 0.01197924, 0.01239605, 0.01283205, 0.01314461, 0.01334743, - 0.01381274, 0.01430505, 0.01452392, 0.01492992, 0.0153288, 0.01557032, - 0.01579155, 0.01598711, 0.01632314, 0.01635583, 0.0164116, 0.01661396, - 0.01679131, 0.01683015, 0.01669429, 0.01665522, 0.01653037, 0.01649957, - 0.01645751, 0.01630648, 0.01602491, 0.0156321, 0.01536269, 0.01509085, - 0.01473546, 0.01443225, 0.0140423, 0.01351646, 0.01310645, 0.01290644, - 0.01260849, 0.01230476, 0.01196536, 0.01138159, 0.01086337, 0.01048188, - 0.01019447, 0.0098443, 0.00934939, 0.00895138, 0.00865846, 0.00836718, - 0.00795726, 0.00758876, 0.00735099, 0.00707127, 0.00683807, 0.00655711, - 0.00623136, 0.00592978, 0.00571036, 0.00557843, 0.00546826, 0.0052893, - 0.00505555, 0.00483473, 0.00466228, 0.00446451, 0.00434161, 0.00427337, - 0.00414512, 0.00405795, 0.00404466, 0.00391914, 0.00380067, 0.00378121, - 0.00377796, 0.00378218, 0.00376937, 0.00374959] - +charge_prob: [0.0029546296114625024, 0.00296862604979889, 0.0029826887909589353, 0.002996818149027145, 0.003011014439575883, 0.003025277979672414, 0.0030396090878859936, 0.003054008084294975, 0.0030684752904939624, 0.0030830110296009927, 0.003097615626264753, 0.0031122894066718284, 0.003127032698553991, 0.0031418458311955177, 0.003156729135440546, 0.0031716829437004584, 0.003186707589961314, 0.003201803409791304, 0.0032169707403482454, 0.0032322099203871127, 0.003247521290267605, 0.003262905191961746, 0.0032783619690615203, 0.0032938919667865525, 0.0033094955319918134, 0.0033251730131753665, 0.003340924760486154, 0.0033567511257318163, 0.0033726524623865464, 0.0033886291255989932, 0.0034046814722001823, 0.003420809860711493, 0.003437014651352663, 0.0034532962060498376, 0.003469654888443646, 0.003486091063897329, 0.0035026050995048985, 0.003519197364099332, 0.0035358682282608167, 0.0035526180643250223, 0.0035694472463914163, 0.003586356150331621, 0.0036033451537978095, 0.0036204146362311374, 0.0036375649788702204, 0.003654796564759647, 0.003672109778758533, 0.0036895050075491224, 0.003706982639645415, 0.0037245430654018505, 0.0037421866770220268, 0.0037599138685674546, 0.003777725035966363, 0.003795620577022542, 0.0038136008914242256, 0.0038316663807530177, 0.003849817448492866, 0.003868054500039068, 0.0038863779427073305, 0.0039047881857428596, 0.003923285640329512, 0.003941870719598966, 0.0039605438386399565, 0.003979305414507546, 0.003998155866232437, 0.004017095614830329, 0.0040361250833113255, 0.004055244696689379, 0.004074454881991787, 0.004093756068268723, 0.004113148686602826, 0.004132633170118827, 0.004152209953993217, 0.004171879475463976, 0.004191642173840328, 0.00421149849051256, 0.004231448868961882, 0.004251493754770321, 0.0042716335956306875, 0.004291868841356561, 0.0043121999438923446, 0.004332627357323358, 0.004353151537885979, 0.004373772943977827, 0.004394492036168014, 0.004415309277207415, 0.004436225132039021, 0.004457240067808307, 0.0044783545538736765, 0.004499569061816939, 0.004520884065453846, 0.0045423000408446705, 0.004563817466304838, 0.004585436822415617, 0.004607158592034847, 0.004628983260307718, 0.004650911314677617, 0.0046729432448970095, 0.004695079543038374, 0.004717320703505198, 0.004747929646265777, 0.004913910552399685, 0.00510265622363452, 0.005193610727530702, 0.005362037404954031, 0.005585748055104956, 0.005805199238976403, 0.006012449990164007, 0.006190717207414313, 0.006434650817018674, 0.0066738960449207844, 0.006850766630594357, 0.007080454578919811, 0.007353537707414361, 0.0076213250101135775, 0.007891676301329798, 0.008166264481126773, 0.008453487203305137, 0.00865940020621074, 0.008793012938584536, 0.009099548102584403, 0.00942386875495407, 0.009568055489002199, 0.009835524579543032, 0.010098294001793871, 0.010257404066641647, 0.010403149269090814, 0.010531978198479244, 0.010753349866179766, 0.010774881488360701, 0.010811620620907663, 0.010944931687657464, 0.011061768826348291, 0.011087354543813033, 0.010997851180084516, 0.01097211483599529, 0.010889863878219873, 0.010869576763343844, 0.01084186807352716, 0.010742371282001445, 0.010556880566324355, 0.010298103304720668, 0.01012061992489439, 0.009941542456217943, 0.009707417655460479, 0.009507668819109588, 0.009250779150643616, 0.008904365767917331, 0.008634257977412293, 0.00850249488188229, 0.008635276767691344, 0.008235509647944695, 0.007854249607279578, 0.007490639866938521, 0.0071438633124371875, 0.006813140657320683, 0.006497728691928167, 0.006196918613230279, 0.005910034431986166, 0.0056364314536406, 0.005375494829547455, 0.0051266381752637855, 0.004889302252809461, 0.00466295371393119, 0.004447083901546639, 0.004241207706675322, 0.004044862478287445, 0.0038576069836209355, 0.003679020416630219, 0.0035087014523385203, 0.0033462673449685867, 0.0031913530678251583, 0.003043610492996235, 0.0029027076090298335, 0.0027683277748280907, 0.002640169008082093, 0.002517943306648379, 0.002401376001342045, 0.0022902051386921064, 0.0021841808922719538, 0.0020830650012820862, 0.001986630235123431, 0.001894659882758081, 0.0018069472657098811, 0.0017232952736104968, 0.0016435159212471956, 0.0015674299261169648, 0.0014948663055376098, 0.0014256619924104409, 0.0013596614687711092, 0.0012967164163050666, 0.0012366853830423012, 0.001179433465482307, 0.001124832005434985, 0.0010727583008961765, 0.0010230953303081208, 0.0009757314895851712, 0.0009305603413138168, 0.0008874803755634039, 0.0008463947817700378, 0.0008072112311810438, 0.0007698416693710798, 0.0007342021183636474, 0.0007002124879133201, 0.0006677963955245897, 0.0006368809948028789, 0.0006073968117519871, 0.0005792775886500843, 0.0005524601351534156, 0.0005268841862931025, 0.0005024922670459374, 0.0004792295631748227, 0.00045704379804861, 0.0004358851151645166, 0.0004157059661091309, 0.00039646100370622036, 0.00037810698011122765, 0.00036060264962344186, 0.0003439086759974506, 0.0003279875440455746, 0.00031280347533263513, 0.00029832234777360495, 0.00028451161895345656, 0.0002713402529968922, 0.0002587786508236139, 0.0002467985836323986, 0.00023537312946451198, 0.00022447661270388704, 0.00021408454637813037, 0.0002041735771306749, 0.00019472143274043555, 0.00018570687207101558, 0.00017710963733700555, 0.00016891040858008874, 0.00016109076025266837, 0.0001536331198114314, 0.00014652072822781748, 0.00013973760232663369, 0.00013326849886819813, 0.00012709888029328092, 0.00012121488205387618, 0.00011560328145638165, 0.00011025146794717389, 0.00010514741477380172, 0.00010027965195811534, 9.56372405205941e-05, 9.120974789795095e-05, 8.698722449876979e-05, 8.296018134449172e-05, 7.911956874550337e-05] } +//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. { name: "PMTCHARGE", index: "r14688", @@ -248,42 +156,11 @@ valid_begin: [0,0], valid_end: [0,0], //units of pC here, implementers can choose their own units -charge: [0.5, 0.52525253, 0.55050505, 0.57575758, 0.6010101, 0.62626263, - 0.65151515, 0.67676768, 0.7020202, 0.72727273, 0.75252525, 0.77777778, - 0.8030303, 0.82828283, 0.85353535, 0.87878788, 0.9040404, 0.92929293, - 0.95454545, 0.97979798, 1.00505051, 1.03030303, 1.05555556, 1.08080808, - 1.10606061, 1.13131313, 1.15656566, 1.18181818, 1.20707071, 1.23232323, - 1.25757576, 1.28282828, 1.30808081, 1.33333333, 1.35858586, 1.38383838, - 1.40909091, 1.43434343, 1.45959596, 1.48484848, 1.51010101, 1.53535354, - 1.56060606, 1.58585859, 1.61111111, 1.63636364, 1.66161616, 1.68686869, - 1.71212121, 1.73737374, 1.76262626, 1.78787879, 1.81313131, 1.83838384, - 1.86363636, 1.88888889, 1.91414141, 1.93939394, 1.96464646, 1.98989899, - 2.01515152, 2.04040404, 2.06565657, 2.09090909, 2.11616162, 2.14141414, - 2.16666667, 2.19191919, 2.21717172, 2.24242424, 2.26767677, 2.29292929, - 2.31818182, 2.34343434, 2.36868687, 2.39393939, 2.41919192, 2.44444444, - 2.46969697, 2.49494949, 2.52020202, 2.54545455, 2.57070707, 2.5959596, - 2.62121212, 2.64646465, 2.67171717, 2.6969697, 2.72222222, 2.74747475, - 2.77272727, 2.7979798, 2.82323232, 2.84848485, 2.87373737, 2.8989899, - 2.92424242, 2.94949495, 2.97474747, 3. ] +charge: [0.0, 0.0076012651770227535, 0.015202530354045507, 0.02280379553106826, 0.030405060708091014, 0.03800632588511377, 0.04560759106213652, 0.053208856239159275, 0.06081012141618203, 0.06841138659320478, 0.07601265177022754, 0.08361391694725029, 0.09121518212427304, 0.0988164473012958, 0.10641771247831855, 0.1140189776553413, 0.12162024283236406, 0.1292215080093868, 0.13682277318640956, 0.14442403836343232, 0.15202530354045507, 0.15962656871747782, 0.16722783389450058, 0.17482909907152333, 0.18243036424854608, 0.19003162942556884, 0.1976328946025916, 0.20523415977961434, 0.2128354249566371, 0.22043669013365985, 0.2280379553106826, 0.23563922048770536, 0.2432404856647281, 0.25084175084175087, 0.2584430160187736, 0.2660442811957964, 0.2736455463728191, 0.2812468115498419, 0.28884807672686463, 0.2964493419038874, 0.30405060708091014, 0.3116518722579329, 0.31925313743495565, 0.3268544026119784, 0.33445566778900115, 0.3420569329660239, 0.34965819814304666, 0.3572594633200694, 0.36486072849709217, 0.3724619936741149, 0.3800632588511377, 0.38766452402816043, 0.3952657892051832, 0.40286705438220594, 0.4104683195592287, 0.41806958473625144, 0.4256708499132742, 0.43327211509029695, 0.4408733802673197, 0.44847464544434246, 0.4560759106213652, 0.46367717579838796, 0.4712784409754107, 0.47887970615243347, 0.4864809713294562, 0.494082236506479, 0.5016835016835017, 0.5092847668605245, 0.5168860320375472, 0.52448729721457, 0.5320885623915927, 0.5396898275686155, 0.5472910927456383, 0.554892357922661, 0.5624936230996838, 0.5700948882767065, 0.5776961534537293, 0.585297418630752, 0.5928986838077748, 0.6004999489847975, 0.6081012141618203, 0.615702479338843, 0.6233037445158658, 0.6309050096928885, 0.6385062748699113, 0.646107540046934, 0.6537088052239568, 0.6613100704009796, 0.6689113355780023, 0.6765126007550251, 0.6841138659320478, 0.6917151311090706, 0.6993163962860933, 0.7069176614631161, 0.7145189266401388, 0.7221201918171616, 0.7297214569941843, 0.7373227221712071, 0.7449239873482298, 0.7525252525252526, 0.7525252525252526, 0.7777777777777778, 0.803030303030303, 0.8282828282828283, 0.8535353535353536, 0.8787878787878788, 0.904040404040404, 0.9292929292929293, 0.9545454545454546, 0.9797979797979798, 1.0050505050505052, 1.0303030303030303, 1.0555555555555556, 1.0808080808080809, 1.106060606060606, 1.1313131313131313, 1.1565656565656566, 1.1818181818181817, 1.2070707070707072, 1.2323232323232323, 1.2575757575757576, 1.2828282828282829, 1.308080808080808, 1.3333333333333335, 1.3585858585858586, 1.3838383838383839, 1.4090909090909092, 1.4343434343434343, 1.4595959595959596, 1.4848484848484849, 1.5101010101010102, 1.5353535353535352, 1.5606060606060606, 1.5858585858585859, 1.6111111111111112, 1.6363636363636362, 1.6616161616161615, 1.6868686868686869, 1.7121212121212122, 1.7373737373737375, 1.7626262626262625, 1.7878787878787878, 1.8131313131313131, 1.8383838383838385, 1.8636363636363635, 1.8888888888888888, 1.9141414141414141, 1.9393939393939394, 1.9646464646464645, 1.9898989898989898, 2.0, 2.0303030303030303, 2.0606060606060606, 2.090909090909091, 2.121212121212121, 2.1515151515151514, 2.1818181818181817, 2.212121212121212, 2.242424242424242, 2.2727272727272725, 2.303030303030303, 2.3333333333333335, 2.3636363636363638, 2.393939393939394, 2.4242424242424243, 2.4545454545454546, 2.484848484848485, 2.515151515151515, 2.5454545454545454, 2.5757575757575757, 2.606060606060606, 2.6363636363636362, 2.666666666666667, 2.6969696969696972, 2.7272727272727275, 2.757575757575758, 2.787878787878788, 2.8181818181818183, 2.8484848484848486, 2.878787878787879, 2.909090909090909, 2.9393939393939394, 2.9696969696969697, 3.0, 3.0303030303030303, 3.0606060606060606, 3.090909090909091, 3.121212121212121, 3.1515151515151514, 3.1818181818181817, 3.212121212121212, 3.242424242424242, 3.2727272727272725, 3.3030303030303028, 3.3333333333333335, 3.3636363636363638, 3.393939393939394, 3.4242424242424243, 3.4545454545454546, 3.484848484848485, 3.515151515151515, 3.5454545454545454, 3.5757575757575757, 3.6060606060606064, 3.6363636363636367, 3.666666666666667, 3.6969696969696972, 3.7272727272727275, 3.757575757575758, 3.787878787878788, 3.8181818181818183, 3.8484848484848486, 3.878787878787879, 3.909090909090909, 3.9393939393939394, 3.9696969696969697, 4.0, 4.03030303030303, 4.0606060606060606, 4.090909090909091, 4.121212121212121, 4.151515151515151, 4.181818181818182, 4.212121212121213, 4.242424242424242, 4.272727272727273, 4.303030303030303, 4.333333333333334, 4.363636363636363, 4.3939393939393945, 4.424242424242424, 4.454545454545455, 4.484848484848484, 4.515151515151516, 4.545454545454545, 4.575757575757576, 4.6060606060606055, 4.636363636363637, 4.666666666666667, 4.696969696969697, 4.7272727272727275, 4.757575757575758, 4.787878787878788, 4.818181818181818, 4.848484848484849, 4.878787878787879, 4.909090909090909, 4.9393939393939394, 4.96969696969697, 5.0] //this will be integrated and normalized -charge_prob: [0.00404797, 0.00409813, 0.00420497, 0.00433134, 0.00442419, 0.00457036, - 0.00475225, 0.00489623, 0.00504698, 0.00520678, 0.00538004, 0.00558134, - 0.00579648, 0.00602358, 0.00627702, 0.00655186, 0.00690595, 0.00725319, - 0.00760378, 0.00803784, 0.00852465, 0.0090098, 0.00955719, 0.01011441, - 0.01070746, 0.01141554, 0.01201647, 0.01271394, 0.01341548, 0.01422644, - 0.01491398, 0.01573887, 0.01646723, 0.0171682, 0.01790653, 0.0185873, - 0.01919076, 0.01992776, 0.02040372, 0.02082656, 0.02113557, 0.02144401, - 0.02158423, 0.02172909, 0.02174297, 0.0216441, 0.02150061, 0.0212557, - 0.02085128, 0.02036733, 0.0199064, 0.01934609, 0.01875889, 0.01807333, - 0.01730367, 0.01659073, 0.01577748, 0.01500998, 0.01422533, 0.01351052, - 0.01267201, 0.01189517, 0.01121362, 0.01050045, 0.00977259, 0.00915459, - 0.00856919, 0.00798707, 0.00747225, 0.00694335, 0.00647908, 0.0061025, - 0.00575862, 0.00538446, 0.00503128, 0.00479022, 0.00455177, 0.00433935, - 0.00411922, 0.00401963, 0.00382772, 0.00374832, 0.00359177, 0.00353158, - 0.00344877, 0.00338301, 0.00335415, 0.00332084, 0.00327416, 0.00326635, - 0.00326276, 0.00325851, 0.00326608, 0.00324824, 0.00326045, 0.00333577, - 0.00332301, 0.00332905, 0.00331982, 0.00331334] +charge_prob: [0.0017330368518491896, 0.001748648179499663, 0.0017644001351758772, 0.0017802939856657732, 0.001796331009168615, 0.0018125124953977823, 0.0018288397456844917, 0.0018453140730824496, 0.00186193680247345, 0.0018787092706739228, 0.001895632826542443, 0.0019127088310882038, 0.0019299386575804746, 0.001947323691659038, 0.001964865331445625, 0.001982564987656354, 0.00200042408371518, 0.0020184440558683714, 0.0020366263533000096, 0.0020549724382485385, 0.0020734837861243554, 0.0020921618856284676, 0.0021110082388722134, 0.0021300243614980644, 0.002149211782801516, 0.002168572045854072, 0.002188106707627342, 0.002207817339118254, 0.0022277055254753967, 0.0022477728661264964, 0.002268020974907047, 0.0022884514801900942, 0.002309066025017193, 0.002329866267230541, 0.0023508538796063027, 0.002372030549989141, 0.002393397981427948, 0.0024149578923128127, 0.00243671201651321, 0.0024586621035174445, 0.002480809918573344, 0.0025031572428302223, 0.0025257058734821226, 0.0025484576239123476, 0.002571414323839295, 0.002594577819463605, 0.0026179499736166336, 0.002641532665910262, 0.00266532779288806, 0.002689337268177804, 0.002713563022645377, 0.0027380070045500463, 0.0027626711797011485, 0.0027875575316161794, 0.0028126680616803105, 0.0028380047893073433, 0.0028635697521021144, 0.002889365006024356, 0.0029153926255540436, 0.0029416547038582275, 0.002968153352959363, 0.002994890703905166, 0.003021868906939991, 0.0030490901316777585, 0.003076556567276434, 0.003104270422614087, 0.003132233926466526, 0.003160449327686542, 0.003188918895384764, 0.0032176449191121414, 0.0032466297090440704, 0.0032758755961661877, 0.0033053849324618193, 0.0033351600911011416, 0.003365203466632024, 0.0033955174751726085, 0.0034261045546056085, 0.0034569671647743765, 0.0034881077876807135, 0.0035195289276844866, 0.003551233111705027, 0.003583222889424343, 0.0036155008334921752, 0.0036480695397328893, 0.0036809316273542308, 0.0037140897391579725, 0.003747546541752441, 0.0037813047257669774, 0.0038153670060683143, 0.0038497361219789095, 0.003884414837497249, 0.003919405941520126, 0.003954712248066922, 0.003990336596505929, 0.004026281851782677, 0.004062550904650345, 0.0040991466719022375, 0.004136072096606353, 0.0041733301483420715, 0.004210923823438969, 0.004232287224297383, 0.004390642214902294, 0.004559883906372073, 0.00473853780532705, 0.004937909928865185, 0.005154110275962414, 0.005432663657865599, 0.005705823141180281, 0.005981619198699556, 0.006323078046816779, 0.006706037102904671, 0.007087685783686905, 0.007518303046248052, 0.007956641674901304, 0.008423175229455416, 0.008980200667583314, 0.009452926514538431, 0.010001598610541767, 0.010553477787747323, 0.011191435941632716, 0.011732296714917195, 0.01238120509711367, 0.012954185066603627, 0.013505611874203844, 0.014086427553193176, 0.014621963903677548, 0.015096688058256792, 0.015676457818396307, 0.01605087401000368, 0.016383507361666765, 0.016626596752406332, 0.016869237019434997, 0.01697954288522381, 0.017093502250638642, 0.017104420904321665, 0.017026638375791617, 0.016913758877114923, 0.016721098386875407, 0.016402956818151754, 0.016022254460787453, 0.01565965269067048, 0.015218879714665113, 0.01475695123517654, 0.014217646557444522, 0.013612177593981187, 0.013051336864067621, 0.012411577098312665, 0.011807811618386939, 0.011190560355908758, 0.010628243859041852, 0.010347305682504577, 0.009575054479596258, 0.00886043875578678, 0.00819915699825436, 0.007587228729290388, 0.007020970546462952, 0.006496973950976509, 0.006012084830769204, 0.005563384474849636, 0.005148172004591952, 0.004763948116237395, 0.004408400036742882, 0.0040793876024207785, 0.0037749303765725714, 0.0034931957285731035, 0.0032324878026493554, 0.0029912373099531533, 0.002767992082482841, 0.002561408331994794, 0.0023702425612891977, 0.002193344079181436, 0.0020296480741041306, 0.001878169204647546, 0.0017379956684576542, 0.001608283713790533, 0.0014882525606863398, 0.0013771797011916523, 0.0012743965503406612, 0.0011792844217169928, 0.0010912708033717045, 0.0010098259116809681, 0.0009344595023999333, 0.0008647179197174368, 0.0008001813655488222, 0.0007404613726298224, 0.0006851984662012074, 0.0006340600002090887, 0.0005867381549962392, 0.0005429480844318618, 0.000502426201326754, 0.00046492859081319934, 0.00043022954213920166, 0.00039812019003941163, 0.0003684072575047266, 0.00034091189238284443, 0.0003154685908069046, 0.0002919242009719404, 0.00027013700126257023, 0.00024997584718283755, 0.000231319381953307, 0.0002140553060237155, 0.00019807970110414489, 0.00018329640464581778, 0.00016961643100631843, 0.00015695743581502707, 0.00014524322031460904, 0.000134403272695019, 0.00012437234365916016, 0.00011509005366537832, 0.00010650052948265817, 9.855206787081864e-05, 9.119682436129093e-05, 8.439052526514016e-05, 7.80922011748158e-05, 7.226394035548208e-05, 6.687066054151339e-05, 6.187989776451591e-05, 5.726161094176449e-05, 5.298800104880328e-05, 4.903334378775082e-05, 4.5373834744084314e-05, 4.1987446099847285e-05, 3.8853794040792e-05, 3.595401605933277e-05, 3.3270657414758236e-05, 3.0787566067264625e-05, 2.848979545338742e-05, 2.636351451759838e-05, 2.439592445852344e-05, 2.257518168864369e-05, 2.0890326543752587e-05, 1.9331217313043576e-05, 1.7888469192736142e-05, 1.6553397795779476e-05, 1.5317966877600952e-05, 1.4174739963242124e-05, 1.311683558471055e-05, 1.2137885859105085e-05, 1.1231998158183426e-05, 1.0393719638646954e-05, 9.618004419639913e-06, 8.900183209892225e-06, 8.23593520168223e-06, 7.621262062439026e-06, 7.052463867431664e-06, 6.526116828675452e-06, 6.039052685998563e-06, 5.588339636216475e-06, 5.171264685620855e-06, 4.785317319556241e-06] + } From af221273ae4ccf53cdf433a715b72f92e0e86310 Mon Sep 17 00:00:00 2001 From: Benjamin Harris <113062337+hbjamin@users.noreply.github.com> Date: Sat, 8 Jun 2024 17:57:52 -0400 Subject: [PATCH 006/103] Updated description of previous PMTTRANSIT.ratdb update --- ratdb/PMTTRANSIT.ratdb | 20 +++++++++++--------- 1 file changed, 11 insertions(+), 9 deletions(-) diff --git a/ratdb/PMTTRANSIT.ratdb b/ratdb/PMTTRANSIT.ratdb index f6ef94cc..9c547c25 100644 --- a/ratdb/PMTTRANSIT.ratdb +++ b/ratdb/PMTTRANSIT.ratdb @@ -30,9 +30,10 @@ valid_begin : [0, 0], valid_end : [0, 0], cable_delay: 0.0, time : [-20.0 , -19.9 , -19.8 , -19.7 , -19.6 , -19.5 , -19.4 , -19.3 , -19.2 , -19.1 , -19.0 , -18.9 , -18.8 , -18.7 , -18.6 , -18.5 , -18.4 , -18.3 , -18.2 , -18.1 , -18.0 , -17.9 , -17.8 , -17.7 , -17.6 , -17.5 , -17.4 , -17.3 , -17.2 , -17.1 , -17.0 , -16.9 , -16.8 , -16.7 , -16.6 , -16.5 , -16.4 , -16.3 , -16.2 , -16.1 , -16.0 , -15.9 , -15.8 , -15.7 , -15.6 , -15.5 , -15.4 , -15.3 , -15.2 , -15.1 , -15.0 , -14.9 , -14.8 , -14.7 , -14.6 , -14.5 , -14.4 , -14.3 , -14.2 , -14.1 , -14.0 , -13.9 , -13.8 , -13.7 , -13.6 , -13.5 , -13.4 , -13.3 , -13.2 , -13.1 , -13.0 , -12.9 , -12.8 , -12.7 , -12.6 , -12.5 , -12.4 , -12.3 , -12.2 , -12.1 , -12.0 , -11.9 , -11.8 , -11.7 , -11.6 , -11.5 , -11.4 , -11.3 , -11.2 , -11.1 , -11.0 , -10.9 , -10.8 , -10.7 , -10.6 , -10.5 , -10.4 , -10.3 , -10.2 , -10.1 , -10.0 , -9.9 , -9.8 , -9.7 , -9.6 , -9.5 , -9.4 , -9.3 , -9.2 , -9.1 , -9.0 , -8.9 , -8.8 , -8.7 , -8.6 , -8.5 , -8.4 , -8.3 , -8.2 , -8.1 , -8.0 , -7.9 , -7.8 , -7.7 , -7.6 , -7.5 , -7.4 , -7.3 , -7.2 , -7.1 , -7.0 , -6.9 , -6.8 , -6.7 , -6.6 , -6.5 , -6.4 , -6.3 , -6.2 , -6.1 , -6.0 , -5.9 , -5.8 , -5.7 , -5.6 , -5.5 , -5.4 , -5.3 , -5.2 , -5.1 , -5.0 , -4.9 , -4.8 , -4.7 , -4.6 , -4.5 , -4.4 , -4.3 , -4.2 , -4.1 , -4.0 , -3.9 , -3.8 , -3.7 , -3.6 , -3.5 , -3.4 , -3.3 , -3.2 , -3.1 , -3.0 , -2.9 , -2.8 , -2.7 , -2.6 , -2.5 , -2.4 , -2.3 , -2.2 , -2.1 , -2.0 , -1.9 , -1.8 , -1.7 , -1.6 , -1.5 , -1.4 , -1.3 , -1.2 , -1.1 , -1.0 , -0.9 , -0.8 , -0.7 , -0.6 , -0.5 , -0.4 , -0.3 , -0.2 , -0.1 , 0.0 , 0.1 , 0.2 , 0.3 , 0.4 , 0.5 , 0.6 , 0.7 , 0.8 , 0.9 , 1.0 , 1.1 , 1.2 , 1.3 , 1.4 , 1.5 , 1.6 , 1.7 , 1.8 , 1.9 , 2.0 , 2.1 , 2.2 , 2.3 , 2.4 , 2.5 , 2.6 , 2.7 , 2.8 , 2.9 , 3.0 , 3.1 , 3.2 , 3.3 , 3.4 , 3.5 , 3.6 , 3.7 , 3.8 , 3.9 , 4.0 , 4.1 , 4.2 , 4.3 , 4.4 , 4.5 , 4.6 , 4.7 , 4.8 , 4.9 , 5.0 , 5.1 , 5.2 , 5.3 , 5.4 , 5.5 , 5.6 , 5.7 , 5.8 , 5.9 , 6.0 , 6.1 , 6.2 , 6.3 , 6.4 , 6.5 , 6.6 , 6.7 , 6.8 , 6.9 , 7.0 , 7.1 , 7.2 , 7.3 , 7.4 , 7.5 , 7.6 , 7.7 , 7.8 , 7.9 , 8.0 , 8.1 , 8.2 , 8.3 , 8.4 , 8.5 , 8.6 , 8.7 , 8.8 , 8.9 , 9.0 , 9.1 , 9.2 , 9.3 , 9.4 , 9.5 , 9.6 , 9.7 , 9.8 , 9.9 , 10.0 , 10.1 , 10.2 , 10.3 , 10.4 , 10.5 , 10.6 , 10.7 , 10.8 , 10.9 , 11.0 , 11.1 , 11.2 , 11.3 , 11.4 , 11.5 , 11.6 , 11.7 , 11.8 , 11.9 , 12.0 , 12.1 , 12.2 , 12.3 , 12.4 , 12.5 , 12.6 , 12.7 , 12.8 , 12.9 , 13.0 , 13.1 , 13.2 , 13.3 , 13.4 , 13.5 , 13.6 , 13.7 , 13.8 , 13.9 , 14.0 , 14.1 , 14.2 , 14.3 , 14.4 , 14.5 , 14.6 , 14.7 , 14.8 , 14.9 , 15.0 , 15.1 , 15.2 , 15.3 , 15.4 , 15.5 , 15.6 , 15.7 , 15.8 , 15.9 , 16.0 , 16.1 , 16.2 , 16.3 , 16.4 , 16.5 , 16.6 , 16.7 , 16.8 , 16.9 , 17.0 , 17.1 , 17.2 , 17.3 , 17.4 , 17.5 , 17.6 , 17.7 , 17.8 , 17.9 , 18.0 , 18.1 , 18.2 , 18.3 , 18.4 , 18.5 , 18.6 , 18.7 , 18.8 , 18.9 , 19.0 , 19.1 , 19.2 , 19.3 , 19.4 , 19.5 , 19.6 , 19.7 , 19.8 , 19.9 , 20.0 , 20.1 , 20.2 , 20.3 , 20.4 , 20.5 , 20.6 , 20.7 , 20.8 , 20.9 , 21.0 , 21.1 , 21.2 , 21.3 , 21.4 , 21.5 , 21.6 , 21.7 , 21.8 , 21.9 , 22.0 , 22.1 , 22.2 , 22.3 , 22.4 , 22.5 , 22.6 , 22.7 , 22.8 , 22.9 , 23.0 , 23.1 , 23.2 , 23.3 , 23.4 , 23.5 , 23.6 , 23.7 , 23.8 , 23.9 , 24.0 , 24.1 , 24.2 , 24.3 , 24.4 , 24.5 , 24.6 , 24.7 , 24.8 , 24.9 , 25.0 , 25.1 , 25.2 , 25.3 , 25.4 , 25.5 , 25.6 , 25.7 , 25.8 , 25.9 , 26.0 , 26.1 , 26.2 , 26.3 , 26.4 , 26.5 , 26.6 , 26.7 , 26.8 , 26.9 , 27.0 , 27.1 , 27.2 , 27.3 , 27.4 , 27.5 , 27.6 , 27.7 , 27.8 , 27.9 , 28.0 , 28.1 , 28.2 , 28.3 , 28.4 , 28.5 , 28.6 , 28.7 , 28.8 , 28.9 , 29.0 , 29.1 , 29.2 , 29.3 , 29.4 , 29.5 , 29.6 , 29.7 , 29.8 , 29.9 , 30.0 , 30.1 , 30.2 , 30.3 , 30.4 , 30.5 , 30.6 , 30.7 , 30.8 , 30.9 , 31.0 , 31.1 , 31.2 , 31.3 , 31.4 , 31.5 , 31.6 , 31.7 , 31.8 , 31.9 , 32.0 , 32.1 , 32.2 , 32.3 , 32.4 , 32.5 , 32.6 , 32.7 , 32.8 , 32.9 , 33.0 , 33.1 , 33.2 , 33.3 , 33.4 , 33.5 , 33.6 , 33.7 , 33.8 , 33.9 , 34.0 , 34.1 , 34.2 , 34.3 , 34.4 , 34.5 , 34.6 , 34.7 , 34.8 , 34.9 , 35.0 , 35.1 , 35.2 , 35.3 , 35.4 , 35.5 , 35.6 , 35.7 , 35.8 , 35.9 , 36.0 , 36.1 , 36.2 , 36.3 , 36.4 , 36.5 , 36.6 , 36.7 , 36.8 , 36.9 , 37.0 , 37.1 , 37.2 , 37.3 , 37.4 , 37.5 , 37.6 , 37.7 , 37.8 , 37.9 , 38.0 , 38.1 , 38.2 , 38.3 , 38.4 , 38.5 , 38.6 , 38.7 , 38.8 , 38.9 , 39.0 , 39.1 , 39.2 , 39.3 , 39.4 , 39.5 , 39.6 , 39.7 , 39.8 , 39.9 , 40.0 , 40.1 , 40.2 , 40.3 , 40.4 , 40.5 , 40.6 , 40.7 , 40.8 , 40.9 , 41.0 , 41.1 , 41.2 , 41.3 , 41.4 , 41.5 , 41.6 , 41.7 , 41.8 , 41.9 , 42.0 , 42.1 , 42.2 , 42.3 , 42.4 , 42.5 , 42.6 , 42.7 , 42.8 , 42.9 , 43.0 , 43.1 , 43.2 , 43.3 , 43.4 , 43.5 , 43.6 , 43.7 , 43.8 , 43.9 , 44.0 , 44.1 , 44.2 , 44.3 , 44.4 , 44.5 , 44.6 , 44.7 , 44.8 , 44.9 , 45.0 , 45.1 , 45.2 , 45.3 , 45.4 , 45.5 , 45.6 , 45.7 , 45.8 , 45.9 , 46.0 , 46.1 , 46.2 , 46.3 , 46.4 , 46.5 , 46.6 , 46.7 , 46.8 , 46.9 , 47.0 , 47.1 , 47.2 , 47.3 , 47.4 , 47.5 , 47.6 , 47.7 , 47.8 , 47.9 , 48.0 , 48.1 , 48.2 , 48.3 , 48.4 , 48.5 , 48.6 , 48.7 , 48.8 , 48.9 , 49.0 , 49.1 , 49.2 , 49.3 , 49.4 , 49.5 , 49.6 , 49.7 , 49.8 , 49.9 , 50.0 , 50.1 , 50.2 , 50.3 , 50.4 , 50.5 , 50.6 , 50.7 , 50.8 , 50.9 , 51.0 , 51.1 , 51.2 , 51.3 , 51.4 , 51.5 , 51.6 , 51.7 , 51.8 , 51.9 , 52.0 , 52.1 , 52.2 , 52.3 , 52.4 , 52.5 , 52.6 , 52.7 , 52.8 , 52.9 , 53.0 , 53.1 , 53.2 , 53.3 , 53.4 , 53.5 , 53.6 , 53.7 , 53.8 , 53.9 , 54.0 , 54.1 , 54.2 , 54.3 , 54.4 , 54.5 , 54.6 , 54.7 , 54.8 , 54.9 , 55.0 , 55.1 , 55.2 , 55.3 , 55.4 , 55.5 , 55.6 , 55.7 , 55.8 , 55.9 , 56.0 , 56.1 , 56.2 , 56.3 , 56.4 , 56.5 , 56.6 , 56.7 , 56.8 , 56.9 , 57.0 , 57.1 , 57.2 , 57.3 , 57.4 , 57.5 , 57.6 , 57.7 , 57.8 , 57.9 , 58.0 , 58.1 , 58.2 , 58.3 , 58.4 , 58.5 , 58.6 , 58.7 , 58.8 , 58.9 , 59.0 , 59.1 , 59.2 , 59.3 , 59.4 , 59.5 , 59.6 , 59.7 , 59.8 , 59.9 , 60.0 , 60.1 , 60.2 , 60.3 , 60.4 , 60.5 , 60.6 , 60.7 , 60.8 , 60.9 , 61.0 , 61.1 , 61.2 , 61.3 , 61.4 , 61.5 , 61.6 , 61.7 , 61.8 , 61.9 , 62.0 , 62.1 , 62.2 , 62.3 , 62.4 , 62.5 , 62.6 , 62.7 , 62.8 , 62.9 , 63.0 , 63.1 , 63.2 , 63.3 , 63.4 , 63.5 , 63.6 , 63.7 , 63.8 , 63.9 , 64.0 , 64.1 , 64.2 , 64.3 , 64.4 , 64.5 , 64.6 , 64.7 , 64.8 , 64.9 , 65.0 , 65.1 , 65.2 , 65.3 , 65.4 , 65.5 , 65.6 , 65.7 , 65.8 , 65.9 , 66.0 , 66.1 , 66.2 , 66.3 , 66.4 , 66.5 , 66.6 , 66.7 , 66.8 , 66.9 , 67.0 , 67.1 , 67.2 , 67.3 , 67.4 , 67.5 , 67.6 , 67.7 , 67.8 , 67.9 , 68.0 , 68.1 , 68.2 , 68.3 , 68.4 , 68.5 , 68.6 , 68.7 , 68.8 , 68.9 , 69.0 , 69.1 , 69.2 , 69.3 , 69.4 , 69.5 , 69.6 , 69.7 , 69.8 , 69.9 , 70.0 , 70.1 , 70.2 , 70.3 , 70.4 , 70.5 , 70.6 , 70.7 , 70.8 , 70.9 , 71.0 , 71.1 , 71.2 , 71.3 , 71.4 , 71.5 , 71.6 , 71.7 , 71.8 , 71.9 , 72.0 , 72.1 , 72.2 , 72.3 , 72.4 , 72.5 , 72.6 , 72.7 , 72.8 , 72.9 , 73.0 , 73.1 , 73.2 , 73.3 , 73.4 , 73.5 , 73.6 , 73.7 , 73.8 , 73.9 , 74.0 , 74.1 , 74.2 , 74.3 , 74.4 , 74.5 , 74.6 , 74.7 , 74.8 , 74.9 , 75.0 , 75.1 , 75.2 , 75.3 , 75.4 , 75.5 , 75.6 , 75.7 , 75.8 , 75.9 , 76.0 , 76.1 , 76.2 , 76.3 , 76.4 , 76.5 , 76.6 , 76.7 , 76.8 , 76.9 , 77.0 , 77.1 , 77.2 , 77.3 , 77.4 , 77.5 , 77.6 , 77.7 , 77.8 , 77.9 , 78.0 , 78.1 , 78.2 , 78.3 , 78.4 , 78.5 , 78.6 , 78.7 , 78.8 , 78.9 , 79.0 , 79.1 , 79.2 , 79.3 , 79.4 , 79.5 , 79.6 , 79.7 , 79.8 , 79.9], -// Average distribution from dark box tests at Berkeley -// Transit time of 2.27 ns -// Late ratio of 8.11% + +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of prompt peak is 0.965 ns +// Late ratio is 8.12% time_prob : [1.0295684447093295e-05, 1.0005440907763509e-05, 8.65327990079723e-06, 7.441897347036223e-06, 5.404665894004633e-06, 6.443874493762297e-06, 4.903564204108379e-06, 3.5132191231600398e-06, 3.294005009220272e-06, 3.1786166611446467e-06, 2.799724330627926e-06, 2.6679249855892243e-06, 3.21449964055082e-06, 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7.3837709795799796e-16, 7.9137297893594382e-16, 8.4817255779183827e-16, 9.0904883909282383e-16, 9.7429442188911429e-16, 1.0442229060778929e-15, 1.1191703997068148e-15, 1.1994971344619014e-15, 1.2855891971045951e-15, 1.3778603851800461e-15, 1.4767541959160101e-15, 1.5827459578719032e-15, 1.6963451155836933e-15, 1.818097678185665e-15, 1.9485888437782479e-15, 2.0884458121558068e-15, 2.2383407994136522e-15, 2.3989942689238265e-15, 2.5711783942092155e-15, 2.7557207703601193e-15, 2.9535083918320494e-15, 3.165491915743838e-15, 3.3926902311674197e-15, 3.6361953563713663e-15, 3.8971776875565337e-15, 4.1768916243116546e-15, 4.4766815988273477e-15, 4.7979885378477003e-15, 5.1423567884184814e-15, 5.5114415407202931e-15, 5.9070167836641572e-15, 6.3309838314877383e-15, 6.7853804623349073e-15, 7.2723907127428052e-15, 7.7943553751131431e-15, 8.3537832486233912e-15, 8.9533631976547838e-15, 9.5959770756954936e-15, 1.0284713576837065e-14, 1.1022883081440697e-14, 1.1814033567328431e-14, 1.26619676629756e-14, 1.3570760924669947e-14, 1.4544781425485749e-14, 1.5588710750226441e-14, 1.670756649724695e-14, 1.7906726395309744e-14, 1.919195415139118e-14, 2.0569427153674329e-14, 2.2045766162881608e-14, 2.362806713465709e-14, 2.5323935325951449e-14, 2.7141521849340163e-14, 2.9089562850971789e-14, 3.1177421500453185e-14, 3.3415132994494228e-14, 3.5813452790619842e-14, 3.8383908302782744e-14, 4.1138854307349069e-14, 4.4091532325763651e-14, 4.7256134269314646e-14, 5.0647870651903396e-14, 5.4283043698680855e-14, 5.8179125701944158e-14, 6.2354843000907e-14, 6.6830265988989111e-14, 7.1626905581240378e-14, 7.6767816605566233e-14, 8.2277708614698933e-14, 8.8183064651528173e-14, 9.4512268538630226e-14, 1.0129574130380779e-13, 1.0856608739736278e-13, 1.1635825140388945e-13, 1.2470968600181521e-13, 1.3366053197797954e-13, 1.4325381116248217e-13, 1.5353563321113396e-13, 1.6455541722939951e-13, 1.7636612930305806e-13, 1.8902453707726232e-13, 2.0259148260761757e-13, 2.1713217479472774e-13, 2.3271650280778118e-13, 2.494193720036329e-13, 2.6732106395596165e-13, 2.8650762232496717e-13, 3.0707126642227099e-13, 3.291108344588022e-13, 3.5273225860611961e-13, 3.7804907415452838e-13, 4.0518296521523908e-13, 4.3426434958945972e-13, 4.65433005615567e-13, 4.9883874400727074e-13, 5.3464212791192854e-13, 5.7301524464994009e-13, 6.1414253284454804e-13, 6.5822166891761096e-13, 7.0546451721224609e-13, 7.5609814830906423e-13, 8.1036593043048624e-13, 8.6852869917892802e-13, 9.3086601123114328e-13, 9.9767748801455118e-13, 1.0692842558238676e-12, 1.1460304892998915e-12, 1.228285065689108e-12, 1.316443337835235e-12, 1.4109290344245061e-12, 1.5121962966181434e-12, 1.6207318608609884e-12, 1.737057398357873e-12, 1.8617320224623043e-12, 1.9953549760291222e-12, 2.1385685116477562e-12, 2.2920609785998056e-12, 2.4565701313782406e-12, 2.6328866756704955e-12, 2.8218580688490405e-12, 3.0243925932363167e-12, 3.2414637217220092e-12, 3.4741147967157807e-12, 3.7234640449246458e-12, 3.9907099520582831e-12, 4.2771370232955552e-12, 4.5841219571996556e-12, 4.9131402627565289e-12, 5.2657733513410435e-12, 5.6437161376981367e-12, 6.0487851864726931e-12, 6.4829274434440814e-12, 6.9482295934316293e-12, 7.446928089849366e-12, 7.9814199041166453e-12, 8.5542740465911943e-12, 9.1682439143994017e-12, 9.8262805255131532e-12, 1.053154670268219e-11, 1.1287432275396383e-11, 1.2097570372945506e-11, 1.296585488688829e-11, 1.3896459186863396e-11, 1.4893856179698877e-11, 1.5962839808233449e-11, 1.7108548093182557e-11, 1.8336487828798984e-11, 1.9652561051026503e-11, 2.1063093405364591e-11, 2.257486455079299e-11, 2.4195140745891244e-11, 2.5931709773776839e-11, 2.7792918373727063e-11, 2.9787712359398045e-11, 3.1925679616467215e-11, 3.4217096186365449e-11, 3.6672975657598324e-11, 3.9305122102053401e-11, 4.2126186810729602e-11, 4.5149729101586431e-11, 4.839028149178298e-11, 5.1863419547554189e-11, 5.5585836747454682e-11, 5.9575424718796698e-11, 6.385135923293505e-11, 6.8434192372731584e-11, 7.3345951315197372e-11, 7.8610244204107552e-11, 8.4252373621460006e-11, 9.0299458203173742e-11, 9.678056298356689e-11, 1.037268390951094e-10, 1.1117167349491045e-10, 1.1915084943759453e-10, 1.2770271846587072e-10, 1.3686838474546451e-10, 1.4669190263039692e-10, 1.5722048840821668e-10, 1.6850474724292086e-10, 1.8059891640634927e-10, 1.9356112596713665e-10, 2.0745367819022084e-10, 2.2234334698982196e-10, 2.383016988751914e-10, 2.5540543693174651e-10, 2.7373676949093171e-10, 2.9338380526079383e-10, 3.1444097681643641e-10, 3.3700949448584835e-10, 3.611978328127021e-10, 3.871222519342733e-10, 4.1490735638044571e-10, 4.4468669397965276e-10, 4.7660339775038765e-10, 5.1081087386349301e-10, 5.474735389818688e-10, 5.8676761052159924e-10, 6.2888195363287913e-10, 6.7401898897169669e-10, 7.2239566562541123e-10, 7.7424450386856169e-10, 8.298147127608997e-10, 8.8937338795930552e-10, 9.532067955007844e-10, 1.0216217477270061e-09, 1.0949470779637484e-09, 1.1735352210431985e-09, 1.2577639072657705e-09, 1.3480379779434201e-09, 1.4447913312508367e-09, 1.5484890077371234e-09, 1.6596294255218159e-09, 1.778746775918646e-09, 1.9064135910015878e-09, 2.0432434954540122e-09, 2.1898941559275182e-09, 2.3470704420864433e-09, 2.5155278145315662e-09, 2.6960759558868401e-09, 2.889582662501702e-09, 3.096978015474308e-09, 3.3192588510436641e-09, 3.557493551837292e-09, 3.8128271820032137e-09, 4.0864869909081054e-09, 4.3797883118550803e-09, 4.6941408841728866e-09, 5.0310556290631811e-09, 5.3921519117737861e-09, 5.7791653250034603e-09, 6.193956030948616e-09, 6.6385177020873936e-09, 7.1149871036747246e-09, 7.6256543640065002e-09, 8.1729739818162108e-09, 8.7595766237102466e-09, 9.3882817683459585e-09, 1.0062111258126461e-08, 1.0784303823547572e-08, 1.1558330650007036e-08, 1.2387912061897477e-08, 1.327703540417492e-08, 1.4229974207349449e-08, 1.5251308728013153e-08, 1.6345947963632739e-08, 1.7519153247420665e-08, 1.8776563536691917e-08, 2.0124222516253122e-08, 2.1568607647095575e-08, 2.3116661300014301e-08, 2.4775824123794954e-08, 2.6554070808350097e-08, 2.8459948414699458e-08, 3.0502617456026603e-08, 3.2691895927265478e-08, 3.5038306494841674e-08, 3.7553127073384575e-08, 4.024844503250664e-08, 4.3137215294191149e-08, 4.6233322600029045e-08, 4.9551648247590893e-08, 5.3108141616700717e-08, 5.6919896829398915e-08, 6.1005234912053815e-08, 6.5383791854532241e-08, 7.007661298968405e-08, 7.510625414676915e-08, 8.0496890065014087e-08, 8.6274430588383966e-08, 9.2466645200059017e-08, 9.9103296495181786e-08, 1.0621628323340248e-07, 1.1383979365880007e-07, 1.2201046982410882e-07, 1.3076758370906448e-07, 1.4015322597936948e-07, 1.5021250829354126e-07, 1.6099378013002974e-07, 1.7254886117676793e-07, 1.8493329040011986e-07, 1.9820659299036746e-07, 2.1243256646680708e-07, 2.2767958731760013e-07, 2.4402093964822002e-07, 2.615351674181342e-07, 2.8030645195874171e-07, 3.0042501658708253e-07, 3.219875602600627e-07, 3.4509772235354275e-07, 3.6986658080024343e-07, 3.9641318598073493e-07, 4.2486513293361834e-07, 4.5535917463520927e-07, 4.8804187929644492e-07, 5.2307033483626841e-07, 5.6061290391748892e-07, 6.0085003317417681e-07, 6.4397512052013155e-07, 6.9019544470708549e-07, 7.3973316160049405e-07, 7.9282637196148553e-07, 8.4973026586724504e-07, 9.1071834927041854e-07, 9.7608375859289936e-07, 1.0461406696725574e-06, 1.1212258078349889e-06, 1.2017000663483536e-06, 1.2879502410402758e-06, 1.3803908894141981e-06, 1.4794663232010025e-06, 1.5856527439229711e-06, 1.6994605317345068e-06, 1.8214366985408729e-06, 1.9521675171858178e-06, 2.0922813393451147e-06, 2.2424516156699997e-06, 2.4034001326967551e-06, 2.575900482080577e-06, 2.7607817788283962e-06, 2.9589326464020338e-06, 3.1713054878460044e-06, 3.3989210634690467e-06, 3.6428733970817457e-06, 3.9043350343716754e-06, 4.1845626786903116e-06, 4.4849032313400435e-06, 4.8068002653935102e-06, 5.1518009641612057e-06, 5.5215635576569008e-06, 5.9178652928041269e-06, 6.3426109756920087e-06, 6.7978421269381619e-06, 7.2857467941636354e-06, 7.808670068743427e-06, 8.3691253573806232e-06, 8.9698064626801785e-06, 9.6136005307872135e-06, 1.0303601928322525e-05, 1.1043127115313822e-05, 1.1835730585608408e-05, 1.2685221951384338e-05, 1.359568425387659e-05, 1.4571493588327522e-05, 1.5617340137487471e-05, 1.6738250714762446e-05, 1.7939612925362139e-05, 1.9227201061577385e-05, 2.0607203856650674e-05, 2.2086254230637984e-05, 2.3671461171235054e-05, 2.5370443902801262e-05, 2.7191368507812153e-05, 2.9142987176760916e-05, 3.1234680275163287e-05, 3.3476501429859151e-05, 3.5879225851316212e-05, 3.8454402124197854e-05, 4.1214407715130126e-05, 4.417250846446887e-05, 4.7342922348021569e-05, 5.074088781521128e-05, 5.4382737032180128e-05, 5.8285974381921619e-05, 6.2469360598828874e-05, 6.6953002942183099e-05, 7.1758451842215038e-05, 7.6908804483607527e-05, 8.2428815824855687e-05, 8.8345017587969149e-05, 9.4685845791815944e-05, 0.00010148177744425123, 0.00010876547705340964, 0.00011657195366761143, 0.00012493872920680464, 0.00013390601890709097, 0.00014351692476470481, 0.00015381764293825496, 0.00016485768615002839, 0.00017669012222143481, 0.00018937182998809233, 0.00020296377397202779, 0.00021753129934955602, 0.00023314444895423326, 0.00024987830430975918, 0.0002678133530185334, 0.00028703588526642244, 0.00030763842278266445, 0.00032972018436993748, 0.00035338759316716348, 0.00037875483222632185, 0.00040594445690834611, 0.00043508807521084523, 0.00046632711066858302, 0.00049981366722730725, 0.00053571152188808496, 0.00057419727947721397, 0.00061546173528845207, 0.00065971150642433096, 0.00070717101250795543, 0.00075808491238842904, 0.00081272113717913575, 0.00087137470347234717, 0.00093437254630902194, 0.0010020796823617965, 0.0010749071032369135, 0.0011533219107840535, 0.0012378603453392575, 0.0013291445289604702, 0.0014279039544537366, 0.0015350030031730814, 0.0016514760761895302, 0.0017785722802952735, 0.0019178120277197814, 0.00207105839059573, 0.0022406066005980691, 0.0024292957007135273, 0.0026406470361854894, 0.0028790350070911014, 0.0031498962816379574, 0.0034599844658024181, 0.0038176780114803693, 0.0042333498820968001, 0.0047198081307679614, 0.005292817018815189, 0.0059717085364610579, 0.006780094095394173, 0.0077466856457448392, 0.0089062344196623056, 0.010300593805646121, 0.011979910395755636, 0.014003943909573583, 0.016443512383578919, 0.019382053641958212, 0.022917287584879181, 0.02716295623449011, 0.032250609812321827, 0.038331397494215047, 0.045577811085975639, 0.054185318955110445, 0.064373816502855674, 0.076388808721613438, 0.090502230502459868, 0.10701280196511165, 0.12624580987603221, 0.14855220294198343, 0.17430688917437917, 0.20390612835048508, 0.23776392252153089, 0.2763073230915839, 0.31997059460503657, 0.36918820320739754, 0.42438663168964214, 0.48597506268721224, 0.522350703634044, 0.5955291389167735, 0.6759485651655683, 0.7638253842040637, 0.859299039127604, 0.9624193971631568, 1.0731346331486185, 1.1912800172729123, 1.316568030374593, 1.4485802362702476, 1.5867613314368505, 1.7304157665693096, 1.8787072913679845, 2.030661713404454, 2.1851730848958715, 2.3410134393580964, 2.496846095908443, 2.6512424357345195, 2.802701936900517, 2.949675134723868, 3.0905890602669985, 3.2238746040224897, 3.3479951604845484, 3.461475836491872, 3.5629324558876787, 3.6510995682339864, 3.724856672083207, 3.7832518945334788, 3.8255224281112477, 3.8511111118045704, 3.8596786524611213, 3.8511111118041086, 3.8255224281103293, 3.7832518945321167, 3.724856672081419, 3.6510995682317957, 3.562932455885113, 3.461475836488965, 3.347995160481334, 3.223874604019008, 3.09058906026329, 2.9496751347199743, 2.8027019368964807, 2.6512424357303837, 2.496846095904248, 2.3410134393538824, 2.185173084891676, 2.0306617134003115, 1.8787072913639264, 1.730415766565364, 1.586761331433042, 1.4485802362665972, 1.3165680303711174, 1.1912800172696243, 1.0731346331455278, 0.9624193971602696, 0.8592990391249228, 0.7638253842015889, 0.675948565163297, 0.5955291389147009, 0.5223507036321636, 0.4561326438166176, 0.3965426703361774, 0.3432088686496009, 0.29573101836450144, 0.253690998758353, 0.2166621457713881, 0.18421747446261302, 0.15593672553809704, 0.13141223420945092, 0.11025365357471477, 0.09209159253020996, 0.07658024982610301, 0.06339914144306752, 0.05225402838291559, 0.04287715678879646, 0.03502692271117899, 0.028487070550527283, 0.023065527994403548, 0.01859297186842219] -// Average distribution from dark box tests at Berkeley -// Transit time of 2.27 ns -// Late ratio of 8.11% +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of prompt peak is 0.965 ns +// Late ratio is 8.12% time_prob : [1.0295684447093295e-05, 1.0005440907763509e-05, 8.65327990079723e-06, 7.441897347036223e-06, 5.404665894004633e-06, 6.443874493762297e-06, 4.903564204108379e-06, 3.5132191231600398e-06, 3.294005009220272e-06, 3.1786166611446467e-06, 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6.44876555033e-05 , 6.01970915851e-05 , 5.6410186056e-05 , 5.30588218206e-05 , 5.00832111178e-05 , 4.743110761e-05 , 4.50570506017e-05 , 4.29216485782e-05 , 4.09909071818e-05 , 3.92356049216e-05 , 3.76307183591e-05 , 3.61548972015e-05 , 3.47899886636e-05 , 3.35206096104e-05 , 3.23337643348e-05 , 3.12185053544e-05 , 3.01656342821e-05 , 2.91674396387e-05 , 2.82174683902e-05 , 2.73103280014e-05 , 2.64415158715e-05 , 2.56072731531e-05 , 2.48044601196e-05 , 2.40304504477e-05 , 2.32830419904e-05 , 2.25603818355e-05 , 2.18609036625e-05 , 2.11832756276e-05 , 2.05263572038e-05 , 1.98891636022e-05 , 1.92708365702e-05 , 1.86706205306e-05 , 1.80878431656e-05 , 1.75218996864e-05 , 1.69722401389e-05 , 1.64383592013e-05 , 1.59197880153e-05 , 1.54160876711e-05 , 1.49268440279e-05 , 1.44516636111e-05 , 1.39901703719e-05 ] -// Average distribution from dark box tests at Berkeley -// Transit time of 2.85 ns -// Late ratio of 7.39% + +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of promt peak is 1.211 ns +// Late ratio of 7.36% time_prob : [6.477252353059505e-06, 6.348617582325032e-06, 6.793208358336695e-06, 8.44573284275054e-06, 7.382786436570142e-06, 7.955318926776582e-06, 6.355868820653126e-06, 5.748041570434093e-06, 5.613774703602447e-06, 7.0433204104966765e-06, 5.338496618848524e-06, 6.07577888957862e-06, 7.407394646812893e-06, 1.0165281338374648e-05, 8.517348788952183e-06, 7.6250279706393535e-06, 9.988751418831212e-06, 1.0342222024553033e-05, 7.707356384009844e-06, 7.807549391069272e-06, 6.935248571117256e-06, 6.99832632406247e-06, 9.024670219333584e-06, 1.0338362850007837e-05, 1.1802476948641399e-05, 9.740157484353449e-06, 8.149093718351616e-06, 7.249272491804335e-06, 3.7100734070217578e-06, 3.344191172921612e-06, 5.4400090871084e-06, 4.536837812944318e-06, 6.038691908504896e-06, 8.615804402877488e-06, 1.1356011595059825e-05, 1.3344233023240597e-05, 8.836419225377086e-06, 1.0247468501179782e-05, 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0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] } // Values based on 100 picosecond timing resolution From da70cd5b0dab9ebdb82c66f4ed7c8eedbd6bb418 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Mon, 24 Jun 2024 17:39:24 -0700 Subject: [PATCH 007/103] add mcindex to ntuple --- src/io/include/RAT/OutNtupleProc.hh | 1 + src/io/src/OutNtupleProc.cc | 2 ++ 2 files changed, 3 insertions(+) diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index 33499982..2c4f3ef5 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -105,6 +105,7 @@ class OutNtupleProc : public Processor { std::vector mcpez; // MCParticles int mcpcount; + int mcid; std::vector pdgcodes; std::vector mcKEnergies; std::vector mcPosx; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 0710ee37..ad9d235c 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -96,6 +96,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("nhits", &nhits); outputTree->Branch("triggerTime", &triggerTime); // MC Information + outputTree->Branch("mcid", &mcid); outputTree->Branch("mcparticlecount", &mcpcount); outputTree->Branch("mcpecount", &mcpecount); outputTree->Branch("mcnhits", &mcnhits); @@ -185,6 +186,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { mcTime.clear(); DS::MC *mc = ds->GetMC(); + mcid = mc->GetID(); mcpcount = mc->GetMCParticleCount(); for (int pid = 0; pid < mcpcount; pid++) { DS::MCParticle *particle = mc->GetMCParticle(pid); From b2c4abc73eac92f2be46822f84705d3eb81498f8 Mon Sep 17 00:00:00 2001 From: hbjamin Date: Tue, 9 Jul 2024 15:47:09 -0400 Subject: [PATCH 008/103] removed noise before promt peak in r11780_hqe_rev, r11780_hqe, and r7081_hqe timing PDFs --- ratdb/PMTTRANSIT.ratdb | 44 ++++++++++++++---------------------------- 1 file changed, 15 insertions(+), 29 deletions(-) diff --git a/ratdb/PMTTRANSIT.ratdb b/ratdb/PMTTRANSIT.ratdb index 9c547c25..f612aa58 100644 --- a/ratdb/PMTTRANSIT.ratdb +++ b/ratdb/PMTTRANSIT.ratdb @@ -23,43 +23,30 @@ time: [-20.0, -19.21568627, -18.43137255, -17.64705882, -16.8627451, -16.0784313 time_prob:[1.40806896e-23, 7.11618481e-22, 3.07415373e-20, 1.13516505e-18, 3.58300581e-17, 9.66698580e-16, 2.22940883e-14, 4.39484357e-13, 7.40546261e-12, 1.06663550e-10, 1.31321230e-09, 1.38200279e-08, 1.24319131e-07, 9.55921167e-07, 6.28291610e-06, 3.52984398e-05, 1.69513710e-04, 6.95839718e-04, 2.44156712e-03, 7.32290148e-03, 1.87738257e-02, 4.11412460e-02, 7.70649974e-02, 1.23393409e-01, 1.68881403e-01, 1.97572620e-01, 1.97572620e-01, 1.68881403e-01, 1.23393409e-01, 7.70649974e-02, 4.11412460e-02, 1.87738257e-02, 7.32290148e-03, 2.44156712e-03, 6.95839718e-04, 1.69513710e-04, 3.52984398e-05, 6.28291610e-06, 9.55921167e-07, 1.24319131e-07, 1.38200279e-08, 1.31321230e-09, 1.06663550e-10, 7.40546261e-12, 4.39484357e-13, 2.22940883e-14, 9.66698580e-16, 3.58300581e-17, 1.13516505e-18, 3.07415373e-20, 7.11618481e-22, 1.40806896e-23], } +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of prompt peak is 0.965 ns +// Late ratio is 8.12% { name: "PMTTRANSIT", index: "r11780_hqe_rev", valid_begin : [0, 0], valid_end : [0, 0], cable_delay: 0.0, -time : [-20.0 , -19.9 , -19.8 , -19.7 , -19.6 , -19.5 , -19.4 , -19.3 , -19.2 , -19.1 , -19.0 , -18.9 , -18.8 , -18.7 , -18.6 , -18.5 , -18.4 , -18.3 , -18.2 , -18.1 , -18.0 , -17.9 , -17.8 , -17.7 , -17.6 , -17.5 , -17.4 , -17.3 , -17.2 , -17.1 , -17.0 , -16.9 , -16.8 , -16.7 , -16.6 , -16.5 , -16.4 , -16.3 , -16.2 , -16.1 , -16.0 , -15.9 , -15.8 , -15.7 , -15.6 , -15.5 , -15.4 , -15.3 , -15.2 , -15.1 , -15.0 , -14.9 , -14.8 , -14.7 , -14.6 , -14.5 , -14.4 , -14.3 , -14.2 , -14.1 , -14.0 , -13.9 , -13.8 , -13.7 , -13.6 , -13.5 , -13.4 , -13.3 , -13.2 , -13.1 , -13.0 , -12.9 , 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, 66.8 , 66.9 , 67.0 , 67.1 , 67.2 , 67.3 , 67.4 , 67.5 , 67.6 , 67.7 , 67.8 , 67.9 , 68.0 , 68.1 , 68.2 , 68.3 , 68.4 , 68.5 , 68.6 , 68.7 , 68.8 , 68.9 , 69.0 , 69.1 , 69.2 , 69.3 , 69.4 , 69.5 , 69.6 , 69.7 , 69.8 , 69.9 , 70.0 , 70.1 , 70.2 , 70.3 , 70.4 , 70.5 , 70.6 , 70.7 , 70.8 , 70.9 , 71.0 , 71.1 , 71.2 , 71.3 , 71.4 , 71.5 , 71.6 , 71.7 , 71.8 , 71.9 , 72.0 , 72.1 , 72.2 , 72.3 , 72.4 , 72.5 , 72.6 , 72.7 , 72.8 , 72.9 , 73.0 , 73.1 , 73.2 , 73.3 , 73.4 , 73.5 , 73.6 , 73.7 , 73.8 , 73.9 , 74.0 , 74.1 , 74.2 , 74.3 , 74.4 , 74.5 , 74.6 , 74.7 , 74.8 , 74.9 , 75.0 , 75.1 , 75.2 , 75.3 , 75.4 , 75.5 , 75.6 , 75.7 , 75.8 , 75.9 , 76.0 , 76.1 , 76.2 , 76.3 , 76.4 , 76.5 , 76.6 , 76.7 , 76.8 , 76.9 , 77.0 , 77.1 , 77.2 , 77.3 , 77.4 , 77.5 , 77.6 , 77.7 , 77.8 , 77.9 , 78.0 , 78.1 , 78.2 , 78.3 , 78.4 , 78.5 , 78.6 , 78.7 , 78.8 , 78.9 , 79.0 , 79.1 , 79.2 , 79.3 , 79.4 , 79.5 , 79.6 , 79.7 , 79.8 , 79.9], - -//Distribution input by Liz Kneale, Sheffield -//Values from https://arxiv.org/pdf/1210.2765.pdf -//Prompt Gaussian distribution with mean=0 and sigma=1.29 -//Second pulse exponential distribution -//Late pulse Gaussian distribution with mean=75 and sigma=1.5 -//Late ratio (20ns to 80ns) 4.3% -//All normalised so that pmax=100 -//time_prob:[6.372073314671898e-51, 2.1131633185864248e-50, 6.965873393507018e-50, 2.282486955682661e-49, 7.434148734263409e-49, 2.4068243756973017e-48, 7.74546990506898e-48, 2.4776579742568847e-47, 7.87816644529279e-47, 2.4899989489405877e-46, 7.822820938125674e-46, 2.4429682868476552e-45, 7.583374136676322e-45, 2.3399002881174974e-44, 7.176661009672538e-44, 2.187951690736043e-43, 6.63045357607164e-43, 1.997280043505786e-42, 5.980326574612045e-42, 1.779922334898079e-41, 5.26583708618515e-41, 1.5485456015254664e-40, 4.526586179963315e-40, 1.3152484582168032e-39, 3.79870023495927e-39, 1.0905672709668396e-38, 3.1121470564342117e-38, 8.827911579962235e-38, 2.489121253328609e-37, 6.976287106069101e-37, 1.943537174854576e-36, 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2.8650762232496717e-13, 3.0707126642227099e-13, 3.291108344588022e-13, 3.5273225860611961e-13, 3.7804907415452838e-13, 4.0518296521523908e-13, 4.3426434958945972e-13, 4.65433005615567e-13, 4.9883874400727074e-13, 5.3464212791192854e-13, 5.7301524464994009e-13, 6.1414253284454804e-13, 6.5822166891761096e-13, 7.0546451721224609e-13, 7.5609814830906423e-13, 8.1036593043048624e-13, 8.6852869917892802e-13, 9.3086601123114328e-13, 9.9767748801455118e-13, 1.0692842558238676e-12, 1.1460304892998915e-12, 1.228285065689108e-12, 1.316443337835235e-12, 1.4109290344245061e-12, 1.5121962966181434e-12, 1.6207318608609884e-12, 1.737057398357873e-12, 1.8617320224623043e-12, 1.9953549760291222e-12, 2.1385685116477562e-12, 2.2920609785998056e-12, 2.4565701313782406e-12, 2.6328866756704955e-12, 2.8218580688490405e-12, 3.0243925932363167e-12, 3.2414637217220092e-12, 3.4741147967157807e-12, 3.7234640449246458e-12, 3.9907099520582831e-12, 4.2771370232955552e-12, 4.5841219571996556e-12, 4.9131402627565289e-12, 5.2657733513410435e-12, 5.6437161376981367e-12, 6.0487851864726931e-12, 6.4829274434440814e-12, 6.9482295934316293e-12, 7.446928089849366e-12, 7.9814199041166453e-12, 8.5542740465911943e-12, 9.1682439143994017e-12, 9.8262805255131532e-12, 1.053154670268219e-11, 1.1287432275396383e-11, 1.2097570372945506e-11, 1.296585488688829e-11, 1.3896459186863396e-11, 1.4893856179698877e-11, 1.5962839808233449e-11, 1.7108548093182557e-11, 1.8336487828798984e-11, 1.9652561051026503e-11, 2.1063093405364591e-11, 2.257486455079299e-11, 2.4195140745891244e-11, 2.5931709773776839e-11, 2.7792918373727063e-11, 2.9787712359398045e-11, 3.1925679616467215e-11, 3.4217096186365449e-11, 3.6672975657598324e-11, 3.9305122102053401e-11, 4.2126186810729602e-11, 4.5149729101586431e-11, 4.839028149178298e-11, 5.1863419547554189e-11, 5.5585836747454682e-11, 5.9575424718796698e-11, 6.385135923293505e-11, 6.8434192372731584e-11, 7.3345951315197372e-11, 7.8610244204107552e-11, 8.4252373621460006e-11, 9.0299458203173742e-11, 9.678056298356689e-11, 1.037268390951094e-10, 1.1117167349491045e-10, 1.1915084943759453e-10, 1.2770271846587072e-10, 1.3686838474546451e-10, 1.4669190263039692e-10, 1.5722048840821668e-10, 1.6850474724292086e-10, 1.8059891640634927e-10, 1.9356112596713665e-10, 2.0745367819022084e-10, 2.2234334698982196e-10, 2.383016988751914e-10, 2.5540543693174651e-10, 2.7373676949093171e-10, 2.9338380526079383e-10, 3.1444097681643641e-10, 3.3700949448584835e-10, 3.611978328127021e-10, 3.871222519342733e-10, 4.1490735638044571e-10, 4.4468669397965276e-10, 4.7660339775038765e-10, 5.1081087386349301e-10, 5.474735389818688e-10, 5.8676761052159924e-10, 6.2888195363287913e-10, 6.7401898897169669e-10, 7.2239566562541123e-10, 7.7424450386856169e-10, 8.298147127608997e-10, 8.8937338795930552e-10, 9.532067955007844e-10, 1.0216217477270061e-09, 1.0949470779637484e-09, 1.1735352210431985e-09, 1.2577639072657705e-09, 1.3480379779434201e-09, 1.4447913312508367e-09, 1.5484890077371234e-09, 1.6596294255218159e-09, 1.778746775918646e-09, 1.9064135910015878e-09, 2.0432434954540122e-09, 2.1898941559275182e-09, 2.3470704420864433e-09, 2.5155278145315662e-09, 2.6960759558868401e-09, 2.889582662501702e-09, 3.096978015474308e-09, 3.3192588510436641e-09, 3.557493551837292e-09, 3.8128271820032137e-09, 4.0864869909081054e-09, 4.3797883118550803e-09, 4.6941408841728866e-09, 5.0310556290631811e-09, 5.3921519117737861e-09, 5.7791653250034603e-09, 6.193956030948616e-09, 6.6385177020873936e-09, 7.1149871036747246e-09, 7.6256543640065002e-09, 8.1729739818162108e-09, 8.7595766237102466e-09, 9.3882817683459585e-09, 1.0062111258126461e-08, 1.0784303823547572e-08, 1.1558330650007036e-08, 1.2387912061897477e-08, 1.327703540417492e-08, 1.4229974207349449e-08, 1.5251308728013153e-08, 1.6345947963632739e-08, 1.7519153247420665e-08, 1.8776563536691917e-08, 2.0124222516253122e-08, 2.1568607647095575e-08, 2.3116661300014301e-08, 2.4775824123794954e-08, 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0.0026406470361854894, 0.0028790350070911014, 0.0031498962816379574, 0.0034599844658024181, 0.0038176780114803693, 0.0042333498820968001, 0.0047198081307679614, 0.005292817018815189, 0.0059717085364610579, 0.006780094095394173, 0.0077466856457448392, 0.0089062344196623056, 0.010300593805646121, 0.011979910395755636, 0.014003943909573583, 0.016443512383578919, 0.019382053641958212, 0.022917287584879181, 0.02716295623449011, 0.032250609812321827, 0.038331397494215047, 0.045577811085975639, 0.054185318955110445, 0.064373816502855674, 0.076388808721613438, 0.090502230502459868, 0.10701280196511165, 0.12624580987603221, 0.14855220294198343, 0.17430688917437917, 0.20390612835048508, 0.23776392252153089, 0.2763073230915839, 0.31997059460503657, 0.36918820320739754, 0.42438663168964214, 0.48597506268721224, 0.522350703634044, 0.5955291389167735, 0.6759485651655683, 0.7638253842040637, 0.859299039127604, 0.9624193971631568, 1.0731346331486185, 1.1912800172729123, 1.316568030374593, 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0.5955291389147009, 0.5223507036321636, 0.4561326438166176, 0.3965426703361774, 0.3432088686496009, 0.29573101836450144, 0.253690998758353, 0.2166621457713881, 0.18421747446261302, 0.15593672553809704, 0.13141223420945092, 0.11025365357471477, 0.09209159253020996, 0.07658024982610301, 0.06339914144306752, 0.05225402838291559, 0.04287715678879646, 0.03502692271117899, 0.028487070550527283, 0.023065527994403548, 0.01859297186842219] - -// Average timing probability distribution from dark box tests at Berkeley -// Transit time spread sigma of prompt peak is 0.965 ns -// Late ratio is 8.12% -time_prob : [1.0295684447093295e-05, 1.0005440907763509e-05, 8.65327990079723e-06, 7.441897347036223e-06, 5.404665894004633e-06, 6.443874493762297e-06, 4.903564204108379e-06, 3.5132191231600398e-06, 3.294005009220272e-06, 3.1786166611446467e-06, 2.799724330627926e-06, 2.6679249855892243e-06, 3.21449964055082e-06, 3.715800513208914e-06, 4.328261609614684e-06, 6.09486088899795e-06, 4.901672621496921e-06, 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3.12185053544e-05 , 3.01656342821e-05 , 2.91674396387e-05 , 2.82174683902e-05 , 2.73103280014e-05 , 2.64415158715e-05 , 2.56072731531e-05 , 2.48044601196e-05 , 2.40304504477e-05 , 2.32830419904e-05 , 2.25603818355e-05 , 2.18609036625e-05 , 2.11832756276e-05 , 2.05263572038e-05 , 1.98891636022e-05 , 1.92708365702e-05 , 1.86706205306e-05 , 1.80878431656e-05 , 1.75218996864e-05 , 1.69722401389e-05 , 1.64383592013e-05 , 1.59197880153e-05 , 1.54160876711e-05 , 1.49268440279e-05 , 1.44516636111e-05 , 1.39901703719e-05 ] } -// Values based on hamamatsu spec + +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of promt peak is 1.211 ns +// Late ratio of 7.36% { name: "PMTTRANSIT", index: "r7081_hqe", valid_begin : [0, 0], valid_end : [0, 0], cable_delay: 0.0, -time : [-20.0 , -19.9 , -19.8 , -19.7 , -19.6 , -19.5 , -19.4 , -19.3 , -19.2 , -19.1 , -19.0 , -18.9 , -18.8 , -18.7 , -18.6 , -18.5 , -18.4 , -18.3 , -18.2 , -18.1 , -18.0 , -17.9 , -17.8 , -17.7 , -17.6 , -17.5 , -17.4 , -17.3 , -17.2 , -17.1 , -17.0 , -16.9 , -16.8 , -16.7 , -16.6 , -16.5 , -16.4 , -16.3 , -16.2 , -16.1 , -16.0 , -15.9 , -15.8 , -15.7 , -15.6 , -15.5 , -15.4 , -15.3 , -15.2 , -15.1 , -15.0 , -14.9 , -14.8 , -14.7 , -14.6 , -14.5 , -14.4 , -14.3 , -14.2 , -14.1 , -14.0 , -13.9 , -13.8 , -13.7 , -13.6 , -13.5 , -13.4 , -13.3 , -13.2 , -13.1 , -13.0 , -12.9 , -12.8 , -12.7 , -12.6 , -12.5 , -12.4 , -12.3 , -12.2 , -12.1 , -12.0 , -11.9 , -11.8 , -11.7 , -11.6 , -11.5 , -11.4 , -11.3 , -11.2 , -11.1 , -11.0 , -10.9 , -10.8 , -10.7 , -10.6 , -10.5 , -10.4 , -10.3 , -10.2 , -10.1 , -10.0 , -9.9 , -9.8 , -9.7 , -9.6 , -9.5 , -9.4 , -9.3 , -9.2 , -9.1 , -9.0 , -8.9 , -8.8 , -8.7 , -8.6 , -8.5 , -8.4 , -8.3 , -8.2 , -8.1 , -8.0 , -7.9 , -7.8 , -7.7 , -7.6 , -7.5 , -7.4 , -7.3 , -7.2 , -7.1 , -7.0 , -6.9 , -6.8 , -6.7 , -6.6 , -6.5 , -6.4 , -6.3 , -6.2 , -6.1 , -6.0 , -5.9 , -5.8 , -5.7 , -5.6 , -5.5 , -5.4 , -5.3 , -5.2 , -5.1 , -5.0 , -4.9 , -4.8 , -4.7 , -4.6 , -4.5 , -4.4 , -4.3 , -4.2 , -4.1 , -4.0 , -3.9 , -3.8 , -3.7 , -3.6 , -3.5 , -3.4 , -3.3 , -3.2 , -3.1 , -3.0 , -2.9 , -2.8 , -2.7 , -2.6 , -2.5 , -2.4 , -2.3 , -2.2 , -2.1 , -2.0 , -1.9 , -1.8 , -1.7 , -1.6 , -1.5 , -1.4 , -1.3 , -1.2 , -1.1 , -1.0 , -0.9 , -0.8 , -0.7 , -0.6 , -0.5 , -0.4 , -0.3 , -0.2 , -0.1 , 0.0 , 0.1 , 0.2 , 0.3 , 0.4 , 0.5 , 0.6 , 0.7 , 0.8 , 0.9 , 1.0 , 1.1 , 1.2 , 1.3 , 1.4 , 1.5 , 1.6 , 1.7 , 1.8 , 1.9 , 2.0 , 2.1 , 2.2 , 2.3 , 2.4 , 2.5 , 2.6 , 2.7 , 2.8 , 2.9 , 3.0 , 3.1 , 3.2 , 3.3 , 3.4 , 3.5 , 3.6 , 3.7 , 3.8 , 3.9 , 4.0 , 4.1 , 4.2 , 4.3 , 4.4 , 4.5 , 4.6 , 4.7 , 4.8 , 4.9 , 5.0 , 5.1 , 5.2 , 5.3 , 5.4 , 5.5 , 5.6 , 5.7 , 5.8 , 5.9 , 6.0 , 6.1 , 6.2 , 6.3 , 6.4 , 6.5 , 6.6 , 6.7 , 6.8 , 6.9 , 7.0 , 7.1 , 7.2 , 7.3 , 7.4 , 7.5 , 7.6 , 7.7 , 7.8 , 7.9 , 8.0 , 8.1 , 8.2 , 8.3 , 8.4 , 8.5 , 8.6 , 8.7 , 8.8 , 8.9 , 9.0 , 9.1 , 9.2 , 9.3 , 9.4 , 9.5 , 9.6 , 9.7 , 9.8 , 9.9 , 10.0 , 10.1 , 10.2 , 10.3 , 10.4 , 10.5 , 10.6 , 10.7 , 10.8 , 10.9 , 11.0 , 11.1 , 11.2 , 11.3 , 11.4 , 11.5 , 11.6 , 11.7 , 11.8 , 11.9 , 12.0 , 12.1 , 12.2 , 12.3 , 12.4 , 12.5 , 12.6 , 12.7 , 12.8 , 12.9 , 13.0 , 13.1 , 13.2 , 13.3 , 13.4 , 13.5 , 13.6 , 13.7 , 13.8 , 13.9 , 14.0 , 14.1 , 14.2 , 14.3 , 14.4 , 14.5 , 14.6 , 14.7 , 14.8 , 14.9 , 15.0 , 15.1 , 15.2 , 15.3 , 15.4 , 15.5 , 15.6 , 15.7 , 15.8 , 15.9 , 16.0 , 16.1 , 16.2 , 16.3 , 16.4 , 16.5 , 16.6 , 16.7 , 16.8 , 16.9 , 17.0 , 17.1 , 17.2 , 17.3 , 17.4 , 17.5 , 17.6 , 17.7 , 17.8 , 17.9 , 18.0 , 18.1 , 18.2 , 18.3 , 18.4 , 18.5 , 18.6 , 18.7 , 18.8 , 18.9 , 19.0 , 19.1 , 19.2 , 19.3 , 19.4 , 19.5 , 19.6 , 19.7 , 19.8 , 19.9 , 20.0 , 20.1 , 20.2 , 20.3 , 20.4 , 20.5 , 20.6 , 20.7 , 20.8 , 20.9 , 21.0 , 21.1 , 21.2 , 21.3 , 21.4 , 21.5 , 21.6 , 21.7 , 21.8 , 21.9 , 22.0 , 22.1 , 22.2 , 22.3 , 22.4 , 22.5 , 22.6 , 22.7 , 22.8 , 22.9 , 23.0 , 23.1 , 23.2 , 23.3 , 23.4 , 23.5 , 23.6 , 23.7 , 23.8 , 23.9 , 24.0 , 24.1 , 24.2 , 24.3 , 24.4 , 24.5 , 24.6 , 24.7 , 24.8 , 24.9 , 25.0 , 25.1 , 25.2 , 25.3 , 25.4 , 25.5 , 25.6 , 25.7 , 25.8 , 25.9 , 26.0 , 26.1 , 26.2 , 26.3 , 26.4 , 26.5 , 26.6 , 26.7 , 26.8 , 26.9 , 27.0 , 27.1 , 27.2 , 27.3 , 27.4 , 27.5 , 27.6 , 27.7 , 27.8 , 27.9 , 28.0 , 28.1 , 28.2 , 28.3 , 28.4 , 28.5 , 28.6 , 28.7 , 28.8 , 28.9 , 29.0 , 29.1 , 29.2 , 29.3 , 29.4 , 29.5 , 29.6 , 29.7 , 29.8 , 29.9 , 30.0 , 30.1 , 30.2 , 30.3 , 30.4 , 30.5 , 30.6 , 30.7 , 30.8 , 30.9 , 31.0 , 31.1 , 31.2 , 31.3 , 31.4 , 31.5 , 31.6 , 31.7 , 31.8 , 31.9 , 32.0 , 32.1 , 32.2 , 32.3 , 32.4 , 32.5 , 32.6 , 32.7 , 32.8 , 32.9 , 33.0 , 33.1 , 33.2 , 33.3 , 33.4 , 33.5 , 33.6 , 33.7 , 33.8 , 33.9 , 34.0 , 34.1 , 34.2 , 34.3 , 34.4 , 34.5 , 34.6 , 34.7 , 34.8 , 34.9 , 35.0 , 35.1 , 35.2 , 35.3 , 35.4 , 35.5 , 35.6 , 35.7 , 35.8 , 35.9 , 36.0 , 36.1 , 36.2 , 36.3 , 36.4 , 36.5 , 36.6 , 36.7 , 36.8 , 36.9 , 37.0 , 37.1 , 37.2 , 37.3 , 37.4 , 37.5 , 37.6 , 37.7 , 37.8 , 37.9 , 38.0 , 38.1 , 38.2 , 38.3 , 38.4 , 38.5 , 38.6 , 38.7 , 38.8 , 38.9 , 39.0 , 39.1 , 39.2 , 39.3 , 39.4 , 39.5 , 39.6 , 39.7 , 39.8 , 39.9 , 40.0 , 40.1 , 40.2 , 40.3 , 40.4 , 40.5 , 40.6 , 40.7 , 40.8 , 40.9 , 41.0 , 41.1 , 41.2 , 41.3 , 41.4 , 41.5 , 41.6 , 41.7 , 41.8 , 41.9 , 42.0 , 42.1 , 42.2 , 42.3 , 42.4 , 42.5 , 42.6 , 42.7 , 42.8 , 42.9 , 43.0 , 43.1 , 43.2 , 43.3 , 43.4 , 43.5 , 43.6 , 43.7 , 43.8 , 43.9 , 44.0 , 44.1 , 44.2 , 44.3 , 44.4 , 44.5 , 44.6 , 44.7 , 44.8 , 44.9 , 45.0 , 45.1 , 45.2 , 45.3 , 45.4 , 45.5 , 45.6 , 45.7 , 45.8 , 45.9 , 46.0 , 46.1 , 46.2 , 46.3 , 46.4 , 46.5 , 46.6 , 46.7 , 46.8 , 46.9 , 47.0 , 47.1 , 47.2 , 47.3 , 47.4 , 47.5 , 47.6 , 47.7 , 47.8 , 47.9 , 48.0 , 48.1 , 48.2 , 48.3 , 48.4 , 48.5 , 48.6 , 48.7 , 48.8 , 48.9 , 49.0 , 49.1 , 49.2 , 49.3 , 49.4 , 49.5 , 49.6 , 49.7 , 49.8 , 49.9 , 50.0 , 50.1 , 50.2 , 50.3 , 50.4 , 50.5 , 50.6 , 50.7 , 50.8 , 50.9 , 51.0 , 51.1 , 51.2 , 51.3 , 51.4 , 51.5 , 51.6 , 51.7 , 51.8 , 51.9 , 52.0 , 52.1 , 52.2 , 52.3 , 52.4 , 52.5 , 52.6 , 52.7 , 52.8 , 52.9 , 53.0 , 53.1 , 53.2 , 53.3 , 53.4 , 53.5 , 53.6 , 53.7 , 53.8 , 53.9 , 54.0 , 54.1 , 54.2 , 54.3 , 54.4 , 54.5 , 54.6 , 54.7 , 54.8 , 54.9 , 55.0 , 55.1 , 55.2 , 55.3 , 55.4 , 55.5 , 55.6 , 55.7 , 55.8 , 55.9 , 56.0 , 56.1 , 56.2 , 56.3 , 56.4 , 56.5 , 56.6 , 56.7 , 56.8 , 56.9 , 57.0 , 57.1 , 57.2 , 57.3 , 57.4 , 57.5 , 57.6 , 57.7 , 57.8 , 57.9 , 58.0 , 58.1 , 58.2 , 58.3 , 58.4 , 58.5 , 58.6 , 58.7 , 58.8 , 58.9 , 59.0 , 59.1 , 59.2 , 59.3 , 59.4 , 59.5 , 59.6 , 59.7 , 59.8 , 59.9 , 60.0 , 60.1 , 60.2 , 60.3 , 60.4 , 60.5 , 60.6 , 60.7 , 60.8 , 60.9 , 61.0 , 61.1 , 61.2 , 61.3 , 61.4 , 61.5 , 61.6 , 61.7 , 61.8 , 61.9 , 62.0 , 62.1 , 62.2 , 62.3 , 62.4 , 62.5 , 62.6 , 62.7 , 62.8 , 62.9 , 63.0 , 63.1 , 63.2 , 63.3 , 63.4 , 63.5 , 63.6 , 63.7 , 63.8 , 63.9 , 64.0 , 64.1 , 64.2 , 64.3 , 64.4 , 64.5 , 64.6 , 64.7 , 64.8 , 64.9 , 65.0 , 65.1 , 65.2 , 65.3 , 65.4 , 65.5 , 65.6 , 65.7 , 65.8 , 65.9 , 66.0 , 66.1 , 66.2 , 66.3 , 66.4 , 66.5 , 66.6 , 66.7 , 66.8 , 66.9 , 67.0 , 67.1 , 67.2 , 67.3 , 67.4 , 67.5 , 67.6 , 67.7 , 67.8 , 67.9 , 68.0 , 68.1 , 68.2 , 68.3 , 68.4 , 68.5 , 68.6 , 68.7 , 68.8 , 68.9 , 69.0 , 69.1 , 69.2 , 69.3 , 69.4 , 69.5 , 69.6 , 69.7 , 69.8 , 69.9 , 70.0 , 70.1 , 70.2 , 70.3 , 70.4 , 70.5 , 70.6 , 70.7 , 70.8 , 70.9 , 71.0 , 71.1 , 71.2 , 71.3 , 71.4 , 71.5 , 71.6 , 71.7 , 71.8 , 71.9 , 72.0 , 72.1 , 72.2 , 72.3 , 72.4 , 72.5 , 72.6 , 72.7 , 72.8 , 72.9 , 73.0 , 73.1 , 73.2 , 73.3 , 73.4 , 73.5 , 73.6 , 73.7 , 73.8 , 73.9 , 74.0 , 74.1 , 74.2 , 74.3 , 74.4 , 74.5 , 74.6 , 74.7 , 74.8 , 74.9 , 75.0 , 75.1 , 75.2 , 75.3 , 75.4 , 75.5 , 75.6 , 75.7 , 75.8 , 75.9 , 76.0 , 76.1 , 76.2 , 76.3 , 76.4 , 76.5 , 76.6 , 76.7 , 76.8 , 76.9 , 77.0 , 77.1 , 77.2 , 77.3 , 77.4 , 77.5 , 77.6 , 77.7 , 77.8 , 77.9 , 78.0 , 78.1 , 78.2 , 78.3 , 78.4 , 78.5 , 78.6 , 78.7 , 78.8 , 78.9 , 79.0 , 79.1 , 79.2 , 79.3 , 79.4 , 79.5 , 79.6 , 79.7 , 79.8 , 79.9], -// Old distribution -//time_prob : [ 4.93629671886e-15 , 5.32612775326e-15 , 5.74612024813e-15 , 6.19855772134e-15 , 6.68589263156e-15 , 7.21075857257e-15 , 7.77598332464e-15 , 8.38460282169e-15 , 9.0398760965e-15 , 9.74530127072e-15 , 1.05046326604e-14 , 1.13218990728e-14 , 1.2201423375e-14 , 1.31478434201e-14 , 1.41661344225e-14 , 1.52616328797e-14 , 1.64400621445e-14 , 1.77075597577e-14 , 1.90707066591e-14 , 2.05365584029e-14 , 2.21126785094e-14 , 2.38071740956e-14 , 2.56287339366e-14 , 2.7586669117e-14 , 2.96909564441e-14 , 3.19522848056e-14 , 3.43821046631e-14 , 3.69926808899e-14 , 3.979714917e-14 , 4.28095761919e-14 , 4.6045023884e-14 , 4.95196179556e-14 , 5.32506210214e-14 , 5.72565106085e-14 , 6.15570623591e-14 , 6.61734387668e-14 , 7.11282838003e-14 , 7.64458237945e-14 , 8.21519750098e-14 , 8.82744582863e-14 , 9.48429212461e-14 , 1.01889068525e-13 , 1.0944680054e-13 , 1.17552361343e-13 , 1.26244496125e-13 , 1.35564618987e-13 , 1.45556991619e-13 , 1.56268913588e-13 , 1.67750924934e-13 , 1.80057021878e-13 , 1.9324488644e-13 , 2.07376130833e-13 , 2.22516557571e-13 , 2.38736436239e-13 , 2.56110797984e-13 , 2.74719748796e-13 , 2.94648802761e-13 , 3.15989236494e-13 , 3.38838466063e-13 , 3.63300447783e-13 , 3.89486104326e-13 , 4.17513777702e-13 , 4.47509710739e-13 , 4.79608558793e-13 , 5.13953933516e-13 , 5.50698980627e-13 , 5.90006993718e-13 , 6.32052066295e-13 , 6.7701978432e-13 , 7.25107961718e-13 , 7.7652742143e-13 , 8.31502824781e-13 , 8.90273552119e-13 , 9.53094637985e-13 , 1.02023776435e-12 , 1.09199231605e-12 , 1.16866650327e-12 , 1.25058855732e-12 , 1.33810800815e-12 , 1.43159705604e-12 , 1.53145205668e-12 , 1.63809515137e-12 , 1.75197609543e-12 , 1.87357437608e-12 , 2.00340177823e-12 , 2.14200567318e-12 , 2.2899735086e-12 , 2.44793932912e-12 , 2.61659375956e-12 , 2.79669991188e-12 , 2.98911942315e-12 , 3.19485577657e-12 , 3.41512699331e-12 , 3.65148800378e-12 , 3.90603661558e-12 , 4.1817593792e-12 , 4.483110241e-12 , 4.81697429981e-12 , 5.19426489188e-12 , 5.63255602565e-12 , 6.16039722816e-12 , 6.82434576285e-12 , 7.70036122894e-12 , 8.91216072039e-12 , 1.06606122001e-11 , 1.32705249533e-11 , 1.72646899532e-11 , 2.3480338537e-11 , 3.32512199881e-11 , 4.86905531234e-11 , 7.31280737521e-11 , 1.11780992951e-10 , 1.7277776671e-10 , 2.68710618104e-10 , 4.18975401939e-10 , 6.53276290266e-10 , 1.01684252439e-09 , 1.57814510299e-09 , 2.4402397681e-09 , 3.75733518735e-09 , 5.75883978294e-09 , 8.78404019409e-09 , 1.33317906475e-08 , 2.01312505548e-08 , 3.02419307123e-08 , 4.51942635487e-08 , 6.71858064634e-08 , 9.93532710884e-08 , 1.46147147206e-07 , 2.13844113846e-07 , 3.1124311283e-07 , 4.50604365663e-07 , 6.48907252611e-07 , 9.29523383092e-07 , 1.32442591639e-06 , 1.87708575976e-06 , 2.64624011835e-06 , 3.71075929708e-06 , 5.17588373063e-06 , 7.18115469268e-06 , 9.9104183083e-06 , 1.36043420866e-05 , 1.85759441979e-05 , 2.52296952574e-05 , 3.40848065481e-05 , 4.58033623737e-05 , 6.12239813087e-05 , 8.1401694008e-05 , 0.00010765469523 , 0.00014161855513 , 0.000185308349252 , 0.000241188977309 , 0.000312253677574 , 0.00040211039729 , 0.000515075243216 , 0.000656271706546 , 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0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] } + // Values based on 100 picosecond timing resolution { name: "PMTTRANSIT", From 0bb76a454e7ca8cc26424515d0285b97e62f0604 Mon Sep 17 00:00:00 2001 From: James Shen Date: Fri, 12 Jul 2024 15:15:56 -0400 Subject: [PATCH 009/103] allow producer to be added by ratpac experiments --- src/core/src/ProducerBlock.cc | 3 +++ src/ratbase/include/RAT/Rat.hh | 2 ++ src/ratbase/src/Rat.cc | 6 +----- 3 files changed, 6 insertions(+), 5 deletions(-) diff --git a/src/core/src/ProducerBlock.cc b/src/core/src/ProducerBlock.cc index 1d199125..e97e78f5 100644 --- a/src/core/src/ProducerBlock.cc +++ b/src/core/src/ProducerBlock.cc @@ -15,6 +15,9 @@ ProducerBlock::~ProducerBlock() { Clear(); } void ProducerBlock::Init(ProcBlock *theMainBlock) { mainBlock = theMainBlock; + for (Producer *p : fProducerList) { + p->SetMainBlock(mainBlock); + } AppendProducer(); AppendProducer(); AppendProducer(); diff --git a/src/ratbase/include/RAT/Rat.hh b/src/ratbase/include/RAT/Rat.hh index 0bc5bd44..c0fd902d 100644 --- a/src/ratbase/include/RAT/Rat.hh +++ b/src/ratbase/include/RAT/Rat.hh @@ -5,6 +5,7 @@ #include #include #include +#include #include #include @@ -26,6 +27,7 @@ class Rat { DB *rdb; DBMessenger *rdb_messenger; RatMessenger *rat_messenger; + ProducerBlock prodBlock; public: inline static std::set ratdb_directories = {}; diff --git a/src/ratbase/src/Rat.cc b/src/ratbase/src/Rat.cc index d00d7c80..5aa4f40b 100644 --- a/src/ratbase/src/Rat.cc +++ b/src/ratbase/src/Rat.cc @@ -15,7 +15,6 @@ #include #include #include -#include #include #include #include @@ -140,10 +139,8 @@ void Rat::Begin() { info << "Setting default vector file to " << this->vector_filename << newline; } - // Build event producers - ProducerBlock *prodBlock = new ProducerBlock(); // Main analysis block - ProcBlock *mainBlock = new ProcBlock(prodBlock); + ProcBlock *mainBlock = new ProcBlock(&prodBlock); // Process block manager -- supplies user commands to construct analyis // sequence and does the processor creation ProcBlockManager *blockManager = new ProcBlockManager(mainBlock); @@ -184,7 +181,6 @@ void Rat::Begin() { delete blockManager; delete mainBlock; - delete prodBlock; delete rdb_messenger; delete trackingMessenger; } catch (DBNotFoundError &e) { From 02df1475f1afe7808f9df317fc99b0ca38061d63 Mon Sep 17 00:00:00 2001 From: James Shen Date: Mon, 15 Jul 2024 03:02:10 -0400 Subject: [PATCH 010/103] Guard against case where there's zero MC particle --- src/io/src/OutNtupleProc.cc | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index fd08785e..284883ac 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -203,14 +203,14 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { mcTime.push_back(particle->GetTime()); } // First particle's position, direction, and time - mcpdg = pdgcodes[0]; - mcx = mcPosx[0]; - mcy = mcPosy[0]; - mcz = mcPosz[0]; - mcu = mcDirx[0]; - mcv = mcDiry[0]; - mcw = mcDirz[0]; - mct = mcTime[0]; + mcpdg = mcpcount ? pdgcodes[0] : -9999; + mcx = mcpcount ? mcPosx[0] : -9999; + mcy = mcpcount ? mcPosy[0] : -9999; + mcz = mcpcount ? mcPosz[0] : -9999; + mcu = mcpcount ? mcDirx[0] : -9999; + mcv = mcpcount ? mcDiry[0] : -9999; + mcw = mcpcount ? mcDirz[0] : -9999; + mct = mcpcount ? mcTime[0] : -9999; mcke = accumulate(mcKEnergies.begin(), mcKEnergies.end(), 0.0); // Tracking if (options.tracking) { From caced3230156aaf785baae79d0eb35788fa5c830 Mon Sep 17 00:00:00 2001 From: James Shen Date: Mon, 15 Jul 2024 03:03:09 -0400 Subject: [PATCH 011/103] Refactor and extend waveform analysis to analyze trigger timing --- src/daq/include/RAT/WaveformAnalysis.hh | 14 ++++- src/daq/src/WaveformAnalysis.cc | 80 ++++++++++++++++++------- 2 files changed, 70 insertions(+), 24 deletions(-) diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index 5ec2730a..faab5a0d 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -28,9 +28,11 @@ namespace RAT { class WaveformAnalysis { public: WaveformAnalysis(); + WaveformAnalysis(std::string analyzer_name); virtual ~WaveformAnalysis(){}; void RunAnalysis(DS::DigitPMT *pmt, int pmtID, Digitizer *fDigitizer); + double RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer); // Calculate baseline (in mV) void CalculatePedestal(); @@ -40,7 +42,15 @@ class WaveformAnalysis { // Apply a constant fraction discriminator to // calculate the threshold crossing - double CalculateTime(); + double CalculateTimeCFD(); + + // Calculate the time a threshold crossing occurs, with a linear interpolation + double CalculateThresholdCrossingTime(); + + double CalculateThresholdCrossingTime(double voltage_threshold) { + fVoltageCrossing = voltage_threshold; + return CalculateThresholdCrossingTime(); + } // Find the sample where a threshold crossing occurs void GetThresholdCrossing(); @@ -57,6 +67,8 @@ class WaveformAnalysis { // Integrate the digitized waveform to calculate charge void SlidingIntegral(); + double DigitToVoltage(UShort_t digit) { return (digit - fPedestal) * fVoltageRes; } + protected: // Digitizer settings DBLinkPtr fDigit; diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 390c40d2..21d2975d 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -4,8 +4,10 @@ namespace RAT { -WaveformAnalysis::WaveformAnalysis() { - fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS"); +WaveformAnalysis::WaveformAnalysis() { WaveformAnalysis(""); } + +WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { + fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS", analyzer_name); fPedWindowLow = fDigit->GetI("pedestal_window_low"); fPedWindowHigh = fDigit->GetI("pedestal_window_high"); fLookback = fDigit->GetD("lookback"); @@ -25,7 +27,10 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer CalculatePedestal(); - double digit_time = CalculateTime(); + double digit_time = CalculateTimeCFD(); + + // Get the total number of threshold crossings + GetNCrossings(); fLowIntWindow = int((digit_time - fIntWindowLow) / fTimeStep); fHighIntWindow = int((digit_time + fIntWindowHigh) / fTimeStep); @@ -46,6 +51,33 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer digitpmt->SetPeakVoltage(fVoltagePeak); } +double WaveformAnalysis::RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer) { + fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); + fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns + + fDigitWfm = fDigitizer->fDigitWaveForm[pmtID]; + + CalculatePedestal(); + double trigger_threshold = fThreshold; + double trigger_lookback = fLookback; + try { + trigger_threshold = fDigit->GetD("trigger_voltage_threshold"); + trigger_lookback = fDigit->GetD("trigger_lookback"); + } catch (DBNotFoundError &e) { + warn << "WaveformAnalysis: Trigger threshold and lookback not found in database. " + << "Using the same parameters as PMT Waveforms." << newline; + } + fVoltageRes *= -1; // Invert the voltage since the waveform goes ABOVE threshold when a trigger occurs + trigger_threshold *= -1; + GetPeak(); + // HACK: Store the old lookback value, restore after a trigger time analysis is done. + double old_lookback = fLookback; + fLookback = trigger_lookback; + double trigger_time = CalculateThresholdCrossingTime(trigger_threshold); + fLookback = old_lookback; + return trigger_time; +} + void WaveformAnalysis::CalculatePedestal() { /* Calculate the baseline in the window between low - high samples. @@ -83,7 +115,7 @@ void WaveformAnalysis::GetPeak() { fVoltagePeak = 999; fSamplePeak = -999; for (size_t i = 0; i < fDigitWfm.size(); i++) { - double voltage = (fDigitWfm[i] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[i]); // Downward going pulse if (voltage < fVoltagePeak) { @@ -95,11 +127,9 @@ void WaveformAnalysis::GetPeak() { void WaveformAnalysis::GetThresholdCrossing() { /* - Identifies the sample at which the constant-fraction threshold crossing occurs + Identifies the sample at which threshold crossing occurs */ fThresholdCrossing = 0; - fVoltageCrossing = fConstFrac * fVoltagePeak; - // Make sure we don't scan passed the beginning of the waveform Int_t lb = Int_t(fSamplePeak) - Int_t(fLookback / fTimeStep); UShort_t back_window = (lb > 0) ? lb : 0; @@ -133,7 +163,7 @@ void WaveformAnalysis::GetNCrossings() { bool fCrossed = false; // Scan over the entire waveform for (UShort_t i = 0; i < fDigitWfm.size(); i++) { - double voltage = (fDigitWfm[i] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[i]); // If we crossed below threshold if (voltage < fThreshold) { @@ -153,20 +183,13 @@ void WaveformAnalysis::GetNCrossings() { } } -double WaveformAnalysis::CalculateTime() { +double WaveformAnalysis::CalculateThresholdCrossingTime() { /* - Apply constant-fraction discriminator to digitized PMT waveforms. + Calculate the time a threshold crossing occurs, with a linear interpolation */ - - // Calculate peak in mV - GetPeak(); - // Get the sample where the voltage thresh is crossed GetThresholdCrossing(); - // Get the total number of threshold crossings - GetNCrossings(); - if (fThresholdCrossing == INVALID || fThresholdCrossing >= fDigitWfm.size()) { return INVALID; } @@ -176,13 +199,24 @@ double WaveformAnalysis::CalculateTime() { } // Interpolate between the two samples where the CFD threshold is crossed - double v1 = (fDigitWfm[fThresholdCrossing + 1] - fPedestal) * fVoltageRes; - double v2 = (fDigitWfm[fThresholdCrossing] - fPedestal) * fVoltageRes; + double v1 = DigitToVoltage(fDigitWfm[fThresholdCrossing + 1]); + double v2 = DigitToVoltage(fDigitWfm[fThresholdCrossing]); Interpolate(v1, v2); - double tcdf = double(fThresholdCrossing) * fTimeStep + fInterpolatedTime; + double interpolated_time = double(fThresholdCrossing) * fTimeStep + fInterpolatedTime; + + return interpolated_time; +} + +double WaveformAnalysis::CalculateTimeCFD() { + /* + Apply constant-fraction discriminator to digitized PMT waveforms. + */ - return tcdf; + // Calculate peak in mV + GetPeak(); + fVoltageCrossing = fConstFrac * fVoltagePeak; + return CalculateThresholdCrossingTime(); } void WaveformAnalysis::Integrate() { @@ -202,7 +236,7 @@ void WaveformAnalysis::Integrate() { fLowIntWindow = (fLowIntWindow < 0) ? 0 : fLowIntWindow; for (int i = fLowIntWindow; i < fHighIntWindow; i++) { - double voltage = (fDigitWfm[i] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[i]); fCharge += (-voltage * fTimeStep) / fTermOhms; // in pC } } @@ -219,7 +253,7 @@ void WaveformAnalysis::SlidingIntegral() { int sample_start = i * fSlidingWindow; int sample_end = (i + 1) * fSlidingWindow; for (int j = sample_start; j < sample_end; j++) { - double voltage = (fDigitWfm[j] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[j]); charge += (-voltage * fTimeStep) / fTermOhms; // in pC } if (charge > fChargeThresh) { From 8ca4f62de20ddb8ca3b1295cc247e2dab36e37ac Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 16 Jul 2024 14:56:27 -0400 Subject: [PATCH 012/103] Avoid potentially worlds of trouble by adding two more bytes to each event in Digitizer::pmt_id --- src/daq/include/RAT/Digitizer.hh | 2 +- src/daq/src/Digitizer.cc | 10 +++++----- src/ds/include/RAT/DS/Digit.hh | 25 ++++++++++++------------- 3 files changed, 18 insertions(+), 19 deletions(-) diff --git a/src/daq/include/RAT/Digitizer.hh b/src/daq/include/RAT/Digitizer.hh index d94ea70f..fcf78179 100644 --- a/src/daq/include/RAT/Digitizer.hh +++ b/src/daq/include/RAT/Digitizer.hh @@ -47,7 +47,7 @@ class Digitizer { int fNSamples; // Total number of samples per digitized trace double fTerminationOhms; // Input impedence of digitizer // Channel:Digitized waveform for each channel - std::map> fDigitWaveForm; + std::map> fDigitWaveForm; std::map fPMTWaveformGenerators; diff --git a/src/daq/src/Digitizer.cc b/src/daq/src/Digitizer.cc index c0878467..bc337034 100644 --- a/src/daq/src/Digitizer.cc +++ b/src/daq/src/Digitizer.cc @@ -40,13 +40,13 @@ void Digitizer::DigitizePMT(DS::MCPMT* mcpmt, int pmtID, double triggerTime, DS: void Digitizer::DigitizeSum(DS::EV* ev) { DS::Digit digit; - std::map> waveforms = fDigitWaveForm; - for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { - digit.SetWaveform(UShort_t(it->first), waveforms[UShort_t(it->first)]); + std::map> waveforms = fDigitWaveForm; + for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { + digit.SetWaveform(it->first, waveforms[UShort_t(it->first)]); } digit.SetDigitName(fDigitName); - digit.SetNSamples(UShort_t(fNSamples)); + digit.SetNSamples(uint32_t(fNSamples)); digit.SetNBits(UShort_t(fNBits)); digit.SetDynamicRange((fVhigh - fVlow)); digit.SetSamplingRate(fSamplingRate); @@ -78,7 +78,7 @@ void Digitizer::AddChannel(int ichannel, PMTWaveform pmtwf) { } // Save sample - fDigitWaveForm[UShort_t(ichannel)].push_back(UShort_t(adcs)); + fDigitWaveForm[ichannel].push_back(UShort_t(adcs)); // Step on time currenttime += timeres; diff --git a/src/ds/include/RAT/DS/Digit.hh b/src/ds/include/RAT/DS/Digit.hh index 7d71c1ed..1d95d91e 100644 --- a/src/ds/include/RAT/DS/Digit.hh +++ b/src/ds/include/RAT/DS/Digit.hh @@ -32,8 +32,8 @@ class Digit : public TObject { virtual Double_t GetSamplingRate() const { return sampling_rate; }; // Total number of samples - virtual void SetNSamples(UShort_t _nsamples) { nsamples = _nsamples; }; - virtual UShort_t GetNSamples() const { return nsamples; }; + virtual void SetNSamples(uint32_t _nsamples) { nsamples = _nsamples; }; + virtual uint32_t GetNSamples() const { return nsamples; }; // ADC bits virtual void SetNBits(UShort_t _nbits) { nbits = _nbits; }; @@ -44,24 +44,23 @@ class Digit : public TObject { virtual Double_t GetDynamicRange() const { return dynamic_range; }; /// Set a waveform, overwrites existing - virtual void SetWaveform(const UShort_t waveformID, const std::vector &samples) { + virtual void SetWaveform(const int waveformID, const std::vector &samples) { waveforms[waveformID] = samples; } // Get a map of waveform IDs to digitized waveforms - virtual std::map> GetAllWaveforms() const { return waveforms; } + virtual std::map> GetAllWaveforms() const { return waveforms; } // Get the waveform for a digitizer - virtual std::vector GetWaveform(const UShort_t waveformID) const { return waveforms.at(waveformID); } + virtual std::vector GetWaveform(const int waveformID) const { return waveforms.at(waveformID); } /// Check if a waveform exists - Bool_t ExistsWaveform(const UShort_t waveformID) const { return waveforms.count(waveformID) > 0; } + Bool_t ExistsWaveform(const int waveformID) const { return waveforms.count(waveformID) > 0; } /// Get a list (vector) of all the IDs that are available - std::vector GetIDs() const { - std::vector ret; - for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); - it++) { + std::vector GetIDs() const { + std::vector ret; + for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { ret.push_back(it->first); } return ret; @@ -70,15 +69,15 @@ class Digit : public TObject { /// Delete all waveforms virtual void PruneWaveforms() { waveforms.clear(); } - ClassDef(Digit, 2); + ClassDef(Digit, 3); protected: std::string name; Double_t sampling_rate; - UShort_t nsamples; + uint32_t nsamples; UShort_t nbits; Double_t dynamic_range; - std::map> waveforms; ///< Map of input number to samples + std::map> waveforms; ///< Map of input number to samples }; } // namespace DS From 977827766d0dd6bb9959e1ebdeffa5fba50b6e6a Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 16 Jul 2024 16:01:09 -0400 Subject: [PATCH 013/103] Add Local trigger time to DigitPMT --- src/ds/include/RAT/DS/DigitPMT.hh | 29 +++++++++++++++++------------ 1 file changed, 17 insertions(+), 12 deletions(-) diff --git a/src/ds/include/RAT/DS/DigitPMT.hh b/src/ds/include/RAT/DS/DigitPMT.hh index 0697e016..2de0032c 100644 --- a/src/ds/include/RAT/DS/DigitPMT.hh +++ b/src/ds/include/RAT/DS/DigitPMT.hh @@ -64,20 +64,25 @@ class DigitPMT : public TObject { virtual void SetPeakVoltage(Double_t _peak) { this->peak = _peak; } virtual Double_t GetPeakVoltage() { return peak; } - ClassDef(DigitPMT, 1); + /** Local trigger time at the location of the PMT. Useful for PMT timing corrections */ + virtual void SetLocalTriggerTime(Double_t _trigger_time) { this->local_trigger_time = _trigger_time; } + virtual Double_t GetLocalTriggerTime() { return local_trigger_time; } + + ClassDef(DigitPMT, 2); protected: - Int_t id; - Double_t dTime; - Double_t dCharge; - Double_t dTCharge; - Double_t iTime; - Int_t sTime; - Int_t nCrossings; - Double_t timeOverThresh; - Double_t voltageOverThresh; - Double_t pedestal; - Double_t peak; + Int_t id = -9999; + Double_t dTime = -9999; + Double_t dCharge = -9999; + Double_t dTCharge = -9999; + Double_t iTime = -9999; + Int_t sTime = -9999; + Int_t nCrossings = -9999; + Double_t timeOverThresh = -9999; + Double_t voltageOverThresh = -9999; + Double_t pedestal = -9999; + Double_t peak = -9999; + Double_t local_trigger_time = -9999; }; } // namespace DS From b77cbfd2056bbc613d34f945cf9900a9ef001f36 Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 16 Jul 2024 16:13:06 -0400 Subject: [PATCH 014/103] Add local trigger time to ntuples --- src/io/include/RAT/OutNtupleProc.hh | 1 + src/io/src/OutNtupleProc.cc | 4 ++++ 2 files changed, 5 insertions(+) diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index 72bb6da3..876272dc 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -127,6 +127,7 @@ class OutNtupleProc : public Processor { std::vector hitPMTDigitizedTime; std::vector hitPMTDigitizedCharge; std::vector hitPMTNCrossings; + std::vector hitPMTDigitizedLocalTriggerTime; // Tracking std::map processCodeMap; std::vector processCodeIndex; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 284883ac..27956c58 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -128,6 +128,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("hitPMTDigitizedTime", &hitPMTDigitizedTime); outputTree->Branch("hitPMTDigitizedCharge", &hitPMTDigitizedCharge); outputTree->Branch("hitPMTNCrossings", &hitPMTNCrossings); + outputTree->Branch("hitPMTDigitizedLocalTriggerTime", &hitPMTDigitizedLocalTriggerTime); } if (options.mchits) { // Save full MC PMT hit information @@ -407,6 +408,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTDigitizedTime.clear(); hitPMTDigitizedCharge.clear(); hitPMTNCrossings.clear(); + hitPMTDigitizedLocalTriggerTime.clear(); for (int pmtc = 0; pmtc < ev->GetPMTCount(); pmtc++) { RAT::DS::PMT *pmt = ev->GetPMT(pmtc); @@ -419,6 +421,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTDigitizedTime.push_back(digitpmt->GetDigitizedTime()); hitPMTDigitizedCharge.push_back(digitpmt->GetDigitizedCharge()); hitPMTNCrossings.push_back(digitpmt->GetNCrossings()); + hitPMTDigitizedLocalTriggerTime.push_back(digitpmt->GetLocalTriggerTime()); } } this->FillEvent(ds, ev); @@ -434,6 +437,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTDigitizedTime.clear(); hitPMTDigitizedCharge.clear(); hitPMTNCrossings.clear(); + hitPMTDigitizedLocalTriggerTime.clear(); } this->FillNoTriggerEvent(ds); outputTree->Fill(); From 1c541df9c08fe0a0f1fba5f0e54cb7929612b01f Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 16 Jul 2024 17:29:41 -0400 Subject: [PATCH 015/103] should return invalid when lookback limit is reached --- src/daq/src/WaveformAnalysis.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 21d2975d..1121158e 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -145,7 +145,7 @@ void WaveformAnalysis::GetThresholdCrossing() { // Reached the begining of the waveform // returned an invalid value - if (i == 0) { + if (i == back_window) { fThresholdCrossing = INVALID; break; } From f08ca976956bee449b7bca53a94629ba94df9791 Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 16 Jul 2024 17:52:03 -0400 Subject: [PATCH 016/103] Bump version fo 2.2.0 --- CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 296fd569..76411923 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,5 +1,5 @@ cmake_minimum_required(VERSION 3.11...3.14) -project(ratpac VERSION 2.1.3 +project(ratpac VERSION 2.2.0 DESCRIPTION "RAT-PAC" LANGUAGES C CXX) From e50f0f5efa6aaae4683b540b752d9a292efc687d Mon Sep 17 00:00:00 2001 From: tannerbk Date: Tue, 16 Jul 2024 16:09:34 -0700 Subject: [PATCH 017/103] add lognormal fitting and update ntuple naming --- ratdb/DIGITIZER_ANALYSIS.ratdb | 9 +- ratdb/IO.ratdb | 2 + ratdb/OPTICS_Photocathode.ratdb | 7 +- ratdb/PMTPULSES.ratdb | 4 +- ratdb/PMTTRANSIT.ratdb | 43 +++--- src/core/src/ProducerBlock.cc | 3 + src/daq/include/RAT/Digitizer.hh | 2 +- src/daq/include/RAT/WaveformAnalysis.hh | 32 ++++- src/daq/src/Digitizer.cc | 10 +- src/daq/src/PMTWaveform.cc | 2 +- src/daq/src/PMTWaveformGenerator.cc | 2 +- src/daq/src/WaveformAnalysis.cc | 179 ++++++++++++++++++++---- src/ds/include/RAT/DS/Digit.hh | 25 ++-- src/ds/include/RAT/DS/DigitPMT.hh | 44 ++++-- src/io/include/RAT/OutNtupleProc.hh | 22 ++- src/io/src/OutNtupleProc.cc | 100 ++++++++++--- src/ratbase/include/RAT/Rat.hh | 2 + src/ratbase/src/Rat.cc | 6 +- 18 files changed, 375 insertions(+), 119 deletions(-) diff --git a/ratdb/DIGITIZER_ANALYSIS.ratdb b/ratdb/DIGITIZER_ANALYSIS.ratdb index d27ee146..3a910236 100644 --- a/ratdb/DIGITIZER_ANALYSIS.ratdb +++ b/ratdb/DIGITIZER_ANALYSIS.ratdb @@ -18,5 +18,12 @@ sliding_window_width: 10, sliding_window_thresh: 0.2, // Threshold in mV voltage_threshold: -2.5, -} +run_fitting: 0, +// Fit window, in ns +fit_window_low: 10.0, +fit_window_high: 15.0, +// Fit shape +lognormal_shape: 0.15, +lognormal_scale: 10.5, +} diff --git a/ratdb/IO.ratdb b/ratdb/IO.ratdb index 4144998c..8a040968 100644 --- a/ratdb/IO.ratdb +++ b/ratdb/IO.ratdb @@ -18,6 +18,8 @@ default_output_filename: "output.ntuple.root", include_tracking: false, include_mcparticles: false, include_pmthits: true, +include_digitizerhits: true, +include_digitizerfits: true, include_untriggered_events: true, include_mchits: true, } diff --git a/ratdb/OPTICS_Photocathode.ratdb b/ratdb/OPTICS_Photocathode.ratdb index a1ace555..4deca14a 100644 --- a/ratdb/OPTICS_Photocathode.ratdb +++ b/ratdb/OPTICS_Photocathode.ratdb @@ -263,10 +263,11 @@ valid_begin : [0, 0], valid_end : [0, 0], photocathode: 1, -/*EFFICIENCY_option: "wavelength", -EFFICIENCY_value1: [ 227.0 , 228.0 , 229.0 , 230.0 , 231.0 , 232.0 , 233.0 , 234.0 , 235.0 , 236.0 , 237.0 , 238.0 , 239.0 , 240.0 , 241.0 , 242.0 , 243.0 , 244.0 , 245.0 , 246.0 , 247.0 , 248.0 , 249.0 , 250.0 , 251.0 , 252.0 , 253.0 , 254.0 , 255.0 , 256.0 , 257.0 , 258.0 , 259.0 , 260.0 , 261.0 , 262.0 , 263.0 , 264.0 , 265.0 , 266.0 , 267.0 , 268.0 , 269.0 , 270.0 , 271.0 , 272.0 , 273.0 , 274.0 , 275.0 , 276.0 , 277.0 , 278.0 , 279.0 , 280.0 , 281.0 , 282.0 , 283.0 , 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632.0 , 633.0 , 634.0 , 635.0 , 636.0 , 637.0 , 638.0 , 639.0 , 640.0 , 641.0 , 642.0 , 643.0 , 644.0 , 645.0 , 646.0 , 647.0 , 648.0 , 649.0 , 650.0 , 651.0 , 652.0 , 653.0 , 654.0 , 655.0 , 656.0 , 657.0 , 658.0 , 659.0 , 660.0 , 661.0 , 662.0 , 663.0 , 664.0 , 665.0 , 666.0 , 667.0 , 668.0 , 669.0 , 670.0 , 671.0 , 672.0 , 673.0 , 674.0 , 675.0 , 676.0 , 677.0 , 678.0 , 679.0 , 680.0 , 681.0 , 682.0 , 683.0 , 684.0 , 685.0 , 686.0 , 687.0 , 688.0 , 689.0 , 690.0 , 691.0 , 692.0 , 693.0 , 694.0 , 695.0 , 696.0 , ], +//EFFICIENCY_value2: [ 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.00251 , 0.00502 , 0.00753 , 0.01004 , 0.01255 , 0.01506 , 0.01757 , 0.02008 , 0.02259 , 0.0251 , 0.02761 , 0.03012 , 0.03263 , 0.03514 , 0.03765 , 0.04016 , 0.04267 , 0.04518 , 0.04769 , 0.0502 , 0.057775 , 0.06535 , 0.072925 , 0.0805 , 0.088075 , 0.09565 , 0.103225 , 0.1108 , 0.118375 , 0.12595 , 0.133525 , 0.1411 , 0.148675 , 0.15625 , 0.163825 , 0.1714 , 0.178975 , 0.18655 , 0.194125 , 0.2017 , 0.20628 , 0.21086 , 0.21544 , 0.22002 , 0.2246 , 0.22918 , 0.23376 , 0.23834 , 0.24292 , 0.2475 , 0.25208 , 0.25666 , 0.26124 , 0.26582 , 0.2704 , 0.27498 , 0.27956 , 0.28414 , 0.28872 , 0.2933 , 0.295165 , 0.29703 , 0.298895 , 0.30076 , 0.302625 , 0.30449 , 0.306355 , 0.30822 , 0.310085 , 0.31195 , 0.313815 , 0.31568 , 0.317545 , 0.31941 , 0.321275 , 0.32314 , 0.325005 , 0.32687 , 0.328735 , 0.3306 , 0.33105 , 0.3315 , 0.33195 , 0.3324 , 0.33285 , 0.3333 , 0.33375 , 0.3342 , 0.33465 , 0.3351 , 0.33555 , 0.336 , 0.33645 , 0.3369 , 0.33735 , 0.3378 , 0.33825 , 0.3387 , 0.33915 , 0.3396 , 0.33922 , 0.33884 , 0.33846 , 0.33808 , 0.3377 , 0.33732 , 0.33694 , 0.33656 , 0.33618 , 0.3358 , 0.33542 , 0.33504 , 0.33466 , 0.33428 , 0.3339 , 0.33352 , 0.33314 , 0.33276 , 0.33238 , 0.332 , 0.33124 , 0.33048 , 0.32972 , 0.32896 , 0.3282 , 0.32744 , 0.32668 , 0.32592 , 0.32516 , 0.3244 , 0.32364 , 0.32288 , 0.32212 , 0.32136 , 0.3206 , 0.31984 , 0.31908 , 0.31832 , 0.31756 , 0.3168 , 0.315535 , 0.31427 , 0.313005 , 0.31174 , 0.310475 , 0.30921 , 0.307945 , 0.30668 , 0.305415 , 0.30415 , 0.302885 , 0.30162 , 0.300355 , 0.29909 , 0.297825 , 0.29656 , 0.295295 , 0.29403 , 0.292765 , 0.2915 , 0.2902 , 0.2889 , 0.2876 , 0.2863 , 0.285 , 0.2837 , 0.2824 , 0.2811 , 0.2798 , 0.2785 , 0.2772 , 0.2759 , 0.2746 , 0.2733 , 0.272 , 0.2707 , 0.2694 , 0.2681 , 0.2668 , 0.2655 , 0.263565 , 0.26163 , 0.259695 , 0.25776 , 0.255825 , 0.25389 , 0.251955 , 0.25002 , 0.248085 , 0.24615 , 0.244215 , 0.24228 , 0.240345 , 0.23841 , 0.236475 , 0.23454 , 0.232605 , 0.23067 , 0.228735 , 0.2268 , 0.225315 , 0.22383 , 0.222345 , 0.22086 , 0.219375 , 0.21789 , 0.216405 , 0.21492 , 0.213435 , 0.21195 , 0.210465 , 0.20898 , 0.207495 , 0.20601 , 0.204525 , 0.20304 , 0.201555 , 0.20007 , 0.198585 , 0.1971 , 0.19545 , 0.1938 , 0.19215 , 0.1905 , 0.18885 , 0.1872 , 0.18555 , 0.1839 , 0.18225 , 0.1806 , 0.17895 , 0.1773 , 0.17565 , 0.174 , 0.17235 , 0.1707 , 0.16905 , 0.1674 , 0.16575 , 0.1641 , 0.161405 , 0.15871 , 0.156015 , 0.15332 , 0.150625 , 0.14793 , 0.145235 , 0.14254 , 0.139845 , 0.13715 , 0.134455 , 0.13176 , 0.129065 , 0.12637 , 0.123675 , 0.12098 , 0.118285 , 0.11559 , 0.112895 , 0.1102 , 0.108325 , 0.10645 , 0.104575 , 0.1027 , 0.100825 , 0.09895 , 0.097075 , 0.0952 , 0.093325 , 0.09145 , 0.089575 , 0.0877 , 0.085825 , 0.08395 , 0.082075 , 0.0802 , 0.078325 , 0.07645 , 0.074575 , 0.0727 , 0.07156 , 0.07042 , 0.06928 , 0.06814 , 0.067 , 0.06586 , 0.06472 , 0.06358 , 0.06244 , 0.0613 , 0.06016 , 0.05902 , 0.05788 , 0.05674 , 0.0556 , 0.05446 , 0.05332 , 0.05218 , 0.05104 , 0.0499 , 0.04902 , 0.04814 , 0.04726 , 0.04638 , 0.0455 , 0.04462 , 0.04374 , 0.04286 , 0.04198 , 0.0411 , 0.04022 , 0.03934 , 0.03846 , 0.03758 , 0.0367 , 0.03582 , 0.03494 , 0.03406 , 0.03318 , 0.0323 , 0.031575 , 0.03085 , 0.030125 , 0.0294 , 0.028675 , 0.02795 , 0.027225 , 0.0265 , 0.025775 , 0.02505 , 0.024325 , 0.0236 , 0.022875 , 0.02215 , 0.021425 , 0.0207 , 0.019975 , 0.01925 , 0.018525 , 0.0178 , 0.017215 , 0.01663 , 0.016045 , 0.01546 , 0.014875 , 0.01429 , 0.013705 , 0.01312 , 0.012535 , 0.01195 , 0.011365 , 0.01078 , 0.010195 , 0.00961 , 0.009025 , 0.00844 , 0.007855 , 0.00727 , 0.006685 , 0.0061 , 0.005795 , 0.00549 , 0.005185 , 0.00488 , 0.004575 , 0.00427 , 0.003965 , 0.00366 , 0.003355 , 0.00305 , 0.002745 , 0.00244 , 0.002135 , 0.00183 , 0.001525 , 0.00122 , 0.000915 , 0.00061 , 0.000305 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , 0.0 , ], +// From the R7081-100 datasheet EFFICIENCY_option: "wavelength", EFFICIENCY_value1: [270.283, 275.527, 280.764, 287.476, 295.659, 303.816, 315.642, 330.401, 350.31, 371.686, 393.06, 413.696, 434.327, 463.797, 480.738, 497.68, 517.57, 533.03, 541.117, 553.624, 567.611, 582.334, 595.581, 610.299, 623.539, 636.774, 646.328, 657.349, 667.627, 676.435, 684.506, 692.57, 699.171, 706.502, 715.301, 721.164, 725.565, ], EFFICIENCY_value2: [0.00221339, 0.00614939, 0.0154922, 0.0394553, 0.0972569, 0.17491, 0.258638, 0.317895, 0.346656, 0.346522, 0.338938, 0.327939, 0.297261, 0.249668, 0.216696, 0.190134, 0.165016, 0.129877, 0.101129, 0.0762112, 0.0613027, 0.0487768, 0.0379766, 0.0286182, 0.0204256, 0.013807, 0.00985503, 0.00637843, 0.00390992, 0.00250334, 0.00160279, 0.000940725, 0.000635973, 0.000389867, 0.000226347, 0.000149732, 0.000115336, ], diff --git a/ratdb/PMTPULSES.ratdb b/ratdb/PMTPULSES.ratdb index ee4c01c5..c461438c 100644 --- a/ratdb/PMTPULSES.ratdb +++ b/ratdb/PMTPULSES.ratdb @@ -18,8 +18,8 @@ termination_ohms: 50.0, //Shape parameters (should only be used for analytic type option, if necessary) - pulse_width: 0.4, - pulse_mean: 6.0, + pulse_width: 0.15, + pulse_mean: 10.5, //Explicit pulse shape (should only be used for datadriven type option) //This entry is a discretized version of lognormal with the above params diff --git a/ratdb/PMTTRANSIT.ratdb b/ratdb/PMTTRANSIT.ratdb index b13bfdb7..f612aa58 100644 --- a/ratdb/PMTTRANSIT.ratdb +++ b/ratdb/PMTTRANSIT.ratdb @@ -23,26 +23,30 @@ time: [-20.0, -19.21568627, -18.43137255, -17.64705882, -16.8627451, -16.0784313 time_prob:[1.40806896e-23, 7.11618481e-22, 3.07415373e-20, 1.13516505e-18, 3.58300581e-17, 9.66698580e-16, 2.22940883e-14, 4.39484357e-13, 7.40546261e-12, 1.06663550e-10, 1.31321230e-09, 1.38200279e-08, 1.24319131e-07, 9.55921167e-07, 6.28291610e-06, 3.52984398e-05, 1.69513710e-04, 6.95839718e-04, 2.44156712e-03, 7.32290148e-03, 1.87738257e-02, 4.11412460e-02, 7.70649974e-02, 1.23393409e-01, 1.68881403e-01, 1.97572620e-01, 1.97572620e-01, 1.68881403e-01, 1.23393409e-01, 7.70649974e-02, 4.11412460e-02, 1.87738257e-02, 7.32290148e-03, 2.44156712e-03, 6.95839718e-04, 1.69513710e-04, 3.52984398e-05, 6.28291610e-06, 9.55921167e-07, 1.24319131e-07, 1.38200279e-08, 1.31321230e-09, 1.06663550e-10, 7.40546261e-12, 4.39484357e-13, 2.22940883e-14, 9.66698580e-16, 3.58300581e-17, 1.13516505e-18, 3.07415373e-20, 7.11618481e-22, 1.40806896e-23], } -// Placeholder for r11780_hqe data +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of prompt peak is 0.965 ns +// Late ratio is 8.12% { name: "PMTTRANSIT", -index: "r11780_hqe", +index: "r11780_hqe_rev", valid_begin : [0, 0], valid_end : [0, 0], cable_delay: 0.0, +time : [-5.4, -5.3, -5.2, -5.1, -5.0, -4.9, -4.8, -4.7, -4.6, -4.5, -4.4, -4.3, -4.2, -4.1, -4.0, -3.9, -3.8, -3.7, -3.6, -3.5, -3.4, -3.3, -3.2, -3.1, -3.0, -2.9, -2.8, -2.7, -2.6, -2.5, -2.4, -2.3, -2.2, -2.1, -2.0, -1.9, -1.8, -1.7, -1.6, -1.5, -1.4, -1.3, -1.2, -1.1, -1.0, -0.9, -0.8, -0.7, -0.6, -0.5, -0.4, -0.3, -0.2, -0.1, 0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 4.0, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6, 4.7, 4.8, 4.9, 5.0, 5.1, 5.2, 5.3, 5.4, 5.5, 5.6, 5.7, 5.8, 5.9, 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, 7.0, 7.1, 7.2, 7.3, 7.4, 7.5, 7.6, 7.7, 7.8, 7.9, 8.0, 8.1, 8.2, 8.3, 8.4, 8.5, 8.6, 8.7, 8.8, 8.9, 9.0, 9.1, 9.2, 9.3, 9.4, 9.5, 9.6, 9.7, 9.8, 9.9, 10.0, 10.1, 10.2, 10.3, 10.4, 10.5, 10.6, 10.7, 10.8, 10.9, 11.0, 11.1, 11.2, 11.3, 11.4, 11.5, 11.6, 11.7, 11.8, 11.9, 12.0, 12.1, 12.2, 12.3, 12.4, 12.5, 12.6, 12.7, 12.8, 12.9, 13.0, 13.1, 13.2, 13.3, 13.4, 13.5, 13.6, 13.7, 13.8, 13.9, 14.0, 14.1, 14.2, 14.3, 14.4, 14.5, 14.6, 14.7, 14.8, 14.9, 15.0, 15.1, 15.2, 15.3, 15.4, 15.5, 15.6, 15.7, 15.8, 15.9, 16.0, 16.1, 16.2, 16.3, 16.4, 16.5, 16.6, 16.7, 16.8, 16.9, 17.0, 17.1, 17.2, 17.3, 17.4, 17.5, 17.6, 17.7, 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59.2 , 59.3 , 59.4 , 59.5 , 59.6 , 59.7 , 59.8 , 59.9 , 60.0 , 60.1 , 60.2 , 60.3 , 60.4 , 60.5 , 60.6 , 60.7 , 60.8 , 60.9 , 61.0 , 61.1 , 61.2 , 61.3 , 61.4 , 61.5 , 61.6 , 61.7 , 61.8 , 61.9 , 62.0 , 62.1 , 62.2 , 62.3 , 62.4 , 62.5 , 62.6 , 62.7 , 62.8 , 62.9 , 63.0 , 63.1 , 63.2 , 63.3 , 63.4 , 63.5 , 63.6 , 63.7 , 63.8 , 63.9 , 64.0 , 64.1 , 64.2 , 64.3 , 64.4 , 64.5 , 64.6 , 64.7 , 64.8 , 64.9 , 65.0 , 65.1 , 65.2 , 65.3 , 65.4 , 65.5 , 65.6 , 65.7 , 65.8 , 65.9 , 66.0 , 66.1 , 66.2 , 66.3 , 66.4 , 66.5 , 66.6 , 66.7 , 66.8 , 66.9 , 67.0 , 67.1 , 67.2 , 67.3 , 67.4 , 67.5 , 67.6 , 67.7 , 67.8 , 67.9 , 68.0 , 68.1 , 68.2 , 68.3 , 68.4 , 68.5 , 68.6 , 68.7 , 68.8 , 68.9 , 69.0 , 69.1 , 69.2 , 69.3 , 69.4 , 69.5 , 69.6 , 69.7 , 69.8 , 69.9 , 70.0 , 70.1 , 70.2 , 70.3 , 70.4 , 70.5 , 70.6 , 70.7 , 70.8 , 70.9 , 71.0 , 71.1 , 71.2 , 71.3 , 71.4 , 71.5 , 71.6 , 71.7 , 71.8 , 71.9 , 72.0 , 72.1 , 72.2 , 72.3 , 72.4 , 72.5 , 72.6 , 72.7 , 72.8 , 72.9 , 73.0 , 73.1 , 73.2 , 73.3 , 73.4 , 73.5 , 73.6 , 73.7 , 73.8 , 73.9 , 74.0 , 74.1 , 74.2 , 74.3 , 74.4 , 74.5 , 74.6 , 74.7 , 74.8 , 74.9 , 75.0 , 75.1 , 75.2 , 75.3 , 75.4 , 75.5 , 75.6 , 75.7 , 75.8 , 75.9 , 76.0 , 76.1 , 76.2 , 76.3 , 76.4 , 76.5 , 76.6 , 76.7 , 76.8 , 76.9 , 77.0 , 77.1 , 77.2 , 77.3 , 77.4 , 77.5 , 77.6 , 77.7 , 77.8 , 77.9 , 78.0 , 78.1 , 78.2 , 78.3 , 78.4 , 78.5 , 78.6 , 78.7 , 78.8 , 78.9 , 79.0 , 79.1 , 79.2 , 79.3 , 79.4 , 79.5 , 79.6 , 79.7 , 79.8 , 79.9], - -//Distribution input by Liz Kneale, Sheffield -//Values from https://arxiv.org/pdf/1210.2765.pdf -//Prompt Gaussian distribution with mean=0 and sigma=1.29 -//Second pulse exponential distribution -//Late pulse Gaussian distribution with mean=75 and sigma=1.5 -//Late ratio (20ns to 80ns) 4.3% -//All normalised so that pmax=100 -time_prob:[6.372073314671898e-51, 2.1131633185864248e-50, 6.965873393507018e-50, 2.282486955682661e-49, 7.434148734263409e-49, 2.4068243756973017e-48, 7.74546990506898e-48, 2.4776579742568847e-47, 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distribution from dark box tests at Berkeley +// Transit time spread sigma of prompt peak is 0.965 ns +// Late ratio is 8.12% +{ +name: "PMTTRANSIT", +index: "r11780_hqe", +valid_begin : [0, 0], +valid_end : [0, 0], +cable_delay: 0.0, +time : [-5.4, -5.3, -5.2, -5.1, -5.0, -4.9, -4.8, -4.7, -4.6, -4.5, -4.4, -4.3, -4.2, -4.1, -4.0, -3.9, -3.8, -3.7, -3.6, -3.5, -3.4, -3.3, -3.2, -3.1, -3.0, -2.9, -2.8, -2.7, -2.6, -2.5, -2.4, -2.3, -2.2, -2.1, -2.0, -1.9, -1.8, -1.7, -1.6, -1.5, -1.4, -1.3, -1.2, -1.1, -1.0, -0.9, -0.8, -0.7, -0.6, -0.5, -0.4, -0.3, -0.2, -0.1, 0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 4.0, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6, 4.7, 4.8, 4.9, 5.0, 5.1, 5.2, 5.3, 5.4, 5.5, 5.6, 5.7, 5.8, 5.9, 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, 7.0, 7.1, 7.2, 7.3, 7.4, 7.5, 7.6, 7.7, 7.8, 7.9, 8.0, 8.1, 8.2, 8.3, 8.4, 8.5, 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3.35206096104e-05 , 3.23337643348e-05 , 3.12185053544e-05 , 3.01656342821e-05 , 2.91674396387e-05 , 2.82174683902e-05 , 2.73103280014e-05 , 2.64415158715e-05 , 2.56072731531e-05 , 2.48044601196e-05 , 2.40304504477e-05 , 2.32830419904e-05 , 2.25603818355e-05 , 2.18609036625e-05 , 2.11832756276e-05 , 2.05263572038e-05 , 1.98891636022e-05 , 1.92708365702e-05 , 1.86706205306e-05 , 1.80878431656e-05 , 1.75218996864e-05 , 1.69722401389e-05 , 1.64383592013e-05 , 1.59197880153e-05 , 1.54160876711e-05 , 1.49268440279e-05 , 1.44516636111e-05 , 1.39901703719e-05 ] } -// Values based on hamamatsu spec + +// Average timing probability distribution from dark box tests at Berkeley +// Transit time spread sigma of promt peak is 1.211 ns +// Late ratio of 7.36% { name: "PMTTRANSIT", index: "r7081_hqe", valid_begin : [0, 0], valid_end : [0, 0], cable_delay: 0.0, - -time : [-20.0 , -19.9 , -19.8 , -19.7 , -19.6 , -19.5 , -19.4 , -19.3 , -19.2 , -19.1 , -19.0 , -18.9 , -18.8 , -18.7 , -18.6 , -18.5 , 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0.0009693662682361137, 0.0010078701723191354, 0.0009938693955636045, 0.0009508936570784852, 0.0009723134206951673, 0.001010332982270793, 0.0010272330546043785, 0.0010671036712715108, 0.0010913142402607548, 0.0010647454014353066, 0.0010467772859363673, 0.001045659952481195, 0.0010200762867401362, 0.0010145026356596996, 0.0010016607343307203, 0.000980982371840137, 0.0009748857044271545, 0.0009874538420247504, 0.0009959657426470935, 0.0009922447803102558, 0.0009555839734542499, 0.0009965975122784513, 0.0009987992933290339, 0.0009970500466761738, 0.0010449896310126634, 0.0010847137524565651, 0.001058903234460498, 0.0010822018478610588, 0.0010884646927744371, 0.0011018819449057117, 0.001164930280100016, 0.0011562311360434662, 0.0011391465884991764, 0.001127525812099681, 0.0011340721820680378, 0.0011996128486092305, 0.001154408357236382, 0.0011954696660135317, 0.0012287737384960896, 0.0012394123589468038, 0.0012494719962288618, 0.0012803085023809046, 0.0012873321146588865, 0.0012794215016128014, 0.0012825508180940388, 0.0012559921967140698, 0.0012295138264732475, 0.0012631215119785154, 0.0013028001562421852, 0.0012972853969966947, 0.0012414544954465162, 0.0012535871292353017, 0.0011963878783995089, 0.0012071486232018945, 0.001145274070915502, 0.0011614645599403598, 0.0011673261754581122, 0.001165781117046219, 0.0011743672207381105, 0.0011817940440412259, 0.001174524747898443, 0.0012290329458210303, 0.001234144166032073, 0.0011931991475501939, 0.001258264130239924, 0.0012879221118633015, 0.0012495473495584726, 0.0013110132039186205, 0.001307753075412529, 0.0013159675697852263, 0.0013126378923555757, 0.0012811913743742977, 0.001259927226707025, 0.0012467725695921362, 0.0012314463482482679, 0.0012331643649670034, 0.0011932194172183332, 0.0011499186923043538, 0.0011824168725277637, 0.0010905296434099096, 0.001076791825099851, 0.0010760837040932354, 0.0010096353062058745, 0.0009864717267040828, 0.0009874976499639513, 0.0009356528793351905, 0.0009758543466613002, 0.0009999431487030487, 0.0009751426207887679, 0.0009776752210498094, 0.0010255552792046052, 0.0010492074123990293, 0.0010799558051280411, 0.0010240031763685405, 0.0010259784087468704, 0.0010421991306069462, 0.0011061862050918982, 0.001160644417174953, 0.0011373526117267705, 0.0011509340438226822, 0.0012039359437825282, 0.0011928619920617664, 0.0011861230763752471, 0.0011885137474051993, 0.0012412767778934228, 0.001207033958951585, 0.0012283894743486173, 0.0012091375813052326, 0.0012514845863902662, 0.001268835213096885, 0.0012578433784266087, 0.0012396997532883828, 0.0012020340950851074, 0.0012014078989920768, 0.001169951507113981, 0.0011562535647081722, 0.0011643889303176236, 0.0011072157052009713, 0.0011514233550930777, 0.0010974109465957268, 0.0010627995428276246, 0.0010030046207978496, 0.0009843191594967042, 0.0009431819866515778, 0.0009224384151709101, 0.0009157357661759654, 0.0008851625520076323, 0.000890248493374991, 0.0008864760897464891, 0.0008848830181801083, 0.0008687233475155623, 0.0008220607298866736, 0.0008636640243181217, 0.0008433612270906881, 0.0008457672068760918, 0.0008156149574024458, 0.0008181810292395454, 0.0008277456437324335, 0.0008486911508799605, 0.0008281560021344219, 0.0008131046907887293, 0.0008095312003267134, 0.0008324946734237447, 0.0009285368560383116, 0.0009418307137396766, 0.000929359062367616, 0.0009474258261625674, 0.0009119181666861458, 0.0008738610785554935, 0.0008807854951150024, 0.0009366991613974548, 0.0009564036743154418, 0.0009589205544477145, 0.000952186126925173, 0.0009928665558914982, 0.0009978579802669997, 0.0009830093013671222, 0.000946133528633309, 0.0008292782630089132, 0.0007912252768319124, 0.000761667213928321, 0.0007610578068118621, 0.0007729897240031161, 0.0007960908148239193, 0.00078819373870047, 0.0007318222682899074, 0.0007187587748368728, 0.0006953351777201608, 0.0006855953100506971, 0.0006801408182284938, 0.0006823621162340473, 0.0006601764513594632, 0.0006661264284941514, 0.000668444011487652, 0.0006824114607561194, 0.0007115326517952891, 0.0006788681417377708, 0.0006578368133121963, 0.0006522656939552765, 0.0006539307961494586, 0.0006626322681985181, 0.0006704911747438246, 0.0006634491040943874, 0.0006763745001198159, 0.0006109708709721881, 0.0005747996561249286, 0.0005843208160932671, 0.0005831935842861988, 0.0005770063111269946, 0.0005671399509350362, 0.0005659681139401619, 0.0005517685562915229, 0.0005601344456367285, 0.0005225271385316313, 0.00048213892413069765, 0.00048253034288442707, 0.0004989298558206076, 0.0005381388752132969, 0.0005099120031455839, 0.0005445259509550364, 0.000577283295326941, 0.0005485510100369093, 0.0005126061629519477, 0.0004959082171799166, 0.0005082623855307742, 0.00047018987336140206, 0.0004910047523053458, 0.0004557309153934831, 0.00045295430164520983, 0.0004472172522132758, 0.00042522255719259735, 0.00038781887151968824, 0.0003547763784886284, 0.00034244494291122156, 0.0003120559988344211, 0.0002989523616290727, 0.0002935202087736657, 0.00030321885744629627, 0.00028268759170297134, 0.000269540320197579, 0.00027795223475204906, 0.00024246445519907945, 0.0002683845987434328, 0.0002668056483401449, 0.00025612213126162344, 0.00023545997955277368, 0.00022465778011508656, 0.0002098828923704251, 0.0002185012595682032, 0.00022035174668605685, 0.00021536910406448208, 0.00020998578862905945, 0.00020560712642120506, 0.00021208285783715645, 0.00020064745125859828, 0.00018611512252193857, 0.00018767761451766844, 0.00016757288601603306, 0.0001611743837550855, 0.00016615056134795003, 0.00015982063038883979, 0.00016504844213355578, 0.0001628084717766251, 0.00013828085001908684, 0.00011933831291377679, 0.00012210945901679774, 0.00013363569787261018, 0.0001327179770339113, 0.00011559090160186375, 0.0001165243743645696, 0.00010594736019546996, 0.00010343564351302722, 0.000105286837114432, 0.00010684932911016185, 0.00010902072816525536, 0.00012210945901679776, 0.00011587960320753857, 0.00010964974739827942, 0.00010778280187286771, 0.000105915856347456, 8.629281615697271e-05, 8.287913055983805e-05, 6.605650865747228e-05, 7.415330999214314e-05, 7.664927475057889e-05, 6.8568225339915e-05, 5.675328487842771e-05, 3.7145996611951315e-05, 3.806371745065021e-05, 2.4381831463751205e-05, 2.110077536278805e-05, 2.2034248125493895e-05, 1.8300357074670505e-05, 1.736688431196465e-05, 1.5499938786552956e-05, 1.8300357074670505e-05, 1.3632993261141258e-05, 1.1766047735729566e-05, 1.0832574973023715e-05, 8.032156684906166e-06, 6.165211159494478e-06, 8.032156684906173e-06, 8.032156684906166e-06, 3.364792871376924e-06, 2.431320108671079e-06, 1.497847345965232e-06, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0] } + // Values based on 100 picosecond timing resolution { name: "PMTTRANSIT", diff --git a/src/core/src/ProducerBlock.cc b/src/core/src/ProducerBlock.cc index 1d199125..e97e78f5 100644 --- a/src/core/src/ProducerBlock.cc +++ b/src/core/src/ProducerBlock.cc @@ -15,6 +15,9 @@ ProducerBlock::~ProducerBlock() { Clear(); } void ProducerBlock::Init(ProcBlock *theMainBlock) { mainBlock = theMainBlock; + for (Producer *p : fProducerList) { + p->SetMainBlock(mainBlock); + } AppendProducer(); AppendProducer(); AppendProducer(); diff --git a/src/daq/include/RAT/Digitizer.hh b/src/daq/include/RAT/Digitizer.hh index d94ea70f..fcf78179 100644 --- a/src/daq/include/RAT/Digitizer.hh +++ b/src/daq/include/RAT/Digitizer.hh @@ -47,7 +47,7 @@ class Digitizer { int fNSamples; // Total number of samples per digitized trace double fTerminationOhms; // Input impedence of digitizer // Channel:Digitized waveform for each channel - std::map> fDigitWaveForm; + std::map> fDigitWaveForm; std::map fPMTWaveformGenerators; diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index 5ec2730a..d1008423 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -17,6 +17,7 @@ #define __RAT_WaveformAnalysis__ #include +#include #include #include @@ -28,9 +29,11 @@ namespace RAT { class WaveformAnalysis { public: WaveformAnalysis(); + WaveformAnalysis(std::string analyzer_name); virtual ~WaveformAnalysis(){}; void RunAnalysis(DS::DigitPMT *pmt, int pmtID, Digitizer *fDigitizer); + double RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer); // Calculate baseline (in mV) void CalculatePedestal(); @@ -40,7 +43,15 @@ class WaveformAnalysis { // Apply a constant fraction discriminator to // calculate the threshold crossing - double CalculateTime(); + void CalculateTimeCFD(); + + // Calculate the time a threshold crossing occurs, with a linear interpolation + double CalculateThresholdCrossingTime(); + + double CalculateThresholdCrossingTime(double voltage_threshold) { + fVoltageCrossing = voltage_threshold; + return CalculateThresholdCrossingTime(); + } // Find the sample where a threshold crossing occurs void GetThresholdCrossing(); @@ -57,7 +68,14 @@ class WaveformAnalysis { // Integrate the digitized waveform to calculate charge void SlidingIntegral(); + // ADC counts to voltage (mV) + double DigitToVoltage(UShort_t digit) { return (digit - fPedestal) * fVoltageRes; } + protected: + + // Fit the digitized waveform using a lognormal function + void FitWaveform(); + // Digitizer settings DBLinkPtr fDigit; double fTimeStep; @@ -77,6 +95,10 @@ class WaveformAnalysis { double fThreshold; int fSlidingWindow; double fChargeThresh; + double fFitWindowLow; + double fFitWindowHigh; + double fFitShape; + double fFitScale; // Digitized waveform std::vector fDigitWfm; @@ -92,6 +114,14 @@ class WaveformAnalysis { double fCharge; double fTotalCharge; double fVoltageOverThreshold; + double fDigitTime; + + // Fitted variables + int fRunFit; + double fFittedTime; + double fFittedHeight; + double fFittedBaseline; + double fChi2NDF; // Invalid value for bad waveforms const UShort_t INVALID = 9999; diff --git a/src/daq/src/Digitizer.cc b/src/daq/src/Digitizer.cc index c0878467..bc337034 100644 --- a/src/daq/src/Digitizer.cc +++ b/src/daq/src/Digitizer.cc @@ -40,13 +40,13 @@ void Digitizer::DigitizePMT(DS::MCPMT* mcpmt, int pmtID, double triggerTime, DS: void Digitizer::DigitizeSum(DS::EV* ev) { DS::Digit digit; - std::map> waveforms = fDigitWaveForm; - for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { - digit.SetWaveform(UShort_t(it->first), waveforms[UShort_t(it->first)]); + std::map> waveforms = fDigitWaveForm; + for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { + digit.SetWaveform(it->first, waveforms[UShort_t(it->first)]); } digit.SetDigitName(fDigitName); - digit.SetNSamples(UShort_t(fNSamples)); + digit.SetNSamples(uint32_t(fNSamples)); digit.SetNBits(UShort_t(fNBits)); digit.SetDynamicRange((fVhigh - fVlow)); digit.SetSamplingRate(fSamplingRate); @@ -78,7 +78,7 @@ void Digitizer::AddChannel(int ichannel, PMTWaveform pmtwf) { } // Save sample - fDigitWaveForm[UShort_t(ichannel)].push_back(UShort_t(adcs)); + fDigitWaveForm[ichannel].push_back(UShort_t(adcs)); // Step on time currenttime += timeres; diff --git a/src/daq/src/PMTWaveform.cc b/src/daq/src/PMTWaveform.cc index 14266243..7f677634 100644 --- a/src/daq/src/PMTWaveform.cc +++ b/src/daq/src/PMTWaveform.cc @@ -9,7 +9,7 @@ PMTWaveform::~PMTWaveform() {} double PMTWaveform::GetHeight(double currenttime) { double height = 0.; - for (unsigned int i = 0; i < fPulse.size() && fPulse[i].GetPulseStartTime() <= currenttime; i++) { + for (unsigned int i = 0; i < fPulse.size(); i++) { height += fPulse[i].GetPulseHeight(currenttime); } return height; diff --git a/src/daq/src/PMTWaveformGenerator.cc b/src/daq/src/PMTWaveformGenerator.cc index a5dcd5f4..0bd05dd5 100644 --- a/src/daq/src/PMTWaveformGenerator.cc +++ b/src/daq/src/PMTWaveformGenerator.cc @@ -74,7 +74,7 @@ PMTWaveform PMTWaveformGenerator::GenerateWaveforms(DS::MCPMT *mcpmt, double tri pmtpulse->SetPulseMin(fPMTPulseMin); pmtpulse->SetPulseOffset(fPMTPulseOffset); pmtpulse->SetPulseTimeOffset(fPMTPulseTimeOffset); - pmtpulse->SetPulseStartTime(mcpe->GetFrontEndTime() - triggerTime); + pmtpulse->SetPulseStartTime(mcpe->GetFrontEndTime()); pmtpulse->SetPulsePolarity(fPMTPulsePolarity); pmtpulse->SetPulseWidth(fPMTPulseWidth); diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 390c40d2..c394db4d 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -1,11 +1,15 @@ #include #include -#include +#include +#include +#include namespace RAT { -WaveformAnalysis::WaveformAnalysis() { - fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS"); +WaveformAnalysis::WaveformAnalysis() { WaveformAnalysis(""); } + +WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { + fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS", analyzer_name); fPedWindowLow = fDigit->GetI("pedestal_window_low"); fPedWindowHigh = fDigit->GetI("pedestal_window_high"); fLookback = fDigit->GetD("lookback"); @@ -15,6 +19,11 @@ WaveformAnalysis::WaveformAnalysis() { fThreshold = fDigit->GetD("voltage_threshold"); fSlidingWindow = fDigit->GetD("sliding_window_width"); fChargeThresh = fDigit->GetD("sliding_window_thresh"); + fRunFit = fDigit->GetI("run_fitting"); + fFitWindowLow = fDigit->GetD("fit_window_low"); + fFitWindowHigh = fDigit->GetD("fit_window_high"); + fFitShape = fDigit->GetD("lognormal_shape"); + fFitScale = fDigit->GetD("lognormal_scale"); } void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer *fDigitizer) { @@ -23,18 +32,32 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer fDigitWfm = fDigitizer->fDigitWaveForm[pmtID]; + // Calculate baseline in mV CalculatePedestal(); - double digit_time = CalculateTime(); + // Calculate peak in mV + GetPeak(); - fLowIntWindow = int((digit_time - fIntWindowLow) / fTimeStep); - fHighIntWindow = int((digit_time + fIntWindowHigh) / fTimeStep); - fTermOhms = fDigitizer->fTerminationOhms; + // Calculate the constant-fraction hit-time + CalculateTimeCFD(); + + // Get the total number of threshold crossings + // Also fills the contencts of wfm, for the fit. + GetNCrossings(); + fTermOhms = fDigitizer->fTerminationOhms; + // Integrate the waveform to calculate the charge Integrate(); SlidingIntegral(); - digitpmt->SetDigitizedTime(digit_time); + if(fRunFit){ + FitWaveform(); + } + + digitpmt->SetDigitizedTime(fDigitTime); + digitpmt->SetFittedTime(fFittedTime); + digitpmt->SetFittedBaseline(fFittedBaseline); + digitpmt->SetFittedHeight(fFittedHeight); digitpmt->SetDigitizedCharge(fCharge); digitpmt->SetDigitizedTotalCharge(fTotalCharge); digitpmt->SetInterpolatedTime(fInterpolatedTime); @@ -46,6 +69,33 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer digitpmt->SetPeakVoltage(fVoltagePeak); } +double WaveformAnalysis::RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer) { + fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); + fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns + + fDigitWfm = fDigitizer->fDigitWaveForm[pmtID]; + + CalculatePedestal(); + double trigger_threshold = fThreshold; + double trigger_lookback = fLookback; + try { + trigger_threshold = fDigit->GetD("trigger_voltage_threshold"); + trigger_lookback = fDigit->GetD("trigger_lookback"); + } catch (DBNotFoundError &e) { + warn << "WaveformAnalysis: Trigger threshold and lookback not found in database. " + << "Using the same parameters as PMT Waveforms." << newline; + } + fVoltageRes *= -1; // Invert the voltage since the waveform goes ABOVE threshold when a trigger occurs + trigger_threshold *= -1; + GetPeak(); + // HACK: Store the old lookback value, restore after a trigger time analysis is done. + double old_lookback = fLookback; + fLookback = trigger_lookback; + double trigger_time = CalculateThresholdCrossingTime(trigger_threshold); + fLookback = old_lookback; + return trigger_time; +} + void WaveformAnalysis::CalculatePedestal() { /* Calculate the baseline in the window between low - high samples. @@ -83,7 +133,7 @@ void WaveformAnalysis::GetPeak() { fVoltagePeak = 999; fSamplePeak = -999; for (size_t i = 0; i < fDigitWfm.size(); i++) { - double voltage = (fDigitWfm[i] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[i]); // Downward going pulse if (voltage < fVoltagePeak) { @@ -95,11 +145,9 @@ void WaveformAnalysis::GetPeak() { void WaveformAnalysis::GetThresholdCrossing() { /* - Identifies the sample at which the constant-fraction threshold crossing occurs + Identifies the sample at which threshold crossing occurs */ fThresholdCrossing = 0; - fVoltageCrossing = fConstFrac * fVoltagePeak; - // Make sure we don't scan passed the beginning of the waveform Int_t lb = Int_t(fSamplePeak) - Int_t(fLookback / fTimeStep); UShort_t back_window = (lb > 0) ? lb : 0; @@ -115,7 +163,7 @@ void WaveformAnalysis::GetThresholdCrossing() { // Reached the begining of the waveform // returned an invalid value - if (i == 0) { + if (i == back_window) { fThresholdCrossing = INVALID; break; } @@ -133,7 +181,7 @@ void WaveformAnalysis::GetNCrossings() { bool fCrossed = false; // Scan over the entire waveform for (UShort_t i = 0; i < fDigitWfm.size(); i++) { - double voltage = (fDigitWfm[i] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[i]); // If we crossed below threshold if (voltage < fThreshold) { @@ -153,20 +201,13 @@ void WaveformAnalysis::GetNCrossings() { } } -double WaveformAnalysis::CalculateTime() { +double WaveformAnalysis::CalculateThresholdCrossingTime() { /* - Apply constant-fraction discriminator to digitized PMT waveforms. + Calculate the time a threshold crossing occurs, with a linear interpolation */ - - // Calculate peak in mV - GetPeak(); - // Get the sample where the voltage thresh is crossed GetThresholdCrossing(); - // Get the total number of threshold crossings - GetNCrossings(); - if (fThresholdCrossing == INVALID || fThresholdCrossing >= fDigitWfm.size()) { return INVALID; } @@ -176,13 +217,21 @@ double WaveformAnalysis::CalculateTime() { } // Interpolate between the two samples where the CFD threshold is crossed - double v1 = (fDigitWfm[fThresholdCrossing + 1] - fPedestal) * fVoltageRes; - double v2 = (fDigitWfm[fThresholdCrossing] - fPedestal) * fVoltageRes; + double v1 = DigitToVoltage(fDigitWfm[fThresholdCrossing + 1]); + double v2 = DigitToVoltage(fDigitWfm[fThresholdCrossing]); Interpolate(v1, v2); - double tcdf = double(fThresholdCrossing) * fTimeStep + fInterpolatedTime; + double interpolated_time = double(fThresholdCrossing) * fTimeStep + fInterpolatedTime; - return tcdf; + return interpolated_time; +} + +void WaveformAnalysis::CalculateTimeCFD() { + /* + Apply constant-fraction discriminator to digitized PMT waveforms. + */ + fVoltageCrossing = fConstFrac * fVoltagePeak; + fDigitTime = CalculateThresholdCrossingTime(); } void WaveformAnalysis::Integrate() { @@ -191,6 +240,9 @@ void WaveformAnalysis::Integrate() { */ fCharge = 0; + fLowIntWindow = fSamplePeak - fIntWindowLow; + fHighIntWindow = fSamplePeak + fIntWindowHigh; + if (fLowIntWindow >= fDigitWfm.size()) { fCharge = INVALID; return; @@ -202,7 +254,7 @@ void WaveformAnalysis::Integrate() { fLowIntWindow = (fLowIntWindow < 0) ? 0 : fLowIntWindow; for (int i = fLowIntWindow; i < fHighIntWindow; i++) { - double voltage = (fDigitWfm[i] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[i]); fCharge += (-voltage * fTimeStep) / fTermOhms; // in pC } } @@ -219,7 +271,7 @@ void WaveformAnalysis::SlidingIntegral() { int sample_start = i * fSlidingWindow; int sample_end = (i + 1) * fSlidingWindow; for (int j = sample_start; j < sample_end; j++) { - double voltage = (fDigitWfm[j] - fPedestal) * fVoltageRes; + double voltage = DigitToVoltage(fDigitWfm[j]); charge += (-voltage * fTimeStep) / fTermOhms; // in pC } if (charge > fChargeThresh) { @@ -228,4 +280,73 @@ void WaveformAnalysis::SlidingIntegral() { } } +double SingleLognormal(double* x, double* par){ + /* + Lognormal distribution + */ + double m = 10.5; + double s = 0.15; + + double mag = par[0]; + double theta = par[1]; + double baseline = par[2]; + + if(x[0] <= theta){ + return baseline; + } + + double q = baseline - mag * TMath::LogNormal(x[0], s, theta, m); + return q; +} + +void WaveformAnalysis::FitWaveform(){ + /* + Fit the PMT pulse to a lognormal distribution + */ + // Fit around the peak + TH1D* wfm = new TH1D("wfm","wfm",fDigitWfm.size(),0,fDigitWfm.size()*fTimeStep); + for (UShort_t i = 0; i < fDigitWfm.size(); i++) { + wfm->SetBinContent(i, DigitToVoltage(fDigitWfm[i])); + // Arb. choice, TODO + wfm->SetBinError(i, fVoltageRes*2.0); + } + double bf = fDigitTime - fFitWindowLow; + double tf = fDigitTime + fFitWindowHigh; + + // Check the range is within the digitizer window + bf = (bf > 0) ? bf : 0; + tf = (tf > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : tf; + + double high = fDigitTime+50.0; + high = (high > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : high; + + double med = fDigitTime-8.0; + med = (med > 0) ? med : 0; + + double low = fDigitTime-50.0; + low = (low > 0) ? low : 0; + + const int ndf = 3; + TF1* ln_fit = new TF1("ln_fit",SingleLognormal,bf,tf,ndf); + ln_fit->SetParameter(0, 40.0); + // Fit assumes SPE waveform of limited size + ln_fit->SetParLimits(0, 1.0, 400.0); + // Fitted time around the peak + ln_fit->SetParameter(1, med); + ln_fit->SetParLimits(1, low, high); + // Baseline centered around zero + ln_fit->SetParameter(2, 0.0); + ln_fit->SetParLimits(2, -1.0, 1.0); + wfm->Fit("ln_fit","0QR","",bf,tf); + + fFittedHeight = ln_fit->GetParameter(0); + fFittedTime = ln_fit->GetParameter(1) + fFitScale; + fFittedBaseline = ln_fit->GetParameter(2); + fChi2NDF = ln_fit->GetChisquare()/ln_fit->GetNDF(); + + delete wfm; + delete ln_fit; +} + + } // namespace RAT diff --git a/src/ds/include/RAT/DS/Digit.hh b/src/ds/include/RAT/DS/Digit.hh index 7d71c1ed..1d95d91e 100644 --- a/src/ds/include/RAT/DS/Digit.hh +++ b/src/ds/include/RAT/DS/Digit.hh @@ -32,8 +32,8 @@ class Digit : public TObject { virtual Double_t GetSamplingRate() const { return sampling_rate; }; // Total number of samples - virtual void SetNSamples(UShort_t _nsamples) { nsamples = _nsamples; }; - virtual UShort_t GetNSamples() const { return nsamples; }; + virtual void SetNSamples(uint32_t _nsamples) { nsamples = _nsamples; }; + virtual uint32_t GetNSamples() const { return nsamples; }; // ADC bits virtual void SetNBits(UShort_t _nbits) { nbits = _nbits; }; @@ -44,24 +44,23 @@ class Digit : public TObject { virtual Double_t GetDynamicRange() const { return dynamic_range; }; /// Set a waveform, overwrites existing - virtual void SetWaveform(const UShort_t waveformID, const std::vector &samples) { + virtual void SetWaveform(const int waveformID, const std::vector &samples) { waveforms[waveformID] = samples; } // Get a map of waveform IDs to digitized waveforms - virtual std::map> GetAllWaveforms() const { return waveforms; } + virtual std::map> GetAllWaveforms() const { return waveforms; } // Get the waveform for a digitizer - virtual std::vector GetWaveform(const UShort_t waveformID) const { return waveforms.at(waveformID); } + virtual std::vector GetWaveform(const int waveformID) const { return waveforms.at(waveformID); } /// Check if a waveform exists - Bool_t ExistsWaveform(const UShort_t waveformID) const { return waveforms.count(waveformID) > 0; } + Bool_t ExistsWaveform(const int waveformID) const { return waveforms.count(waveformID) > 0; } /// Get a list (vector) of all the IDs that are available - std::vector GetIDs() const { - std::vector ret; - for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); - it++) { + std::vector GetIDs() const { + std::vector ret; + for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { ret.push_back(it->first); } return ret; @@ -70,15 +69,15 @@ class Digit : public TObject { /// Delete all waveforms virtual void PruneWaveforms() { waveforms.clear(); } - ClassDef(Digit, 2); + ClassDef(Digit, 3); protected: std::string name; Double_t sampling_rate; - UShort_t nsamples; + uint32_t nsamples; UShort_t nbits; Double_t dynamic_range; - std::map> waveforms; ///< Map of input number to samples + std::map> waveforms; ///< Map of input number to samples }; } // namespace DS diff --git a/src/ds/include/RAT/DS/DigitPMT.hh b/src/ds/include/RAT/DS/DigitPMT.hh index 0697e016..f45dca7f 100644 --- a/src/ds/include/RAT/DS/DigitPMT.hh +++ b/src/ds/include/RAT/DS/DigitPMT.hh @@ -64,20 +64,40 @@ class DigitPMT : public TObject { virtual void SetPeakVoltage(Double_t _peak) { this->peak = _peak; } virtual Double_t GetPeakVoltage() { return peak; } - ClassDef(DigitPMT, 1); + /** Fitted time in ns */ + virtual void SetFittedTime(Double_t _fTime) { this->fTime = _fTime; } + virtual Double_t GetFittedTime() { return fTime; } + + /** Fitted mag */ + virtual void SetFittedHeight(Double_t _fMag) { this->fMag = _fMag; } + virtual Double_t GetFittedHeight() { return fMag; } + + /** Fitted bas */ + virtual void SetFittedBaseline(Double_t _fBas) { this->fBas = _fBas; } + virtual Double_t GetFittedBaseline() { return fBas; } + + /** Local trigger time at the location of the PMT. Useful for PMT timing corrections */ + virtual void SetLocalTriggerTime(Double_t _trigger_time) { this->local_trigger_time = _trigger_time; } + virtual Double_t GetLocalTriggerTime() { return local_trigger_time; } + + ClassDef(DigitPMT, 3); protected: - Int_t id; - Double_t dTime; - Double_t dCharge; - Double_t dTCharge; - Double_t iTime; - Int_t sTime; - Int_t nCrossings; - Double_t timeOverThresh; - Double_t voltageOverThresh; - Double_t pedestal; - Double_t peak; + Int_t id = -9999; + Double_t dTime = -9999; + Double_t dCharge = -9999; + Double_t dTCharge = -9999; + Double_t iTime = -9999; + Int_t sTime = -9999; + Int_t nCrossings = -9999; + Double_t timeOverThresh = -9999; + Double_t voltageOverThresh = -9999; + Double_t pedestal = -9999; + Double_t peak = -9999; + Double_t fTime = -9999; + Double_t fMag = -9999; + Double_t fBas = -9999; + Double_t local_trigger_time = -9999; }; } // namespace DS diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index f48be60a..7e997a1e 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -49,6 +49,8 @@ class OutNtupleProc : public Processor { bool tracking; bool mcparticles; bool pmthits; + bool digitizerhits; + bool digitizerfits; bool untriggered; bool mchits; }; @@ -95,15 +97,19 @@ class OutNtupleProc : public Processor { int mcpecount; std::vector mcpmtid; std::vector mcpmtnpe; + std::vector mcpmtcharge; // MCPE - std::vector mcpetime; + std::vector mcpehittime; + std::vector mcpefrontendtime; std::vector mcpeprocess; std::vector mcpewavelength; std::vector mcpex; std::vector mcpey; std::vector mcpez; + std::vector mcpecharge; // MCParticles int mcpcount; + int mcid; std::vector pdgcodes; std::vector mcKEnergies; std::vector mcPosx; @@ -121,9 +127,17 @@ class OutNtupleProc : public Processor { std::vector hitPMTID; std::vector hitPMTTime; std::vector hitPMTCharge; - std::vector hitPMTDigitizedTime; - std::vector hitPMTDigitizedCharge; - std::vector hitPMTNCrossings; + // Store PMT information from digitized waveform + std::vector digitPeak; + std::vector digitTime; + std::vector digitCharge; + std::vector digitLocalTriggerTime; + std::vector digitNCrossings; + std::vector digitPMTID; + // Information from fit to the waveforms + std::vector fitTime; + std::vector fitBaseline; + std::vector fitPeak; // Tracking std::map processCodeMap; std::vector processCodeIndex; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index abccf693..03b79dbe 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -46,6 +46,8 @@ OutNtupleProc::OutNtupleProc() : Processor("outntuple") { options.tracking = table->GetZ("include_tracking"); options.mcparticles = table->GetZ("include_mcparticles"); options.pmthits = table->GetZ("include_pmthits"); + options.digitizerhits = table->GetZ("include_digitizerhits"); + options.digitizerfits = table->GetZ("include_digitizerfits"); options.untriggered = table->GetZ("include_untriggered_events"); options.mchits = table->GetZ("include_mchits"); } catch (DBNotFoundError &e) { @@ -96,6 +98,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("nhits", &nhits); outputTree->Branch("triggerTime", &triggerTime); // MC Information + outputTree->Branch("mcid", &mcid); outputTree->Branch("mcparticlecount", &mcpcount); outputTree->Branch("mcpecount", &mcpecount); outputTree->Branch("mcnhits", &mcnhits); @@ -124,17 +127,30 @@ bool OutNtupleProc::OpenFile(std::string filename) { // Information about *first* detected PE outputTree->Branch("hitPMTTime", &hitPMTTime); outputTree->Branch("hitPMTCharge", &hitPMTCharge); + } + if (options.digitizerhits) { // Output of the waveform analysis - outputTree->Branch("hitPMTDigitizedTime", &hitPMTDigitizedTime); - outputTree->Branch("hitPMTDigitizedCharge", &hitPMTDigitizedCharge); - outputTree->Branch("hitPMTNCrossings", &hitPMTNCrossings); + outputTree->Branch("digitPMTID", &digitPMTID); + outputTree->Branch("digitTime", &digitTime); + outputTree->Branch("digitCharge", &digitCharge); + outputTree->Branch("digitNCrossings", &digitNCrossings); + outputTree->Branch("digitPeak", &digitPeak); + outputTree->Branch("digitLocalTriggerTime", &digitLocalTriggerTime); + if (options.digitizerfits) { + // From the lognormal fit to the waveforms + outputTree->Branch("fitTime", &fitTime); + outputTree->Branch("fitBaseline", &fitBaseline); + outputTree->Branch("fitPeak", &fitPeak); + } } if (options.mchits) { // Save full MC PMT hit information outputTree->Branch("mcPMTID", &mcpmtid); outputTree->Branch("mcPMTNPE", &mcpmtnpe); + outputTree->Branch("mcPMTCharge", &mcpmtcharge); - outputTree->Branch("mcPETime", &mcpetime); + outputTree->Branch("mcPEHitTime", &mcpehittime); + outputTree->Branch("mcPEFrontEndTime", &mcpefrontendtime); // Production process // 1=Cherenkov, 0=Dark noise, 2=Scint., 3=Reem., 4=Unknown outputTree->Branch("mcPEProcess", &mcpeprocess); @@ -142,6 +158,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("mcPEx", &mcpex); outputTree->Branch("mcPEy", &mcpey); outputTree->Branch("mcPEz", &mcpez); + outputTree->Branch("mcPECharge", &mcpecharge); } if (options.tracking) { // Save particle tracking information @@ -184,6 +201,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { mcTime.clear(); DS::MC *mc = ds->GetMC(); + mcid = mc->GetID(); mcpcount = mc->GetMCParticleCount(); for (int pid = 0; pid < mcpcount; pid++) { DS::MCParticle *particle = mc->GetMCParticle(pid); @@ -200,14 +218,14 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { mcTime.push_back(particle->GetTime()); } // First particle's position, direction, and time - mcpdg = pdgcodes[0]; - mcx = mcPosx[0]; - mcy = mcPosy[0]; - mcz = mcPosz[0]; - mcu = mcDirx[0]; - mcv = mcDiry[0]; - mcw = mcDirz[0]; - mct = mcTime[0]; + mcpdg = mcpcount ? pdgcodes[0] : -9999; + mcx = mcpcount ? mcPosx[0] : -9999; + mcy = mcpcount ? mcPosy[0] : -9999; + mcz = mcpcount ? mcPosz[0] : -9999; + mcu = mcpcount ? mcDirx[0] : -9999; + mcv = mcpcount ? mcDiry[0] : -9999; + mcw = mcpcount ? mcDirz[0] : -9999; + mct = mcpcount ? mcTime[0] : -9999; mcke = accumulate(mcKEnergies.begin(), mcKEnergies.end(), 0.0); // Tracking if (options.tracking) { @@ -285,14 +303,17 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { // MCPMT information mcpmtid.clear(); mcpmtnpe.clear(); + mcpmtcharge.clear(); // MCPE information - mcpetime.clear(); + mcpehittime.clear(); + mcpefrontendtime.clear(); mcpeprocess.clear(); mcpewavelength.clear(); mcpex.clear(); mcpey.clear(); mcpez.clear(); + mcpecharge.clear(); mcnhits = mc->GetMCPMTCount(); mcpecount = mc->GetNumPE(); @@ -301,14 +322,17 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { DS::MCPMT *mcpmt = mc->GetMCPMT(ipmt); mcpmtid.push_back(mcpmt->GetID()); mcpmtnpe.push_back(mcpmt->GetMCPhotonCount()); + mcpmtcharge.push_back(mcpmt->GetCharge()); TVector3 position = pmtinfo->GetPosition(mcpmt->GetID()); for (int ipe = 0; ipe < mcpmt->GetMCPhotonCount(); ipe++) { RAT::DS::MCPhoton *mcph = mcpmt->GetMCPhoton(ipe); - mcpetime.push_back(mcph->GetFrontEndTime()); + mcpehittime.push_back(mcph->GetHitTime()); + mcpefrontendtime.push_back(mcph->GetFrontEndTime()); mcpewavelength.push_back(mcph->GetLambda()); mcpex.push_back(position.X()); mcpey.push_back(position.Y()); mcpez.push_back(position.Z()); + mcpecharge.push_back(mcph->GetCharge()); if (mcph->IsDarkHit()) { mcpeprocess.push_back(noise); continue; @@ -395,9 +419,6 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTID.clear(); hitPMTTime.clear(); hitPMTCharge.clear(); - hitPMTDigitizedTime.clear(); - hitPMTDigitizedCharge.clear(); - hitPMTNCrossings.clear(); for (int pmtc = 0; pmtc < ev->GetPMTCount(); pmtc++) { RAT::DS::PMT *pmt = ev->GetPMT(pmtc); @@ -405,11 +426,34 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTTime.push_back(pmt->GetTime()); hitPMTCharge.push_back(pmt->GetCharge()); } + } + if (options.digitizerhits) { + digitTime.clear(); + digitCharge.clear(); + digitNCrossings.clear(); + digitPeak.clear(); + digitPMTID.clear(); + digitLocalTriggerTime.clear(); + + if (options.digitizerfits) { + fitTime.clear(); + fitBaseline.clear(); + fitPeak.clear(); + } + for (int pmtc = 0; pmtc < ev->GetDigitPMTCount(); pmtc++) { RAT::DS::DigitPMT *digitpmt = ev->GetDigitPMT(pmtc); - hitPMTDigitizedTime.push_back(digitpmt->GetDigitizedTime()); - hitPMTDigitizedCharge.push_back(digitpmt->GetDigitizedCharge()); - hitPMTNCrossings.push_back(digitpmt->GetNCrossings()); + digitPMTID.push_back(digitpmt->GetID()); + digitTime.push_back(digitpmt->GetDigitizedTime()); + digitCharge.push_back(digitpmt->GetDigitizedCharge()); + digitNCrossings.push_back(digitpmt->GetNCrossings()); + digitPeak.push_back(digitpmt->GetPeakVoltage()); + digitLocalTriggerTime.push_back(digitpmt->GetLocalTriggerTime()); + if (options.digitizerfits) { + fitTime.push_back(digitpmt->GetFittedTime()); + fitBaseline.push_back(digitpmt->GetFittedBaseline()); + fitPeak.push_back(digitpmt->GetFittedHeight()); + } } } this->FillEvent(ds, ev); @@ -422,9 +466,19 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTID.clear(); hitPMTTime.clear(); hitPMTCharge.clear(); - hitPMTDigitizedTime.clear(); - hitPMTDigitizedCharge.clear(); - hitPMTNCrossings.clear(); + } + if (options.digitizerhits){ + digitTime.clear(); + digitCharge.clear(); + digitNCrossings.clear(); + digitPeak.clear(); + digitPMTID.clear(); + digitLocalTriggerTime.clear(); + if (options.digitizerfits){ + fitTime.clear(); + fitBaseline.clear(); + fitPeak.clear(); + } } this->FillNoTriggerEvent(ds); outputTree->Fill(); diff --git a/src/ratbase/include/RAT/Rat.hh b/src/ratbase/include/RAT/Rat.hh index 0bc5bd44..c0fd902d 100644 --- a/src/ratbase/include/RAT/Rat.hh +++ b/src/ratbase/include/RAT/Rat.hh @@ -5,6 +5,7 @@ #include #include #include +#include #include #include @@ -26,6 +27,7 @@ class Rat { DB *rdb; DBMessenger *rdb_messenger; RatMessenger *rat_messenger; + ProducerBlock prodBlock; public: inline static std::set ratdb_directories = {}; diff --git a/src/ratbase/src/Rat.cc b/src/ratbase/src/Rat.cc index d00d7c80..5aa4f40b 100644 --- a/src/ratbase/src/Rat.cc +++ b/src/ratbase/src/Rat.cc @@ -15,7 +15,6 @@ #include #include #include -#include #include #include #include @@ -140,10 +139,8 @@ void Rat::Begin() { info << "Setting default vector file to " << this->vector_filename << newline; } - // Build event producers - ProducerBlock *prodBlock = new ProducerBlock(); // Main analysis block - ProcBlock *mainBlock = new ProcBlock(prodBlock); + ProcBlock *mainBlock = new ProcBlock(&prodBlock); // Process block manager -- supplies user commands to construct analyis // sequence and does the processor creation ProcBlockManager *blockManager = new ProcBlockManager(mainBlock); @@ -184,7 +181,6 @@ void Rat::Begin() { delete blockManager; delete mainBlock; - delete prodBlock; delete rdb_messenger; delete trackingMessenger; } catch (DBNotFoundError &e) { From 2cda8a52ea3286b20a5f3bd8eb274e996ad0bc82 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Tue, 16 Jul 2024 16:26:09 -0700 Subject: [PATCH 018/103] revert changes and remove unused header --- src/daq/include/RAT/WaveformAnalysis.hh | 1 - src/daq/src/PMTWaveform.cc | 2 +- src/daq/src/PMTWaveformGenerator.cc | 2 +- 3 files changed, 2 insertions(+), 3 deletions(-) diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index d1008423..5974cfe9 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -17,7 +17,6 @@ #define __RAT_WaveformAnalysis__ #include -#include #include #include diff --git a/src/daq/src/PMTWaveform.cc b/src/daq/src/PMTWaveform.cc index 7f677634..14266243 100644 --- a/src/daq/src/PMTWaveform.cc +++ b/src/daq/src/PMTWaveform.cc @@ -9,7 +9,7 @@ PMTWaveform::~PMTWaveform() {} double PMTWaveform::GetHeight(double currenttime) { double height = 0.; - for (unsigned int i = 0; i < fPulse.size(); i++) { + for (unsigned int i = 0; i < fPulse.size() && fPulse[i].GetPulseStartTime() <= currenttime; i++) { height += fPulse[i].GetPulseHeight(currenttime); } return height; diff --git a/src/daq/src/PMTWaveformGenerator.cc b/src/daq/src/PMTWaveformGenerator.cc index 0bd05dd5..a5dcd5f4 100644 --- a/src/daq/src/PMTWaveformGenerator.cc +++ b/src/daq/src/PMTWaveformGenerator.cc @@ -74,7 +74,7 @@ PMTWaveform PMTWaveformGenerator::GenerateWaveforms(DS::MCPMT *mcpmt, double tri pmtpulse->SetPulseMin(fPMTPulseMin); pmtpulse->SetPulseOffset(fPMTPulseOffset); pmtpulse->SetPulseTimeOffset(fPMTPulseTimeOffset); - pmtpulse->SetPulseStartTime(mcpe->GetFrontEndTime()); + pmtpulse->SetPulseStartTime(mcpe->GetFrontEndTime() - triggerTime); pmtpulse->SetPulsePolarity(fPMTPulsePolarity); pmtpulse->SetPulseWidth(fPMTPulseWidth); From 1255ba1363e8786cfd208df4f833baaa2bdaf803 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Tue, 16 Jul 2024 16:40:47 -0700 Subject: [PATCH 019/103] clean-up --- src/daq/src/WaveformAnalysis.cc | 19 ++++++++++--------- 1 file changed, 10 insertions(+), 9 deletions(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 5dc02170..3736fdbc 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -312,18 +312,19 @@ void WaveformAnalysis::FitWaveform(){ double bf = fDigitTime - fFitWindowLow; double tf = fDigitTime + fFitWindowHigh; - // Check the range is within the digitizer window + // Check the fit range is within the digitizer window bf = (bf > 0) ? bf : 0; tf = (tf > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : tf; - double high = fDigitTime+50.0; - high = (high > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : high; + // Check the timing range is within the digitizer window + double thigh = fDigitTime + fFitScale + fFitWindowHigh; + thigh = (thigh > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : thigh; - double med = fDigitTime-8.0; - med = (med > 0) ? med : 0; + double tmed = fDigitTime - fFitScale; + tmed = (tmed > 0) ? tmed : 0; - double low = fDigitTime-50.0; - low = (low > 0) ? low : 0; + double tlow = fDigitTime - fFitScale - fFitWindowLow; + tlow = (tlow > 0) ? tlow : 0; const int ndf = 3; TF1* ln_fit = new TF1("ln_fit",SingleLognormal,bf,tf,ndf); @@ -331,8 +332,8 @@ void WaveformAnalysis::FitWaveform(){ // Fit assumes SPE waveform of limited size ln_fit->SetParLimits(0, 1.0, 400.0); // Fitted time around the peak - ln_fit->SetParameter(1, med); - ln_fit->SetParLimits(1, low, high); + ln_fit->SetParameter(1, tmed); + ln_fit->SetParLimits(1, tlow, thigh); // Baseline centered around zero ln_fit->SetParameter(2, 0.0); ln_fit->SetParLimits(2, -1.0, 1.0); From 5604b5d83f2beb9fa0752e32ab4427c62093d7d1 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Tue, 16 Jul 2024 17:31:29 -0700 Subject: [PATCH 020/103] clang formatting --- src/daq/include/RAT/WaveformAnalysis.hh | 1 - src/daq/src/WaveformAnalysis.cc | 140 ++++++++++++------------ src/io/src/OutNtupleProc.cc | 4 +- 3 files changed, 72 insertions(+), 73 deletions(-) diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index 5974cfe9..b01129ba 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -71,7 +71,6 @@ class WaveformAnalysis { double DigitToVoltage(UShort_t digit) { return (digit - fPedestal) * fVoltageRes; } protected: - // Fit the digitized waveform using a lognormal function void FitWaveform(); diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 3736fdbc..73bc6da3 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -1,8 +1,9 @@ -#include -#include #include -#include #include +#include + +#include +#include namespace RAT { @@ -26,7 +27,7 @@ WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { fFitScale = fDigit->GetD("lognormal_scale"); } -void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer *fDigitizer) { +void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* fDigitizer) { fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns @@ -49,7 +50,7 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer Integrate(); SlidingIntegral(); - if(fRunFit){ + if (fRunFit) { FitWaveform(); } @@ -68,7 +69,7 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer digitpmt->SetPeakVoltage(fVoltagePeak); } -double WaveformAnalysis::RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer) { +double WaveformAnalysis::RunAnalysisOnTrigger(int pmtID, Digitizer* fDigitizer) { fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns @@ -80,7 +81,7 @@ double WaveformAnalysis::RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer) try { trigger_threshold = fDigit->GetD("trigger_voltage_threshold"); trigger_lookback = fDigit->GetD("trigger_lookback"); - } catch (DBNotFoundError &e) { + } catch (DBNotFoundError& e) { warn << "WaveformAnalysis: Trigger threshold and lookback not found in database. " << "Using the same parameters as PMT Waveforms." << newline; } @@ -279,74 +280,73 @@ void WaveformAnalysis::SlidingIntegral() { } } -double SingleLognormal(double* x, double* par){ - /* - Lognormal distribution - */ - double m = 10.5; - double s = 0.15; +double SingleLognormal(double* x, double* par) { + /* + Lognormal distribution + */ + double m = 10.5; + double s = 0.15; - double mag = par[0]; - double theta = par[1]; - double baseline = par[2]; + double mag = par[0]; + double theta = par[1]; + double baseline = par[2]; - if(x[0] <= theta){ - return baseline; - } + if (x[0] <= theta) { + return baseline; + } - double q = baseline - mag * TMath::LogNormal(x[0], s, theta, m); - return q; + double q = baseline - mag * TMath::LogNormal(x[0], s, theta, m); + return q; } -void WaveformAnalysis::FitWaveform(){ - /* - Fit the PMT pulse to a lognormal distribution - */ - // Fit around the peak - TH1D* wfm = new TH1D("wfm","wfm",fDigitWfm.size(),0,fDigitWfm.size()*fTimeStep); - for (UShort_t i = 0; i < fDigitWfm.size(); i++) { - wfm->SetBinContent(i, DigitToVoltage(fDigitWfm[i])); - // Arb. choice, TODO - wfm->SetBinError(i, fVoltageRes*2.0); - } - double bf = fDigitTime - fFitWindowLow; - double tf = fDigitTime + fFitWindowHigh; - - // Check the fit range is within the digitizer window - bf = (bf > 0) ? bf : 0; - tf = (tf > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : tf; - - // Check the timing range is within the digitizer window - double thigh = fDigitTime + fFitScale + fFitWindowHigh; - thigh = (thigh > fDigitWfm.size()*fTimeStep) ? fDigitWfm.size()*fTimeStep : thigh; - - double tmed = fDigitTime - fFitScale; - tmed = (tmed > 0) ? tmed : 0; - - double tlow = fDigitTime - fFitScale - fFitWindowLow; - tlow = (tlow > 0) ? tlow : 0; - - const int ndf = 3; - TF1* ln_fit = new TF1("ln_fit",SingleLognormal,bf,tf,ndf); - ln_fit->SetParameter(0, 40.0); - // Fit assumes SPE waveform of limited size - ln_fit->SetParLimits(0, 1.0, 400.0); - // Fitted time around the peak - ln_fit->SetParameter(1, tmed); - ln_fit->SetParLimits(1, tlow, thigh); - // Baseline centered around zero - ln_fit->SetParameter(2, 0.0); - ln_fit->SetParLimits(2, -1.0, 1.0); - wfm->Fit("ln_fit","0QR","",bf,tf); - - fFittedHeight = ln_fit->GetParameter(0); - fFittedTime = ln_fit->GetParameter(1) + fFitScale; - fFittedBaseline = ln_fit->GetParameter(2); - fChi2NDF = ln_fit->GetChisquare()/ln_fit->GetNDF(); - - delete wfm; - delete ln_fit; +void WaveformAnalysis::FitWaveform() { + /* + Fit the PMT pulse to a lognormal distribution + */ + // Fit around the peak + TH1D* wfm = new TH1D("wfm", "wfm", fDigitWfm.size(), 0, fDigitWfm.size() * fTimeStep); + for (UShort_t i = 0; i < fDigitWfm.size(); i++) { + wfm->SetBinContent(i, DigitToVoltage(fDigitWfm[i])); + // Arb. choice, TODO + wfm->SetBinError(i, fVoltageRes * 2.0); + } + double bf = fDigitTime - fFitWindowLow; + double tf = fDigitTime + fFitWindowHigh; + + // Check the fit range is within the digitizer window + bf = (bf > 0) ? bf : 0; + tf = (tf > fDigitWfm.size() * fTimeStep) ? fDigitWfm.size() * fTimeStep : tf; + + // Check the timing range is within the digitizer window + double thigh = fDigitTime + fFitScale + fFitWindowHigh; + thigh = (thigh > fDigitWfm.size() * fTimeStep) ? fDigitWfm.size() * fTimeStep : thigh; + + double tmed = fDigitTime - fFitScale; + tmed = (tmed > 0) ? tmed : 0; + + double tlow = fDigitTime - fFitScale - fFitWindowLow; + tlow = (tlow > 0) ? tlow : 0; + + const int ndf = 3; + TF1* ln_fit = new TF1("ln_fit", SingleLognormal, bf, tf, ndf); + ln_fit->SetParameter(0, 40.0); + // Fit assumes SPE waveform of limited size + ln_fit->SetParLimits(0, 1.0, 400.0); + // Fitted time around the peak + ln_fit->SetParameter(1, tmed); + ln_fit->SetParLimits(1, tlow, thigh); + // Baseline centered around zero + ln_fit->SetParameter(2, 0.0); + ln_fit->SetParLimits(2, -1.0, 1.0); + wfm->Fit("ln_fit", "0QR", "", bf, tf); + + fFittedHeight = ln_fit->GetParameter(0); + fFittedTime = ln_fit->GetParameter(1) + fFitScale; + fFittedBaseline = ln_fit->GetParameter(2); + fChi2NDF = ln_fit->GetChisquare() / ln_fit->GetNDF(); + + delete wfm; + delete ln_fit; } - } // namespace RAT diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 03b79dbe..3ecb1d0c 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -467,14 +467,14 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTTime.clear(); hitPMTCharge.clear(); } - if (options.digitizerhits){ + if (options.digitizerhits) { digitTime.clear(); digitCharge.clear(); digitNCrossings.clear(); digitPeak.clear(); digitPMTID.clear(); digitLocalTriggerTime.clear(); - if (options.digitizerfits){ + if (options.digitizerfits) { fitTime.clear(); fitBaseline.clear(); fitPeak.clear(); From b734c311d0740176adb4a8d6b1206dce4fe46987 Mon Sep 17 00:00:00 2001 From: James Shen Date: Wed, 17 Jul 2024 16:08:41 -0400 Subject: [PATCH 021/103] Fix syntax for default constructor in waveform analysis --- src/daq/src/WaveformAnalysis.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 1121158e..554b324f 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -4,7 +4,7 @@ namespace RAT { -WaveformAnalysis::WaveformAnalysis() { WaveformAnalysis(""); } +WaveformAnalysis::WaveformAnalysis() : WaveformAnalysis::WaveformAnalysis("") {} WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS", analyzer_name); From ace0bc2f4cf41b7de0437624c0c39e51077a7daf Mon Sep 17 00:00:00 2001 From: tannerbk Date: Wed, 17 Jul 2024 13:49:23 -0700 Subject: [PATCH 022/103] load shape/scale of lognormal from db --- src/daq/include/RAT/WaveformAnalysis.hh | 2 +- src/daq/src/WaveformAnalysis.cc | 11 ++++++++--- 2 files changed, 9 insertions(+), 4 deletions(-) diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index b01129ba..456ba4ed 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -70,10 +70,10 @@ class WaveformAnalysis { // ADC counts to voltage (mV) double DigitToVoltage(UShort_t digit) { return (digit - fPedestal) * fVoltageRes; } - protected: // Fit the digitized waveform using a lognormal function void FitWaveform(); + protected: // Digitizer settings DBLinkPtr fDigit; double fTimeStep; diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 73bc6da3..f90cf77a 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -284,13 +284,14 @@ double SingleLognormal(double* x, double* par) { /* Lognormal distribution */ - double m = 10.5; - double s = 0.15; double mag = par[0]; double theta = par[1]; double baseline = par[2]; + double m = par[3]; + double s = par[4]; + if (x[0] <= theta) { return baseline; } @@ -327,7 +328,7 @@ void WaveformAnalysis::FitWaveform() { double tlow = fDigitTime - fFitScale - fFitWindowLow; tlow = (tlow > 0) ? tlow : 0; - const int ndf = 3; + const int ndf = 5; TF1* ln_fit = new TF1("ln_fit", SingleLognormal, bf, tf, ndf); ln_fit->SetParameter(0, 40.0); // Fit assumes SPE waveform of limited size @@ -338,6 +339,10 @@ void WaveformAnalysis::FitWaveform() { // Baseline centered around zero ln_fit->SetParameter(2, 0.0); ln_fit->SetParLimits(2, -1.0, 1.0); + + ln_fit->FixParameter(3, fFitScale); + ln_fit->FixParameter(4, fFitShape); + wfm->Fit("ln_fit", "0QR", "", bf, tf); fFittedHeight = ln_fit->GetParameter(0); From 46140db87a639ce123aa039836e54440892a799d Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 18 Jul 2024 14:17:54 -0400 Subject: [PATCH 023/103] PMTInfo should write position in global coordinate system --- src/geo/include/RAT/PMTInfoParser.hh | 1 + src/geo/src/pmt/PMTFactoryBase.cc | 12 +++++++++--- src/geo/src/pmt/PMTInfoParser.cc | 8 ++++++-- 3 files changed, 16 insertions(+), 5 deletions(-) diff --git a/src/geo/include/RAT/PMTInfoParser.hh b/src/geo/include/RAT/PMTInfoParser.hh index 00663d23..6c884a9f 100644 --- a/src/geo/include/RAT/PMTInfoParser.hh +++ b/src/geo/include/RAT/PMTInfoParser.hh @@ -23,6 +23,7 @@ class PMTInfoParser { // Returns the offset between local and global coordinates // e.g. local = global - offset G4ThreeVector GetLocalOffset() { return fLocalOffset; } + static G4ThreeVector ComputeLocalOffset(const std::string &); // Returns the direction vector of the front face of the PMTs const std::vector &GetPMTDirections() const { return fDir; }; diff --git a/src/geo/src/pmt/PMTFactoryBase.cc b/src/geo/src/pmt/PMTFactoryBase.cc index a16815c2..651f6e07 100644 --- a/src/geo/src/pmt/PMTFactoryBase.cc +++ b/src/geo/src/pmt/PMTFactoryBase.cc @@ -9,6 +9,7 @@ #include #include #include +#include #include #include @@ -42,6 +43,7 @@ G4VPhysicalVolume *PMTFactoryBase::ConstructPMTs( if (phys_mother == 0) { Log::Die("PMTParser: PMT mother physical volume " + mother_name + " not found"); } + G4ThreeVector local_offset = PMTInfoParser::ComputeLocalOffset(mother_name); PMTConstruction *construction = PMTConstruction::NewConstruction(lpmt, mother); G4LogicalVolume *log_pmt = construction->BuildVolume(volume_name); @@ -234,6 +236,9 @@ G4VPhysicalVolume *PMTFactoryBase::ConstructPMTs( G4ThreeVector pmtpos = pmt_pos[i]; G4ThreeVector pmtdir = pmt_dir[i]; + // Compute PMT position in global coordinate system + // TODO: We should also account for a rotation of the mother volume at some point + G4ThreeVector pmtpos_global = pmtpos + local_offset; // Store individual efficiency EfficiencyCorrection[id] = pmt_effi_corr[i]; @@ -242,10 +247,11 @@ G4VPhysicalVolume *PMTFactoryBase::ConstructPMTs( // This goes into the DS by way of Gsim // NOTE: Since the BField stuff isn't used currently, add the efficiency here. // If we revive the BField code, this needs to be moved after so that the efficiency is correct - pmtinfo.AddPMT(TVector3(pmtpos.x(), pmtpos.y(), pmtpos.z()), TVector3(pmtdir.x(), pmtdir.y(), pmtdir.z()), - pmt_type[i], channel_number[i], pmt_model, pmt_effi_corr[i], individual_noise_rate[i], - individual_afterpulse_fraction[i]); + pmtinfo.AddPMT(TVector3(pmtpos_global.x(), pmtpos_global.y(), pmtpos_global.z()), + TVector3(pmtdir.x(), pmtdir.y(), pmtdir.z()), pmt_type[i], channel_number[i], pmt_model, + pmt_effi_corr[i], individual_noise_rate[i], individual_afterpulse_fraction[i]); + // TODO: Check if logic below should use pmtpos or pmtpos_global // if requested, generates the magnetic efficiency corrections as the PMTs // are created if (BFieldOn) { diff --git a/src/geo/src/pmt/PMTInfoParser.cc b/src/geo/src/pmt/PMTInfoParser.cc index adaf64a0..6cb0e6fd 100644 --- a/src/geo/src/pmt/PMTInfoParser.cc +++ b/src/geo/src/pmt/PMTInfoParser.cc @@ -96,15 +96,19 @@ PMTInfoParser::PMTInfoParser(DBLinkPtr lpos_table, const std::string &mother_nam if (phys_mother == 0) { Log::Die("PMTParser: PMT mother physical volume " + mother_name + " not found"); } + fLocalOffset = ComputeLocalOffset(mother_name); +} +G4ThreeVector PMTInfoParser::ComputeLocalOffset(const std::string &mother_name) { // PMTINFO is always in global coordinates - so calculate the local offset first - fLocalOffset = G4ThreeVector(0.0, 0.0, 0.0); + G4ThreeVector offset(0.0, 0.0, 0.0); for (string parent_name = mother_name; parent_name != "";) { G4VPhysicalVolume *parent_phys = GeoFactory::FindPhysMother(parent_name); - fLocalOffset -= parent_phys->GetFrameTranslation(); + offset -= parent_phys->GetFrameTranslation(); DBLinkPtr parent_table = DB::Get()->GetLink("GEO", parent_name); parent_name = parent_table->GetS("mother"); } + return offset; } G4RotationMatrix PMTInfoParser::GetPMTRotation(int i) const { From 476a5057da80557ea705391a745086beba4788a7 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Fri, 19 Jul 2024 10:10:12 -0700 Subject: [PATCH 024/103] Add try block to check analysis params exist --- src/daq/src/WaveformAnalysis.cc | 36 +++++++++++++++++++-------------- 1 file changed, 21 insertions(+), 15 deletions(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index dd4fc570..cc4a89c5 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -10,21 +10,27 @@ namespace RAT { WaveformAnalysis::WaveformAnalysis() : WaveformAnalysis::WaveformAnalysis("") {} WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { - fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS", analyzer_name); - fPedWindowLow = fDigit->GetI("pedestal_window_low"); - fPedWindowHigh = fDigit->GetI("pedestal_window_high"); - fLookback = fDigit->GetD("lookback"); - fIntWindowLow = fDigit->GetD("integration_window_low"); - fIntWindowHigh = fDigit->GetD("integration_window_high"); - fConstFrac = fDigit->GetD("constant_fraction"); - fThreshold = fDigit->GetD("voltage_threshold"); - fSlidingWindow = fDigit->GetD("sliding_window_width"); - fChargeThresh = fDigit->GetD("sliding_window_thresh"); - fRunFit = fDigit->GetI("run_fitting"); - fFitWindowLow = fDigit->GetD("fit_window_low"); - fFitWindowHigh = fDigit->GetD("fit_window_high"); - fFitShape = fDigit->GetD("lognormal_shape"); - fFitScale = fDigit->GetD("lognormal_scale"); + try { + fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS", analyzer_name); + fPedWindowLow = fDigit->GetI("pedestal_window_low"); + fPedWindowHigh = fDigit->GetI("pedestal_window_high"); + fLookback = fDigit->GetD("lookback"); + fIntWindowLow = fDigit->GetD("integration_window_low"); + fIntWindowHigh = fDigit->GetD("integration_window_high"); + fConstFrac = fDigit->GetD("constant_fraction"); + fThreshold = fDigit->GetD("voltage_threshold"); + fSlidingWindow = fDigit->GetD("sliding_window_width"); + fChargeThresh = fDigit->GetD("sliding_window_thresh"); + fRunFit = fDigit->GetI("run_fitting"); + if (fRunFit) { + fFitWindowLow = fDigit->GetD("fit_window_low"); + fFitWindowHigh = fDigit->GetD("fit_window_high"); + fFitShape = fDigit->GetD("lognormal_shape"); + fFitScale = fDigit->GetD("lognormal_scale"); + } + } catch (DBNotFoundError) { + RAT::Log::Die("WaveformAnalysis: Unable to find analysis parameters."); + } } void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* fDigitizer) { From 9ac2116e3a0fb239f86cc935fc76e97fa56aa7be Mon Sep 17 00:00:00 2001 From: James Shen Date: Fri, 19 Jul 2024 16:13:16 -0400 Subject: [PATCH 025/103] Allow analyzer index to be specified via SplitEVDAQ --- src/daq/src/SplitEVDAQProc.cc | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index 8076842a..b3f086ca 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -30,9 +30,15 @@ SplitEVDAQProc::SplitEVDAQProc() : Processor("splitevdaq") { fDigitizerType = ldaq->GetS("digitizer_name"); fDigitize = ldaq->GetZ("digitize"); fAnalyze = ldaq->GetZ("analyze"); + std::string analyzer_name = ""; + try { + analyzer_name = ldaq->GetZ("analyzer_name"); + } catch (DBNotFoundError &e) { + info << "Analyzer not specified, using default"; + } fDigitizer = new Digitizer(fDigitizerType); - fWaveformAnalysis = new WaveformAnalysis(); + fWaveformAnalysis = new WaveformAnalysis(analyzer_name); } void SplitEVDAQProc::BeginOfRun(DS::Run *run) { From ab5602c32beadce2fb1700ab456b39467b63e0cc Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Fri, 19 Jul 2024 16:56:36 -0400 Subject: [PATCH 026/103] Allow analyzer index to be specified via SplitEVDAQ (#149) -- fixing type in #148 --- src/daq/src/SplitEVDAQProc.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index b3f086ca..95a11d7f 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -32,7 +32,7 @@ SplitEVDAQProc::SplitEVDAQProc() : Processor("splitevdaq") { fAnalyze = ldaq->GetZ("analyze"); std::string analyzer_name = ""; try { - analyzer_name = ldaq->GetZ("analyzer_name"); + analyzer_name = ldaq->GetS("analyzer_name"); } catch (DBNotFoundError &e) { info << "Analyzer not specified, using default"; } From fb2bc9702d5b2cd243e59fd89242c8c88d1d2a22 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Mon, 22 Jul 2024 18:08:40 -0700 Subject: [PATCH 027/103] Add option to specify waveform analysis name --- ratdb/DAQ.ratdb | 1 + src/daq/include/RAT/SplitEVDAQProc.hh | 2 ++ src/daq/src/SplitEVDAQProc.cc | 13 ++++++++++--- 3 files changed, 13 insertions(+), 3 deletions(-) diff --git a/ratdb/DAQ.ratdb b/ratdb/DAQ.ratdb index a3c66bb7..80dd0c02 100644 --- a/ratdb/DAQ.ratdb +++ b/ratdb/DAQ.ratdb @@ -32,6 +32,7 @@ trigger_on_noise: 1, digitizer_name: "V1730", digitize: true, // Run digitization of PMT waveforms analyze: true, // Run analysis of digitized waveforms +analyzer_name: "", // default analysis } { diff --git a/src/daq/include/RAT/SplitEVDAQProc.hh b/src/daq/include/RAT/SplitEVDAQProc.hh index d31fa08c..9c8f1860 100644 --- a/src/daq/include/RAT/SplitEVDAQProc.hh +++ b/src/daq/include/RAT/SplitEVDAQProc.hh @@ -16,6 +16,7 @@ class SplitEVDAQProc : public Processor { virtual Processor::Result DSEvent(DS::Root *ds); void SetD(std::string param, double value); void SetI(std::string param, int value); + void SetS(std::string param, std::string value); void BeginOfRun(DS::Run *run); @@ -31,6 +32,7 @@ class SplitEVDAQProc : public Processor { double fMaxHitTime; bool fDigitize; bool fAnalyze; + std::string fAnalyzerName; int fTriggerOnNoise; DBLinkPtr ldaq; diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index 95a11d7f..40df3eba 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -30,15 +30,15 @@ SplitEVDAQProc::SplitEVDAQProc() : Processor("splitevdaq") { fDigitizerType = ldaq->GetS("digitizer_name"); fDigitize = ldaq->GetZ("digitize"); fAnalyze = ldaq->GetZ("analyze"); - std::string analyzer_name = ""; + fAnalyzerName = ""; try { - analyzer_name = ldaq->GetS("analyzer_name"); + fAnalyzerName = ldaq->GetS("analyzer_name"); } catch (DBNotFoundError &e) { info << "Analyzer not specified, using default"; } fDigitizer = new Digitizer(fDigitizerType); - fWaveformAnalysis = new WaveformAnalysis(analyzer_name); + fWaveformAnalysis = new WaveformAnalysis(fAnalyzerName); } void SplitEVDAQProc::BeginOfRun(DS::Run *run) { @@ -221,4 +221,11 @@ void SplitEVDAQProc::SetI(std::string param, int value) { throw ParamUnknown(param); } +void SplitEVDAQProc::SetS(std::string param, std::string value) { + if (param == "analyzer_name") + fAnalyzerName = value; + else + throw ParamUnknown(param); +} + } // namespace RAT From 68b1d9b5c81a737f5171ff68985b675d5b293390 Mon Sep 17 00:00:00 2001 From: tannerbk Date: Mon, 22 Jul 2024 18:23:55 -0700 Subject: [PATCH 028/103] float shape param in lognormal fit --- src/daq/src/WaveformAnalysis.cc | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index cc4a89c5..7bef6643 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -345,14 +345,15 @@ void WaveformAnalysis::FitWaveform() { // Baseline centered around zero ln_fit->SetParameter(2, 0.0); ln_fit->SetParLimits(2, -1.0, 1.0); + ln_fit->SetParameter(3, fFitScale); + ln_fit->SetParLimits(3, fFitScale - 5.0, fFitScale + 5.0); - ln_fit->FixParameter(3, fFitScale); ln_fit->FixParameter(4, fFitShape); wfm->Fit("ln_fit", "0QR", "", bf, tf); fFittedHeight = ln_fit->GetParameter(0); - fFittedTime = ln_fit->GetParameter(1) + fFitScale; + fFittedTime = ln_fit->GetParameter(1) + ln_fit->GetParameter(2); fFittedBaseline = ln_fit->GetParameter(2); fChi2NDF = ln_fit->GetChisquare() / ln_fit->GetNDF(); From 9f43065ddb9be8adc5b375fcc60db293b9a6e1ea Mon Sep 17 00:00:00 2001 From: tannerbk Date: Mon, 22 Jul 2024 18:28:06 -0700 Subject: [PATCH 029/103] fix typo --- src/daq/src/WaveformAnalysis.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 7bef6643..9131e397 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -353,7 +353,7 @@ void WaveformAnalysis::FitWaveform() { wfm->Fit("ln_fit", "0QR", "", bf, tf); fFittedHeight = ln_fit->GetParameter(0); - fFittedTime = ln_fit->GetParameter(1) + ln_fit->GetParameter(2); + fFittedTime = ln_fit->GetParameter(1) + ln_fit->GetParameter(3); fFittedBaseline = ln_fit->GetParameter(2); fChi2NDF = ln_fit->GetChisquare() / ln_fit->GetNDF(); From 78f07fa45c2e8f107c6a0053186b92c56d8a8c50 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 25 Jul 2024 15:29:18 -0400 Subject: [PATCH 030/103] add trigger deltat and digitnhit to ntuples --- src/io/include/RAT/OutNtupleProc.hh | 2 ++ src/io/src/OutNtupleProc.cc | 9 +++++++++ 2 files changed, 11 insertions(+) diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index 7e997a1e..526663f5 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -86,6 +86,7 @@ class OutNtupleProc : public Processor { int subev; int nhits; double triggerTime; + double timeSinceLastTrigger_us; // MC Summary Information double scintEdep; double scintEdepQuenched; @@ -128,6 +129,7 @@ class OutNtupleProc : public Processor { std::vector hitPMTTime; std::vector hitPMTCharge; // Store PMT information from digitized waveform + int digitNhits; std::vector digitPeak; std::vector digitTime; std::vector digitCharge; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 3ecb1d0c..1b6b46b2 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -97,6 +97,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("subev", &subev); outputTree->Branch("nhits", &nhits); outputTree->Branch("triggerTime", &triggerTime); + outputTree->Branch("timeSinceLastTrigger_us", &timeSinceLastTrigger_us); // MC Information outputTree->Branch("mcid", &mcid); outputTree->Branch("mcparticlecount", &mcpcount); @@ -130,6 +131,7 @@ bool OutNtupleProc::OpenFile(std::string filename) { } if (options.digitizerhits) { // Output of the waveform analysis + outputTree->Branch("digitNhits", &digitNhits); outputTree->Branch("digitPMTID", &digitPMTID); outputTree->Branch("digitTime", &digitTime); outputTree->Branch("digitCharge", &digitCharge); @@ -356,6 +358,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { DS::EV *ev = ds->GetEV(subev); evid = ev->GetID(); triggerTime = ev->GetCalibratedTriggerTime(); + timeSinceLastTrigger_us = ev->GetDeltaT(); auto fitVector = ev->GetFitResults(); std::map fitvalues; std::map fitvalids; @@ -428,6 +431,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { } } if (options.digitizerhits) { + digitNhits = 0; digitTime.clear(); digitCharge.clear(); digitNCrossings.clear(); @@ -446,6 +450,9 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { digitPMTID.push_back(digitpmt->GetID()); digitTime.push_back(digitpmt->GetDigitizedTime()); digitCharge.push_back(digitpmt->GetDigitizedCharge()); + if (digitpmt->GetNCrossings() > 0) { + digitNhits++; + } digitNCrossings.push_back(digitpmt->GetNCrossings()); digitPeak.push_back(digitpmt->GetPeakVoltage()); digitLocalTriggerTime.push_back(digitpmt->GetLocalTriggerTime()); @@ -462,12 +469,14 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { if (options.untriggered && ds->GetEVCount() == 0) { evid = -1; triggerTime = 0; + timeSinceLastTrigger_us = 0; if (options.pmthits) { hitPMTID.clear(); hitPMTTime.clear(); hitPMTCharge.clear(); } if (options.digitizerhits) { + digitNhits = 0; digitTime.clear(); digitCharge.clear(); digitNCrossings.clear(); From d7952af96d2f356db1e2c3dc7db2b759f015b3a9 Mon Sep 17 00:00:00 2001 From: James Shen Date: Fri, 26 Jul 2024 15:02:45 -0400 Subject: [PATCH 031/103] Allow a timing offset to be applied in waveform analysis --- src/daq/include/RAT/WaveformAnalysis.hh | 2 +- src/daq/src/WaveformAnalysis.cc | 7 ++++--- src/ds/include/RAT/DS/DigitPMT.hh | 7 ++++++- 3 files changed, 11 insertions(+), 5 deletions(-) diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index 456ba4ed..59d47c18 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -31,7 +31,7 @@ class WaveformAnalysis { WaveformAnalysis(std::string analyzer_name); virtual ~WaveformAnalysis(){}; - void RunAnalysis(DS::DigitPMT *pmt, int pmtID, Digitizer *fDigitizer); + void RunAnalysis(DS::DigitPMT *pmt, int pmtID, Digitizer *fDigitizer, double timeOffset = 0.0); double RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer); // Calculate baseline (in mV) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index cc4a89c5..c4165674 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -33,7 +33,7 @@ WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { } } -void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* fDigitizer) { +void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* fDigitizer, double timeOffset) { fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns @@ -60,8 +60,9 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* FitWaveform(); } - digitpmt->SetDigitizedTime(fDigitTime); - digitpmt->SetFittedTime(fFittedTime); + digitpmt->SetDigitizedTime(fDigitTime - timeOffset); + digitpmt->SetFittedTime(fFittedTime - timeOffset); + digitpmt->SetTimeOffsetApplied(timeOffset); digitpmt->SetFittedBaseline(fFittedBaseline); digitpmt->SetFittedHeight(fFittedHeight); digitpmt->SetDigitizedCharge(fCharge); diff --git a/src/ds/include/RAT/DS/DigitPMT.hh b/src/ds/include/RAT/DS/DigitPMT.hh index f45dca7f..3ec28b4e 100644 --- a/src/ds/include/RAT/DS/DigitPMT.hh +++ b/src/ds/include/RAT/DS/DigitPMT.hh @@ -80,7 +80,11 @@ class DigitPMT : public TObject { virtual void SetLocalTriggerTime(Double_t _trigger_time) { this->local_trigger_time = _trigger_time; } virtual Double_t GetLocalTriggerTime() { return local_trigger_time; } - ClassDef(DigitPMT, 3); + /** Time offset applied to the waveform */ + virtual void SetTimeOffsetApplied(Double_t _time_offset) { this->time_offset_applied = _time_offset; } + virtual Double_t GetTimeOffsetApplied() { return time_offset_applied; } + + ClassDef(DigitPMT, 4); protected: Int_t id = -9999; @@ -98,6 +102,7 @@ class DigitPMT : public TObject { Double_t fMag = -9999; Double_t fBas = -9999; Double_t local_trigger_time = -9999; + Double_t time_offset_applied = 0; }; } // namespace DS From 1b86208b85b00c936fb56d1b997bdfecf0f8dd59 Mon Sep 17 00:00:00 2001 From: James Shen Date: Fri, 26 Jul 2024 15:16:58 -0400 Subject: [PATCH 032/103] Use digitizer offset for splitevdaq --- src/daq/src/SplitEVDAQProc.cc | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index 95a11d7f..e0197041 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -177,7 +177,9 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { if (fAnalyze) { DS::DigitPMT *digitpmt = ev->AddNewDigitPMT(); digitpmt->SetID(pmtID); - fWaveformAnalysis->RunAnalysis(digitpmt, pmtID, fDigitizer); + double timing_offset = + fDigitizer->fPMTWaveformGenerators[pmtinfo->GetModelNameByID(pmtID)]->fPMTPulseTimeOffset; + fWaveformAnalysis->RunAnalysis(digitpmt, pmtID, fDigitizer, timing_offset); } } } From 2426a8924669d412c739d93865ff1db66fdde319 Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 30 Jul 2024 13:22:20 -0400 Subject: [PATCH 033/103] patch silly ushort conversion --- src/daq/src/Digitizer.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/daq/src/Digitizer.cc b/src/daq/src/Digitizer.cc index bc337034..93883879 100644 --- a/src/daq/src/Digitizer.cc +++ b/src/daq/src/Digitizer.cc @@ -42,7 +42,7 @@ void Digitizer::DigitizeSum(DS::EV* ev) { std::map> waveforms = fDigitWaveForm; for (std::map>::const_iterator it = waveforms.begin(); it != waveforms.end(); it++) { - digit.SetWaveform(it->first, waveforms[UShort_t(it->first)]); + digit.SetWaveform(it->first, waveforms[it->first]); } digit.SetDigitName(fDigitName); From ae071a25983c87051e46e67e7fe12708097e310e Mon Sep 17 00:00:00 2001 From: So Young Jeon Date: Sun, 4 Aug 2024 21:43:40 -0400 Subject: [PATCH 034/103] Add materials needed for Eos Directional Source --- ratdb/MATERIALS.ratdb | 25 +++++++++++++++++++++++++ ratdb/OPTICS.ratdb | 14 ++++++++++++++ ratdb/beta_decays.dat | 11 +++++++++++ 3 files changed, 50 insertions(+) diff --git a/ratdb/MATERIALS.ratdb b/ratdb/MATERIALS.ratdb index 6f9f91ac..2a4a1e53 100644 --- a/ratdb/MATERIALS.ratdb +++ b/ratdb/MATERIALS.ratdb @@ -68,6 +68,19 @@ elemprop: [1.0], } +{ +name: "MATERIAL", +index: "brass", +valid_begin : [0, 0], +valid_end : [0, 0], +density: 8.73, +nelements: 2, +nmaterials: 0, +elements: ["Copper", "Zinc"], +elemprop: [0.66, 0.34], +} + + { name: "MATERIAL", index: "steel", @@ -894,6 +907,18 @@ elements: ["Hydrogen", "Carbon","Oxygen"], elemprop: [0.067135, 0.400017, 0.532848], } +{ +name: "MATERIAL", +index: "delrin_black", +valid_begin : [0, 0], +valid_end : [0, 0], +density: 1.425, // from NIST database +nelements: 3, +nmaterials: 0, +elements: ["Hydrogen", "Carbon","Oxygen"], +elemprop: [0.067135, 0.400017, 0.532848], +} + { name: "MATERIAL", index: "pet", // polyethylene terphthalate diff --git a/ratdb/OPTICS.ratdb b/ratdb/OPTICS.ratdb index 500d07e6..90b98eed 100644 --- a/ratdb/OPTICS.ratdb +++ b/ratdb/OPTICS.ratdb @@ -713,6 +713,20 @@ ABSLENGTH_value2: [1e-3, 1e-3, 1.8, 28.2, 196.2, 529.2, 5865.2, 9000.0, PROPERTY_LIST: ["RINDEX", "ABSLENGTH", ] } +{ +name: "OPTICS", +index: "delrin_black", // identical to acrylic_black +valid_begin : [0, 0], +valid_end : [0, 0], +REFLECTIVITY_option: "wavelength", +REFLECTIVITY_value1: [60.0, 800.0, ], +REFLECTIVITY_value2: [0.0, 0.0, ], +ABSLENGTH_option: "wavelength", +ABSLENGTH_value1: [60.0, 800.0, ], +ABSLENGTH_value2: [1e-3, 1e-3, ], +PROPERTY_LIST: ["REFLECTIVITY", "ABSLENGTH", ] +} + { name: "OPTICS", index: "nylon", diff --git a/ratdb/beta_decays.dat b/ratdb/beta_decays.dat index 5de55992..755984c8 100644 --- a/ratdb/beta_decays.dat +++ b/ratdb/beta_decays.dat @@ -147,6 +147,17 @@ DECAY: 90Y 40 90 2.30e+05 1.00001 0 2.28 0 0. 0. 0. 0. 0. 0. 0. 0. 0. +DECAY: 106Rh +45 106 2.98e+01 +0.00299 0 1.5395 3 0.8735 0.6162 0.5119 0. 0. 0. 0. 0. 0. +0.00460 0 1.5395 2 0.8735 1.1281 0. 0. 0. 0. 0. 0. 0. +0.00876 0 2.4130 2 0.6162 0.5119 0. 0. 0. 0. 0. 0. 0. +0.01100 0 2.4130 1 1.1281 0. 0. 0. 0. 0. 0. 0. 0. +0.02870 0 1.9787 2 1.0504 0.5119 0. 0. 0. 0. 0. 0. 0. +0.12870 0 2.4072 2 0.6219 0.5119 0. 0. 0. 0. 0. 0. 0. +0.20970 0 3.0291 1 0.5119 0. 0. 0. 0. 0. 0. 0. 0. +1.00001 0 3.5410 0 0. 0. 0. 0. 0. 0. 0. 0. 0. + DECAY: 208Tl 82 208 183.18 0.000521 1 0.5115 3 1.2828 0.5831 2.6146 0. 0. 0. 0. 0. 0. From 4ca48a07f7181f2d3d1dc5806f545f6cf73b9633 Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 6 Aug 2024 14:05:28 -0400 Subject: [PATCH 035/103] Use correct QE curve for R7081 --- ratdb/PMT.ratdb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/ratdb/PMT.ratdb b/ratdb/PMT.ratdb index de3b3692..0a0593ae 100644 --- a/ratdb/PMT.ratdb +++ b/ratdb/PMT.ratdb @@ -239,7 +239,7 @@ construction: "toroidal", dynode_material: "stainless_steel", glass_material: "glass", pmt_vacuum_material: "pmt_vacuum", -photocathode_surface: "photocathode_R1408", //need to implement photocathode surface +photocathode_surface: "photocathode_R7081HQE", mirror_surface: "mirror", dynode_surface: "stainless_steel", @@ -265,7 +265,7 @@ construction: "toroidal", dynode_material: "stainless_steel", glass_material: "glass", pmt_vacuum_material: "pmt_vacuum", -photocathode_surface: "photocathode_R1408", //used the 1408 photocathode in SNO+ rat +photocathode_surface: "photocathode_R7081HQE", // using HQE curve for now mirror_surface: "mirror", dynode_surface: "stainless_steel", @@ -292,7 +292,7 @@ construction: "revolution", dynode_material: "stainless_steel", glass_material: "glass", pmt_vacuum_material: "pmt_vacuum", -photocathode_surface: "photocathode_R1408", //used the 1408 photocathode in SNO+ rat +photocathode_surface: "photocathode_R7081HQE", // using HQE curve for now mirror_surface: "mirror", dynode_surface: "stainless_steel", From 32b6a96d886bde9c1d944150ef4de08c2d225584 Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Tue, 6 Aug 2024 16:26:07 -0400 Subject: [PATCH 036/103] =?UTF-8?q?adding=20material=20index=20and=20effic?= =?UTF-8?q?iency=20distribution=20from=20R7081-20=20data=20=E2=80=A6=20(#2?= =?UTF-8?q?)?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * adding material index and efficiency distribution from R7081-20 data sheet * Updating quantum efficiency from r7081-20 datasheet * Updating quantum efficiency from r7081-20 datasheet --------- Co-authored-by: Eliot Keener --- ratdb/MATERIALS.ratdb | 13 ++++++++ ratdb/OPTICS_Photocathode.ratdb | 55 +++++++++++++++++++++++++++++++++ 2 files changed, 68 insertions(+) diff --git a/ratdb/MATERIALS.ratdb b/ratdb/MATERIALS.ratdb index 6f9f91ac..48d317a2 100644 --- a/ratdb/MATERIALS.ratdb +++ b/ratdb/MATERIALS.ratdb @@ -500,6 +500,19 @@ elements: ["Potassium"], elemprop: [1.0], } +// E.Keener at Penn, copied from photocathode_R7081HQE +{ +name: "MATERIAL", +index: "photocathode_R7081", +valid_begin : [0, 0], +valid_end : [0, 0], +density: 5.0, +nelements: 1, +nmaterials: 0, +elements: ["Potassium"], +elemprop: [1.0], +} + { name: "MATERIAL", index: "photocathode_R3600", diff --git a/ratdb/OPTICS_Photocathode.ratdb b/ratdb/OPTICS_Photocathode.ratdb index 4deca14a..4e6858d2 100644 --- a/ratdb/OPTICS_Photocathode.ratdb +++ b/ratdb/OPTICS_Photocathode.ratdb @@ -291,4 +291,59 @@ THICKNESS_value2: [26e-6, 26e-6, ], PROPERTY_LIST: ["EFFICIENCY", "RINDEX", "KINDEX", "THICKNESS", ] +} + +{ +// E.Keener at Penn, copied from photocathode_R7081HQE, quantum efficiency data from R7081-20 datasheet +name: "OPTICS", +index: "photocathode_R7081", +valid_begin : [0, 0], +valid_end : [0, 0], +photocathode: 1, + + +EFFICIENCY_option: "wavelength", +EFFICIENCY_value1: [277.03253918, 279.28433418, 280.42931468, 281.57429519, 283.82768043, + 283.85630495, 286.1160512 , 286.14467571, 288.40124146, 291.76780219, + 296.24912868, 300.73681616, 302.99020141, 306.35835239, 308.61650839, + 311.98465938, 317.58075161, 328.73795054, 344.34308069, 364.38978105, + 387.76964688, 407.80680574, 428.95395959, 450.09793294, 469.01396505, + 489.03999215, 506.83966827, 524.63139314, 541.30835226, 553.53260942, + 566.86368106, 582.42428419, 594.64536084, 605.75167175, 614.63163168, + 621.28206012, 629.04566405, 635.69768274, 644.57287191, 652.33647585, + 657.87849955, 663.40939149, 667.83664945, 674.48548764, 677.79479935, + 683.3288718 , 687.75612975, 693.28861195, 699.93904039, 704.36311785, + 709.90196104] + +EFFICIENCY_value2: [1.01037329e-03, 1.31460227e-03, 1.82669126e-03, 2.53825894e-03, 3.35730906e-03, + 4.51401598e-03, 6.37661202e-03, 8.57357128e-03, 1.17193335e-02, 1.55014228e-02, + 2.08447332e-02, 2.99359208e-02, 3.95956995e-02, 5.32426355e-02, 7.39849817e-02, + 9.94844254e-02, 1.35999090e-01, 1.76992368e-01, 2.19279210e-01, 2.42154895e-01, + 2.50413246e-01, 2.50550824e-01, 2.42583844e-01, 2.27270025e-01, 2.09436834e-01, + 1.86763270e-01, 1.66534175e-01, 1.36773163e-01, 1.10494913e-01, 8.92546121e-02, + 6.75088638e-02, 5.27719554e-02, 4.12482776e-02, 3.17140950e-02, 2.43821681e-02, + 1.81376102e-02, 1.34927682e-02, 1.02035590e-02, 7.46694670e-03, 5.55474397e-03, + 4.34097381e-03, 3.02350125e-03, 2.32421952e-03, 1.70075600e-03, 1.24442040e-03, + 8.95727402e-04, 6.88561683e-04, 4.87538273e-04, 3.62674030e-04, 2.69772513e-04, + 2.04002300e-04] + +RINDEX_option: "wavelength", +RINDEX_value1: [60.0, 200.0, 380.0, 395.0, 410.0, 425.0, 440.0, 455.0, 470.0, 485.0, 500.0, 515.0, 530.0, 545.0, 560.0, 575.0, 590.0, 605.0, 620.0, 635.0, 650.0, 665.0, 680.0, 800.0, ], +RINDEX_value2: [1.0, 1.0, 1.92, 2.18, 2.38, 2.61, 2.70, 2.87, 3.00, 3.00, 3.00, 3.09, 3.26, 3.20, 3.12, 3.06, 3.01, 2.98, 2.96, 2.95, 2.95, 2.95, 2.96, 3.0, ], + + +//RINDEX_option: "wavelength", +//RINDEX_value1: [60.0, 800.0, ], +//RINDEX_value2: [1.6, 1.6, ], + + +KINDEX_option: "wavelength", +KINDEX_value1: [60.0, 200.0, 380.0, 395.0, 410.0, 425.0, 440.0, 455.0, 470.0, 485.0, 500.0, 515.0, 530.0, 545.0, 560.0, 575.0, 590.0, 605.0, 620.0, 635.0, 650.0, 665.0, 680.0, 800.0, ], +KINDEX_value2: [3.0, 3.0, 1.69, 1.69, 1.71, 1.53, 1.50, 1.44, 1.34, 1.11, 1.06, 1.05, 0.86, 0.63, 0.53, 0.46, 0.42, 0.38, 0.37, 0.35, 0.34, 0.34, 0.33, 0.1, ], + +THICKNESS_value1: [188.0, 0.0, ], +THICKNESS_value2: [26e-6, 26e-6, ], +PROPERTY_LIST: ["EFFICIENCY", "RINDEX", "KINDEX", "THICKNESS", ] + + } From 195320131ccf77bac03d7dfc89de0f61ea286c50 Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 6 Aug 2024 16:28:23 -0400 Subject: [PATCH 037/103] Use seperate QE curve for r7081 non-hqe --- ratdb/PMT.ratdb | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/ratdb/PMT.ratdb b/ratdb/PMT.ratdb index 0a0593ae..ab75f8c5 100644 --- a/ratdb/PMT.ratdb +++ b/ratdb/PMT.ratdb @@ -265,7 +265,7 @@ construction: "toroidal", dynode_material: "stainless_steel", glass_material: "glass", pmt_vacuum_material: "pmt_vacuum", -photocathode_surface: "photocathode_R7081HQE", // using HQE curve for now +photocathode_surface: "photocathode_R7081", mirror_surface: "mirror", dynode_surface: "stainless_steel", @@ -292,7 +292,7 @@ construction: "revolution", dynode_material: "stainless_steel", glass_material: "glass", pmt_vacuum_material: "pmt_vacuum", -photocathode_surface: "photocathode_R7081HQE", // using HQE curve for now +photocathode_surface: "photocathode_R7081", mirror_surface: "mirror", dynode_surface: "stainless_steel", @@ -434,7 +434,7 @@ construction: "toroidal", dynode_material: "stainless_steel", glass_material: "glass", pmt_vacuum_material: "pmt_vacuum", -photocathode_surface: "photocathode_R7081HQE", +photocathode_surface: "photocathode_R7081", photocathode_MINrho: 110.0, photocathode_MAXrho: 126.5, mirror_surface: "mirror", From a1e67fc0976b36695e05aa97d35bf4a82081027f Mon Sep 17 00:00:00 2001 From: James Shen Date: Wed, 7 Aug 2024 12:58:14 -0400 Subject: [PATCH 038/103] Remove commented-out RINDEX values --- ratdb/OPTICS_Photocathode.ratdb | 11 ----------- 1 file changed, 11 deletions(-) diff --git a/ratdb/OPTICS_Photocathode.ratdb b/ratdb/OPTICS_Photocathode.ratdb index 4e6858d2..a0398ce8 100644 --- a/ratdb/OPTICS_Photocathode.ratdb +++ b/ratdb/OPTICS_Photocathode.ratdb @@ -277,11 +277,6 @@ RINDEX_value1: [60.0, 200.0, 380.0, 395.0, 410.0, 425.0, 440.0, 455.0, 470.0, 48 RINDEX_value2: [1.0, 1.0, 1.92, 2.18, 2.38, 2.61, 2.70, 2.87, 3.00, 3.00, 3.00, 3.09, 3.26, 3.20, 3.12, 3.06, 3.01, 2.98, 2.96, 2.95, 2.95, 2.95, 2.96, 3.0, ], -//RINDEX_option: "wavelength", -//RINDEX_value1: [60.0, 800.0, ], -//RINDEX_value2: [1.6, 1.6, ], - - KINDEX_option: "wavelength", KINDEX_value1: [60.0, 200.0, 380.0, 395.0, 410.0, 425.0, 440.0, 455.0, 470.0, 485.0, 500.0, 515.0, 530.0, 545.0, 560.0, 575.0, 590.0, 605.0, 620.0, 635.0, 650.0, 665.0, 680.0, 800.0, ], KINDEX_value2: [3.0, 3.0, 1.69, 1.69, 1.71, 1.53, 1.50, 1.44, 1.34, 1.11, 1.06, 1.05, 0.86, 0.63, 0.53, 0.46, 0.42, 0.38, 0.37, 0.35, 0.34, 0.34, 0.33, 0.1, ], @@ -331,12 +326,6 @@ RINDEX_option: "wavelength", RINDEX_value1: [60.0, 200.0, 380.0, 395.0, 410.0, 425.0, 440.0, 455.0, 470.0, 485.0, 500.0, 515.0, 530.0, 545.0, 560.0, 575.0, 590.0, 605.0, 620.0, 635.0, 650.0, 665.0, 680.0, 800.0, ], RINDEX_value2: [1.0, 1.0, 1.92, 2.18, 2.38, 2.61, 2.70, 2.87, 3.00, 3.00, 3.00, 3.09, 3.26, 3.20, 3.12, 3.06, 3.01, 2.98, 2.96, 2.95, 2.95, 2.95, 2.96, 3.0, ], - -//RINDEX_option: "wavelength", -//RINDEX_value1: [60.0, 800.0, ], -//RINDEX_value2: [1.6, 1.6, ], - - KINDEX_option: "wavelength", KINDEX_value1: [60.0, 200.0, 380.0, 395.0, 410.0, 425.0, 440.0, 455.0, 470.0, 485.0, 500.0, 515.0, 530.0, 545.0, 560.0, 575.0, 590.0, 605.0, 620.0, 635.0, 650.0, 665.0, 680.0, 800.0, ], KINDEX_value2: [3.0, 3.0, 1.69, 1.69, 1.71, 1.53, 1.50, 1.44, 1.34, 1.11, 1.06, 1.05, 0.86, 0.63, 0.53, 0.46, 0.42, 0.38, 0.37, 0.35, 0.34, 0.34, 0.33, 0.1, ], From e6bf95614e82294b7233aa86911d7ea08121aee8 Mon Sep 17 00:00:00 2001 From: Eliot Keener Date: Wed, 7 Aug 2024 14:42:54 -0400 Subject: [PATCH 039/103] Include source links for new charge distributions --- ratdb/PMTCHARGE.ratdb | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/ratdb/PMTCHARGE.ratdb b/ratdb/PMTCHARGE.ratdb index 1464e05f..52198c85 100644 --- a/ratdb/PMTCHARGE.ratdb +++ b/ratdb/PMTCHARGE.ratdb @@ -20,7 +20,7 @@ charge:[0., 0.10204082, 0.20408163, 0.30612245, 0.40816327, 0.51020408,0 charge_prob:[2.11743463e-02, 3.23358673e-02, 4.80226445e-02, 6.93577003e-02, 9.74160134e-02, 1.33061703e-01, 1.76751397e-01, 2.28328271e-01, 2.86842551e-01, 3.50440685e-01, 4.16363375e-01, 4.81080301e-01, 5.40567191e-01, 5.90702553e-01, 6.27733156e-01, 6.48736514e-01, 6.52001617e-01, 6.37259118e-01, 6.05718026e-01, 5.59901968e-01, 5.03315778e-01, 4.40003520e-01, 3.74075109e-01, 3.09277644e-01, 2.48671091e-01, 1.94441573e-01, 1.47856359e-01, 1.09339717e-01, 7.86326544e-02, 5.49939587e-02, 3.74036587e-02, 2.47400312e-02, 1.59137839e-02, 9.95482716e-03, 6.05593279e-03, 3.58274109e-03, 2.06127938e-03, 1.15330811e-03, 6.27539245e-04, 3.32065295e-04, 1.70880751e-04, 8.55164871e-05, 4.16191893e-05, 1.96981045e-05, 9.06655522e-06, 4.05832890e-06, 1.76660407e-06, 7.47856488e-07, 3.07882044e-07, 1.23264356e-07], } -//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. +// E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023: https://nino.lbl.gov/pmts/ { name: "PMTCHARGE", index: "r11780_hqe", @@ -56,7 +56,7 @@ charge: [0., 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1., 1.1, 1.2, 1.3, 1.4 charge_prob: [0.603378, 0.849476, 1.16968, 1.57519, 2.0747, 2.67257, 3.3671, 4.14893, 5., 5.89327, 6.79355, 7.65931, 8.4457, 9.10825, 9.60699, 9.91044, 9.99889, 9.86651, 9.52201, 8.98767, 8.29695, 7.49105, 6.61486, 5.71283, 4.82542, 3.98632, 3.22079, 2.54511, 1.96699, 1.4868, 1.09914, 0.794714, 0.561979, 0.388671, 0.262904, 0.173927, 0.112535, 0.0712136, 0.0440748, 0.0266791, 0.0157945, 0.00914521, 0.00517886, 0.00286832, 0.00155373, 0.000823142, 0.000426509, 0.00021614, 0.000107126, 0.0000519286, 0.0000246191], } -//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. +// E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023: https://nino.lbl.gov/pmts/ { name: "PMTCHARGE", index: "r7081", @@ -120,7 +120,7 @@ charge_prob: [259.22322874793593, 269.3602291533824, 279.7736994345442, 290.4652 } -//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. +// E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023: https://nino.lbl.gov/pmts/ { name: "PMTCHARGE", index: "r7081_hqe", @@ -134,7 +134,7 @@ charge: [0.0, 0.0076012651770227535, 0.015202530354045507, 0.02280379553106826, charge_prob: [0.002291031848236706, 0.002309928362209871, 0.002328980735317256, 0.0023481902530906673, 0.002367558211665022, 0.002387085917865808, 0.002406774689297254, 0.0024266258544312384, 0.0024466407526969234, 0.002466820734571132, 0.002487167161669469, 0.0025076814068381937, 0.002528364854246851, 0.0025492188994816678, 0.002570244949639716, 0.002591444423423856, 0.002612818751238459, 0.002634369375285927, 0.0026560977496639963, 0.002678005340463856, 0.0027000936258690694, 0.002722364096255309, 0.0027448182542909225, 0.00276745761503832, 0.0027902837060562, 0.0028132980675026216, 0.002836502252238926, 0.002859897825934507, 0.0028834863671724597, 0.002907269467556089, 0.0029312487318163, 0.0029554257779198794, 0.002979802237178662, 0.0030043797543596, 0.003029159987795746, 0.003054144609498141, 0.0030793353052686366, 0.0031047337748136374, 0.00313034173185879, 0.003156160904264611, 0.003182193034143074, 0.0032084398779751544, 0.0032349032067293484, 0.0032615848059811634, 0.0032884864760335994, 0.003315610032038619, 0.003342957304119626, 0.003370530137494949, 0.0033983303926023436, 0.003426359945224524, 0.0034546206866157263, 0.0034831145236293238, 0.0035118433788464834, 0.003540809190705892, 0.0035700139136345503, 0.0035994595181796413, 0.0036291479911414962, 0.0036590813357076433, 0.0036892615715879793, 0.0037196907351510385, 0.0037503708795613966, 0.003781304074918208, 0.0038124924083948776, 0.003843937984379893, 0.0038756429246188154, 0.00390760936835744, 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0.0005347830224881206, 0.0005051763694536458, 0.00047720879968667193, 0.0004507895702736149, 0.0004258329620092836, 0.0004022580012743782, 0.0003799881973104044, 0.00035895129403957447, 0.00033907903562444973, 0.00032030694500666924, 0.0003025741147062165, 0.00028582300920245254, 0.00026999927825573105, 0.00025505158056390024, 0.0002409314171815303, 0.00022759297416138685, 0.00021499297390758295, 0.00020309053475811822, 0.00019184703834120812, 0.0001812260042750304, 0.00017119297180434413, 0.00016171538798993946, 0.0001527625020881437, 0.00014430526577768757, 0.00013631623891021162, 0.0001287695004786097, 0.00012164056451434694, 0.00011490630064086352, 0.00010854485902530709, 0.00010253559948507976, 9.685902451919448e-05, 9.14967160471426e-05, 8.643127565002944e-05, 8.164626812007483e-05, 7.712616813532938e-05, 7.285630988658132e-05, 6.882283949302178e-05, 6.501267005226963e-05, 6.141343917892027e-05, 5.801346889384171e-05, 5.480172773408113e-05, 5.176779496044164e-05, 4.890182674659896e-05, 4.619452424005629e-05, 4.363710339130756e-05, 4.122126645331905e-05, 3.893917505885606e-05, 3.678342478830249e-05, 3.474702114545655e-05, 3.2823356863354284e-05] } -//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. +// E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023: https://nino.lbl.gov/pmts/ { name: "PMTCHARGE", index: "r11780_hqe_rev", @@ -148,7 +148,7 @@ charge: [0.0, 0.0076012651770227535, 0.015202530354045507, 0.02280379553106826, charge_prob: [0.0029546296114625024, 0.00296862604979889, 0.0029826887909589353, 0.002996818149027145, 0.003011014439575883, 0.003025277979672414, 0.0030396090878859936, 0.003054008084294975, 0.0030684752904939624, 0.0030830110296009927, 0.003097615626264753, 0.0031122894066718284, 0.003127032698553991, 0.0031418458311955177, 0.003156729135440546, 0.0031716829437004584, 0.003186707589961314, 0.003201803409791304, 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0.0009757314895851712, 0.0009305603413138168, 0.0008874803755634039, 0.0008463947817700378, 0.0008072112311810438, 0.0007698416693710798, 0.0007342021183636474, 0.0007002124879133201, 0.0006677963955245897, 0.0006368809948028789, 0.0006073968117519871, 0.0005792775886500843, 0.0005524601351534156, 0.0005268841862931025, 0.0005024922670459374, 0.0004792295631748227, 0.00045704379804861, 0.0004358851151645166, 0.0004157059661091309, 0.00039646100370622036, 0.00037810698011122765, 0.00036060264962344186, 0.0003439086759974506, 0.0003279875440455746, 0.00031280347533263513, 0.00029832234777360495, 0.00028451161895345656, 0.0002713402529968922, 0.0002587786508236139, 0.0002467985836323986, 0.00023537312946451198, 0.00022447661270388704, 0.00021408454637813037, 0.0002041735771306749, 0.00019472143274043555, 0.00018570687207101558, 0.00017710963733700555, 0.00016891040858008874, 0.00016109076025266837, 0.0001536331198114314, 0.00014652072822781748, 0.00013973760232663369, 0.00013326849886819813, 0.00012709888029328092, 0.00012121488205387618, 0.00011560328145638165, 0.00011025146794717389, 0.00010514741477380172, 0.00010027965195811534, 9.56372405205941e-05, 9.120974789795095e-05, 8.698722449876979e-05, 8.296018134449172e-05, 7.911956874550337e-05] } -//E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023. +// E.Keener at Penn, updates to charge and probabilities based on darkbox data from Berkeley Jun to Dec 2023: https://nino.lbl.gov/pmts/. Paper on characterization: https://arxiv.org/abs/2311.05080 { name: "PMTCHARGE", index: "r14688", From 769a2571b66d4c842efee132e59f727e8d6da0cc Mon Sep 17 00:00:00 2001 From: Logan Lebanowski Date: Fri, 9 Aug 2024 19:45:38 -0400 Subject: [PATCH 040/103] Fix bug in beta decays file --- ratdb/beta_decays.dat | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/ratdb/beta_decays.dat b/ratdb/beta_decays.dat index 755984c8..c05a0477 100644 --- a/ratdb/beta_decays.dat +++ b/ratdb/beta_decays.dat @@ -494,7 +494,8 @@ DECAY: 56Co 0.99999 0 0.01 3 0.9973 2.2763 0.8468 0.0000 0. 0. 0. 0. 0. 1.00001 0 0.01 2 1.0890 2.9598 0.0000 0.0000 0. 0. 0. 0. 0. -DECAY: 56Co (EC) +# EC or Beta+ +DECAY: 56Co -26 56 6.673e+06 1.00001 0 0.948 2 1.2383 0.8468 0.0000 0.0000 0. 0. 0. 0. 0. From a9b814175d65c5923cb3056b117dbcc963c00ae1 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 15 Aug 2024 16:49:17 -0400 Subject: [PATCH 041/103] CMake changes for stlplus error suprression --- src/CMakeLists.txt | 18 +++++++----------- src/stlplus/CMakeLists.txt | 1 - 2 files changed, 7 insertions(+), 12 deletions(-) diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt index e009f844..8479f3a0 100644 --- a/src/CMakeLists.txt +++ b/src/CMakeLists.txt @@ -19,6 +19,8 @@ add_subdirectory(util) add_subdirectory(ds) add_subdirectory(ratbase) + + ########################################################### # Create our libraries and executables @@ -60,18 +62,12 @@ target_include_directories(RATEvent SYSTEM PUBLIC ${ROOT_INCLUDE_DIRS}/stlplus) target_include_directories(RATEvent PUBLIC ${RATPAC_INCLUDE_DIR}) target_link_libraries(RATEvent PUBLIC ${Geant4_LIBRARIES} ${ROOT_LIBRARIES} RATDict) + +file(GLOB stlplus_src "stlplus/src/*.cc" "stlplus/include/stlplus/*") set_source_files_properties( - stlplus/src/debug.cc - stlplus/src/dprintf.cc - stlplus/src/exceptions.cc - stlplus/src/file_system.cc - stlplus/src/fileio.cc - stlplus/src/multiio.cc - stlplus/src/string_utilities.cc - stlplus/src/stringio.cc - stlplus/src/textio.cc - PROPERTIES COMPILE_FLAGS -w -) + ${stlplus_src} + TARGET_DIRECTORY cmd core daq db ds fit gen geo io physics ratbase stlplus util RATDict RATEvent + PROPERTIES COMPILE_FLAGS -w) # This copies the root dict files to /lib add_custom_command(TARGET RATEvent POST_BUILD diff --git a/src/stlplus/CMakeLists.txt b/src/stlplus/CMakeLists.txt index 217d1b3e..bf19aa43 100644 --- a/src/stlplus/CMakeLists.txt +++ b/src/stlplus/CMakeLists.txt @@ -14,7 +14,6 @@ add_library(stlplus OBJECT src/stringio.cc src/textio.cc) -target_compile_options(stlplus PUBLIC -w) # Set our include directories target_include_directories(stlplus SYSTEM PUBLIC $) From 91fda5f1e66d1d0272c3bb95bd4c080af00f0b27 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 15 Aug 2024 16:50:31 -0400 Subject: [PATCH 042/103] Add ChannelStatus class --- src/ds/CMakeLists.txt | 6 +- src/ds/include/RAT/DS/ChannelStatus.hh | 86 ++++++++++++++++++++++++++ src/ds/include/RAT/DS/LinkDef.hh | 2 + src/ds/include/RAT/DS/Run.hh | 10 ++- 4 files changed, 99 insertions(+), 5 deletions(-) create mode 100644 src/ds/include/RAT/DS/ChannelStatus.hh diff --git a/src/ds/CMakeLists.txt b/src/ds/CMakeLists.txt index b4e2f254..b2062fc4 100644 --- a/src/ds/CMakeLists.txt +++ b/src/ds/CMakeLists.txt @@ -19,7 +19,6 @@ file(COPY include/ DESTINATION ${RATPAC_INCLUDE_DIR}) # hack hack hack hack hack include_directories(${RATPAC_INCLUDE_DIR}) - root_generate_dictionary(G__RATDict RAT/DS/Root.hh RAT/DS/Classifier.hh @@ -37,6 +36,7 @@ root_generate_dictionary(G__RATDict RAT/DS/RunStore.hh RAT/DS/Run.hh RAT/DS/PMTInfo.hh + RAT/DS/ChannelStatus.hh RAT/DS/MCTrack.hh RAT/DS/MCTrackStep.hh RAT/DS/Calib.hh @@ -54,8 +54,8 @@ root_generate_dictionary(G__RATDict RAT/ObjInt.hh RAT/ObjDbl.hh LINKDEF include/RAT/DS/LinkDef.hh - DEPENDENCIES core ds db io) - + DEPENDENCIES core ds db io + OPTIONS -Wno-exceptions) add_library(RATDict OBJECT G__RATDict.cxx) target_include_directories(RATDict SYSTEM PUBLIC $) diff --git a/src/ds/include/RAT/DS/ChannelStatus.hh b/src/ds/include/RAT/DS/ChannelStatus.hh new file mode 100644 index 00000000..4598e8d1 --- /dev/null +++ b/src/ds/include/RAT/DS/ChannelStatus.hh @@ -0,0 +1,86 @@ +/** + * @class DS::ChannelStatus + * Data Structure: Hardware channel status information + * + * @author James Shen + * Information about hardware channels, including which channels are online, + * cable delays, etc. + * + * Channel information is stored in terms of Logical Channel Numbers (LCNs). + * Mapping to PMTs are stored in PMTINFO under the `channel_number` field. + */ + +#ifndef __RAT_DS_ChannelStatus__ +#define __RAT_DS_ChannelStatus__ + +#include + +#include +#include +#include +#include +#include + +namespace RAT { +namespace DS { +class ChannelStatus : public TObject { + public: + ChannelStatus() : TObject() {} + virtual ~ChannelStatus() {} + + virtual void AddChannel(int lcn, int is_online, double offset) { + lcns.push_back(lcn); + online.push_back(is_online); + cable_offset.push_back(offset); + lcn_to_index[lcn] = lcns.size() - 1; + } + + virtual bool GetOnlineByChannel(int lcn) const { return online.at(lcn_to_index.at(lcn)); } + virtual bool GetOnlineByPMTID(int pmtid) const { return online.at(pmtid_to_index.at(pmtid)); } + + virtual double GetCableOffsetByChannel(int lcn) const { return cable_offset.at(lcn_to_index.at(lcn)); } + virtual double GetCableOffsetByPMTID(int pmtid) const { return cable_offset.at(pmtid_to_index.at(pmtid)); } + + virtual void LinkPMT(int pmtid, int lcn) { + if (lcn_to_index.find(lcn) == lcn_to_index.end()) { + warn << "PMT " << pmtid << " (LCN " << lcn << ") not found in channel_status, using defaults" << newline; + AddChannel(lcn, true, 0.0); + } + pmtid_to_index[pmtid] = lcn_to_index[lcn]; + } + virtual void Load(const PMTInfo* pmtinfo, const std::string index = "") { + try { + DBLinkPtr lChStatus = DB::Get()->GetLink("channel_status", index); + info << "Found Table" << newline; + std::vector lcns = lChStatus->GetIArray("channel_number"); + info << "Found lcns" << newline; + std::vector onlines = lChStatus->GetIArray("online"); + info << "Found online" << newline; + std::vector offsets = lChStatus->GetDArray("offset"); + info << "Found offsets" << newline; + for (size_t idx = 0; idx < lcns.size(); idx++) { + AddChannel(lcns[idx], onlines[idx], offsets[idx]); + } + } catch (DBNotFoundError& e) { + warn << "DB Not found!" << newline; + } + for (int pmtid = 0; pmtid < pmtinfo->GetPMTCount(); pmtid++) { + int lcn = pmtinfo->GetChannelNumber(pmtid); + LinkPMT(pmtid, lcn); + } + } + + ClassDef(ChannelStatus, 1); + + protected: + std::map lcn_to_index; + std::map pmtid_to_index; + std::vector lcns; + std::vector online; + std::vector cable_offset; +}; + +} // namespace DS +} // namespace RAT + +#endif diff --git a/src/ds/include/RAT/DS/LinkDef.hh b/src/ds/include/RAT/DS/LinkDef.hh index b48566dc..a858c18a 100644 --- a/src/ds/include/RAT/DS/LinkDef.hh +++ b/src/ds/include/RAT/DS/LinkDef.hh @@ -2,6 +2,7 @@ #pragma link C++ class RAT::DS::Root + ; #pragma link C++ class RAT::DS::PMTInfo + ; +#pragma link C++ class RAT::DS::ChannelStatus + ; #pragma link C++ class RAT::DS::MC + ; #pragma link C++ class RAT::DS::MCParticle + ; @@ -58,6 +59,7 @@ #pragma link C++ class vector < RAT::DS::Root>; #pragma link C++ class vector < RAT::DS::PMTInfo>; +#pragma link C++ class vector < RAT::DS::ChannelStatus>; #pragma link C++ class vector < RAT::DS::MC>; #pragma link C++ class vector < RAT::DS::MCParticle>; diff --git a/src/ds/include/RAT/DS/Run.hh b/src/ds/include/RAT/DS/Run.hh index ab0e725a..605656b1 100644 --- a/src/ds/include/RAT/DS/Run.hh +++ b/src/ds/include/RAT/DS/Run.hh @@ -11,6 +11,7 @@ #include #include +#include #include #include @@ -50,13 +51,18 @@ class Run : public TObject { virtual bool ExistPMTInfo() { return !pmtinfo.empty(); } virtual void PrunePMTInfo() { pmtinfo.resize(0); } - ClassDef(Run, 2); + /** Channel status */ + virtual ChannelStatus const &GetChannelStatus() const { return ch_status; } + virtual void SetChannelStatus(const ChannelStatus &_ch_status) { ch_status = _ch_status; } + + ClassDef(Run, 3); protected: Int_t id; ULong64_t type; TTimeStamp startTime; - std::vector pmtinfo; + std::vector pmtinfo; // ah.. why is this a vector? + ChannelStatus ch_status; }; } // namespace DS From 5d3b2872cd95ca779c71fbd4ff6ba91185f9464c Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 15 Aug 2024 17:00:55 -0400 Subject: [PATCH 043/103] Load Channel status using Gsim --- ratdb/RUN.ratdb | 2 ++ src/core/include/RAT/Gsim.hh | 1 + src/core/src/Gsim.cc | 6 +++++- 3 files changed, 8 insertions(+), 1 deletion(-) diff --git a/ratdb/RUN.ratdb b/ratdb/RUN.ratdb index abc111c1..9312d47d 100644 --- a/ratdb/RUN.ratdb +++ b/ratdb/RUN.ratdb @@ -2,6 +2,8 @@ { name: "RUN", run_range: [0, 0], +// index into channel_status table to use +channel_status: "", runtype: 0, } diff --git a/src/core/include/RAT/Gsim.hh b/src/core/include/RAT/Gsim.hh index ff04143d..29a88829 100644 --- a/src/core/include/RAT/Gsim.hh +++ b/src/core/include/RAT/Gsim.hh @@ -9,6 +9,7 @@ #include #include #include +#include #include #include #include diff --git a/src/core/src/Gsim.cc b/src/core/src/Gsim.cc index 8df286fc..d96eea42 100644 --- a/src/core/src/Gsim.cc +++ b/src/core/src/Gsim.cc @@ -420,7 +420,11 @@ void Gsim::MakeRun(int _runID) { run->SetID(_runID); run->SetType((unsigned)lrun->GetI("runtype")); run->SetStartTime(utc); - run->SetPMTInfo(&PMTFactoryBase::GetPMTInfo()); + const DS::PMTInfo *pmtinfo = &PMTFactoryBase::GetPMTInfo(); + run->SetPMTInfo(pmtinfo); + DS::ChannelStatus ch_status; + ch_status.Load(pmtinfo, lrun->GetS("channel_status")); + run->SetChannelStatus(ch_status); DS::RunStore::AddNewRun(run); } From 9701e6ead08dcca50846ea8d6787925c21b6ed09 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 15 Aug 2024 17:01:17 -0400 Subject: [PATCH 044/103] Improve logging --- src/ds/include/RAT/DS/ChannelStatus.hh | 7 ++----- 1 file changed, 2 insertions(+), 5 deletions(-) diff --git a/src/ds/include/RAT/DS/ChannelStatus.hh b/src/ds/include/RAT/DS/ChannelStatus.hh index 4598e8d1..5bf1f545 100644 --- a/src/ds/include/RAT/DS/ChannelStatus.hh +++ b/src/ds/include/RAT/DS/ChannelStatus.hh @@ -50,19 +50,16 @@ class ChannelStatus : public TObject { } virtual void Load(const PMTInfo* pmtinfo, const std::string index = "") { try { + info << "Using channel status table with index: " << index << newline; DBLinkPtr lChStatus = DB::Get()->GetLink("channel_status", index); - info << "Found Table" << newline; std::vector lcns = lChStatus->GetIArray("channel_number"); - info << "Found lcns" << newline; std::vector onlines = lChStatus->GetIArray("online"); - info << "Found online" << newline; std::vector offsets = lChStatus->GetDArray("offset"); - info << "Found offsets" << newline; for (size_t idx = 0; idx < lcns.size(); idx++) { AddChannel(lcns[idx], onlines[idx], offsets[idx]); } } catch (DBNotFoundError& e) { - warn << "DB Not found!" << newline; + warn << "Channel Status table Not found!" << newline; } for (int pmtid = 0; pmtid < pmtinfo->GetPMTCount(); pmtid++) { int lcn = pmtinfo->GetChannelNumber(pmtid); From 0860b1a33c3306b49f0ea4c0bd2d31ae9040c1c7 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 15 Aug 2024 17:47:53 -0400 Subject: [PATCH 045/103] Disable MCPhotons if channel is not set to offline --- src/core/include/RAT/GLG4HitPMTCollection.hh | 4 ++++ src/core/src/GLG4HitPMTCollection.cc | 9 ++++++++- src/core/src/Gsim.cc | 1 + 3 files changed, 13 insertions(+), 1 deletion(-) diff --git a/src/core/include/RAT/GLG4HitPMTCollection.hh b/src/core/include/RAT/GLG4HitPMTCollection.hh index 45f408bc..e9b6467c 100644 --- a/src/core/include/RAT/GLG4HitPMTCollection.hh +++ b/src/core/include/RAT/GLG4HitPMTCollection.hh @@ -13,6 +13,8 @@ #include #include "GLG4HitPMT.hh" +#include "RAT/DS/ChannelStatus.hh" +#include "RAT/Log.hh" /** GLG4HitPMTCollection stores GLG4HitPMT objects. @@ -42,12 +44,14 @@ class GLG4HitPMTCollection { int GetEntries() const; GLG4HitPMT *GetPMT(int i) const; GLG4HitPMT *GetPMT_ByID(int id) const; + void SetChannelStatus(const RAT::DS::ChannelStatus *_ch_status) { fChannelStatus = _ch_status; } void Print(std::ostream &) const; private: std::vector fPMT; std::map fHitmap; + const RAT::DS::ChannelStatus *fChannelStatus; }; #endif // __GLG4HitPMTCollection_hh__ diff --git a/src/core/src/GLG4HitPMTCollection.cc b/src/core/src/GLG4HitPMTCollection.cc index ba880829..ab17cd1c 100644 --- a/src/core/src/GLG4HitPMTCollection.cc +++ b/src/core/src/GLG4HitPMTCollection.cc @@ -29,7 +29,14 @@ void GLG4HitPMTCollection::Clear() { /** find or make appropriate HitPMT, and DetectPhoton in that HitPMT */ void GLG4HitPMTCollection::DetectPhoton(GLG4HitPhoton *new_photon) { - GLG4HitPMT *hitpmtptr = GetPMT_ByID(new_photon->GetPMTID()); + if (fChannelStatus == NULL) { + RAT::Log::Die("Found Null channel status!"); + } + int pmtid = new_photon->GetPMTID(); + if (!fChannelStatus->GetOnlineByPMTID(pmtid)) { + return; + } + GLG4HitPMT *hitpmtptr = GetPMT_ByID(pmtid); if (hitpmtptr != NULL) { // found a HitPMT with this ID diff --git a/src/core/src/Gsim.cc b/src/core/src/Gsim.cc index d96eea42..ad308d0a 100644 --- a/src/core/src/Gsim.cc +++ b/src/core/src/Gsim.cc @@ -179,6 +179,7 @@ void Gsim::BeginOfRunAction(const G4Run * /*aRun*/) { run = DS::RunStore::GetRun(runID); fPMTInfo = run->GetPMTInfo(); + GLG4VEventAction::GetTheHitPMTCollection()->SetChannelStatus(&run->GetChannelStatus()); for (size_t i = 0; i < fPMTTime.size(); i++) { delete fPMTTime[i]; From fa4a6b8ca2b6091b3f9c2eb29f1a7bea9d889940 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 15 Aug 2024 18:07:15 -0400 Subject: [PATCH 046/103] Write ChannelStatus info to ntuple --- src/io/include/RAT/OutNtupleProc.hh | 2 ++ src/io/src/OutNtupleProc.cc | 5 +++++ 2 files changed, 7 insertions(+) diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index 526663f5..f8bfc34a 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -70,6 +70,8 @@ class OutNtupleProc : public Processor { std::vector pmtType; std::vector pmtId; std::vector pmtChannel; + std::vector pmtIsOnline; + std::vector pmtCableOffset; std::vector pmtX; std::vector pmtY; std::vector pmtZ; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 1b6b46b2..f86f08b7 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -72,6 +72,8 @@ bool OutNtupleProc::OpenFile(std::string filename) { metaTree->Branch("pmtType", &pmtType); metaTree->Branch("pmtId", &pmtId); metaTree->Branch("pmtChannel", &pmtChannel); + metaTree->Branch("pmtIsOnline", &pmtIsOnline); + metaTree->Branch("pmtCableOffset", &pmtCableOffset); metaTree->Branch("pmtX", &pmtX); metaTree->Branch("pmtY", &pmtY); metaTree->Branch("pmtZ", &pmtZ); @@ -508,6 +510,7 @@ OutNtupleProc::~OutNtupleProc() { outputFile->cd(); DS::PMTInfo *pmtinfo = runBranch->GetPMTInfo(); + const DS::ChannelStatus &ch_status = runBranch->GetChannelStatus(); for (int id = 0; id < pmtinfo->GetPMTCount(); id++) { int type = pmtinfo->GetType(id); int channel = pmtinfo->GetChannelNumber(id); @@ -516,6 +519,8 @@ OutNtupleProc::~OutNtupleProc() { pmtType.push_back(type); pmtId.push_back(id); pmtChannel.push_back(channel); + pmtIsOnline.push_back(ch_status.GetOnlineByPMTID(id)); + pmtCableOffset.push_back(ch_status.GetCableOffsetByPMTID(id)); pmtX.push_back(position.X()); pmtY.push_back(position.Y()); pmtZ.push_back(position.Z()); From 096b552c5d40a36cab4e7254a0f417f46535c952 Mon Sep 17 00:00:00 2001 From: Ravi Pitelka Date: Tue, 20 Aug 2024 16:21:30 -0400 Subject: [PATCH 047/103] Add termination ohms and helper functions to Digit class. --- src/daq/src/Digitizer.cc | 1 + src/ds/include/RAT/DS/Digit.hh | 16 ++++++++++++++-- 2 files changed, 15 insertions(+), 2 deletions(-) diff --git a/src/daq/src/Digitizer.cc b/src/daq/src/Digitizer.cc index 93883879..c718c2a7 100644 --- a/src/daq/src/Digitizer.cc +++ b/src/daq/src/Digitizer.cc @@ -50,6 +50,7 @@ void Digitizer::DigitizeSum(DS::EV* ev) { digit.SetNBits(UShort_t(fNBits)); digit.SetDynamicRange((fVhigh - fVlow)); digit.SetSamplingRate(fSamplingRate); + digit.SetTerminationOhms(fTerminationOhms); ev->SetDigitizer(digit); } diff --git a/src/ds/include/RAT/DS/Digit.hh b/src/ds/include/RAT/DS/Digit.hh index 1d95d91e..9f97f62e 100644 --- a/src/ds/include/RAT/DS/Digit.hh +++ b/src/ds/include/RAT/DS/Digit.hh @@ -9,6 +9,7 @@ #define __RAT_DS_Digit__ #include +#include #include #include @@ -39,10 +40,20 @@ class Digit : public TObject { virtual void SetNBits(UShort_t _nbits) { nbits = _nbits; }; virtual UShort_t GetNBits() const { return nbits; }; - // Dynamic range (V) + // Dynamic range (mV) virtual void SetDynamicRange(double _dynamic_range) { dynamic_range = _dynamic_range; }; virtual Double_t GetDynamicRange() const { return dynamic_range; }; + // Termination ohms + virtual void SetTerminationOhms(double _termination_ohms) { termination_ohms = _termination_ohms; }; + virtual Double_t GetTerminationOhms() const { return termination_ohms; }; + + // Calculate time step (ns) + virtual Double_t GetTimeStepNS() const { return 1.0 / sampling_rate; }; + + // Calculate voltage resolution (mV) + virtual Double_t GetVoltageResolution() const { return dynamic_range / pow(2, nbits); }; + /// Set a waveform, overwrites existing virtual void SetWaveform(const int waveformID, const std::vector &samples) { waveforms[waveformID] = samples; @@ -69,7 +80,7 @@ class Digit : public TObject { /// Delete all waveforms virtual void PruneWaveforms() { waveforms.clear(); } - ClassDef(Digit, 3); + ClassDef(Digit, 4); protected: std::string name; @@ -77,6 +88,7 @@ class Digit : public TObject { uint32_t nsamples; UShort_t nbits; Double_t dynamic_range; + Double_t termination_ohms; std::map> waveforms; ///< Map of input number to samples }; From 265055957ecf5369572aec4c4415e7b58a60a596 Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 20 Aug 2024 16:36:59 -0400 Subject: [PATCH 048/103] fix formatting --- src/ds/include/RAT/DS/Digit.hh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ds/include/RAT/DS/Digit.hh b/src/ds/include/RAT/DS/Digit.hh index 9f97f62e..ab44a98c 100644 --- a/src/ds/include/RAT/DS/Digit.hh +++ b/src/ds/include/RAT/DS/Digit.hh @@ -8,8 +8,8 @@ #ifndef __RAT_DS_Digit__ #define __RAT_DS_Digit__ -#include #include +#include #include #include From dd3c491e5c421b8c260ab0451a80f7f6a5d27e40 Mon Sep 17 00:00:00 2001 From: James Shen Date: Fri, 2 Aug 2024 15:07:25 -0400 Subject: [PATCH 049/103] Build waveformanalysis as a processor --- ratdb/DIGITIZER_ANALYSIS.ratdb | 1 + src/cmd/src/ProcBlockManager.cc | 2 + src/daq/include/RAT/WaveformAnalysis.hh | 18 ++++- src/daq/src/WaveformAnalysis.cc | 88 ++++++++++++++++++++++++- 4 files changed, 105 insertions(+), 4 deletions(-) diff --git a/ratdb/DIGITIZER_ANALYSIS.ratdb b/ratdb/DIGITIZER_ANALYSIS.ratdb index 3a910236..e9795456 100644 --- a/ratdb/DIGITIZER_ANALYSIS.ratdb +++ b/ratdb/DIGITIZER_ANALYSIS.ratdb @@ -26,4 +26,5 @@ fit_window_high: 15.0, // Fit shape lognormal_shape: 0.15, lognormal_scale: 10.5, +apply_cable_offset: 0, } diff --git a/src/cmd/src/ProcBlockManager.cc b/src/cmd/src/ProcBlockManager.cc index 2f3a137b..e57ca61d 100644 --- a/src/cmd/src/ProcBlockManager.cc +++ b/src/cmd/src/ProcBlockManager.cc @@ -26,6 +26,7 @@ #include #include #include +#include namespace RAT { @@ -88,6 +89,7 @@ ProcBlockManager::ProcBlockManager(ProcBlock *theMainBlock) { AppendProcessor(); AppendProcessor(); AppendProcessor(); + AppendProcessor(); // Misc AppendProcessor(); AppendProcessor(); diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index 59d47c18..adf7a477 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -21,17 +21,21 @@ #include #include #include +#include #include namespace RAT { -class WaveformAnalysis { +class WaveformAnalysis : public Processor { public: WaveformAnalysis(); WaveformAnalysis(std::string analyzer_name); virtual ~WaveformAnalysis(){}; - void RunAnalysis(DS::DigitPMT *pmt, int pmtID, Digitizer *fDigitizer, double timeOffset = 0.0); + void Configure(const std::string &analyzer_name); + void RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, Digitizer *fDigitizer, double timeOffset = 0.0); + void RunAnalysis(DS::DigitPMT *digitpmt, int pmtID, DS::Digit *dsdigit, double timeOffset = 0.0); + double RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer); // Calculate baseline (in mV) @@ -73,6 +77,11 @@ class WaveformAnalysis { // Fit the digitized waveform using a lognormal function void FitWaveform(); + virtual Processor::Result Event(DS::Root *ds, DS::EV *ev); + virtual void SetS(std::string param, std::string value); + virtual void SetD(std::string param, double value); + virtual void SetI(std::string param, int value); + protected: // Digitizer settings DBLinkPtr fDigit; @@ -121,8 +130,13 @@ class WaveformAnalysis { double fFittedBaseline; double fChi2NDF; + // USe Cable offsets specified in channel status? + int fApplyCableOffset; + // Invalid value for bad waveforms const UShort_t INVALID = 9999; + + void DoAnalysis(DS::DigitPMT *pmt, double timeOffset); }; } // namespace RAT diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index d27be6cf..4babd9db 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -5,11 +5,18 @@ #include #include +#include "RAT/DS/DigitPMT.hh" +#include "RAT/DS/RunStore.hh" + namespace RAT { WaveformAnalysis::WaveformAnalysis() : WaveformAnalysis::WaveformAnalysis("") {} -WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { +WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) : Processor("WaveformAnalysis") { + Configure(analyzer_name); +} + +void WaveformAnalysis::Configure(const std::string& analyzer_name) { try { fDigit = DB::Get()->GetLink("DIGITIZER_ANALYSIS", analyzer_name); fPedWindowLow = fDigit->GetI("pedestal_window_low"); @@ -33,12 +40,74 @@ WaveformAnalysis::WaveformAnalysis(std::string analyzer_name) { } } +void WaveformAnalysis::SetS(std::string param, std::string value) { + if (param == "analyzer_name") { + Configure(value); + } else { + throw Processor::ParamUnknown(param); + } +} + +void WaveformAnalysis::SetI(std::string param, int value) { + if (param == "run_fitting") { + fRunFit = value; + } else if (param == "pedestal_window_low") { + fPedWindowLow = value; + } else if (param == "pedestal_window_high") { + fPedWindowHigh = value; + } else if (param == "apply_cable_offset") { + fApplyCableOffset = value; + } else { + throw Processor::ParamUnknown(param); + } +} + +void WaveformAnalysis::SetD(std::string param, double value) { + if (param == "lookback") { + fLookback = value; + } else if (param == "integration_window_low") { + fIntWindowLow = value; + } else if (param == "integration_window_high") { + fIntWindowHigh = value; + } else if (param == "constant_fraction") { + fConstFrac = value; + } else if (param == "voltage_threshold") { + fThreshold = value; + } else if (param == "sliding_window_width") { + fSlidingWindow = value; + } else if (param == "sliding_window_thresh") { + fChargeThresh = value; + } else if (param == "fit_window_low") { + fFitWindowLow = value; + } else if (param == "fit_window_high") { + fFitWindowHigh = value; + } else if (param == "lognormal_shape") { + fFitShape = value; + } else if (param == "lognormal_scale") { + fFitScale = value; + } else { + throw Processor::ParamUnknown(param); + } +} + void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* fDigitizer, double timeOffset) { fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns fDigitWfm = fDigitizer->fDigitWaveForm[pmtID]; + fTermOhms = fDigitizer->fTerminationOhms; + DoAnalysis(digitpmt, timeOffset); +} + +void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, DS::Digit* dsdigit, double timeOffset) { + fVoltageRes = dsdigit->GetVoltageResolution(); + fTimeStep = dsdigit->GetTimeStepNS(); + fDigitWfm = dsdigit->GetWaveform(pmtID); + fTermOhms = dsdigit->GetTerminationOhms(); + DoAnalysis(digitpmt, timeOffset); +} +void WaveformAnalysis::DoAnalysis(DS::DigitPMT* digitpmt, double timeOffset) { // Calculate baseline in mV CalculatePedestal(); @@ -51,7 +120,6 @@ void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* // Get the total number of threshold crossings GetNCrossings(); - fTermOhms = fDigitizer->fTerminationOhms; // Integrate the waveform to calculate the charge Integrate(); SlidingIntegral(); @@ -362,4 +430,20 @@ void WaveformAnalysis::FitWaveform() { delete ln_fit; } +Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { + DS::Digit* dsdigit = &ev->GetDigitizer(); + DS::Run* run = DS::RunStore::GetRun(ds->GetRunID()); + const DS::ChannelStatus& ch_status = run->GetChannelStatus(); + std::vector pmt_ids = dsdigit->GetIDs(); + for (int pmt_id : pmt_ids) { + // Do not analyze negative pmtid channels, since they do not correspond to real PMTs. + if (pmt_id < 0) continue; + DS::DigitPMT* digitpmt = ev->AddNewDigitPMT(); + digitpmt->SetID(pmt_id); + double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; + RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); + } + return Processor::Result::OK; +} + } // namespace RAT From 6e5c5002eaafec3fec1ee742cfe0a1c2145fe60a Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 22 Aug 2024 17:06:24 -0400 Subject: [PATCH 050/103] add toggle for cable delay application, default=Off for simulation --- src/daq/src/WaveformAnalysis.cc | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 4babd9db..73f0b895 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -29,6 +29,7 @@ void WaveformAnalysis::Configure(const std::string& analyzer_name) { fSlidingWindow = fDigit->GetD("sliding_window_width"); fChargeThresh = fDigit->GetD("sliding_window_thresh"); fRunFit = fDigit->GetI("run_fitting"); + fApplyCableOffset = fDigit->GetI("apply_cable_offset"); if (fRunFit) { fFitWindowLow = fDigit->GetD("fit_window_low"); fFitWindowHigh = fDigit->GetD("fit_window_high"); @@ -438,8 +439,7 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { for (int pmt_id : pmt_ids) { // Do not analyze negative pmtid channels, since they do not correspond to real PMTs. if (pmt_id < 0) continue; - DS::DigitPMT* digitpmt = ev->AddNewDigitPMT(); - digitpmt->SetID(pmt_id); + DS::DigitPMT* digitpmt = ev->GetDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); } From 0ab45e5a1d0b510bb1258c5e2b7d377702b6ad07 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 22 Aug 2024 17:10:35 -0400 Subject: [PATCH 051/103] Make EV::pmt and EV::digitpmt maps, make the GetPMT functions get or create --- src/daq/src/LessSimpleDAQ2Proc.cc | 3 +-- src/daq/src/LessSimpleDAQProc.cc | 3 +-- src/daq/src/SimpleDAQProc.cc | 3 +-- src/daq/src/SplitEVDAQProc.cc | 6 ++---- src/ds/include/RAT/DS/EV.hh | 28 +++++++++++++--------------- 5 files changed, 18 insertions(+), 25 deletions(-) diff --git a/src/daq/src/LessSimpleDAQ2Proc.cc b/src/daq/src/LessSimpleDAQ2Proc.cc index c4f33570..8209cb5f 100644 --- a/src/daq/src/LessSimpleDAQ2Proc.cc +++ b/src/daq/src/LessSimpleDAQ2Proc.cc @@ -120,8 +120,7 @@ Processor::Result LessSimpleDAQ2Proc::DSEvent(DS::Root *ds) { for (unsigned long bb = startIndex[b]; bb < tArraySort.size(); bb++) { if (subIndex[bb] == b) { - pmt = ev->AddNewPMT(); - pmt->SetID(idArraySort[bb]); + pmt = ev->GetPMT(idArraySort[bb]); pmt->SetTime(tArraySort[bb]); pmt->SetCharge(qArraySort[bb]); diff --git a/src/daq/src/LessSimpleDAQProc.cc b/src/daq/src/LessSimpleDAQProc.cc index a45d84e8..7bc49ed7 100644 --- a/src/daq/src/LessSimpleDAQProc.cc +++ b/src/daq/src/LessSimpleDAQProc.cc @@ -190,8 +190,7 @@ Processor::Result LessSimpleDAQProc::DSEvent(DS::Root *ds) { // we can then set these events on the PMT for one subevent for (unsigned long dd = 0; dd < idGroup.size(); dd++) { - pmt = ev->AddNewPMT(); - pmt->SetID(idGroup[dd]); + pmt = ev->GetPMT(idGroup[dd]); pmt->SetTime(tGroup[dd]); pmt->SetCharge(qGroup[dd]); } diff --git a/src/daq/src/SimpleDAQProc.cc b/src/daq/src/SimpleDAQProc.cc index 469cb0bc..c5a6e3df 100644 --- a/src/daq/src/SimpleDAQProc.cc +++ b/src/daq/src/SimpleDAQProc.cc @@ -37,8 +37,7 @@ Processor::Result SimpleDAQProc::DSEvent(DS::Root *ds) { if (mcpmt->GetMCPhotonCount() > 0) { // Need at least one photon to trigger - DS::PMT *pmt = ev->AddNewPMT(); - pmt->SetID(pmtID); + DS::PMT *pmt = ev->GetPMT(pmtID); // Create one sample, hit time is determined by first hit, // "infinite" charge integration time diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index 7bee9d54..fc1c1ecd 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -165,8 +165,7 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { } std::sort(hitTimes.begin(), hitTimes.end()); if (pmtInEvent) { - DS::PMT *pmt = ev->AddNewPMT(); - pmt->SetID(pmtID); + DS::PMT *pmt = ev->GetPMT(pmtID); double front_end_hit_time = *std::min_element(hitTimes.begin(), hitTimes.end()); // PMT Hit time relative to the trigger pmt->SetTime(front_end_hit_time - tt); @@ -175,8 +174,7 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { if (fDigitize) { fDigitizer->DigitizePMT(mcpmt, pmtID, tt, pmtinfo); if (fAnalyze) { - DS::DigitPMT *digitpmt = ev->AddNewDigitPMT(); - digitpmt->SetID(pmtID); + DS::DigitPMT *digitpmt = ev->GetDigitPMT(pmtID); double timing_offset = fDigitizer->fPMTWaveformGenerators[pmtinfo->GetModelNameByID(pmtID)]->fPMTPulseTimeOffset; fWaveformAnalysis->RunAnalysis(digitpmt, pmtID, fDigitizer, timing_offset); diff --git a/src/ds/include/RAT/DS/EV.hh b/src/ds/include/RAT/DS/EV.hh index bd20bf9c..b42240ae 100644 --- a/src/ds/include/RAT/DS/EV.hh +++ b/src/ds/include/RAT/DS/EV.hh @@ -43,22 +43,20 @@ class EV : public TObject { virtual void SetUTC(const TTimeStamp &_utc) { utc = _utc; } /** List of pmts with at least one charge sample in this event. */ - virtual PMT *GetPMT(Int_t i) { return &pmt[i]; } - virtual Int_t GetPMTCount() const { return pmt.size(); } - virtual PMT *AddNewPMT() { - pmt.resize(pmt.size() + 1); - return &pmt.back(); + virtual PMT *GetPMT(Int_t id) { + pmt[id].SetID(id); + return &pmt[id]; } - virtual void PrunePMT() { pmt.resize(0); } + virtual Int_t GetPMTCount() const { return pmt.size(); } + virtual void PrunePMT() { pmt.clear(); } /** List of pmts with at least one charge sample in this event. */ - virtual DigitPMT *GetDigitPMT(Int_t i) { return &digitpmt[i]; } - virtual Int_t GetDigitPMTCount() const { return digitpmt.size(); } - virtual DigitPMT *AddNewDigitPMT() { - digitpmt.resize(digitpmt.size() + 1); - return &digitpmt.back(); + virtual DigitPMT *GetDigitPMT(Int_t id) { + digitpmt[id].SetID(id); + return &digitpmt[id]; } - virtual void PruneDigitPMT() { digitpmt.resize(0); } + virtual Int_t GetDigitPMTCount() const { return digitpmt.size(); } + virtual void PruneDigitPMT() { digitpmt.clear(); } /** Number of PMTs which were hit at least once. (Convenience method) */ virtual Int_t Nhits() const { return GetPMTCount(); } @@ -105,7 +103,7 @@ class EV : public TObject { // Prune digitizer information virtual void PruneDigitizer() { digitizer.resize(0); } - ClassDef(EV, 2); + ClassDef(EV, 3); protected: Int_t id; @@ -113,8 +111,8 @@ class EV : public TObject { Double_t calibratedTriggerTime; Double_t deltat; TTimeStamp utc; - std::vector pmt; - std::vector digitpmt; + std::map pmt; + std::map digitpmt; std::vector lappd; std::vector fitResults; std::vector classifierResults; From f1e2f6ecd3fd9b0f410423c1f7334c673c5f0c1e Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 22 Aug 2024 18:36:39 -0400 Subject: [PATCH 052/103] Do not perform analysis on broken channels --- src/daq/src/WaveformAnalysis.cc | 1 + 1 file changed, 1 insertion(+) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 73f0b895..bd0ff5a6 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -439,6 +439,7 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { for (int pmt_id : pmt_ids) { // Do not analyze negative pmtid channels, since they do not correspond to real PMTs. if (pmt_id < 0) continue; + if (!ch_status.GetOnlineByPMTID(pmt_id)) continue; DS::DigitPMT* digitpmt = ev->GetDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); From 4d7f509ca817c02743825607720c270a7b98bdee Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 22 Aug 2024 18:55:44 -0400 Subject: [PATCH 053/103] Add zero-suppression --- ratdb/DIGITIZER_ANALYSIS.ratdb | 3 +++ src/daq/include/RAT/WaveformAnalysis.hh | 1 + src/daq/src/WaveformAnalysis.cc | 11 +++++++++++ src/ds/include/RAT/DS/EV.hh | 4 ++++ 4 files changed, 19 insertions(+) diff --git a/ratdb/DIGITIZER_ANALYSIS.ratdb b/ratdb/DIGITIZER_ANALYSIS.ratdb index e9795456..305f3446 100644 --- a/ratdb/DIGITIZER_ANALYSIS.ratdb +++ b/ratdb/DIGITIZER_ANALYSIS.ratdb @@ -26,5 +26,8 @@ fit_window_high: 15.0, // Fit shape lognormal_shape: 0.15, lognormal_scale: 10.5, + +// Run configuration apply_cable_offset: 0, +zero_suppress: 1 // If true, do not keep digitPMTs if the waveform never passes threshold } diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index adf7a477..7183e5ac 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -132,6 +132,7 @@ class WaveformAnalysis : public Processor { // USe Cable offsets specified in channel status? int fApplyCableOffset; + int fZeroSuppress; // Invalid value for bad waveforms const UShort_t INVALID = 9999; diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index bd0ff5a6..45e1590a 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -30,6 +30,7 @@ void WaveformAnalysis::Configure(const std::string& analyzer_name) { fChargeThresh = fDigit->GetD("sliding_window_thresh"); fRunFit = fDigit->GetI("run_fitting"); fApplyCableOffset = fDigit->GetI("apply_cable_offset"); + fZeroSuppress = fDigit->GetI("zero_suppress"); if (fRunFit) { fFitWindowLow = fDigit->GetD("fit_window_low"); fFitWindowHigh = fDigit->GetD("fit_window_high"); @@ -58,6 +59,8 @@ void WaveformAnalysis::SetI(std::string param, int value) { fPedWindowHigh = value; } else if (param == "apply_cable_offset") { fApplyCableOffset = value; + } else if (param == "zero_suppress") { + fZeroSuppress = value; } else { throw Processor::ParamUnknown(param); } @@ -443,6 +446,14 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { DS::DigitPMT* digitpmt = ev->GetDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); + if (fZeroSuppress) { + if (digitpmt->GetNCrossings() <= 0) { + size_t nerased = ev->EraseDigitPMT(pmt_id); + if (nerased != 1) + warn << "WaveformAnalysis: Removed " << nerased + << " digitPMTs with a single call to EraseDigitPMT. Impossible!" << newline; + } + } } return Processor::Result::OK; } diff --git a/src/ds/include/RAT/DS/EV.hh b/src/ds/include/RAT/DS/EV.hh index b42240ae..2477bb27 100644 --- a/src/ds/include/RAT/DS/EV.hh +++ b/src/ds/include/RAT/DS/EV.hh @@ -55,6 +55,10 @@ class EV : public TObject { digitpmt[id].SetID(id); return &digitpmt[id]; } + virtual size_t EraseDigitPMT(Int_t id) { + size_t n_erased = digitpmt.erase(id); + return n_erased; + } virtual Int_t GetDigitPMTCount() const { return digitpmt.size(); } virtual void PruneDigitPMT() { digitpmt.clear(); } From 767a01a2722238970a2b4b074dfb3bde6d424345 Mon Sep 17 00:00:00 2001 From: Logan Lebanowski Date: Sat, 24 Aug 2024 01:33:57 -0400 Subject: [PATCH 054/103] Fix untriggered EV info in ntuple --- src/io/src/OutNtupleProc.cc | 3 +++ 1 file changed, 3 insertions(+) diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 1b6b46b2..447a01af 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -467,7 +467,10 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { outputTree->Fill(); } if (options.untriggered && ds->GetEVCount() == 0) { + // EV information evid = -1; + subev = -1; + nhits = -1; triggerTime = 0; timeSinceLastTrigger_us = 0; if (options.pmthits) { From 8ba3a25cbc647177dcff30423ece2234ea1f4c1f Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 3 Sep 2024 20:27:46 -0400 Subject: [PATCH 055/103] update pmt&digitpmt getter methods and how they are called in outntupleproc --- src/daq/src/LessSimpleDAQ2Proc.cc | 2 +- src/daq/src/LessSimpleDAQProc.cc | 2 +- src/daq/src/SimpleDAQProc.cc | 2 +- src/daq/src/SplitEVDAQProc.cc | 4 ++-- src/daq/src/WaveformAnalysis.cc | 2 +- src/ds/include/RAT/DS/EV.hh | 18 ++++++++++++++++-- src/fit/src/ClassifyChargeBalance.cc | 2 +- src/fit/src/FitCentroidProc.cc | 2 +- src/fit/src/FitPathProc.cc | 2 +- src/io/src/OutNtupleProc.cc | 8 ++++---- 10 files changed, 29 insertions(+), 15 deletions(-) diff --git a/src/daq/src/LessSimpleDAQ2Proc.cc b/src/daq/src/LessSimpleDAQ2Proc.cc index 8209cb5f..aa57bbb3 100644 --- a/src/daq/src/LessSimpleDAQ2Proc.cc +++ b/src/daq/src/LessSimpleDAQ2Proc.cc @@ -120,7 +120,7 @@ Processor::Result LessSimpleDAQ2Proc::DSEvent(DS::Root *ds) { for (unsigned long bb = startIndex[b]; bb < tArraySort.size(); bb++) { if (subIndex[bb] == b) { - pmt = ev->GetPMT(idArraySort[bb]); + pmt = ev->GetOrCreatePMT(idArraySort[bb]); pmt->SetTime(tArraySort[bb]); pmt->SetCharge(qArraySort[bb]); diff --git a/src/daq/src/LessSimpleDAQProc.cc b/src/daq/src/LessSimpleDAQProc.cc index 7bc49ed7..da924132 100644 --- a/src/daq/src/LessSimpleDAQProc.cc +++ b/src/daq/src/LessSimpleDAQProc.cc @@ -190,7 +190,7 @@ Processor::Result LessSimpleDAQProc::DSEvent(DS::Root *ds) { // we can then set these events on the PMT for one subevent for (unsigned long dd = 0; dd < idGroup.size(); dd++) { - pmt = ev->GetPMT(idGroup[dd]); + pmt = ev->GetOrCreatePMT(idGroup[dd]); pmt->SetTime(tGroup[dd]); pmt->SetCharge(qGroup[dd]); } diff --git a/src/daq/src/SimpleDAQProc.cc b/src/daq/src/SimpleDAQProc.cc index c5a6e3df..bd8358e5 100644 --- a/src/daq/src/SimpleDAQProc.cc +++ b/src/daq/src/SimpleDAQProc.cc @@ -37,7 +37,7 @@ Processor::Result SimpleDAQProc::DSEvent(DS::Root *ds) { if (mcpmt->GetMCPhotonCount() > 0) { // Need at least one photon to trigger - DS::PMT *pmt = ev->GetPMT(pmtID); + DS::PMT *pmt = ev->GetOrCreatePMT(pmtID); // Create one sample, hit time is determined by first hit, // "infinite" charge integration time diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index fc1c1ecd..cfcb9c25 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -165,7 +165,7 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { } std::sort(hitTimes.begin(), hitTimes.end()); if (pmtInEvent) { - DS::PMT *pmt = ev->GetPMT(pmtID); + DS::PMT *pmt = ev->GetOrCreatePMT(pmtID); double front_end_hit_time = *std::min_element(hitTimes.begin(), hitTimes.end()); // PMT Hit time relative to the trigger pmt->SetTime(front_end_hit_time - tt); @@ -174,7 +174,7 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { if (fDigitize) { fDigitizer->DigitizePMT(mcpmt, pmtID, tt, pmtinfo); if (fAnalyze) { - DS::DigitPMT *digitpmt = ev->GetDigitPMT(pmtID); + DS::DigitPMT *digitpmt = ev->GetOrCreateDigitPMT(pmtID); double timing_offset = fDigitizer->fPMTWaveformGenerators[pmtinfo->GetModelNameByID(pmtID)]->fPMTPulseTimeOffset; fWaveformAnalysis->RunAnalysis(digitpmt, pmtID, fDigitizer, timing_offset); diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 45e1590a..1ffe832e 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -443,7 +443,7 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { // Do not analyze negative pmtid channels, since they do not correspond to real PMTs. if (pmt_id < 0) continue; if (!ch_status.GetOnlineByPMTID(pmt_id)) continue; - DS::DigitPMT* digitpmt = ev->GetDigitPMT(pmt_id); + DS::DigitPMT* digitpmt = ev->GetOrCreateDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); if (fZeroSuppress) { diff --git a/src/ds/include/RAT/DS/EV.hh b/src/ds/include/RAT/DS/EV.hh index 2477bb27..b0cc67c4 100644 --- a/src/ds/include/RAT/DS/EV.hh +++ b/src/ds/include/RAT/DS/EV.hh @@ -43,18 +43,32 @@ class EV : public TObject { virtual void SetUTC(const TTimeStamp &_utc) { utc = _utc; } /** List of pmts with at least one charge sample in this event. */ - virtual PMT *GetPMT(Int_t id) { + virtual PMT *GetOrCreatePMT(Int_t id) { pmt[id].SetID(id); return &pmt[id]; } + const std::vector GetAllPMTIDs() { + std::vector result; + for (auto const &kv : pmt) { + result.push_back(kv.first); + } + return result; + } virtual Int_t GetPMTCount() const { return pmt.size(); } virtual void PrunePMT() { pmt.clear(); } /** List of pmts with at least one charge sample in this event. */ - virtual DigitPMT *GetDigitPMT(Int_t id) { + virtual DigitPMT *GetOrCreateDigitPMT(Int_t id) { digitpmt[id].SetID(id); return &digitpmt[id]; } + const std::vector GetAllDigitPMTIDs() { + std::vector result; + for (auto const &kv : digitpmt) { + result.push_back(kv.first); + } + return result; + } virtual size_t EraseDigitPMT(Int_t id) { size_t n_erased = digitpmt.erase(id); return n_erased; diff --git a/src/fit/src/ClassifyChargeBalance.cc b/src/fit/src/ClassifyChargeBalance.cc index e7abe0b4..078cdbb2 100644 --- a/src/fit/src/ClassifyChargeBalance.cc +++ b/src/fit/src/ClassifyChargeBalance.cc @@ -14,7 +14,7 @@ Processor::Result ClassifyChargeBalance::Event(DS::Root *ds, DS::EV *ev) { double qsumsquare = 0; double qsum = 0; for (int pmtc = 0; pmtc < hitcount; pmtc++) { - DS::PMT *pmt = ev->GetPMT(pmtc); + DS::PMT *pmt = ev->GetOrCreatePMT(pmtc); double charge = pmt->GetCharge(); qsumsquare += pow(charge, 2); qsum += charge; diff --git a/src/fit/src/FitCentroidProc.cc b/src/fit/src/FitCentroidProc.cc index 5e68016e..cf0a8d81 100644 --- a/src/fit/src/FitCentroidProc.cc +++ b/src/fit/src/FitCentroidProc.cc @@ -33,7 +33,7 @@ Processor::Result FitCentroidProc::Event(DS::Root *ds, DS::EV *ev) { TVector3 centroid(0.0, 0.0, 0.0); for (int i = 0; i < ev->GetPMTCount(); i++) { - DS::PMT *pmt = ev->GetPMT(i); + DS::PMT *pmt = ev->GetOrCreatePMT(i); double Qpow = 0.0; Qpow = pow(pmt->GetCharge(), fPower); diff --git a/src/fit/src/FitPathProc.cc b/src/fit/src/FitPathProc.cc index 6bb91c43..87d8bd8d 100644 --- a/src/fit/src/FitPathProc.cc +++ b/src/fit/src/FitPathProc.cc @@ -203,7 +203,7 @@ Processor::Result FitPathProc::Event(DS::Root *ds, DS::EV *ev) { DS::PMTInfo *pmtinfo = run->GetPMTInfo(); for (int i = 0; i < ev->GetPMTCount(); i++) { - DS::PMT *pmt = ev->GetPMT(i); + DS::PMT *pmt = ev->GetOrCreatePMT(i); TVector3 pmtpos = pmtinfo->GetPosition(pmt->GetID()); TVector3 pmtdir = pmtinfo->GetDirection(pmt->GetID()); fHits[i].x = pmtpos.X(); diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index b1af9cad..b90a9e33 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -425,8 +425,8 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { hitPMTTime.clear(); hitPMTCharge.clear(); - for (int pmtc = 0; pmtc < ev->GetPMTCount(); pmtc++) { - RAT::DS::PMT *pmt = ev->GetPMT(pmtc); + for (int pmtc : ev->GetAllPMTIDs()) { + RAT::DS::PMT *pmt = ev->GetOrCreatePMT(pmtc); hitPMTID.push_back(pmt->GetID()); hitPMTTime.push_back(pmt->GetTime()); hitPMTCharge.push_back(pmt->GetCharge()); @@ -447,8 +447,8 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { fitPeak.clear(); } - for (int pmtc = 0; pmtc < ev->GetDigitPMTCount(); pmtc++) { - RAT::DS::DigitPMT *digitpmt = ev->GetDigitPMT(pmtc); + for (int pmtc : ev->GetAllDigitPMTIDs()) { + RAT::DS::DigitPMT *digitpmt = ev->GetOrCreateDigitPMT(pmtc); digitPMTID.push_back(digitpmt->GetID()); digitTime.push_back(digitpmt->GetDigitizedTime()); digitCharge.push_back(digitpmt->GetDigitizedCharge()); From 684514efa20a2e3dae341d646ca89372bce6bd7e Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 3 Sep 2024 20:37:01 -0400 Subject: [PATCH 056/103] Fix pmt loops in fitters --- src/fit/src/ClassifyChargeBalance.cc | 2 +- src/fit/src/FitCentroidProc.cc | 2 +- src/fit/src/FitPathProc.cc | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/fit/src/ClassifyChargeBalance.cc b/src/fit/src/ClassifyChargeBalance.cc index 078cdbb2..8152f4aa 100644 --- a/src/fit/src/ClassifyChargeBalance.cc +++ b/src/fit/src/ClassifyChargeBalance.cc @@ -13,7 +13,7 @@ Processor::Result ClassifyChargeBalance::Event(DS::Root *ds, DS::EV *ev) { int hitcount = ev->GetPMTCount(); double qsumsquare = 0; double qsum = 0; - for (int pmtc = 0; pmtc < hitcount; pmtc++) { + for (int pmtc : ev->GetAllPMTIDs()) { DS::PMT *pmt = ev->GetOrCreatePMT(pmtc); double charge = pmt->GetCharge(); qsumsquare += pow(charge, 2); diff --git a/src/fit/src/FitCentroidProc.cc b/src/fit/src/FitCentroidProc.cc index cf0a8d81..832e016e 100644 --- a/src/fit/src/FitCentroidProc.cc +++ b/src/fit/src/FitCentroidProc.cc @@ -32,7 +32,7 @@ Processor::Result FitCentroidProc::Event(DS::Root *ds, DS::EV *ev) { double totalQ = 0; TVector3 centroid(0.0, 0.0, 0.0); - for (int i = 0; i < ev->GetPMTCount(); i++) { + for (int i : ev->GetAllPMTIDs()) { DS::PMT *pmt = ev->GetOrCreatePMT(i); double Qpow = 0.0; diff --git a/src/fit/src/FitPathProc.cc b/src/fit/src/FitPathProc.cc index 87d8bd8d..dbe58f51 100644 --- a/src/fit/src/FitPathProc.cc +++ b/src/fit/src/FitPathProc.cc @@ -202,7 +202,7 @@ Processor::Result FitPathProc::Event(DS::Root *ds, DS::EV *ev) { DS::Run *run = DS::RunStore::Get()->GetRun(ds); DS::PMTInfo *pmtinfo = run->GetPMTInfo(); - for (int i = 0; i < ev->GetPMTCount(); i++) { + for (int i : ev->GetAllPMTIDs()) { DS::PMT *pmt = ev->GetOrCreatePMT(i); TVector3 pmtpos = pmtinfo->GetPosition(pmt->GetID()); TVector3 pmtdir = pmtinfo->GetDirection(pmt->GetID()); From 0bdfb1a0e288a88fe91db71bcb744036051ebd5a Mon Sep 17 00:00:00 2001 From: James Shen Date: Wed, 4 Sep 2024 11:24:59 -0400 Subject: [PATCH 057/103] Fix PMT calls masked out by tensorflow --- src/fit/src/FitTensorProc.cc | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/fit/src/FitTensorProc.cc b/src/fit/src/FitTensorProc.cc index 2d342a33..128a90d2 100644 --- a/src/fit/src/FitTensorProc.cc +++ b/src/fit/src/FitTensorProc.cc @@ -68,8 +68,8 @@ cppflow::tensor FitTensorProc::CreateProjection(DS::EV *ev, DS::PMTInfo *pmtinfo float red[xdim][ydim]; float green[xdim][ydim]; - for (int pmtid = 0; pmtid < ev->GetPMTCount(); pmtid++) { - DS::PMT *pmt = ev->GetPMT(pmtid); + for (int pmtid : ev->GetAllPMTIDs()) { + DS::PMT *pmt = ev->GetOrCreatePMT(pmtid); TVector3 pmtpos = pmtinfo->GetPosition(pmt->GetID()); TVector3 pos = pmtpos - coordinates; double hittime = pmt->GetTime(); From 100eaf35daec416963542df512821ea1a6d045fc Mon Sep 17 00:00:00 2001 From: James Shen Date: Wed, 4 Sep 2024 11:28:30 -0400 Subject: [PATCH 058/103] v2.2.1 version bump --- CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 76411923..d0b49214 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,5 +1,5 @@ cmake_minimum_required(VERSION 3.11...3.14) -project(ratpac VERSION 2.2.0 +project(ratpac VERSION 2.2.1 DESCRIPTION "RAT-PAC" LANGUAGES C CXX) From d95e620080a870201859cd32f0ee30709a1243d3 Mon Sep 17 00:00:00 2001 From: Marc Bergevin Date: Mon, 9 Sep 2024 11:20:43 -0700 Subject: [PATCH 059/103] Adding a timestamp variable to the ntuple output. This variable represent the global tracking of time since the start of run in ns. Currently no triggering effect are applied with the exeption that the ULong64_t format forces the variable to be integer. --- macros/validation/electron.mac | 5 ++++- src/io/include/RAT/OutNtupleProc.hh | 1 + src/io/src/OutNtupleProc.cc | 5 ++++- 3 files changed, 9 insertions(+), 2 deletions(-) diff --git a/macros/validation/electron.mac b/macros/validation/electron.mac index 455baaf8..a850e660 100644 --- a/macros/validation/electron.mac +++ b/macros/validation/electron.mac @@ -13,9 +13,12 @@ /rat/proc classifychargebalance /rat/proclast outroot +/rat/proclast outntuple /generator/add combo gun:point:poisson /generator/vtx/set e- 0.0 0.0 0.0 2.5 /generator/pos/set 0.0 0.0 0.0 +/generator/rate/set 2.0 -/run/beamOn 100 + +/run/beamOn 1000 diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index f8bfc34a..bb768531 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -88,6 +88,7 @@ class OutNtupleProc : public Processor { int subev; int nhits; double triggerTime; + ULong64_t timestamp; double timeSinceLastTrigger_us; // MC Summary Information double scintEdep; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index b90a9e33..3c449cd4 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -98,7 +98,8 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("evid", &evid); outputTree->Branch("subev", &subev); outputTree->Branch("nhits", &nhits); - outputTree->Branch("triggerTime", &triggerTime); + outputTree->Branch("triggerTime", &triggerTime);// Local trigger time + outputTree->Branch("timestamp",×tamp); // Global trigger time outputTree->Branch("timeSinceLastTrigger_us", &timeSinceLastTrigger_us); // MC Information outputTree->Branch("mcid", &mcid); @@ -360,6 +361,8 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { DS::EV *ev = ds->GetEV(subev); evid = ev->GetID(); triggerTime = ev->GetCalibratedTriggerTime(); + timestamp = (mc->GetUTC().GetSec() -runBranch->GetStartTime().GetSec() )* 1e9 + \ +(mc->GetUTC().GetNanoSec() - runBranch->GetStartTime().GetNanoSec()) + triggerTime; timeSinceLastTrigger_us = ev->GetDeltaT(); auto fitVector = ev->GetFitResults(); std::map fitvalues; From 92649ed63225c205a5db50964d7376fda1a5f67d Mon Sep 17 00:00:00 2001 From: Marc Bergevin Date: Mon, 9 Sep 2024 14:09:55 -0700 Subject: [PATCH 060/103] Provided requested changes by Tanner. mc DAQs needed to be modified, default output from DS:EV::SetUTC was not set as far as I could see. --- macros/validation/electron.mac | 3 +-- src/daq/src/LessSimpleDAQProc.cc | 1 + src/daq/src/SimpleDAQProc.cc | 2 +- src/daq/src/SplitEVDAQProc.cc | 1 + src/io/include/RAT/OutNtupleProc.hh | 2 +- src/io/src/OutNtupleProc.cc | 8 ++++---- 6 files changed, 9 insertions(+), 8 deletions(-) diff --git a/macros/validation/electron.mac b/macros/validation/electron.mac index a850e660..9a258d10 100644 --- a/macros/validation/electron.mac +++ b/macros/validation/electron.mac @@ -13,7 +13,6 @@ /rat/proc classifychargebalance /rat/proclast outroot -/rat/proclast outntuple /generator/add combo gun:point:poisson /generator/vtx/set e- 0.0 0.0 0.0 2.5 @@ -21,4 +20,4 @@ /generator/rate/set 2.0 -/run/beamOn 1000 +/run/beamOn 100 diff --git a/src/daq/src/LessSimpleDAQProc.cc b/src/daq/src/LessSimpleDAQProc.cc index da924132..de7bb829 100644 --- a/src/daq/src/LessSimpleDAQProc.cc +++ b/src/daq/src/LessSimpleDAQProc.cc @@ -202,6 +202,7 @@ Processor::Result LessSimpleDAQProc::DSEvent(DS::Root *ds) { // regster total charge of one subevent ev->SetTotalCharge(totalQ); + ev->SetUTC(mc->GetUTC()); } return Processor::OK; diff --git a/src/daq/src/SimpleDAQProc.cc b/src/daq/src/SimpleDAQProc.cc index bd8358e5..bad4d39f 100644 --- a/src/daq/src/SimpleDAQProc.cc +++ b/src/daq/src/SimpleDAQProc.cc @@ -61,7 +61,7 @@ Processor::Result SimpleDAQProc::DSEvent(DS::Root *ds) { calibQ += charge; } } - + ev->SetUTC(mc->GetUTC()); ev->SetTotalCharge(totalQ); // ev->SetCalibQ(calibQ); diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index cfcb9c25..367c0a66 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -142,6 +142,7 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { DS::EV *ev = ds->AddNewEV(); ev->SetID(fEventCounter++); ev->SetCalibratedTriggerTime(tt); + ev->SetUTC(mc->GetUTC()); ev->SetDeltaT(tt - lastTrigger); lastTrigger = tt; double totalEVCharge = 0; // What does total charge get used for? diff --git a/src/io/include/RAT/OutNtupleProc.hh b/src/io/include/RAT/OutNtupleProc.hh index bb768531..c1c184e0 100644 --- a/src/io/include/RAT/OutNtupleProc.hh +++ b/src/io/include/RAT/OutNtupleProc.hh @@ -88,7 +88,7 @@ class OutNtupleProc : public Processor { int subev; int nhits; double triggerTime; - ULong64_t timestamp; + ULong64_t timestamp; double timeSinceLastTrigger_us; // MC Summary Information double scintEdep; diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 3c449cd4..98ce85af 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -98,8 +98,8 @@ bool OutNtupleProc::OpenFile(std::string filename) { outputTree->Branch("evid", &evid); outputTree->Branch("subev", &subev); outputTree->Branch("nhits", &nhits); - outputTree->Branch("triggerTime", &triggerTime);// Local trigger time - outputTree->Branch("timestamp",×tamp); // Global trigger time + outputTree->Branch("triggerTime", &triggerTime); // Local trigger time + outputTree->Branch("timestamp", ×tamp); // Global trigger time outputTree->Branch("timeSinceLastTrigger_us", &timeSinceLastTrigger_us); // MC Information outputTree->Branch("mcid", &mcid); @@ -361,8 +361,8 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { DS::EV *ev = ds->GetEV(subev); evid = ev->GetID(); triggerTime = ev->GetCalibratedTriggerTime(); - timestamp = (mc->GetUTC().GetSec() -runBranch->GetStartTime().GetSec() )* 1e9 + \ -(mc->GetUTC().GetNanoSec() - runBranch->GetStartTime().GetNanoSec()) + triggerTime; + timestamp = (ev->GetUTC().GetSec() - runBranch->GetStartTime().GetSec()) * 1e9 + + (ev->GetUTC().GetNanoSec() - runBranch->GetStartTime().GetNanoSec()) + triggerTime; timeSinceLastTrigger_us = ev->GetDeltaT(); auto fitVector = ev->GetFitResults(); std::map fitvalues; From d7ab63f31b40da0b9bc975662b5ab8e90f7362c8 Mon Sep 17 00:00:00 2001 From: James Shen Date: Wed, 11 Sep 2024 15:55:25 -0400 Subject: [PATCH 061/103] Write total charge in Waveform analysis processing func --- src/daq/src/WaveformAnalysis.cc | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 1ffe832e..ffe8c09c 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -439,6 +439,7 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { DS::Run* run = DS::RunStore::GetRun(ds->GetRunID()); const DS::ChannelStatus& ch_status = run->GetChannelStatus(); std::vector pmt_ids = dsdigit->GetIDs(); + double total_charge = 0; for (int pmt_id : pmt_ids) { // Do not analyze negative pmtid channels, since they do not correspond to real PMTs. if (pmt_id < 0) continue; @@ -446,6 +447,10 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { DS::DigitPMT* digitpmt = ev->GetOrCreateDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); + if (digitpmt->GetNCrossings() > 0) { + total_charge += digitpmt->GetDigitizedCharge(); + } + ev->SetTotalCharge(total_charge); if (fZeroSuppress) { if (digitpmt->GetNCrossings() <= 0) { size_t nerased = ev->EraseDigitPMT(pmt_id); From a58d1a9245e1cd08e17513c2d3111eb14f892d1f Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 12 Sep 2024 17:30:19 -0400 Subject: [PATCH 062/103] Make sure digitizer is cleared between each event --- src/daq/include/RAT/Digitizer.hh | 1 + src/daq/src/Digitizer.cc | 3 +++ 2 files changed, 4 insertions(+) diff --git a/src/daq/include/RAT/Digitizer.hh b/src/daq/include/RAT/Digitizer.hh index fcf78179..765b6d27 100644 --- a/src/daq/include/RAT/Digitizer.hh +++ b/src/daq/include/RAT/Digitizer.hh @@ -34,6 +34,7 @@ class Digitizer { virtual void SetDigitizerType(std::string); virtual void DigitizePMT(DS::MCPMT *mcpmt, int pmtID, double triggerTime, DS::PMTInfo *pmtinfo); + virtual void ClearWaveforms(); virtual void DigitizeSum(DS::EV *ev); virtual void AddChannel(int ichannel, PMTWaveform pmtwf); diff --git a/src/daq/src/Digitizer.cc b/src/daq/src/Digitizer.cc index c718c2a7..2fd8a6f9 100644 --- a/src/daq/src/Digitizer.cc +++ b/src/daq/src/Digitizer.cc @@ -37,6 +37,8 @@ void Digitizer::DigitizePMT(DS::MCPMT* mcpmt, int pmtID, double triggerTime, DS: AddChannel(pmtID, pmtwfm); } +void Digitizer::ClearWaveforms() { fDigitWaveForm.clear(); } + void Digitizer::DigitizeSum(DS::EV* ev) { DS::Digit digit; @@ -53,6 +55,7 @@ void Digitizer::DigitizeSum(DS::EV* ev) { digit.SetTerminationOhms(fTerminationOhms); ev->SetDigitizer(digit); + ClearWaveforms(); } // Add channel to digitizer and immdediatly digitize analogue waveform From 12df0ea8c7a8b35c39d4638e80e3daec0a721a04 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 12 Sep 2024 17:35:09 -0400 Subject: [PATCH 063/103] Rename digitizesum to a more sensible name, WriteToEvent --- src/daq/include/RAT/Digitizer.hh | 2 +- src/daq/src/Digitizer.cc | 2 +- src/daq/src/SplitEVDAQProc.cc | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/daq/include/RAT/Digitizer.hh b/src/daq/include/RAT/Digitizer.hh index 765b6d27..0bb31e63 100644 --- a/src/daq/include/RAT/Digitizer.hh +++ b/src/daq/include/RAT/Digitizer.hh @@ -35,7 +35,7 @@ class Digitizer { virtual void SetDigitizerType(std::string); virtual void DigitizePMT(DS::MCPMT *mcpmt, int pmtID, double triggerTime, DS::PMTInfo *pmtinfo); virtual void ClearWaveforms(); - virtual void DigitizeSum(DS::EV *ev); + virtual void WriteToEvent(DS::EV *ev); virtual void AddChannel(int ichannel, PMTWaveform pmtwf); void AddWaveformGenerator(std::string modelName); diff --git a/src/daq/src/Digitizer.cc b/src/daq/src/Digitizer.cc index 2fd8a6f9..bd05cdb4 100644 --- a/src/daq/src/Digitizer.cc +++ b/src/daq/src/Digitizer.cc @@ -39,7 +39,7 @@ void Digitizer::DigitizePMT(DS::MCPMT* mcpmt, int pmtID, double triggerTime, DS: void Digitizer::ClearWaveforms() { fDigitWaveForm.clear(); } -void Digitizer::DigitizeSum(DS::EV* ev) { +void Digitizer::WriteToEvent(DS::EV* ev) { DS::Digit digit; std::map> waveforms = fDigitWaveForm; diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index 367c0a66..f7103c7b 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -185,7 +185,7 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { } // Done looping over PMTs if (fDigitize) { - fDigitizer->DigitizeSum(ev); + fDigitizer->WriteToEvent(ev); } ev->SetTotalCharge(totalEVCharge); From d943cb1c2f8eceac98174d43c24a048bb93405f4 Mon Sep 17 00:00:00 2001 From: Ravi Pitelka <66141981+rpitelka@users.noreply.github.com> Date: Wed, 18 Sep 2024 14:55:11 -0400 Subject: [PATCH 064/103] Extract common waveform analysis utility functions (#170) * Add waveform utility files. * Fix errors, now compiles correctly. * Fix errors. * Fix formatting. * Improve comments, add more functions, and make other requested changes. * Implement more requested changes. --------- Co-authored-by: Ravi Pitelka --- src/util/CMakeLists.txt | 1 + src/util/include/RAT/WaveformUtil.hh | 91 ++++++++++++ src/util/src/WaveformUtil.cc | 206 +++++++++++++++++++++++++++ 3 files changed, 298 insertions(+) create mode 100644 src/util/include/RAT/WaveformUtil.hh create mode 100644 src/util/src/WaveformUtil.cc diff --git a/src/util/CMakeLists.txt b/src/util/CMakeLists.txt index 10cbec80..38151e0b 100644 --- a/src/util/CMakeLists.txt +++ b/src/util/CMakeLists.txt @@ -11,6 +11,7 @@ add_library(util OBJECT src/SilenceRooFitBanner.cc src/SimpsIntegral.cc src/StringUtil.cc + src/WaveformUtil.cc src/quadrature/Evaluateable.cc src/quadrature/Quadrature.cc src/quadrature/FixedTrapezoidalQuadrature.cc diff --git a/src/util/include/RAT/WaveformUtil.hh b/src/util/include/RAT/WaveformUtil.hh new file mode 100644 index 00000000..952d34cd --- /dev/null +++ b/src/util/include/RAT/WaveformUtil.hh @@ -0,0 +1,91 @@ +#ifndef __RAT_WaveformUtil__ +#define __RAT_WaveformUtil__ + +#include + +#include +#include + +namespace RAT { + +namespace WaveformUtil { + +const int INVALID = 9999; + +// converts waveform from ADC counts to voltage (mV); expects pedestal in ADC counts if given +std::vector ADCtoVoltage(const std::vector& adcWaveform, double voltageRes, double pedestal = 0); + +// Calculate baseline +template +double CalculatePedestal(const std::vector& waveform, int pedWindowLow, int pedWindowHigh) { + /* + Template: Calculate the baseline in the window between low - high samples. + */ + + double pedestal = 0; + + if (pedWindowLow >= waveform.size()) { + Log::Die("WaveformUtil: Start of pedestal window must be before end of waveform."); + } else if (pedWindowLow >= pedWindowHigh) { + Log::Die("WaveformUtil: Start of pedestal window must be before end of pedestal window."); + } else if (pedWindowHigh > waveform.size()) { + Log::Die("WaveformUtil: End of pedestal window must be at most end of waveform."); + } + + // Ensure end of pedestal window is less than waveform size + pedWindowHigh = (pedWindowHigh > waveform.size()) ? waveform.size() : pedWindowHigh; + + for (int i = pedWindowLow; i < pedWindowHigh; i++) { + pedestal += waveform[i]; + } + pedestal /= (pedWindowHigh - pedWindowLow); + return pedestal; +} + +// Calculate baseline in ADC counts +inline double CalculatePedestalADC(const std::vector& waveform, int pedWindowLow, int pedWindowHigh) { + return CalculatePedestal(waveform, pedWindowLow, pedWindowHigh); +}; + +// Calculate baseline in mV +inline double CalculatePedestalmV(const std::vector& waveform, int pedWindowLow, int pedWindowHigh) { + return CalculatePedestal(waveform, pedWindowLow, pedWindowHigh); +}; + +std::pair FindHighestPeak( + const std::vector& voltageWaveform); // Returns pair (peak_sample, peak_voltage) + +// Find the sample where a threshold crossing occurs before a given peak +int GetThresholdCrossingBeforePeak(const std::vector& waveform, int peakSample, double voltageThreshold, + int lookBack, double timeStep); + +// Find total number of threshold crossings +int GetNCrossings(const std::vector& waveform, double voltageThreshold); + +// Find total number of threshold crossings, time over threshold, and voltage over threshold +std::tuple GetCrossingsInfo( + const std::vector& waveform, double voltageThreshold, + double timeStep); // Return tuple (nCrossings, time_over_threshold_voltage_over_threshold) + +// Apply a constant fraction discriminator to calculate the threshold crossing for a given peak +double CalculateTimeCFD(const std::vector& waveform, int peakSample, double constFrac, int lookBack, + double timeStep); + +// calculate charge (pC) from voltage (mV) +inline double VoltagetoCharge(double voltage, double timeStep, double termOhms) { + return (-voltage * timeStep) / termOhms; +}; + +// Integrate around a peak to find charge +double IntegratePeak(const std::vector& waveform, int peakSample, int intWindowLow, int intWindowHigh, + double timeStep, double termOhms); + +// Integrate waveform in sliding windows to find total charge +double IntegrateSliding(const std::vector& waveform, int slidingWindow, double chargeThresh, double timeStep, + double termOhms); + +} // namespace WaveformUtil + +} // namespace RAT + +#endif diff --git a/src/util/src/WaveformUtil.cc b/src/util/src/WaveformUtil.cc new file mode 100644 index 00000000..cb6d384a --- /dev/null +++ b/src/util/src/WaveformUtil.cc @@ -0,0 +1,206 @@ +#include +#include + +namespace RAT { + +namespace WaveformUtil { + +std::vector ADCtoVoltage(const std::vector& adcWaveform, double voltageRes, double pedestal) { + /* + Convert a waveform from ADC units to voltage (mV), and optionally subtract a pedestal (given in ADC units) + */ + std::vector voltageWaveform; + voltageWaveform.reserve(adcWaveform.size()); + + for (UShort_t adcVal : adcWaveform) { + voltageWaveform.push_back((adcVal - pedestal) * voltageRes); + } + + return voltageWaveform; +} + +std::pair FindHighestPeak(const std::vector& voltageWaveform) { + /* + Calculate the highest peak (in mV) and the corresponding sample. + */ + double voltagePeak = INVALID; + int samplePeak = INVALID; + for (int i = 0; i < voltageWaveform.size(); i++) { + double voltage = voltageWaveform[i]; + // Downward going pulse + if (voltage < voltagePeak) { + voltagePeak = voltage; + samplePeak = i; + } + } + return std::make_pair(samplePeak, voltagePeak); +} + +int GetThresholdCrossingBeforePeak(const std::vector& waveform, int peakSample, double voltageThreshold, + int lookBack, double timeStep) { + /* + Identifies the sample at which threshold crossing occurs before a given peak + */ + int thresholdCrossing = 0; + // Make sure we don't scan past the beginning of the waveform + int lb = peakSample - int(lookBack / timeStep); + int back_window = (lb > 0) ? lb : 0; + + if (back_window >= waveform.size()) { + Log::Die("WaveformUtil: Start of lookback window must be before end of waveform."); + } else if (back_window >= peakSample) { + Log::Die("WaveformUtil: Start of lookback window must be before peak."); + } else if (peakSample >= waveform.size()) { + Log::Die("WaveformUtil: Peak must be before end of waveform."); + } else if (waveform.at(peakSample) > voltageThreshold) { + Log::Die("WaveformUtil: Peak must be above threshold."); + } + + // Start at the peak and scan backwards + for (int i = peakSample; i > back_window; i--) { + double voltage = waveform[i]; + + if (voltage > voltageThreshold) { + thresholdCrossing = i; + break; + } + + // Reached the begining of the waveform + // returned an invalid value + if (i == back_window) { + thresholdCrossing = INVALID; // Invalid value for bad waveforms + break; + } + } + return thresholdCrossing; +} + +int GetNCrossings(const std::vector& waveform, double voltageThreshold) { + /* + Calculates the total number of threshold crossings + */ + int nCrossings = 0; + + bool crossed = false; + // Scan over the entire waveform + for (int i = 0; i < waveform.size(); i++) { + double voltage = waveform[i]; + + // If we crossed below threshold + if (voltage < voltageThreshold) { + // Not already below thresh, count the crossing + if (!crossed) { + nCrossings += 1; + } + // Mark that we crossed + crossed = true; + } + // If we are above threshold + if (voltage > voltageThreshold) { + crossed = false; + } + } + return nCrossings; +} + +std::tuple GetCrossingsInfo(const std::vector& waveform, double voltageThreshold, + double timeStep) { + /* + Calculates the total number of threshold crossings, time over threshold, and voltage over threshold + */ + int nCrossings = 0; + double timeOverThreshold = 0; + double voltageOverThreshold = 0; + + bool crossed = false; + // Scan over the entire waveform + for (int i = 0; i < waveform.size(); i++) { + double voltage = waveform[i]; + + // If we crossed below threshold + if (voltage < voltageThreshold) { + // Not already below thresh, count the crossing + if (!crossed) { + nCrossings += 1; + } + // Count the time over threshold, mark that we crossed + timeOverThreshold += timeStep; + voltageOverThreshold += voltage; + crossed = true; + } + // If we are above threshold + if (voltage > voltageThreshold) { + crossed = false; + } + } + return std::make_tuple(nCrossings, timeOverThreshold, voltageOverThreshold); +} + +double CalculateTimeCFD(const std::vector& waveform, int peakSample, double constFrac, int lookBack, + double timeStep) { + /* + Apply constant-fraction discriminator for a given peak + */ + double voltageThreshold = constFrac * waveform.at(peakSample); + int time = GetThresholdCrossingBeforePeak(waveform, peakSample, voltageThreshold, lookBack, timeStep); + // Linearly interpolate threshold crossing time, if time is not last sample of waveform + double dt = 0; + if (time < waveform.size() - 1) { + double deltav = waveform.at(time + 1) - waveform.at(time); + dt = (voltageThreshold - waveform.at(time)) / deltav; + } + return (time + dt) * timeStep; +} + +double IntegratePeak(const std::vector& waveform, int peakSample, int intWindowLow, int intWindowHigh, + double timeStep, double termOhms) { + /* + Integrate the digitized waveform around the given peak to calculate charge + */ + double charge = 0; + int windowStart = peakSample - intWindowLow; + int windowEnd = peakSample + intWindowHigh; + + if (windowStart >= waveform.size()) { + charge = INVALID; // Invalid value for bad waveforms + return charge; + } + + // Make sure not to integrate past the end of the waveform + windowEnd = (windowEnd > waveform.size()) ? waveform.size() : windowEnd; + // Make sure not to integrate before the waveform starts + windowStart = (windowStart < 0) ? 0 : windowStart; + + for (int i = windowStart; i < windowEnd; i++) { + double voltage = waveform[i]; + charge += VoltagetoCharge(voltage, timeStep, termOhms); // in pC + } + return charge; +} + +double IntegrateSliding(const std::vector& waveform, int slidingWindow, double chargeThresh, double timeStep, + double termOhms) { + /* + Integrate the digitized waveform over sliding windows to calculate a total charge + */ + double total_charge = 0; + int nsliding = int(waveform.size() / slidingWindow); + + for (int i = 0; i < nsliding; i++) { + double charge = 0; + int sample_start = i * slidingWindow; + int sample_end = (i + 1) * slidingWindow; + for (int j = sample_start; j < sample_end; j++) { + double voltage = waveform[j]; + charge += VoltagetoCharge(voltage, timeStep, termOhms); // in pC + } + if (charge > chargeThresh) { + total_charge += charge; + } + } + return total_charge; +} + +} // namespace WaveformUtil + +} // namespace RAT From d5d88186c8616a6e10bbd6bb022308c4875045a2 Mon Sep 17 00:00:00 2001 From: Tanner Kaptanoglu Date: Mon, 23 Sep 2024 11:28:31 -0700 Subject: [PATCH 065/103] remove unused variable, made obsolete by digitPMT (#168) --- src/ds/include/RAT/DS/PMT.hh | 42 +----------------------------------- 1 file changed, 1 insertion(+), 41 deletions(-) diff --git a/src/ds/include/RAT/DS/PMT.hh b/src/ds/include/RAT/DS/PMT.hh index 0cf2fa02..d29265ab 100644 --- a/src/ds/include/RAT/DS/PMT.hh +++ b/src/ds/include/RAT/DS/PMT.hh @@ -30,52 +30,12 @@ class PMT : public TObject { virtual void SetTime(Double_t _time) { this->time = _time; } virtual Double_t GetTime() { return time; } - /** Processed waveform time in ns */ - virtual void SetDigitizedTime(Double_t _dTime) { this->dTime = _dTime; } - virtual Double_t GetDigitizedTime() { return dTime; } - - /** Processed waveform charge in pC */ - virtual void SetDigitizedCharge(Double_t _dCharge) { this->dCharge = _dCharge; } - virtual Double_t GetDigitizedCharge() { return dCharge; } - - /** Processed waveform total charge in pC */ - virtual void SetDigitizedTotalCharge(Double_t _dTCharge) { this->dTCharge = _dTCharge; } - virtual Double_t GetDigitizedTotalCharge() { return dTCharge; } - - /** Processed waveform timing in ns */ - virtual void SetInterpolatedTime(Double_t _iTime) { this->iTime = _iTime; } - virtual Double_t GetInterpolatedTime() { return iTime; } - - virtual void SetSampleTime(Int_t _sTime) { this->sTime = _sTime; } - virtual Int_t GetSampleTime() { return sTime; } - - virtual void SetNCrossings(Int_t _nCrossings) { this->nCrossings = _nCrossings; } - virtual Int_t GetNCrossings() { return nCrossings; } - - virtual void SetTimeOverThreshold(Double_t _timeOverThresh) { this->timeOverThresh = _timeOverThresh; } - virtual Double_t GetTimeOverThreshold() { return timeOverThresh; } - - virtual void SetPedestal(Double_t _pedestal) { this->pedestal = _pedestal; } - virtual Double_t GetPedestal() { return pedestal; } - - virtual void SetPeakVoltage(Double_t _peak) { this->peak = _peak; } - virtual Double_t GetPeakVoltage() { return peak; } - - ClassDef(PMT, 4); + ClassDef(PMT, 5); protected: Int_t id; Double_t charge; Double_t time; - Double_t dTime; - Double_t dCharge; - Double_t dTCharge; - Double_t iTime; - Int_t sTime; - Int_t nCrossings; - Double_t timeOverThresh; - Double_t pedestal; - Double_t peak; }; } // namespace DS From b7059cbb230a58d3f6bf7ba7212dc983defb6433 Mon Sep 17 00:00:00 2001 From: So Young Jeon <25533558+syjeon162@users.noreply.github.com> Date: Tue, 1 Oct 2024 13:20:36 -0400 Subject: [PATCH 066/103] add gaussian pulse model to WaveformGenerator (#175) * add gaussian pulse model to WaveformGenerator * update PMTPULSES.ratdb with gaussian pulse model example * change parameter names to differentiate lognormal and gaussian pulse models * align lognormal pulse peaks with gaussian pulses * fix wrong ratdb entry name in WaveformGenerator --- ratdb/PMTPULSES.ratdb | 15 +++-- src/daq/include/RAT/PMTPulse.hh | 14 +++-- src/daq/include/RAT/PMTWaveformGenerator.hh | 13 ++++- src/daq/src/PMTPulse.cc | 56 +++++++++++------- src/daq/src/PMTWaveformGenerator.cc | 64 ++++++++++++++++++--- 5 files changed, 122 insertions(+), 40 deletions(-) diff --git a/ratdb/PMTPULSES.ratdb b/ratdb/PMTPULSES.ratdb index c461438c..758af412 100644 --- a/ratdb/PMTPULSES.ratdb +++ b/ratdb/PMTPULSES.ratdb @@ -7,7 +7,7 @@ //Pulse type to use for generation. Options are analytic or datadriven pulse_type: "analytic", - //Pulse shape to use for analytic type. Current option is only lognormal + //Pulse shape to use for analytic type. Options are lognormal or gaussian. pulse_shape: "lognormal", //Universal pulse parameters @@ -17,13 +17,18 @@ pulse_time_offset: 60.0, termination_ohms: 50.0, - //Shape parameters (should only be used for analytic type option, if necessary) - pulse_width: 0.15, - pulse_mean: 10.5, + //Shape parameters for analytic, lognormal shape option + lognormal_width: 0.15, + lognormal_mean: 10.5, + + //Shape parameters for analytic, gaussian shape option + //given as 1D PDF of gaussian widths + gaussian_width: [1.4, 1.5, 1.6], + gaussian_width_prob: [0.0, 1.0, 0.0], //Explicit pulse shape (should only be used for datadriven type option) //This entry is a discretized version of lognormal with the above params - pulse_shape_times: [ 0., 0.02502503, 0.05005005, 0.07507508, 0.1001001 , 0.12512513, 0.15015015, 0.17517518, 0.2002002 , 0.22522523, 0.25025025, 0.27527528, 0.3003003 , 0.32532533, 0.35035035, 0.37537538, 0.4004004 , 0.42542543, 0.45045045, 0.47547548, 0.5005005 , 0.52552553, 0.55055055, 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a/src/daq/include/RAT/PMTPulse.hh b/src/daq/include/RAT/PMTPulse.hh index 5cfd242b..f3365a72 100644 --- a/src/daq/include/RAT/PMTPulse.hh +++ b/src/daq/include/RAT/PMTPulse.hh @@ -17,12 +17,16 @@ class PMTPulse { virtual void SetPulseMin(double _fPulseMin) { fPulseMin = _fPulseMin; }; virtual void SetPulsePolarity(bool _fPulsePolarity) { fPulsePolaritySign = _fPulsePolarity ? -1 : 1; }; - virtual void SetPulseMean(double _fPulseMean) { fPulseMean = _fPulseMean; }; - virtual void SetPulseWidth(double _fPulseWidth) { fPulseWidth = _fPulseWidth; }; + virtual void SetLogNPulseMean(double _fLogNPulseMean) { fLogNPulseMean = _fLogNPulseMean; }; + virtual void SetLogNPulseWidth(double _fLogNPulseWidth) { fLogNPulseWidth = _fLogNPulseWidth; }; + + virtual void SetGausPulseWidth(double _fGausPulseWidth) { fGausPulseWidth = _fGausPulseWidth; }; virtual void SetPulseTimes(std::vector _fPulseTimes) { fPulseTimes = _fPulseTimes; }; virtual void SetPulseValues(std::vector _fPulseValues) { fPulseValues = _fPulseValues; }; + virtual double GetDataDrivenPulseVal(double time); + virtual double GetPulseHeight(double time); virtual double GetPulseStartTime() { return fStartTime; }; @@ -38,8 +42,10 @@ class PMTPulse { int fPulsePolaritySign; - double fPulseMean; - double fPulseWidth; + double fLogNPulseMean; + double fLogNPulseWidth; + + double fGausPulseWidth; std::vector fPulseTimes; std::vector fPulseValues; diff --git a/src/daq/include/RAT/PMTWaveformGenerator.hh b/src/daq/include/RAT/PMTWaveformGenerator.hh index 14ee3081..dd138905 100644 --- a/src/daq/include/RAT/PMTWaveformGenerator.hh +++ b/src/daq/include/RAT/PMTWaveformGenerator.hh @@ -16,6 +16,9 @@ class PMTWaveformGenerator { virtual PMTWaveform GenerateWaveforms(DS::MCPMT* mcpmt, double triggerTime); + // pick width of waveform from PDF + double PickGaussianWidth(); + std::string fModelName; DBLinkPtr lpulse; @@ -30,8 +33,14 @@ class PMTWaveformGenerator { bool fPMTPulsePolarity; // negative is true, positive is false // Shape parameters - double fPMTPulseWidth; - double fPMTPulseMean; + // For lognormal pulse model + double fLogNPulseWidth; + double fLogNPulseMean; + + // For gaussian pulse model PDF + std::vector fGausPulseWidth; + std::vector fGausPulseWidthProb; + std::vector fGausPulseWidthProbCumu; // Explicit shape for data-driven pulses std::vector fPMTPulseShapeTimes; diff --git a/src/daq/src/PMTPulse.cc b/src/daq/src/PMTPulse.cc index f3801f9f..0142d6e2 100644 --- a/src/daq/src/PMTPulse.cc +++ b/src/daq/src/PMTPulse.cc @@ -14,33 +14,47 @@ PMTPulse::PMTPulse(std::string pulseType, std::string pulseShape) { fPulseShape = pulseShape; } +double PMTPulse::GetDataDrivenPulseVal(double time) { + if ((time < fPulseTimes[0]) || (time > fPulseTimes[fPulseTimes.size() - 1])) { + // pulse not defined for this value + return 0.; + } + int i = 0; + for (i = 0; i < fPulseTimes.size() - 1; i++) { + if (time > fPulseTimes[i]) { + continue; + } else if (time == fPulseTimes[i]) { + return fPulseValues[i]; + } else { + break; + } + } + // interpolate between points + return fPulseValues[i - 1] + + (fPulseValues[i] - fPulseValues[i - 1]) * (time - fPulseTimes[i - 1]) / (fPulseTimes[i] - fPulseTimes[i - 1]); +} + double PMTPulse::GetPulseHeight(double utime) { - double height = 0.0; double start_time = fStartTime + fPulseTimeOffset; double delta_t = utime - start_time; - if (delta_t > 0.0) { - double val = 0.0; - if (fPulseType == "analytic") { - if (fPulseShape == "lognormal") { - val = TMath::LogNormal(delta_t, fPulseWidth, 0., fPulseMean); + double val = 0.0; + if (fPulseType == "analytic") { + if (fPulseShape == "lognormal") { + if (delta_t > -fLogNPulseMean) { + val = TMath::LogNormal(delta_t, fLogNPulseWidth, -fLogNPulseMean, fLogNPulseMean); } - } else if (fPulseType == "datadriven") { - int i = 0; - for (i = 0; i < fPulseTimes.size() - 1; i++) { - if (delta_t > fPulseTimes[i]) { - continue; - } else if (delta_t == fPulseTimes[i]) { - return fPulseValues[i]; - } else { - break; - } - } - val = fPulseValues[i - 1] + (fPulseValues[i] - fPulseValues[i - 1]) * (delta_t - fPulseTimes[i - 1]) / - (fPulseTimes[i] - fPulseTimes[i - 1]); + } else if (fPulseShape == "gaussian") { + val = TMath::Gaus(delta_t, 0., fGausPulseWidth, kTRUE); + } + } else if (fPulseType == "datadriven") { + if (delta_t >= fPulseTimes[0]) { + GetDataDrivenPulseVal(delta_t); } - height = fPulseOffset + fPulsePolaritySign * (fPulseCharge * val); } + + double height = fPulseOffset + fPulsePolaritySign * (fPulseCharge * val); + if (abs(height) < fPulseMin) { height = 0; } @@ -48,4 +62,4 @@ double PMTPulse::GetPulseHeight(double utime) { return height; } -} // namespace RAT +} // namespace RAT \ No newline at end of file diff --git a/src/daq/src/PMTWaveformGenerator.cc b/src/daq/src/PMTWaveformGenerator.cc index a5dcd5f4..73c476c7 100644 --- a/src/daq/src/PMTWaveformGenerator.cc +++ b/src/daq/src/PMTWaveformGenerator.cc @@ -1,4 +1,5 @@ #include +#include #include namespace RAT { @@ -49,18 +50,59 @@ PMTWaveformGenerator::PMTWaveformGenerator(std::string modelName) { if (fPMTPulseType == "analytic") { if (fPMTPulseShape == "lognormal") { - fPMTPulseWidth = lpulse->GetD("pulse_width"); - fPMTPulseMean = lpulse->GetD("pulse_mean"); + fLogNPulseWidth = lpulse->GetD("lognormal_width"); + fLogNPulseMean = lpulse->GetD("lognormal_mean"); + } else if (fPMTPulseShape == "gaussian") { + // 1D PDF of widths for pulses modeled as gaussians + fGausPulseWidth = lpulse->GetDArray("gaussian_width"); + fGausPulseWidthProb = lpulse->GetDArray("gaussian_width_prob"); + + if (fGausPulseWidth.size() != fGausPulseWidthProb.size()) { + Log::Die("PMTWaveformGenerator: Widths and probability arrays are different in length."); + } + if (fGausPulseWidth.size() < 2) { + Log::Die("PMTWaveformGenerator: Cannot define a PDF with fewer than 2 points."); + } + + // set up PDF + double integral = 0.0; + fGausPulseWidthProbCumu = std::vector(fGausPulseWidth.size()); + fGausPulseWidthProbCumu[0] = 0.0; + for (size_t i = 0; i < fGausPulseWidth.size() - 1; i++) { + // trapezoidal integration + integral += + (fGausPulseWidth[i + 1] - fGausPulseWidth[i]) * (fGausPulseWidthProb[i] + fGausPulseWidthProb[i + 1]) / 2.0; + fGausPulseWidthProbCumu[i + 1] = integral; + } + for (size_t i = 0; i < fGausPulseWidth.size(); i++) { + // normalize PDF + fGausPulseWidthProb[i] /= integral; + fGausPulseWidthProbCumu[i] /= integral; + } } } if (fPMTPulseType == "datadriven") { fPMTPulseShapeTimes = lpulse->GetDArray("pulse_shape_times"); - fPMTPulseShapeValues = lpulse->GetDArray("pulse_values_times"); + fPMTPulseShapeValues = lpulse->GetDArray("pulse_shape_values"); } } PMTWaveformGenerator::~PMTWaveformGenerator() {} +double PMTWaveformGenerator::PickGaussianWidth() { + // choose pulse width from PDF + double rval = G4UniformRand(); + for (size_t i = 1; i < fGausPulseWidth.size(); i++) { + if (rval <= fGausPulseWidthProbCumu[i]) { + double dwidth = (fGausPulseWidth[i] - fGausPulseWidth[i - 1]); + double dprob = (fGausPulseWidthProbCumu[i] - fGausPulseWidthProbCumu[i - 1]); + // linear interpolation + return (rval - fGausPulseWidthProbCumu[i - 1]) * dwidth / dprob + fGausPulseWidth[i - 1]; + } + } + return fGausPulseWidth[fGausPulseWidth.size() - 1]; +} + PMTWaveform PMTWaveformGenerator::GenerateWaveforms(DS::MCPMT *mcpmt, double triggerTime) { PMTWaveform pmtwf; @@ -77,11 +119,17 @@ PMTWaveform PMTWaveformGenerator::GenerateWaveforms(DS::MCPMT *mcpmt, double tri pmtpulse->SetPulseStartTime(mcpe->GetFrontEndTime() - triggerTime); pmtpulse->SetPulsePolarity(fPMTPulsePolarity); - pmtpulse->SetPulseWidth(fPMTPulseWidth); - pmtpulse->SetPulseMean(fPMTPulseMean); - - pmtpulse->SetPulseTimes(fPMTPulseShapeTimes); - pmtpulse->SetPulseValues(fPMTPulseShapeValues); + if (fPMTPulseType == "analytic") { + if (fPMTPulseShape == "lognormal") { + pmtpulse->SetLogNPulseWidth(fLogNPulseWidth); + pmtpulse->SetLogNPulseMean(fLogNPulseMean); + } else if (fPMTPulseShape == "gaussian") { + pmtpulse->SetGausPulseWidth(PickGaussianWidth()); + } + } else if (fPMTPulseType == "datadriven") { + pmtpulse->SetPulseTimes(fPMTPulseShapeTimes); + pmtpulse->SetPulseValues(fPMTPulseShapeValues); + } } return pmtwf; From 23a837b71e607cca4d3d4f82acb620510b4967f6 Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Tue, 1 Oct 2024 13:21:51 -0400 Subject: [PATCH 067/103] Make channel status read from multiple tables (#176) * Make channel status read from multiple tables * Allow specifying channel number by range --- src/ds/include/RAT/DS/ChannelStatus.hh | 72 +++++++++++++++++++++----- 1 file changed, 58 insertions(+), 14 deletions(-) diff --git a/src/ds/include/RAT/DS/ChannelStatus.hh b/src/ds/include/RAT/DS/ChannelStatus.hh index 5bf1f545..f93c75fc 100644 --- a/src/ds/include/RAT/DS/ChannelStatus.hh +++ b/src/ds/include/RAT/DS/ChannelStatus.hh @@ -43,30 +43,74 @@ class ChannelStatus : public TObject { virtual void LinkPMT(int pmtid, int lcn) { if (lcn_to_index.find(lcn) == lcn_to_index.end()) { - warn << "PMT " << pmtid << " (LCN " << lcn << ") not found in channel_status, using defaults" << newline; - AddChannel(lcn, true, 0.0); + AddChannel(lcn, default_is_online, default_offset); } pmtid_to_index[pmtid] = lcn_to_index[lcn]; } + virtual void Load(const PMTInfo* pmtinfo, const std::string index = "") { - try { - info << "Using channel status table with index: " << index << newline; - DBLinkPtr lChStatus = DB::Get()->GetLink("channel_status", index); - std::vector lcns = lChStatus->GetIArray("channel_number"); - std::vector onlines = lChStatus->GetIArray("online"); - std::vector offsets = lChStatus->GetDArray("offset"); - for (size_t idx = 0; idx < lcns.size(); idx++) { - AddChannel(lcns[idx], onlines[idx], offsets[idx]); - } - } catch (DBNotFoundError& e) { - warn << "Channel Status table Not found!" << newline; - } for (int pmtid = 0; pmtid < pmtinfo->GetPMTCount(); pmtid++) { int lcn = pmtinfo->GetChannelNumber(pmtid); LinkPMT(pmtid, lcn); } + // cable offset + try { + DBLinkPtr lCableOffset = DB::Get()->GetLink("cable_offset", index); + std::vector lcns = get_lcns(lCableOffset); + std::vector values = lCableOffset->GetDArray("value"); + insert_values(lcns, values, &cable_offset); + } catch (DBNotFoundError& e) { + warn << "Cable offset table not found! Looking for table cable_offset[" << index << "]\n"; + } + // dead channels + try { + DBLinkPtr lChannelOnline = DB::Get()->GetLink("channel_online", index); + std::vector lcns = get_lcns(lChannelOnline); + std::vector values = lChannelOnline->GetIArray("value"); + insert_values(lcns, values, &online); + } catch (DBNotFoundError& e) { + warn << "Channel online table not found! Looking for table channel_online[" << index << "]\n"; + } + // read channel online } + std::vector get_lcns(DBLinkPtr& lTable) { + std::vector lcns; + // I'm sorry for the nested try catch blocks + try { + lcns = lTable->GetIArray("channel_number"); + } catch (DBNotFoundError& e) { + try { + std::vector lcn_range = lTable->GetIArray("channel_number_range"); + Log::Assert(lcn_range.size() == 2, "Expect a length-2 array for channel_number_range"); + Log::Assert(lcn_range.at(0) <= lcn_range.at(1), "begin element must be smaller or equal to end"); + for (int current_lcn = lcn_range.at(0); current_lcn <= lcn_range.at(1); current_lcn++) { + lcns.push_back(current_lcn); + } + } catch (DBNotFoundError& e) { + Log::Die("LCN cannot be specified!"); + } + } + return lcns; + } + + template + void insert_values(std::vector lcns, std::vector values, std::vector* target) { + Log::Assert(lcns.size() == values.size(), "LCN and value arrays are of different lengths!"); + for (size_t i = 0; i < lcns.size(); i++) { + int current_lcn = lcns.at(i); + if (lcn_to_index.find(current_lcn) == lcn_to_index.end()) { + LinkPMT(-current_lcn, current_lcn); + } + double current_value = values.at(i); + size_t insertion_index = lcn_to_index.at(current_lcn); + target->at(insertion_index) = current_value; + } + } + + static inline const double default_offset = 0.0; + static inline const int default_is_online = 1; + ClassDef(ChannelStatus, 1); protected: From d1e58c7992b4998faff6e8bcb6efcf8297cc94db Mon Sep 17 00:00:00 2001 From: Tanner Kaptanoglu Date: Tue, 1 Oct 2024 10:44:29 -0700 Subject: [PATCH 068/103] Remove waveform analysis from SplitEVDAQ, other small changes (#172) * zero suppress for simulation, add SetI and SetD for Digitizer class * remove waveform analysis from the DAQ * remove waveform analysis * remove unused changes * remove digitizer class changes --- src/daq/include/RAT/SplitEVDAQProc.hh | 4 ---- src/daq/include/RAT/WaveformAnalysis.hh | 2 ++ src/daq/src/SplitEVDAQProc.cc | 21 --------------------- src/daq/src/WaveformAnalysis.cc | 24 ++++++++++++++++-------- 4 files changed, 18 insertions(+), 33 deletions(-) diff --git a/src/daq/include/RAT/SplitEVDAQProc.hh b/src/daq/include/RAT/SplitEVDAQProc.hh index 9c8f1860..45d61f8f 100644 --- a/src/daq/include/RAT/SplitEVDAQProc.hh +++ b/src/daq/include/RAT/SplitEVDAQProc.hh @@ -4,7 +4,6 @@ #include #include #include -#include #include namespace RAT { @@ -16,7 +15,6 @@ class SplitEVDAQProc : public Processor { virtual Processor::Result DSEvent(DS::Root *ds); void SetD(std::string param, double value); void SetI(std::string param, int value); - void SetS(std::string param, std::string value); void BeginOfRun(DS::Run *run); @@ -39,8 +37,6 @@ class SplitEVDAQProc : public Processor { Digitizer *fDigitizer; std::string fDigitizerType; - - WaveformAnalysis *fWaveformAnalysis; }; } // namespace RAT diff --git a/src/daq/include/RAT/WaveformAnalysis.hh b/src/daq/include/RAT/WaveformAnalysis.hh index 7183e5ac..812794bb 100644 --- a/src/daq/include/RAT/WaveformAnalysis.hh +++ b/src/daq/include/RAT/WaveformAnalysis.hh @@ -38,6 +38,8 @@ class WaveformAnalysis : public Processor { double RunAnalysisOnTrigger(int pmtID, Digitizer *fDigitizer); + void ZeroSuppress(DS::EV *ev, DS::DigitPMT *digitpmt, int pmtID); + // Calculate baseline (in mV) void CalculatePedestal(); diff --git a/src/daq/src/SplitEVDAQProc.cc b/src/daq/src/SplitEVDAQProc.cc index f7103c7b..a5da4910 100644 --- a/src/daq/src/SplitEVDAQProc.cc +++ b/src/daq/src/SplitEVDAQProc.cc @@ -29,16 +29,8 @@ SplitEVDAQProc::SplitEVDAQProc() : Processor("splitevdaq") { fTriggerOnNoise = ldaq->GetI("trigger_on_noise"); fDigitizerType = ldaq->GetS("digitizer_name"); fDigitize = ldaq->GetZ("digitize"); - fAnalyze = ldaq->GetZ("analyze"); - fAnalyzerName = ""; - try { - fAnalyzerName = ldaq->GetS("analyzer_name"); - } catch (DBNotFoundError &e) { - info << "Analyzer not specified, using default"; - } fDigitizer = new Digitizer(fDigitizerType); - fWaveformAnalysis = new WaveformAnalysis(fAnalyzerName); } void SplitEVDAQProc::BeginOfRun(DS::Run *run) { @@ -174,12 +166,6 @@ Processor::Result SplitEVDAQProc::DSEvent(DS::Root *ds) { totalEVCharge += integratedCharge; if (fDigitize) { fDigitizer->DigitizePMT(mcpmt, pmtID, tt, pmtinfo); - if (fAnalyze) { - DS::DigitPMT *digitpmt = ev->GetOrCreateDigitPMT(pmtID); - double timing_offset = - fDigitizer->fPMTWaveformGenerators[pmtinfo->GetModelNameByID(pmtID)]->fPMTPulseTimeOffset; - fWaveformAnalysis->RunAnalysis(digitpmt, pmtID, fDigitizer, timing_offset); - } } } } // Done looping over PMTs @@ -222,11 +208,4 @@ void SplitEVDAQProc::SetI(std::string param, int value) { throw ParamUnknown(param); } -void SplitEVDAQProc::SetS(std::string param, std::string value) { - if (param == "analyzer_name") - fAnalyzerName = value; - else - throw ParamUnknown(param); -} - } // namespace RAT diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index ffe8c09c..8f770810 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -94,6 +94,17 @@ void WaveformAnalysis::SetD(std::string param, double value) { } } +void WaveformAnalysis::ZeroSuppress(DS::EV* ev, DS::DigitPMT* digitpmt, int pmtID) { + if (fZeroSuppress) { + if (digitpmt->GetNCrossings() <= 0) { + size_t nerased = ev->EraseDigitPMT(pmtID); + if (nerased != 1) + warn << "WaveformAnalysis: Removed " << nerased << " digitPMTs with a single call to EraseDigitPMT. Impossible!" + << newline; + } + } +} + void WaveformAnalysis::RunAnalysis(DS::DigitPMT* digitpmt, int pmtID, Digitizer* fDigitizer, double timeOffset) { fVoltageRes = (fDigitizer->fVhigh - fDigitizer->fVlow) / (pow(2, fDigitizer->fNBits)); fTimeStep = 1.0 / fDigitizer->fSamplingRate; // in ns @@ -435,6 +446,10 @@ void WaveformAnalysis::FitWaveform() { } Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { + if (!ev->DigitizerExists()) { + warn << "Running waveform analysis, but no digitzer information." << newline; + return Processor::Result::OK; + } DS::Digit* dsdigit = &ev->GetDigitizer(); DS::Run* run = DS::RunStore::GetRun(ds->GetRunID()); const DS::ChannelStatus& ch_status = run->GetChannelStatus(); @@ -447,18 +462,11 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { DS::DigitPMT* digitpmt = ev->GetOrCreateDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); + ZeroSuppress(ev, digitpmt, pmt_id); if (digitpmt->GetNCrossings() > 0) { total_charge += digitpmt->GetDigitizedCharge(); } ev->SetTotalCharge(total_charge); - if (fZeroSuppress) { - if (digitpmt->GetNCrossings() <= 0) { - size_t nerased = ev->EraseDigitPMT(pmt_id); - if (nerased != 1) - warn << "WaveformAnalysis: Removed " << nerased - << " digitPMTs with a single call to EraseDigitPMT. Impossible!" << newline; - } - } } return Processor::Result::OK; } From 4c6372d062fdd81d8645e09619cde2d9e07d961a Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 1 Oct 2024 18:25:27 -0400 Subject: [PATCH 069/103] add nighly build CI --- .github/workflows/latest-container.yml | 39 ++++++++++++++++++++++++++ containers/Dockerfile | 6 ++-- 2 files changed, 42 insertions(+), 3 deletions(-) create mode 100644 .github/workflows/latest-container.yml diff --git a/.github/workflows/latest-container.yml b/.github/workflows/latest-container.yml new file mode 100644 index 00000000..b1bbceec --- /dev/null +++ b/.github/workflows/latest-container.yml @@ -0,0 +1,39 @@ +name: Build Docker Image + +# Run both nighly and upon new push +on: + # schedule: + # - cron: '0 4 * * *' # Everyday at 4am UTC + push: + branches: [ main ] + workflow_dispatch: + +jobs: + docker: + runs-on: ubuntu-latest + steps: + - + name: Set up Docker Buildx + uses: docker/setup-buildx-action@v3 + - + name: Login to Docker Hub + uses: docker/login-action@v3 + with: + username: ${{ secrets.DOCKERHUB_USERNAME }} + password: ${{ secrets.DOCKERHUB_TOKEN }} + + - + name: Login to GitHub Container Registry + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + - + name: Build and push + uses: docker/build-push-action@v5 + with: + file: containers/Dockerfile + push: true + tags: | + ratpac/ratpac-two:latest diff --git a/containers/Dockerfile b/containers/Dockerfile index af45f858..f5ee2182 100644 --- a/containers/Dockerfile +++ b/containers/Dockerfile @@ -1,5 +1,5 @@ -FROM ratpac/ratpac-two:base -LABEL maintainer="Morgan Askins " +FROM ratpac/ratpac-two:latest-base +LABEL maintainer="James Shen " SHELL ["/bin/bash", "-c"] @@ -7,7 +7,7 @@ USER ratuser WORKDIR /ratpac-setup -RUN ./setup.sh --only ratpac -j6 +RUN ./setup.sh --only ratpac -j$(nproc) RUN cd ratpac && cmake --install build && cd .. RUN sed -i '1s/^/#!\/bin\/bash\n/' /ratpac-setup/env.sh From 4326e57884b8f1059ac4c0801fc360cc4092de6b Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Tue, 1 Oct 2024 18:40:18 -0400 Subject: [PATCH 070/103] Add dockerbuild badge --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 5fd3064c..ec6ad992 100644 --- a/README.md +++ b/README.md @@ -5,6 +5,8 @@ [![clang-format Check](https://github.com/rat-pac/ratpac-two/actions/workflows/check-format.yml/badge.svg)](https://github.com/rat-pac/ratpac-two/actions/workflows/check-format.yml) +[![Build Docker Image](https://github.com/rat-pac/ratpac-two/actions/workflows/latest-container.yml/badge.svg?branch=main&event=deployment)](https://github.com/rat-pac/ratpac-two/actions/workflows/latest-container.yml) + [ratpac.readthedocs.io](ratpac.readthedocs.io) ## Installation Installation requires [ROOT 6.25+](https://root.cern.ch), From 69dd7a41e72acf2bf4e3931c2f0a0cf0d710755c Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Wed, 2 Oct 2024 15:22:33 -0400 Subject: [PATCH 071/103] Improve docker toolchain -- nightly builds, upload to ghcr, tagged builds (#179) --- .github/workflows/container.yml | 60 ++++++++++++++++++++++++++ .github/workflows/latest-container.yml | 39 ----------------- 2 files changed, 60 insertions(+), 39 deletions(-) create mode 100644 .github/workflows/container.yml delete mode 100644 .github/workflows/latest-container.yml diff --git a/.github/workflows/container.yml b/.github/workflows/container.yml new file mode 100644 index 00000000..9e27e1c9 --- /dev/null +++ b/.github/workflows/container.yml @@ -0,0 +1,60 @@ +name: Build Docker Image + +on: + schedule: + - cron: '0 4 * * *' # Everyday at 4am UTC + push: + branches: [ main ] + tags: + - "v*.*.*" + workflow_dispatch: + +jobs: + docker: + runs-on: ubuntu-latest + # Don't let forks build containers + if: github.repository == 'rat-pac/ratpac-two' + permissions: + packages: write + contents: read + attestations: write + id-token: write + steps: + - name: Docker meta + id: meta + uses: docker/metadata-action@v5 + with: + images: | + ratpac/ratpac-two + ghcr.io/${{ github.repository }} + # generate Docker tags based on the following events/attributes + # Using default, which should generate tags for branchs and `nightly` + # tags: | + # type=schedule + # type=ref,event=branch + # type=ref,event=workflow_dispatch + # type=semver,pattern={{raw}} + # type=sha + - + name: Login to Docker Hub + uses: docker/login-action@v3 + with: + username: ${{ secrets.DOCKERHUB_USERNAME }} + password: ${{ secrets.DOCKERHUB_TOKEN }} + + - + name: Login to GitHub Container Registry + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + - + name: Build and push + id: push + uses: docker/build-push-action@v5 + with: + file: containers/Dockerfile + push: true + tags: ${{ steps.meta.outputs.tags }} + labels: ${{ steps.meta.outputs.labels }} diff --git a/.github/workflows/latest-container.yml b/.github/workflows/latest-container.yml deleted file mode 100644 index b1bbceec..00000000 --- a/.github/workflows/latest-container.yml +++ /dev/null @@ -1,39 +0,0 @@ -name: Build Docker Image - -# Run both nighly and upon new push -on: - # schedule: - # - cron: '0 4 * * *' # Everyday at 4am UTC - push: - branches: [ main ] - workflow_dispatch: - -jobs: - docker: - runs-on: ubuntu-latest - steps: - - - name: Set up Docker Buildx - uses: docker/setup-buildx-action@v3 - - - name: Login to Docker Hub - uses: docker/login-action@v3 - with: - username: ${{ secrets.DOCKERHUB_USERNAME }} - password: ${{ secrets.DOCKERHUB_TOKEN }} - - - - name: Login to GitHub Container Registry - uses: docker/login-action@v3 - with: - registry: ghcr.io - username: ${{ github.actor }} - password: ${{ secrets.GITHUB_TOKEN }} - - - name: Build and push - uses: docker/build-push-action@v5 - with: - file: containers/Dockerfile - push: true - tags: | - ratpac/ratpac-two:latest From 21f7a0b95f1e5fd26eb2d3f01ad6d17010feed71 Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Wed, 2 Oct 2024 18:55:32 -0400 Subject: [PATCH 072/103] prevent segfault when accessing a zero-suppresed digitPMT (#181) --- src/daq/src/WaveformAnalysis.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index 8f770810..fa7b3388 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -462,10 +462,10 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { DS::DigitPMT* digitpmt = ev->GetOrCreateDigitPMT(pmt_id); double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); - ZeroSuppress(ev, digitpmt, pmt_id); if (digitpmt->GetNCrossings() > 0) { total_charge += digitpmt->GetDigitizedCharge(); } + ZeroSuppress(ev, digitpmt, pmt_id); ev->SetTotalCharge(total_charge); } return Processor::Result::OK; From 1701244f70cb532a04a778fdb0242bfd4b843a77 Mon Sep 17 00:00:00 2001 From: James Shen Date: Mon, 7 Oct 2024 15:42:38 -0400 Subject: [PATCH 073/103] throw the db error from up to its callers --- src/ds/include/RAT/DS/ChannelStatus.hh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ds/include/RAT/DS/ChannelStatus.hh b/src/ds/include/RAT/DS/ChannelStatus.hh index f93c75fc..d064b286 100644 --- a/src/ds/include/RAT/DS/ChannelStatus.hh +++ b/src/ds/include/RAT/DS/ChannelStatus.hh @@ -88,7 +88,7 @@ class ChannelStatus : public TObject { lcns.push_back(current_lcn); } } catch (DBNotFoundError& e) { - Log::Die("LCN cannot be specified!"); + throw; // upstream should hanndle this } } return lcns; From e19ca3a3d4762216fda4ac1bc09f59f742c211aa Mon Sep 17 00:00:00 2001 From: James Shen Date: Tue, 8 Oct 2024 19:15:39 -0400 Subject: [PATCH 074/103] include G4's dependency headers in case geant4 didn't build with these in the default header path --- CMakeLists.txt | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CMakeLists.txt b/CMakeLists.txt index d0b49214..527159ad 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -81,6 +81,8 @@ include(${ROOT_USE_FILE}) find_package(Geant4 REQUIRED COMPONENTS qt) include(${Geant4_USE_FILE}) include_directories(${Geant4_INCLUDE_DIRS}) +include_directories(${CLHEP_INCLUDE_DIRS}) +include_directories(${XercesC_INCLUDE_DIRS}) find_package(Threads REQUIRED) From 394f5f39f3bf1b95b6199074cb0ba331adaa5a56 Mon Sep 17 00:00:00 2001 From: hbjamin Date: Wed, 9 Oct 2024 11:54:19 -0400 Subject: [PATCH 075/103] removed trailing zeros in R7081_hqe timing PDF --- ratdb/PMTTRANSIT.ratdb | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/ratdb/PMTTRANSIT.ratdb b/ratdb/PMTTRANSIT.ratdb index f612aa58..77ba4bd2 100644 --- a/ratdb/PMTTRANSIT.ratdb +++ b/ratdb/PMTTRANSIT.ratdb @@ -131,8 +131,9 @@ index: "r7081_hqe", valid_begin : [0, 0], valid_end : [0, 0], cable_delay: 0.0, -time : [-6.1, -6.0, -5.9, -5.8, -5.7, -5.6, -5.5, -5.4, -5.3, -5.2, -5.1, -5.0, -4.9, -4.8, -4.7, -4.6, -4.5, -4.4, -4.3, -4.2, -4.1, -4.0, -3.9, -3.8, -3.7, -3.6, -3.5, -3.4, -3.3, -3.2, -3.1, -3.0, -2.9, -2.8, -2.7, -2.6, -2.5, -2.4, -2.3, -2.2, -2.1, -2.0, -1.9, -1.8, -1.7, -1.6, -1.5, -1.4, -1.3, -1.2, -1.1, -1.0, -0.9, -0.8, -0.7, -0.6, -0.5, -0.4, -0.3, -0.2, -0.1, 0.0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3.0, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 4.0, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6, 4.7, 4.8, 4.9, 5.0, 5.1, 5.2, 5.3, 5.4, 5.5, 5.6, 5.7, 5.8, 5.9, 6.0, 6.1, 6.2, 6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, 7.0, 7.1, 7.2, 7.3, 7.4, 7.5, 7.6, 7.7, 7.8, 7.9, 8.0, 8.1, 8.2, 8.3, 8.4, 8.5, 8.6, 8.7, 8.8, 8.9, 9.0, 9.1, 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8.629281615697271e-05, 8.287913055983805e-05, 6.605650865747228e-05, 7.415330999214314e-05, 7.664927475057889e-05, 6.8568225339915e-05, 5.675328487842771e-05, 3.7145996611951315e-05, 3.806371745065021e-05, 2.4381831463751205e-05, 2.110077536278805e-05, 2.2034248125493895e-05, 1.8300357074670505e-05, 1.736688431196465e-05, 1.5499938786552956e-05, 1.8300357074670505e-05, 1.3632993261141258e-05, 1.1766047735729566e-05, 1.0832574973023715e-05, 8.032156684906166e-06, 6.165211159494478e-06, 8.032156684906173e-06, 8.032156684906166e-06, 3.364792871376924e-06, 2.431320108671079e-06, 1.497847345965232e-06] + } From 5a27cab776903bbbb46c48e85f8b53e28ed73537 Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Thu, 10 Oct 2024 18:02:54 -0400 Subject: [PATCH 076/103] Channel status changes (#186) * Add default channel status assignment fields in ratdb * Add utility to get the current run information * use cable delay for timing offset * Promote the return of GetChannelStatus to a pointer --- ratdb/CHANNEL_STATUS_DEFAULTS.ratdb | 14 ++++++++++++++ src/core/src/Gsim.cc | 2 +- src/daq/include/RAT/PMTWaveformGenerator.hh | 1 - src/daq/src/PMTWaveformGenerator.cc | 6 ++++-- src/daq/src/WaveformAnalysis.cc | 6 +++--- src/ds/include/RAT/DS/ChannelStatus.hh | 14 ++++++++------ src/ds/include/RAT/DS/Run.hh | 2 +- src/ds/include/RAT/DS/RunStore.hh | 17 +++++++++++++++-- src/ds/src/RunStore.cc | 1 + src/io/src/OutNtupleProc.cc | 6 +++--- 10 files changed, 50 insertions(+), 19 deletions(-) create mode 100644 ratdb/CHANNEL_STATUS_DEFAULTS.ratdb diff --git a/ratdb/CHANNEL_STATUS_DEFAULTS.ratdb b/ratdb/CHANNEL_STATUS_DEFAULTS.ratdb new file mode 100644 index 00000000..0a0f7f86 --- /dev/null +++ b/ratdb/CHANNEL_STATUS_DEFAULTS.ratdb @@ -0,0 +1,14 @@ +// This table includes all default values set for the ChannelStatus class. Custom values should be set per-experiment. +{ + "name": "cable_offset", + "index": "", + "run_range": [0, 0], + "default_value": 60.0, +} + +{ + "name": "channel_online", + "index": "", + "run_range": [0, 0], + "default_value": 1, +} diff --git a/src/core/src/Gsim.cc b/src/core/src/Gsim.cc index ad308d0a..d77f8d42 100644 --- a/src/core/src/Gsim.cc +++ b/src/core/src/Gsim.cc @@ -179,7 +179,7 @@ void Gsim::BeginOfRunAction(const G4Run * /*aRun*/) { run = DS::RunStore::GetRun(runID); fPMTInfo = run->GetPMTInfo(); - GLG4VEventAction::GetTheHitPMTCollection()->SetChannelStatus(&run->GetChannelStatus()); + GLG4VEventAction::GetTheHitPMTCollection()->SetChannelStatus(run->GetChannelStatus()); for (size_t i = 0; i < fPMTTime.size(); i++) { delete fPMTTime[i]; diff --git a/src/daq/include/RAT/PMTWaveformGenerator.hh b/src/daq/include/RAT/PMTWaveformGenerator.hh index dd138905..9441b5f0 100644 --- a/src/daq/include/RAT/PMTWaveformGenerator.hh +++ b/src/daq/include/RAT/PMTWaveformGenerator.hh @@ -28,7 +28,6 @@ class PMTWaveformGenerator { // Universal pulse parameters double fPMTPulseMin; double fPMTPulseOffset; - double fPMTPulseTimeOffset; double fTerminationOhms; bool fPMTPulsePolarity; // negative is true, positive is false diff --git a/src/daq/src/PMTWaveformGenerator.cc b/src/daq/src/PMTWaveformGenerator.cc index 73c476c7..a43a9660 100644 --- a/src/daq/src/PMTWaveformGenerator.cc +++ b/src/daq/src/PMTWaveformGenerator.cc @@ -1,3 +1,4 @@ +#include #include #include #include @@ -44,7 +45,6 @@ PMTWaveformGenerator::PMTWaveformGenerator(std::string modelName) { fPMTPulseOffset = lpulse->GetD("pulse_offset"); fPMTPulseMin = lpulse->GetD("pulse_min"); - fPMTPulseTimeOffset = lpulse->GetD("pulse_time_offset"); fTerminationOhms = lpulse->GetD("termination_ohms"); fPMTPulsePolarity = lpulse->GetZ("pulse_polarity_negative"); @@ -107,15 +107,17 @@ PMTWaveform PMTWaveformGenerator::GenerateWaveforms(DS::MCPMT *mcpmt, double tri PMTWaveform pmtwf; // Loop over PEs and create a pulse for each one + for (int iph = 0; iph < mcpmt->GetMCPhotonCount(); iph++) { DS::MCPhoton *mcpe = mcpmt->GetMCPhoton(iph); + double time_offset = DS::RunStore::GetCurrentRun()->GetChannelStatus()->GetCableOffsetByPMTID(mcpmt->GetID()); pmtwf.fPulse.push_back(PMTPulse(fPMTPulseType, fPMTPulseShape)); PMTPulse *pmtpulse = &pmtwf.fPulse.back(); pmtpulse->SetPulseCharge(mcpe->GetCharge() * fTerminationOhms); pmtpulse->SetPulseMin(fPMTPulseMin); pmtpulse->SetPulseOffset(fPMTPulseOffset); - pmtpulse->SetPulseTimeOffset(fPMTPulseTimeOffset); + pmtpulse->SetPulseTimeOffset(time_offset); pmtpulse->SetPulseStartTime(mcpe->GetFrontEndTime() - triggerTime); pmtpulse->SetPulsePolarity(fPMTPulsePolarity); diff --git a/src/daq/src/WaveformAnalysis.cc b/src/daq/src/WaveformAnalysis.cc index fa7b3388..152ceff9 100644 --- a/src/daq/src/WaveformAnalysis.cc +++ b/src/daq/src/WaveformAnalysis.cc @@ -452,15 +452,15 @@ Processor::Result WaveformAnalysis::Event(DS::Root* ds, DS::EV* ev) { } DS::Digit* dsdigit = &ev->GetDigitizer(); DS::Run* run = DS::RunStore::GetRun(ds->GetRunID()); - const DS::ChannelStatus& ch_status = run->GetChannelStatus(); + const DS::ChannelStatus* ch_status = run->GetChannelStatus(); std::vector pmt_ids = dsdigit->GetIDs(); double total_charge = 0; for (int pmt_id : pmt_ids) { // Do not analyze negative pmtid channels, since they do not correspond to real PMTs. if (pmt_id < 0) continue; - if (!ch_status.GetOnlineByPMTID(pmt_id)) continue; + if (!ch_status->GetOnlineByPMTID(pmt_id)) continue; DS::DigitPMT* digitpmt = ev->GetOrCreateDigitPMT(pmt_id); - double time_offset = fApplyCableOffset ? ch_status.GetCableOffsetByPMTID(pmt_id) : 0.0; + double time_offset = fApplyCableOffset ? ch_status->GetCableOffsetByPMTID(pmt_id) : 0.0; RunAnalysis(digitpmt, pmt_id, dsdigit, time_offset); if (digitpmt->GetNCrossings() > 0) { total_charge += digitpmt->GetDigitizedCharge(); diff --git a/src/ds/include/RAT/DS/ChannelStatus.hh b/src/ds/include/RAT/DS/ChannelStatus.hh index d064b286..16f46dd6 100644 --- a/src/ds/include/RAT/DS/ChannelStatus.hh +++ b/src/ds/include/RAT/DS/ChannelStatus.hh @@ -42,6 +42,7 @@ class ChannelStatus : public TObject { virtual double GetCableOffsetByPMTID(int pmtid) const { return cable_offset.at(pmtid_to_index.at(pmtid)); } virtual void LinkPMT(int pmtid, int lcn) { + // create entry with default values if none are specified if (lcn_to_index.find(lcn) == lcn_to_index.end()) { AddChannel(lcn, default_is_online, default_offset); } @@ -49,13 +50,16 @@ class ChannelStatus : public TObject { } virtual void Load(const PMTInfo* pmtinfo, const std::string index = "") { + DBLinkPtr lCableOffset = DB::Get()->GetLink("cable_offset", index); + default_offset = lCableOffset->GetD("default_value"); + DBLinkPtr lChannelOnline = DB::Get()->GetLink("channel_online", index); + default_is_online = lChannelOnline->GetD("default_value"); for (int pmtid = 0; pmtid < pmtinfo->GetPMTCount(); pmtid++) { int lcn = pmtinfo->GetChannelNumber(pmtid); LinkPMT(pmtid, lcn); } // cable offset try { - DBLinkPtr lCableOffset = DB::Get()->GetLink("cable_offset", index); std::vector lcns = get_lcns(lCableOffset); std::vector values = lCableOffset->GetDArray("value"); insert_values(lcns, values, &cable_offset); @@ -64,7 +68,6 @@ class ChannelStatus : public TObject { } // dead channels try { - DBLinkPtr lChannelOnline = DB::Get()->GetLink("channel_online", index); std::vector lcns = get_lcns(lChannelOnline); std::vector values = lChannelOnline->GetIArray("value"); insert_values(lcns, values, &online); @@ -108,10 +111,7 @@ class ChannelStatus : public TObject { } } - static inline const double default_offset = 0.0; - static inline const int default_is_online = 1; - - ClassDef(ChannelStatus, 1); + ClassDef(ChannelStatus, 2); protected: std::map lcn_to_index; @@ -119,6 +119,8 @@ class ChannelStatus : public TObject { std::vector lcns; std::vector online; std::vector cable_offset; + double default_offset; + int default_is_online; }; } // namespace DS diff --git a/src/ds/include/RAT/DS/Run.hh b/src/ds/include/RAT/DS/Run.hh index 605656b1..170d6430 100644 --- a/src/ds/include/RAT/DS/Run.hh +++ b/src/ds/include/RAT/DS/Run.hh @@ -52,7 +52,7 @@ class Run : public TObject { virtual void PrunePMTInfo() { pmtinfo.resize(0); } /** Channel status */ - virtual ChannelStatus const &GetChannelStatus() const { return ch_status; } + virtual ChannelStatus const *GetChannelStatus() const { return &ch_status; } virtual void SetChannelStatus(const ChannelStatus &_ch_status) { ch_status = _ch_status; } ClassDef(Run, 3); diff --git a/src/ds/include/RAT/DS/RunStore.hh b/src/ds/include/RAT/DS/RunStore.hh index 3a1ed22a..e6b1cc50 100644 --- a/src/ds/include/RAT/DS/RunStore.hh +++ b/src/ds/include/RAT/DS/RunStore.hh @@ -111,6 +111,15 @@ class RunStore { */ inline static Run *GetRun(int runID) { return Get()->InstanceGetRun(runID); } + /** + * Get the run object that is associated with the current. + * + * The current runID whe a new run is added to the RunStore. Hence This + * method assumes that the "current run" is the one most recently + * instantiated. + * */ + inline static Run *GetCurrentRun() { return Get()->InstanceGetRun(currentRunID); } + /** * Sets the TTree from which Run records can be read. * @@ -161,7 +170,10 @@ class RunStore { * when FlushWriteTree() is called. * */ - inline static void AddNewRun(Run *run) { Get()->InstanceAddNewRun(run); } + inline static void AddNewRun(Run *run) { + currentRunID = run->GetID(); + Get()->InstanceAddNewRun(run); + } /** Preloads the cache from a run tree. * @@ -179,6 +191,7 @@ class RunStore { protected: static RunStore *fgStore; + static int currentRunID; public: /** You probably want the static interface above. */ @@ -193,7 +206,7 @@ class RunStore { void InstanceAddNewRun(Run *run); void InstancePreloadFromTree(TTree *tree, bool writtenToDisk = false); - ClassDef(RunStore, 1); + ClassDef(RunStore, 2); protected: TTree *fReadTree; diff --git a/src/ds/src/RunStore.cc b/src/ds/src/RunStore.cc index 0cb2c498..460a64bc 100644 --- a/src/ds/src/RunStore.cc +++ b/src/ds/src/RunStore.cc @@ -6,6 +6,7 @@ namespace RAT { namespace DS { RunStore *RunStore::fgStore = 0; +int RunStore::currentRunID = -9999; RunStore::RunStore() : fReadTree(0), fWriteTree(0) { fReadRun = new Run(); diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 98ce85af..78c6f21d 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -516,7 +516,7 @@ OutNtupleProc::~OutNtupleProc() { outputFile->cd(); DS::PMTInfo *pmtinfo = runBranch->GetPMTInfo(); - const DS::ChannelStatus &ch_status = runBranch->GetChannelStatus(); + const DS::ChannelStatus *ch_status = runBranch->GetChannelStatus(); for (int id = 0; id < pmtinfo->GetPMTCount(); id++) { int type = pmtinfo->GetType(id); int channel = pmtinfo->GetChannelNumber(id); @@ -525,8 +525,8 @@ OutNtupleProc::~OutNtupleProc() { pmtType.push_back(type); pmtId.push_back(id); pmtChannel.push_back(channel); - pmtIsOnline.push_back(ch_status.GetOnlineByPMTID(id)); - pmtCableOffset.push_back(ch_status.GetCableOffsetByPMTID(id)); + pmtIsOnline.push_back(ch_status->GetOnlineByPMTID(id)); + pmtCableOffset.push_back(ch_status->GetCableOffsetByPMTID(id)); pmtX.push_back(position.X()); pmtY.push_back(position.Y()); pmtZ.push_back(position.Z()); From 724382b2ee63a03e65a88760cbcf01df4dd1e29e Mon Sep 17 00:00:00 2001 From: Logan Lebanowski Date: Fri, 11 Oct 2024 12:21:43 -0400 Subject: [PATCH 077/103] Add two UVA acrylics --- ratdb/MATERIALS.ratdb | 24 ++++++++++++++++++++++++ ratdb/OPTICS.ratdb | 32 ++++++++++++++++++++++++++++++++ 2 files changed, 56 insertions(+) diff --git a/ratdb/MATERIALS.ratdb b/ratdb/MATERIALS.ratdb index 34c469a5..4d3f2398 100644 --- a/ratdb/MATERIALS.ratdb +++ b/ratdb/MATERIALS.ratdb @@ -848,6 +848,30 @@ elements: ["Hydrogen", "Carbon", "Oxygen"], elemprop: [0.0703, 0.558, 0.3717], } +{ +name: "MATERIAL", +index: "acrylic_uva_polycast", +valid_begin : [0, 0], +valid_end : [0, 0], +density: 1.14, +nelements: 3, +nmaterials: 0, +elements: ["Hydrogen", "Carbon", "Oxygen"], +elemprop: [0.0703, 0.558, 0.3717], +} + +{ +name: "MATERIAL", +index: "acrylic_uva_reynolds", +valid_begin : [0, 0], +valid_end : [0, 0], +density: 1.14, +nelements: 3, +nmaterials: 0, +elements: ["Hydrogen", "Carbon", "Oxygen"], +elemprop: [0.0703, 0.558, 0.3717], +} + { name: "MATERIAL", index: "nylon", diff --git a/ratdb/OPTICS.ratdb b/ratdb/OPTICS.ratdb index 90b98eed..9a8bca64 100644 --- a/ratdb/OPTICS.ratdb +++ b/ratdb/OPTICS.ratdb @@ -713,6 +713,38 @@ ABSLENGTH_value2: [1e-3, 1e-3, 1.8, 28.2, 196.2, 529.2, 5865.2, 9000.0, PROPERTY_LIST: ["RINDEX", "ABSLENGTH", ] } +{ +name: "OPTICS", +index: "acrylic_uva_polycast", +valid_begin : [0, 0], +valid_end : [0, 0], +// Copied from polycast values +RINDEX_option: "wavelength", +RINDEX_value1: [60.0, 200.0, 210.0, 220.0, 230.0, 240.0, 250.0, 260.0, 270.0, 280.0, 290.0, 300.0, 310.0, 320.0, 330.0, 340.0, 350.0, 360.0, 370.0, 380.0, 390.0, 400.0, 410.0, 420.0, 430.0, 440.0, 450.0, 460.0, 470.0, 480.0, 490.0, 500.0, 510.0, 520.0, 530.0, 540.0, 550.0, 560.0, 570.0, 580.0, 590.0, 600.0, 610.0, 620.0, 630.0, 640.0, 650.0, 660.0, 670.0, 680.0, 690.0, 700.0, 710.0, 720.0, 730.0, 740.0, 750.0, 760.0, 770.0, 780.0, 790.0, 800.0, ], +RINDEX_value2: [1.597, 1.597, 1.584, 1.573, 1.564, 1.556, 1.550, 1.544, 1.539, 1.534, 1.531, 1.527, 1.524, 1.521, 1.519, 1.516, 1.514, 1.512, 1.510, 1.509, 1.507, 1.506, 1.505, 1.503, 1.502, 1.501, 1.500, 1.499, 1.499, 1.498, 1.497, 1.496, 1.496, 1.495, 1.494, 1.494, 1.493, 1.493, 1.492, 1.492, 1.491, 1.491, 1.490, 1.490, 1.490, 1.489, 1.489, 1.488, 1.488, 1.488, 1.488, 1.487, 1.487, 1.487, 1.486, 1.486, 1.486, 1.486, 1.485, 1.485, 1.485, 1.485, ], +// Extracted from transmission curve from Polycast and linearly extrapolated beyond 350 nm & 700 nm. +ABSLENGTH_option: "wavelength", +ABSLENGTH_value1: [60.000, 341.307, 349.856, 369.884, 373.312, 376.592, 379.235, 380.368, 381.203, 381.918, 382.574, 383.528, 384.065, 384.542, 385.138, 386.811, 387.467, 388.242, 389.076, 389.792, 392.137, 394.164, 397.861, 401.320, 404.480, 411.875, 424.697, 449.106, 493.893, 555.720, 642.818, 699.631, 1000.000, ], +ABSLENGTH_value2: [0.0000, 0.0000, 0.2648, 0.6122, 0.7870, 1.0730, 1.4827, 1.7485, 1.9970, 2.2560, 2.5394, 3.0489, 3.3968, 3.7494, 4.2551, 6.1346, 7.0848, 8.3733, 9.9540, 11.4533, 15.9888, 20.1353, 24.7087, 29.2163, 32.3249, 32.7342, 32.9815, 33.4522, 34.3159, 35.5081, 37.1877, 38.2833, 44.0757, ], +PROPERTY_LIST: ["RINDEX", "ABSLENGTH", ] +} + +{ +name: "OPTICS", +index: "acrylic_uva_reynolds", +valid_begin : [0, 0], +valid_end : [0, 0], +// Copied from polycast values +RINDEX_option: "wavelength", +RINDEX_value1: [60.0, 200.0, 210.0, 220.0, 230.0, 240.0, 250.0, 260.0, 270.0, 280.0, 290.0, 300.0, 310.0, 320.0, 330.0, 340.0, 350.0, 360.0, 370.0, 380.0, 390.0, 400.0, 410.0, 420.0, 430.0, 440.0, 450.0, 460.0, 470.0, 480.0, 490.0, 500.0, 510.0, 520.0, 530.0, 540.0, 550.0, 560.0, 570.0, 580.0, 590.0, 600.0, 610.0, 620.0, 630.0, 640.0, 650.0, 660.0, 670.0, 680.0, 690.0, 700.0, 710.0, 720.0, 730.0, 740.0, 750.0, 760.0, 770.0, 780.0, 790.0, 800.0, ], +RINDEX_value2: [1.597, 1.597, 1.584, 1.573, 1.564, 1.556, 1.550, 1.544, 1.539, 1.534, 1.531, 1.527, 1.524, 1.521, 1.519, 1.516, 1.514, 1.512, 1.510, 1.509, 1.507, 1.506, 1.505, 1.503, 1.502, 1.501, 1.500, 1.499, 1.499, 1.498, 1.497, 1.496, 1.496, 1.495, 1.494, 1.494, 1.493, 1.493, 1.492, 1.492, 1.491, 1.491, 1.490, 1.490, 1.490, 1.489, 1.489, 1.488, 1.488, 1.488, 1.488, 1.487, 1.487, 1.487, 1.486, 1.486, 1.486, 1.486, 1.485, 1.485, 1.485, 1.485, ], +// Extrapolated & extracted from 5 transmission points from Reynolds. Trend above 423 nm scaled from acrylic_uva_polycast. +ABSLENGTH_option: "wavelength", +ABSLENGTH_value1: [60.000, 328.788, 360.000, 370.000, 380.000, 390.000, 395.000, 400.000, 405.000, 410.000, 415.000, 420.000, 422.000, 423.000, 423.483, 1000.000, ], +ABSLENGTH_value2: [0.0000, 0.0000, 4.0861, 5.3953, 7.9106, 14.2378, 21.8303, 37.5420, 70.3784, 130.8701, 214.4315, 292.0230, 315.4331, 325.2660, 329.5845, 440.7566, ], +PROPERTY_LIST: ["RINDEX", "ABSLENGTH", ] +} + { name: "OPTICS", index: "delrin_black", // identical to acrylic_black From bfeceffd7df70043544a6327b89f7ea2936b2f61 Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Sat, 12 Oct 2024 16:49:53 -0400 Subject: [PATCH 078/103] Allow run plane to fall back to default plane when an entry is not found (#189) --- src/db/include/RAT/DBLink.hh | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/src/db/include/RAT/DBLink.hh b/src/db/include/RAT/DBLink.hh index 299c7af5..1cb1c077 100644 --- a/src/db/include/RAT/DBLink.hh +++ b/src/db/include/RAT/DBLink.hh @@ -177,18 +177,16 @@ T DBLink::Get(const std::string &fieldname) { DBTable *tbl; // First try user plane tbl = db->GetUserTable(tblname, index); + // Then try the run plane if (!tbl || tbl->GetFieldType(fieldname) == DBTable::NOTFOUND) { - // Then try the run plane tbl = db->GetRunTable(tblname, index, currentRun); - if (tbl) { - if (tbl->GetFieldType(fieldname) == DBTable::NOTFOUND) throw DBNotFoundError(tblname, index, fieldname); - } else { - // Finally try default plane - tbl = db->GetDefaultTable(tblname, index); - if (!tbl || tbl->GetFieldType(fieldname) == DBTable::NOTFOUND) { - throw DBNotFoundError(tblname, index, fieldname); - } - } + } + // Then try the default plane + if (!tbl || tbl->GetFieldType(fieldname) == DBTable::NOTFOUND) { + tbl = db->GetDefaultTable(tblname, index); + } + if (!tbl || tbl->GetFieldType(fieldname) == DBTable::NOTFOUND) { + throw DBNotFoundError(tblname, index, fieldname); } // Make class explicit to satisfy Sun CC 5.3 From f00b8f18fb5313f9fa8071439fe0aba338677436 Mon Sep 17 00:00:00 2001 From: James Shen Date: Mon, 14 Oct 2024 17:27:17 -0400 Subject: [PATCH 079/103] Make the qt component of G4 optional --- CMakeLists.txt | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 527159ad..62b5fc55 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -78,7 +78,8 @@ else() endif() include(${ROOT_USE_FILE}) -find_package(Geant4 REQUIRED COMPONENTS qt) +find_package(Geant4 REQUIRED) +find_package(Geant4 QUIET OPTIONAL_COMPONENTS qt) include(${Geant4_USE_FILE}) include_directories(${Geant4_INCLUDE_DIRS}) include_directories(${CLHEP_INCLUDE_DIRS}) From 45a3bef42e0f08636954f3a9c70a8ef61d59d0b6 Mon Sep 17 00:00:00 2001 From: James Shen Date: Mon, 14 Oct 2024 17:28:03 -0400 Subject: [PATCH 080/103] explicitly use std namespace due to compiler complaints --- src/fit/src/FitTensorProc.cc | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/fit/src/FitTensorProc.cc b/src/fit/src/FitTensorProc.cc index 128a90d2..8112ac34 100644 --- a/src/fit/src/FitTensorProc.cc +++ b/src/fit/src/FitTensorProc.cc @@ -83,11 +83,11 @@ cppflow::tensor FitTensorProc::CreateProjection(DS::EV *ev, DS::PMTInfo *pmtinfo for (int i = 0; i < xdim; i++) { for (int j = 0; j < ydim; j++) { float red_value = red[i][j]; - red_value = isnan(red_value) ? 0 : red_value; + red_value = std::isnan(red_value) ? 0 : red_value; // info << red_value << newline; flatArray.push_back(std::min(std::max(static_cast(0.0), red_value), static_cast(1.0))); float green_value = green[i][j]; - green_value = isnan(green_value) ? 0 : green_value; + green_value = std::isnan(green_value) ? 0 : green_value; flatArray.push_back(std::min(std::max(static_cast(0.0), green_value), static_cast(1.0))); } } From 10e832e976bd0084bdfdc14d5086b63f7d4a199e Mon Sep 17 00:00:00 2001 From: James Shen <46590537+JamesJieranShen@users.noreply.github.com> Date: Fri, 25 Oct 2024 20:02:19 -0400 Subject: [PATCH 081/103] update time_since_last_trigger to write correct unit (#193) --- src/io/src/OutNtupleProc.cc | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/io/src/OutNtupleProc.cc b/src/io/src/OutNtupleProc.cc index 78c6f21d..e0cbcaaa 100644 --- a/src/io/src/OutNtupleProc.cc +++ b/src/io/src/OutNtupleProc.cc @@ -363,7 +363,7 @@ Processor::Result OutNtupleProc::DSEvent(DS::Root *ds) { triggerTime = ev->GetCalibratedTriggerTime(); timestamp = (ev->GetUTC().GetSec() - runBranch->GetStartTime().GetSec()) * 1e9 + (ev->GetUTC().GetNanoSec() - runBranch->GetStartTime().GetNanoSec()) + triggerTime; - timeSinceLastTrigger_us = ev->GetDeltaT(); + timeSinceLastTrigger_us = ev->GetDeltaT() / 1000.; auto fitVector = ev->GetFitResults(); std::map fitvalues; std::map fitvalids; From ede497188cad2fda37fbdb6c376e10a84104882a Mon Sep 17 00:00:00 2001 From: James Shen Date: Wed, 30 Oct 2024 18:02:51 -0400 Subject: [PATCH 082/103] Use git-rev-parse to add the precommit hook to the right place, even when someone is using worktrees --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index c4e42c8e..2685a82e 100644 --- a/Makefile +++ b/Makefile @@ -4,7 +4,7 @@ build_directory := build install_directory := $(PWD)/install all: - ln -sf ../../cformat.sh ./.git/hooks/pre-commit + ln -sf ../../cformat.sh $(shell git rev-parse --git-common-dir)/hooks/pre-commit cmake . -B$(build_directory) -DCMAKE_INSTALL_PREFIX=$(install_directory) cmake --build $(build_directory) -- $(MAKEFLAGS) cmake --install $(build_directory) &> /dev/null From fa2c664c15dfd0384fa5302093fa2b3133a452e5 Mon Sep 17 00:00:00 2001 From: James Shen Date: Thu, 31 Oct 2024 02:29:16 -0400 Subject: [PATCH 083/103] Add doxygen reference generation --- .gitignore | 1 + doc/Doxyfile | 2658 ++++++++++++++++++++++++++++++++++++++++++ doc/conf.py | 3 + doc/doxy_index.md | 14 + doc/index.rst | 1 + doc/requirements.txt | 1 + 6 files changed, 2678 insertions(+) create mode 100644 doc/Doxyfile create mode 100644 doc/doxy_index.md diff --git a/.gitignore b/.gitignore index 35824559..7f4aad08 100644 --- a/.gitignore +++ b/.gitignore @@ -29,6 +29,7 @@ src/core/Config.hh .idea/ .vscode/ doc/_build/ +doc/doxygen .pytest_cache* ratpac.*sh RatpacConfig.cmake diff --git a/doc/Doxyfile b/doc/Doxyfile new file mode 100644 index 00000000..8a2f7639 --- /dev/null +++ b/doc/Doxyfile @@ -0,0 +1,2658 @@ +# Doxyfile 1.9.1 + +# This file describes the settings to be used by the documentation system +# doxygen (www.doxygen.org) for a project. +# +# All text after a double hash (##) is considered a comment and is placed in +# front of the TAG it is preceding. +# +# All text after a single hash (#) is considered a comment and will be ignored. +# The format is: +# TAG = value [value, ...] +# For lists, items can also be appended using: +# TAG += value [value, ...] +# Values that contain spaces should be placed between quotes (\" \"). + +#--------------------------------------------------------------------------- +# Project related configuration options +#--------------------------------------------------------------------------- + +# This tag specifies the encoding used for all characters in the configuration +# file that follow. The default is UTF-8 which is also the encoding used for all +# text before the first occurrence of this tag. Doxygen uses libiconv (or the +# iconv built into libc) for the transcoding. See +# https://www.gnu.org/software/libiconv/ for the list of possible encodings. +# The default value is: UTF-8. + +DOXYFILE_ENCODING = UTF-8 + +# The PROJECT_NAME tag is a single word (or a sequence of words surrounded by +# double-quotes, unless you are using Doxywizard) that should identify the +# project for which the documentation is generated. This name is used in the +# title of most generated pages and in a few other places. +# The default value is: My Project. + +PROJECT_NAME = "Ratpac-two" + +# The PROJECT_NUMBER tag can be used to enter a project or revision number. This +# could be handy for archiving the generated documentation or if some version +# control system is used. + +PROJECT_NUMBER = + +# Using the PROJECT_BRIEF tag one can provide an optional one line description +# for a project that appears at the top of each page and should give viewer a +# quick idea about the purpose of the project. Keep the description short. + +PROJECT_BRIEF = + +# With the PROJECT_LOGO tag one can specify a logo or an icon that is included +# in the documentation. The maximum height of the logo should not exceed 55 +# pixels and the maximum width should not exceed 200 pixels. Doxygen will copy +# the logo to the output directory. + +PROJECT_LOGO = + +# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path +# into which the generated documentation will be written. If a relative path is +# entered, it will be relative to the location where doxygen was started. If +# left blank the current directory will be used. + +OUTPUT_DIRECTORY = "./doxygen/" + +# If the CREATE_SUBDIRS tag is set to YES then doxygen will create 4096 sub- +# directories (in 2 levels) under the output directory of each output format and +# will distribute the generated files over these directories. Enabling this +# option can be useful when feeding doxygen a huge amount of source files, where +# putting all generated files in the same directory would otherwise causes +# performance problems for the file system. +# The default value is: NO. + +CREATE_SUBDIRS = NO + +# If the ALLOW_UNICODE_NAMES tag is set to YES, doxygen will allow non-ASCII +# characters to appear in the names of generated files. If set to NO, non-ASCII +# characters will be escaped, for example _xE3_x81_x84 will be used for Unicode +# U+3044. +# The default value is: NO. + +ALLOW_UNICODE_NAMES = NO + +# The OUTPUT_LANGUAGE tag is used to specify the language in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all constant output in the proper language. +# Possible values are: Afrikaans, Arabic, Armenian, Brazilian, Catalan, Chinese, +# Chinese-Traditional, Croatian, Czech, Danish, Dutch, English (United States), +# Esperanto, Farsi (Persian), Finnish, French, German, Greek, Hungarian, +# Indonesian, Italian, Japanese, Japanese-en (Japanese with English messages), +# Korean, Korean-en (Korean with English messages), Latvian, Lithuanian, +# Macedonian, Norwegian, Persian (Farsi), Polish, Portuguese, Romanian, Russian, +# Serbian, Serbian-Cyrillic, Slovak, Slovene, Spanish, Swedish, Turkish, +# Ukrainian and Vietnamese. +# The default value is: English. + +OUTPUT_LANGUAGE = English + +# The OUTPUT_TEXT_DIRECTION tag is used to specify the direction in which all +# documentation generated by doxygen is written. Doxygen will use this +# information to generate all generated output in the proper direction. +# Possible values are: None, LTR, RTL and Context. +# The default value is: None. + +OUTPUT_TEXT_DIRECTION = None + +# If the BRIEF_MEMBER_DESC tag is set to YES, doxygen will include brief member +# descriptions after the members that are listed in the file and class +# documentation (similar to Javadoc). Set to NO to disable this. +# The default value is: YES. + +BRIEF_MEMBER_DESC = YES + +# If the REPEAT_BRIEF tag is set to YES, doxygen will prepend the brief +# description of a member or function before the detailed description +# +# Note: If both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the +# brief descriptions will be completely suppressed. +# The default value is: YES. + +REPEAT_BRIEF = YES + +# This tag implements a quasi-intelligent brief description abbreviator that is +# used to form the text in various listings. Each string in this list, if found +# as the leading text of the brief description, will be stripped from the text +# and the result, after processing the whole list, is used as the annotated +# text. Otherwise, the brief description is used as-is. If left blank, the +# following values are used ($name is automatically replaced with the name of +# the entity):The $name class, The $name widget, The $name file, is, provides, +# specifies, contains, represents, a, an and the. + +ABBREVIATE_BRIEF = "The $name class" \ + "The $name widget" \ + "The $name file" \ + is \ + provides \ + specifies \ + contains \ + represents \ + a \ + an \ + the + +# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then +# doxygen will generate a detailed section even if there is only a brief +# description. +# The default value is: NO. + +ALWAYS_DETAILED_SEC = NO + +# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all +# inherited members of a class in the documentation of that class as if those +# members were ordinary class members. Constructors, destructors and assignment +# operators of the base classes will not be shown. +# The default value is: NO. + +INLINE_INHERITED_MEMB = NO + +# If the FULL_PATH_NAMES tag is set to YES, doxygen will prepend the full path +# before files name in the file list and in the header files. If set to NO the +# shortest path that makes the file name unique will be used +# The default value is: YES. + +FULL_PATH_NAMES = YES + +# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path. +# Stripping is only done if one of the specified strings matches the left-hand +# part of the path. The tag can be used to show relative paths in the file list. +# If left blank the directory from which doxygen is run is used as the path to +# strip. +# +# Note that you can specify absolute paths here, but also relative paths, which +# will be relative from the directory where doxygen is started. +# This tag requires that the tag FULL_PATH_NAMES is set to YES. + +STRIP_FROM_PATH = + +# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the +# path mentioned in the documentation of a class, which tells the reader which +# header file to include in order to use a class. If left blank only the name of +# the header file containing the class definition is used. Otherwise one should +# specify the list of include paths that are normally passed to the compiler +# using the -I flag. + +STRIP_FROM_INC_PATH = + +# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter (but +# less readable) file names. This can be useful is your file systems doesn't +# support long names like on DOS, Mac, or CD-ROM. +# The default value is: NO. + +SHORT_NAMES = NO + +# If the JAVADOC_AUTOBRIEF tag is set to YES then doxygen will interpret the +# first line (until the first dot) of a Javadoc-style comment as the brief +# description. If set to NO, the Javadoc-style will behave just like regular Qt- +# style comments (thus requiring an explicit @brief command for a brief +# description.) +# The default value is: NO. + +JAVADOC_AUTOBRIEF = NO + +# If the JAVADOC_BANNER tag is set to YES then doxygen will interpret a line +# such as +# /*************** +# as being the beginning of a Javadoc-style comment "banner". If set to NO, the +# Javadoc-style will behave just like regular comments and it will not be +# interpreted by doxygen. +# The default value is: NO. + +JAVADOC_BANNER = NO + +# If the QT_AUTOBRIEF tag is set to YES then doxygen will interpret the first +# line (until the first dot) of a Qt-style comment as the brief description. If +# set to NO, the Qt-style will behave just like regular Qt-style comments (thus +# requiring an explicit \brief command for a brief description.) +# The default value is: NO. + +QT_AUTOBRIEF = NO + +# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make doxygen treat a +# multi-line C++ special comment block (i.e. a block of //! or /// comments) as +# a brief description. This used to be the default behavior. The new default is +# to treat a multi-line C++ comment block as a detailed description. Set this +# tag to YES if you prefer the old behavior instead. +# +# Note that setting this tag to YES also means that rational rose comments are +# not recognized any more. +# The default value is: NO. + +MULTILINE_CPP_IS_BRIEF = NO + +# By default Python docstrings are displayed as preformatted text and doxygen's +# special commands cannot be used. By setting PYTHON_DOCSTRING to NO the +# doxygen's special commands can be used and the contents of the docstring +# documentation blocks is shown as doxygen documentation. +# The default value is: YES. + +PYTHON_DOCSTRING = YES + +# If the INHERIT_DOCS tag is set to YES then an undocumented member inherits the +# documentation from any documented member that it re-implements. +# The default value is: YES. + +INHERIT_DOCS = YES + +# If the SEPARATE_MEMBER_PAGES tag is set to YES then doxygen will produce a new +# page for each member. If set to NO, the documentation of a member will be part +# of the file/class/namespace that contains it. +# The default value is: NO. + +SEPARATE_MEMBER_PAGES = NO + +# The TAB_SIZE tag can be used to set the number of spaces in a tab. Doxygen +# uses this value to replace tabs by spaces in code fragments. +# Minimum value: 1, maximum value: 16, default value: 4. + +TAB_SIZE = 4 + +# This tag can be used to specify a number of aliases that act as commands in +# the documentation. An alias has the form: +# name=value +# For example adding +# "sideeffect=@par Side Effects:\n" +# will allow you to put the command \sideeffect (or @sideeffect) in the +# documentation, which will result in a user-defined paragraph with heading +# "Side Effects:". You can put \n's in the value part of an alias to insert +# newlines (in the resulting output). You can put ^^ in the value part of an +# alias to insert a newline as if a physical newline was in the original file. +# When you need a literal { or } or , in the value part of an alias you have to +# escape them by means of a backslash (\), this can lead to conflicts with the +# commands \{ and \} for these it is advised to use the version @{ and @} or use +# a double escape (\\{ and \\}) + +ALIASES = + +# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C sources +# only. Doxygen will then generate output that is more tailored for C. For +# instance, some of the names that are used will be different. The list of all +# members will be omitted, etc. +# The default value is: NO. + +OPTIMIZE_OUTPUT_FOR_C = NO + +# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java or +# Python sources only. Doxygen will then generate output that is more tailored +# for that language. For instance, namespaces will be presented as packages, +# qualified scopes will look different, etc. +# The default value is: NO. + +OPTIMIZE_OUTPUT_JAVA = NO + +# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran +# sources. Doxygen will then generate output that is tailored for Fortran. +# The default value is: NO. + +OPTIMIZE_FOR_FORTRAN = NO + +# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL +# sources. Doxygen will then generate output that is tailored for VHDL. +# The default value is: NO. + +OPTIMIZE_OUTPUT_VHDL = NO + +# Set the OPTIMIZE_OUTPUT_SLICE tag to YES if your project consists of Slice +# sources only. Doxygen will then generate output that is more tailored for that +# language. For instance, namespaces will be presented as modules, types will be +# separated into more groups, etc. +# The default value is: NO. + +OPTIMIZE_OUTPUT_SLICE = NO + +# Doxygen selects the parser to use depending on the extension of the files it +# parses. With this tag you can assign which parser to use for a given +# extension. Doxygen has a built-in mapping, but you can override or extend it +# using this tag. The format is ext=language, where ext is a file extension, and +# language is one of the parsers supported by doxygen: IDL, Java, JavaScript, +# Csharp (C#), C, C++, D, PHP, md (Markdown), Objective-C, Python, Slice, VHDL, +# Fortran (fixed format Fortran: FortranFixed, free formatted Fortran: +# FortranFree, unknown formatted Fortran: Fortran. In the later case the parser +# tries to guess whether the code is fixed or free formatted code, this is the +# default for Fortran type files). For instance to make doxygen treat .inc files +# as Fortran files (default is PHP), and .f files as C (default is Fortran), +# use: inc=Fortran f=C. +# +# Note: For files without extension you can use no_extension as a placeholder. +# +# Note that for custom extensions you also need to set FILE_PATTERNS otherwise +# the files are not read by doxygen. When specifying no_extension you should add +# * to the FILE_PATTERNS. +# +# Note see also the list of default file extension mappings. + +EXTENSION_MAPPING = + +# If the MARKDOWN_SUPPORT tag is enabled then doxygen pre-processes all comments +# according to the Markdown format, which allows for more readable +# documentation. See https://daringfireball.net/projects/markdown/ for details. +# The output of markdown processing is further processed by doxygen, so you can +# mix doxygen, HTML, and XML commands with Markdown formatting. Disable only in +# case of backward compatibilities issues. +# The default value is: YES. + +MARKDOWN_SUPPORT = YES + +# When the TOC_INCLUDE_HEADINGS tag is set to a non-zero value, all headings up +# to that level are automatically included in the table of contents, even if +# they do not have an id attribute. +# Note: This feature currently applies only to Markdown headings. +# Minimum value: 0, maximum value: 99, default value: 5. +# This tag requires that the tag MARKDOWN_SUPPORT is set to YES. + +TOC_INCLUDE_HEADINGS = 5 + +# When enabled doxygen tries to link words that correspond to documented +# classes, or namespaces to their corresponding documentation. Such a link can +# be prevented in individual cases by putting a % sign in front of the word or +# globally by setting AUTOLINK_SUPPORT to NO. +# The default value is: YES. + +AUTOLINK_SUPPORT = YES + +# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want +# to include (a tag file for) the STL sources as input, then you should set this +# tag to YES in order to let doxygen match functions declarations and +# definitions whose arguments contain STL classes (e.g. func(std::string); +# versus func(std::string) {}). This also make the inheritance and collaboration +# diagrams that involve STL classes more complete and accurate. +# The default value is: NO. + +BUILTIN_STL_SUPPORT = NO + +# If you use Microsoft's C++/CLI language, you should set this option to YES to +# enable parsing support. +# The default value is: NO. + +CPP_CLI_SUPPORT = NO + +# Set the SIP_SUPPORT tag to YES if your project consists of sip (see: +# https://www.riverbankcomputing.com/software/sip/intro) sources only. Doxygen +# will parse them like normal C++ but will assume all classes use public instead +# of private inheritance when no explicit protection keyword is present. +# The default value is: NO. + +SIP_SUPPORT = NO + +# For Microsoft's IDL there are propget and propput attributes to indicate +# getter and setter methods for a property. Setting this option to YES will make +# doxygen to replace the get and set methods by a property in the documentation. +# This will only work if the methods are indeed getting or setting a simple +# type. If this is not the case, or you want to show the methods anyway, you +# should set this option to NO. +# The default value is: YES. + +IDL_PROPERTY_SUPPORT = YES + +# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC +# tag is set to YES then doxygen will reuse the documentation of the first +# member in the group (if any) for the other members of the group. By default +# all members of a group must be documented explicitly. +# The default value is: NO. + +DISTRIBUTE_GROUP_DOC = NO + +# If one adds a struct or class to a group and this option is enabled, then also +# any nested class or struct is added to the same group. By default this option +# is disabled and one has to add nested compounds explicitly via \ingroup. +# The default value is: NO. + +GROUP_NESTED_COMPOUNDS = NO + +# Set the SUBGROUPING tag to YES to allow class member groups of the same type +# (for instance a group of public functions) to be put as a subgroup of that +# type (e.g. under the Public Functions section). Set it to NO to prevent +# subgrouping. Alternatively, this can be done per class using the +# \nosubgrouping command. +# The default value is: YES. + +SUBGROUPING = YES + +# When the INLINE_GROUPED_CLASSES tag is set to YES, classes, structs and unions +# are shown inside the group in which they are included (e.g. using \ingroup) +# instead of on a separate page (for HTML and Man pages) or section (for LaTeX +# and RTF). +# +# Note that this feature does not work in combination with +# SEPARATE_MEMBER_PAGES. +# The default value is: NO. + +INLINE_GROUPED_CLASSES = NO + +# When the INLINE_SIMPLE_STRUCTS tag is set to YES, structs, classes, and unions +# with only public data fields or simple typedef fields will be shown inline in +# the documentation of the scope in which they are defined (i.e. file, +# namespace, or group documentation), provided this scope is documented. If set +# to NO, structs, classes, and unions are shown on a separate page (for HTML and +# Man pages) or section (for LaTeX and RTF). +# The default value is: NO. + +INLINE_SIMPLE_STRUCTS = NO + +# When TYPEDEF_HIDES_STRUCT tag is enabled, a typedef of a struct, union, or +# enum is documented as struct, union, or enum with the name of the typedef. So +# typedef struct TypeS {} TypeT, will appear in the documentation as a struct +# with name TypeT. When disabled the typedef will appear as a member of a file, +# namespace, or class. And the struct will be named TypeS. This can typically be +# useful for C code in case the coding convention dictates that all compound +# types are typedef'ed and only the typedef is referenced, never the tag name. +# The default value is: NO. + +TYPEDEF_HIDES_STRUCT = NO + +# The size of the symbol lookup cache can be set using LOOKUP_CACHE_SIZE. This +# cache is used to resolve symbols given their name and scope. Since this can be +# an expensive process and often the same symbol appears multiple times in the +# code, doxygen keeps a cache of pre-resolved symbols. If the cache is too small +# doxygen will become slower. If the cache is too large, memory is wasted. The +# cache size is given by this formula: 2^(16+LOOKUP_CACHE_SIZE). The valid range +# is 0..9, the default is 0, corresponding to a cache size of 2^16=65536 +# symbols. At the end of a run doxygen will report the cache usage and suggest +# the optimal cache size from a speed point of view. +# Minimum value: 0, maximum value: 9, default value: 0. + +LOOKUP_CACHE_SIZE = 0 + +# The NUM_PROC_THREADS specifies the number threads doxygen is allowed to use +# during processing. When set to 0 doxygen will based this on the number of +# cores available in the system. You can set it explicitly to a value larger +# than 0 to get more control over the balance between CPU load and processing +# speed. At this moment only the input processing can be done using multiple +# threads. Since this is still an experimental feature the default is set to 1, +# which efficively disables parallel processing. Please report any issues you +# encounter. Generating dot graphs in parallel is controlled by the +# DOT_NUM_THREADS setting. +# Minimum value: 0, maximum value: 32, default value: 1. + +NUM_PROC_THREADS = 1 + +#--------------------------------------------------------------------------- +# Build related configuration options +#--------------------------------------------------------------------------- + +# If the EXTRACT_ALL tag is set to YES, doxygen will assume all entities in +# documentation are documented, even if no documentation was available. Private +# class members and static file members will be hidden unless the +# EXTRACT_PRIVATE respectively EXTRACT_STATIC tags are set to YES. +# Note: This will also disable the warnings about undocumented members that are +# normally produced when WARNINGS is set to YES. +# The default value is: NO. + +EXTRACT_ALL = NO + +# If the EXTRACT_PRIVATE tag is set to YES, all private members of a class will +# be included in the documentation. +# The default value is: NO. + +EXTRACT_PRIVATE = NO + +# If the EXTRACT_PRIV_VIRTUAL tag is set to YES, documented private virtual +# methods of a class will be included in the documentation. +# The default value is: NO. + +EXTRACT_PRIV_VIRTUAL = NO + +# If the EXTRACT_PACKAGE tag is set to YES, all members with package or internal +# scope will be included in the documentation. +# The default value is: NO. + +EXTRACT_PACKAGE = NO + +# If the EXTRACT_STATIC tag is set to YES, all static members of a file will be +# included in the documentation. +# The default value is: NO. + +EXTRACT_STATIC = NO + +# If the EXTRACT_LOCAL_CLASSES tag is set to YES, classes (and structs) defined +# locally in source files will be included in the documentation. If set to NO, +# only classes defined in header files are included. Does not have any effect +# for Java sources. +# The default value is: YES. + +EXTRACT_LOCAL_CLASSES = YES + +# This flag is only useful for Objective-C code. If set to YES, local methods, +# which are defined in the implementation section but not in the interface are +# included in the documentation. If set to NO, only methods in the interface are +# included. +# The default value is: NO. + +EXTRACT_LOCAL_METHODS = NO + +# If this flag is set to YES, the members of anonymous namespaces will be +# extracted and appear in the documentation as a namespace called +# 'anonymous_namespace{file}', where file will be replaced with the base name of +# the file that contains the anonymous namespace. By default anonymous namespace +# are hidden. +# The default value is: NO. + +EXTRACT_ANON_NSPACES = NO + +# If this flag is set to YES, the name of an unnamed parameter in a declaration +# will be determined by the corresponding definition. By default unnamed +# parameters remain unnamed in the output. +# The default value is: YES. + +RESOLVE_UNNAMED_PARAMS = YES + +# If the HIDE_UNDOC_MEMBERS tag is set to YES, doxygen will hide all +# undocumented members inside documented classes or files. If set to NO these +# members will be included in the various overviews, but no documentation +# section is generated. This option has no effect if EXTRACT_ALL is enabled. +# The default value is: NO. + +HIDE_UNDOC_MEMBERS = NO + +# If the HIDE_UNDOC_CLASSES tag is set to YES, doxygen will hide all +# undocumented classes that are normally visible in the class hierarchy. If set +# to NO, these classes will be included in the various overviews. This option +# has no effect if EXTRACT_ALL is enabled. +# The default value is: NO. + +HIDE_UNDOC_CLASSES = NO + +# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, doxygen will hide all friend +# declarations. If set to NO, these declarations will be included in the +# documentation. +# The default value is: NO. + +HIDE_FRIEND_COMPOUNDS = NO + +# If the HIDE_IN_BODY_DOCS tag is set to YES, doxygen will hide any +# documentation blocks found inside the body of a function. If set to NO, these +# blocks will be appended to the function's detailed documentation block. +# The default value is: NO. + +HIDE_IN_BODY_DOCS = NO + +# The INTERNAL_DOCS tag determines if documentation that is typed after a +# \internal command is included. If the tag is set to NO then the documentation +# will be excluded. Set it to YES to include the internal documentation. +# The default value is: NO. + +INTERNAL_DOCS = NO + +# With the correct setting of option CASE_SENSE_NAMES doxygen will better be +# able to match the capabilities of the underlying filesystem. In case the +# filesystem is case sensitive (i.e. it supports files in the same directory +# whose names only differ in casing), the option must be set to YES to properly +# deal with such files in case they appear in the input. For filesystems that +# are not case sensitive the option should be be set to NO to properly deal with +# output files written for symbols that only differ in casing, such as for two +# classes, one named CLASS and the other named Class, and to also support +# references to files without having to specify the exact matching casing. On +# Windows (including Cygwin) and MacOS, users should typically set this option +# to NO, whereas on Linux or other Unix flavors it should typically be set to +# YES. +# The default value is: system dependent. + +CASE_SENSE_NAMES = YES + +# If the HIDE_SCOPE_NAMES tag is set to NO then doxygen will show members with +# their full class and namespace scopes in the documentation. If set to YES, the +# scope will be hidden. +# The default value is: NO. + +HIDE_SCOPE_NAMES = NO + +# If the HIDE_COMPOUND_REFERENCE tag is set to NO (default) then doxygen will +# append additional text to a page's title, such as Class Reference. If set to +# YES the compound reference will be hidden. +# The default value is: NO. + +HIDE_COMPOUND_REFERENCE= NO + +# If the SHOW_INCLUDE_FILES tag is set to YES then doxygen will put a list of +# the files that are included by a file in the documentation of that file. +# The default value is: YES. + +SHOW_INCLUDE_FILES = YES + +# If the SHOW_GROUPED_MEMB_INC tag is set to YES then Doxygen will add for each +# grouped member an include statement to the documentation, telling the reader +# which file to include in order to use the member. +# The default value is: NO. + +SHOW_GROUPED_MEMB_INC = NO + +# If the FORCE_LOCAL_INCLUDES tag is set to YES then doxygen will list include +# files with double quotes in the documentation rather than with sharp brackets. +# The default value is: NO. + +FORCE_LOCAL_INCLUDES = NO + +# If the INLINE_INFO tag is set to YES then a tag [inline] is inserted in the +# documentation for inline members. +# The default value is: YES. + +INLINE_INFO = YES + +# If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the +# (detailed) documentation of file and class members alphabetically by member +# name. If set to NO, the members will appear in declaration order. +# The default value is: YES. + +SORT_MEMBER_DOCS = YES + +# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the brief +# descriptions of file, namespace and class members alphabetically by member +# name. If set to NO, the members will appear in declaration order. Note that +# this will also influence the order of the classes in the class list. +# The default value is: NO. + +SORT_BRIEF_DOCS = NO + +# If the SORT_MEMBERS_CTORS_1ST tag is set to YES then doxygen will sort the +# (brief and detailed) documentation of class members so that constructors and +# destructors are listed first. If set to NO the constructors will appear in the +# respective orders defined by SORT_BRIEF_DOCS and SORT_MEMBER_DOCS. +# Note: If SORT_BRIEF_DOCS is set to NO this option is ignored for sorting brief +# member documentation. +# Note: If SORT_MEMBER_DOCS is set to NO this option is ignored for sorting +# detailed member documentation. +# The default value is: NO. + +SORT_MEMBERS_CTORS_1ST = NO + +# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the hierarchy +# of group names into alphabetical order. If set to NO the group names will +# appear in their defined order. +# The default value is: NO. + +SORT_GROUP_NAMES = NO + +# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be sorted by +# fully-qualified names, including namespaces. If set to NO, the class list will +# be sorted only by class name, not including the namespace part. +# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. +# Note: This option applies only to the class list, not to the alphabetical +# list. +# The default value is: NO. + +SORT_BY_SCOPE_NAME = NO + +# If the STRICT_PROTO_MATCHING option is enabled and doxygen fails to do proper +# type resolution of all parameters of a function it will reject a match between +# the prototype and the implementation of a member function even if there is +# only one candidate or it is obvious which candidate to choose by doing a +# simple string match. By disabling STRICT_PROTO_MATCHING doxygen will still +# accept a match between prototype and implementation in such cases. +# The default value is: NO. + +STRICT_PROTO_MATCHING = NO + +# The GENERATE_TODOLIST tag can be used to enable (YES) or disable (NO) the todo +# list. This list is created by putting \todo commands in the documentation. +# The default value is: YES. + +GENERATE_TODOLIST = YES + +# The GENERATE_TESTLIST tag can be used to enable (YES) or disable (NO) the test +# list. This list is created by putting \test commands in the documentation. +# The default value is: YES. + +GENERATE_TESTLIST = YES + +# The GENERATE_BUGLIST tag can be used to enable (YES) or disable (NO) the bug +# list. This list is created by putting \bug commands in the documentation. +# The default value is: YES. + +GENERATE_BUGLIST = YES + +# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or disable (NO) +# the deprecated list. This list is created by putting \deprecated commands in +# the documentation. +# The default value is: YES. + +GENERATE_DEPRECATEDLIST= YES + +# The ENABLED_SECTIONS tag can be used to enable conditional documentation +# sections, marked by \if ... \endif and \cond +# ... \endcond blocks. + +ENABLED_SECTIONS = + +# The MAX_INITIALIZER_LINES tag determines the maximum number of lines that the +# initial value of a variable or macro / define can have for it to appear in the +# documentation. If the initializer consists of more lines than specified here +# it will be hidden. Use a value of 0 to hide initializers completely. The +# appearance of the value of individual variables and macros / defines can be +# controlled using \showinitializer or \hideinitializer command in the +# documentation regardless of this setting. +# Minimum value: 0, maximum value: 10000, default value: 30. + +MAX_INITIALIZER_LINES = 30 + +# Set the SHOW_USED_FILES tag to NO to disable the list of files generated at +# the bottom of the documentation of classes and structs. If set to YES, the +# list will mention the files that were used to generate the documentation. +# The default value is: YES. + +SHOW_USED_FILES = YES + +# Set the SHOW_FILES tag to NO to disable the generation of the Files page. This +# will remove the Files entry from the Quick Index and from the Folder Tree View +# (if specified). +# The default value is: YES. + +SHOW_FILES = YES + +# Set the SHOW_NAMESPACES tag to NO to disable the generation of the Namespaces +# page. This will remove the Namespaces entry from the Quick Index and from the +# Folder Tree View (if specified). +# The default value is: YES. + +SHOW_NAMESPACES = YES + +# The FILE_VERSION_FILTER tag can be used to specify a program or script that +# doxygen should invoke to get the current version for each file (typically from +# the version control system). Doxygen will invoke the program by executing (via +# popen()) the command command input-file, where command is the value of the +# FILE_VERSION_FILTER tag, and input-file is the name of an input file provided +# by doxygen. Whatever the program writes to standard output is used as the file +# version. For an example see the documentation. + +FILE_VERSION_FILTER = + +# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed +# by doxygen. The layout file controls the global structure of the generated +# output files in an output format independent way. To create the layout file +# that represents doxygen's defaults, run doxygen with the -l option. You can +# optionally specify a file name after the option, if omitted DoxygenLayout.xml +# will be used as the name of the layout file. +# +# Note that if you run doxygen from a directory containing a file called +# DoxygenLayout.xml, doxygen will parse it automatically even if the LAYOUT_FILE +# tag is left empty. + +LAYOUT_FILE = + +# The CITE_BIB_FILES tag can be used to specify one or more bib files containing +# the reference definitions. This must be a list of .bib files. The .bib +# extension is automatically appended if omitted. This requires the bibtex tool +# to be installed. See also https://en.wikipedia.org/wiki/BibTeX for more info. +# For LaTeX the style of the bibliography can be controlled using +# LATEX_BIB_STYLE. To use this feature you need bibtex and perl available in the +# search path. See also \cite for info how to create references. + +CITE_BIB_FILES = + +#--------------------------------------------------------------------------- +# Configuration options related to warning and progress messages +#--------------------------------------------------------------------------- + +# The QUIET tag can be used to turn on/off the messages that are generated to +# standard output by doxygen. If QUIET is set to YES this implies that the +# messages are off. +# The default value is: NO. + +QUIET = NO + +# The WARNINGS tag can be used to turn on/off the warning messages that are +# generated to standard error (stderr) by doxygen. If WARNINGS is set to YES +# this implies that the warnings are on. +# +# Tip: Turn warnings on while writing the documentation. +# The default value is: YES. + +WARNINGS = YES + +# If the WARN_IF_UNDOCUMENTED tag is set to YES then doxygen will generate +# warnings for undocumented members. If EXTRACT_ALL is set to YES then this flag +# will automatically be disabled. +# The default value is: YES. + +WARN_IF_UNDOCUMENTED = YES + +# If the WARN_IF_DOC_ERROR tag is set to YES, doxygen will generate warnings for +# potential errors in the documentation, such as not documenting some parameters +# in a documented function, or documenting parameters that don't exist or using +# markup commands wrongly. +# The default value is: YES. + +WARN_IF_DOC_ERROR = YES + +# This WARN_NO_PARAMDOC option can be enabled to get warnings for functions that +# are documented, but have no documentation for their parameters or return +# value. If set to NO, doxygen will only warn about wrong or incomplete +# parameter documentation, but not about the absence of documentation. If +# EXTRACT_ALL is set to YES then this flag will automatically be disabled. +# The default value is: NO. + +WARN_NO_PARAMDOC = NO + +# If the WARN_AS_ERROR tag is set to YES then doxygen will immediately stop when +# a warning is encountered. If the WARN_AS_ERROR tag is set to FAIL_ON_WARNINGS +# then doxygen will continue running as if WARN_AS_ERROR tag is set to NO, but +# at the end of the doxygen process doxygen will return with a non-zero status. +# Possible values are: NO, YES and FAIL_ON_WARNINGS. +# The default value is: NO. + +WARN_AS_ERROR = NO + +# The WARN_FORMAT tag determines the format of the warning messages that doxygen +# can produce. The string should contain the $file, $line, and $text tags, which +# will be replaced by the file and line number from which the warning originated +# and the warning text. Optionally the format may contain $version, which will +# be replaced by the version of the file (if it could be obtained via +# FILE_VERSION_FILTER) +# The default value is: $file:$line: $text. + +WARN_FORMAT = "$file:$line: $text" + +# The WARN_LOGFILE tag can be used to specify a file to which warning and error +# messages should be written. If left blank the output is written to standard +# error (stderr). + +WARN_LOGFILE = + +#--------------------------------------------------------------------------- +# Configuration options related to the input files +#--------------------------------------------------------------------------- + +# The INPUT tag is used to specify the files and/or directories that contain +# documented source files. You may enter file names like myfile.cpp or +# directories like /usr/src/myproject. Separate the files or directories with +# spaces. See also FILE_PATTERNS and EXTENSION_MAPPING +# Note: If this tag is empty the current directory is searched. + +INPUT = ./doxy_index.md ../src/ + +# This tag can be used to specify the character encoding of the source files +# that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses +# libiconv (or the iconv built into libc) for the transcoding. See the libiconv +# documentation (see: +# https://www.gnu.org/software/libiconv/) for the list of possible encodings. +# The default value is: UTF-8. + +INPUT_ENCODING = UTF-8 + +# If the value of the INPUT tag contains directories, you can use the +# FILE_PATTERNS tag to specify one or more wildcard patterns (like *.cpp and +# *.h) to filter out the source-files in the directories. +# +# Note that for custom extensions or not directly supported extensions you also +# need to set EXTENSION_MAPPING for the extension otherwise the files are not +# read by doxygen. +# +# Note the list of default checked file patterns might differ from the list of +# default file extension mappings. +# +# If left blank the following patterns are tested:*.c, *.cc, *.cxx, *.cpp, +# *.c++, *.java, *.ii, *.ixx, *.ipp, *.i++, *.inl, *.idl, *.ddl, *.odl, *.h, +# *.hh, *.hxx, *.hpp, *.h++, *.cs, *.d, *.php, *.php4, *.php5, *.phtml, *.inc, +# *.m, *.markdown, *.md, *.mm, *.dox (to be provided as doxygen C comment), +# *.py, *.pyw, *.f90, *.f95, *.f03, *.f08, *.f18, *.f, *.for, *.vhd, *.vhdl, +# *.ucf, *.qsf and *.ice. + +FILE_PATTERNS = *.c \ + *.cc \ + *.cxx \ + *.cpp \ + *.c++ \ + *.java \ + *.ii \ + *.ixx \ + *.ipp \ + *.i++ \ + *.inl \ + *.idl \ + *.ddl \ + *.odl \ + *.h \ + *.hh \ + *.hxx \ + *.hpp \ + *.h++ \ + *.cs \ + *.d \ + *.php \ + *.php4 \ + *.php5 \ + *.phtml \ + *.inc \ + *.m \ + *.markdown \ + *.md \ + *.mm \ + *.dox \ + *.py \ + *.pyw \ + *.f90 \ + *.f95 \ + *.f03 \ + *.f08 \ + *.f18 \ + *.f \ + *.for \ + *.vhd \ + *.vhdl \ + *.ucf \ + *.qsf \ + *.ice + +# The RECURSIVE tag can be used to specify whether or not subdirectories should +# be searched for input files as well. +# The default value is: NO. + +RECURSIVE = YES + +# The EXCLUDE tag can be used to specify files and/or directories that should be +# excluded from the INPUT source files. This way you can easily exclude a +# subdirectory from a directory tree whose root is specified with the INPUT tag. +# +# Note that relative paths are relative to the directory from which doxygen is +# run. + +EXCLUDE = + +# The EXCLUDE_SYMLINKS tag can be used to select whether or not files or +# directories that are symbolic links (a Unix file system feature) are excluded +# from the input. +# The default value is: NO. + +EXCLUDE_SYMLINKS = NO + +# If the value of the INPUT tag contains directories, you can use the +# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude +# certain files from those directories. +# +# Note that the wildcards are matched against the file with absolute path, so to +# exclude all test directories for example use the pattern */test/* + +EXCLUDE_PATTERNS = + +# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names +# (namespaces, classes, functions, etc.) that should be excluded from the +# output. The symbol name can be a fully qualified name, a word, or if the +# wildcard * is used, a substring. Examples: ANamespace, AClass, +# AClass::ANamespace, ANamespace::*Test +# +# Note that the wildcards are matched against the file with absolute path, so to +# exclude all test directories use the pattern */test/* + +EXCLUDE_SYMBOLS = + +# The EXAMPLE_PATH tag can be used to specify one or more files or directories +# that contain example code fragments that are included (see the \include +# command). + +EXAMPLE_PATH = + +# If the value of the EXAMPLE_PATH tag contains directories, you can use the +# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp and +# *.h) to filter out the source-files in the directories. If left blank all +# files are included. + +EXAMPLE_PATTERNS = * + +# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be +# searched for input files to be used with the \include or \dontinclude commands +# irrespective of the value of the RECURSIVE tag. +# The default value is: NO. + +EXAMPLE_RECURSIVE = NO + +# The IMAGE_PATH tag can be used to specify one or more files or directories +# that contain images that are to be included in the documentation (see the +# \image command). + +IMAGE_PATH = + +# The INPUT_FILTER tag can be used to specify a program that doxygen should +# invoke to filter for each input file. Doxygen will invoke the filter program +# by executing (via popen()) the command: +# +# +# +# where is the value of the INPUT_FILTER tag, and is the +# name of an input file. Doxygen will then use the output that the filter +# program writes to standard output. If FILTER_PATTERNS is specified, this tag +# will be ignored. +# +# Note that the filter must not add or remove lines; it is applied before the +# code is scanned, but not when the output code is generated. If lines are added +# or removed, the anchors will not be placed correctly. +# +# Note that for custom extensions or not directly supported extensions you also +# need to set EXTENSION_MAPPING for the extension otherwise the files are not +# properly processed by doxygen. + +INPUT_FILTER = + +# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern +# basis. Doxygen will compare the file name with each pattern and apply the +# filter if there is a match. The filters are a list of the form: pattern=filter +# (like *.cpp=my_cpp_filter). See INPUT_FILTER for further information on how +# filters are used. If the FILTER_PATTERNS tag is empty or if none of the +# patterns match the file name, INPUT_FILTER is applied. +# +# Note that for custom extensions or not directly supported extensions you also +# need to set EXTENSION_MAPPING for the extension otherwise the files are not +# properly processed by doxygen. + +FILTER_PATTERNS = + +# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using +# INPUT_FILTER) will also be used to filter the input files that are used for +# producing the source files to browse (i.e. when SOURCE_BROWSER is set to YES). +# The default value is: NO. + +FILTER_SOURCE_FILES = NO + +# The FILTER_SOURCE_PATTERNS tag can be used to specify source filters per file +# pattern. A pattern will override the setting for FILTER_PATTERN (if any) and +# it is also possible to disable source filtering for a specific pattern using +# *.ext= (so without naming a filter). +# This tag requires that the tag FILTER_SOURCE_FILES is set to YES. + +FILTER_SOURCE_PATTERNS = + +# If the USE_MDFILE_AS_MAINPAGE tag refers to the name of a markdown file that +# is part of the input, its contents will be placed on the main page +# (index.html). This can be useful if you have a project on for instance GitHub +# and want to reuse the introduction page also for the doxygen output. + +USE_MDFILE_AS_MAINPAGE = doxy_index.md + +#--------------------------------------------------------------------------- +# Configuration options related to source browsing +#--------------------------------------------------------------------------- + +# If the SOURCE_BROWSER tag is set to YES then a list of source files will be +# generated. Documented entities will be cross-referenced with these sources. +# +# Note: To get rid of all source code in the generated output, make sure that +# also VERBATIM_HEADERS is set to NO. +# The default value is: NO. + +SOURCE_BROWSER = NO + +# Setting the INLINE_SOURCES tag to YES will include the body of functions, +# classes and enums directly into the documentation. +# The default value is: NO. + +INLINE_SOURCES = NO + +# Setting the STRIP_CODE_COMMENTS tag to YES will instruct doxygen to hide any +# special comment blocks from generated source code fragments. Normal C, C++ and +# Fortran comments will always remain visible. +# The default value is: YES. + +STRIP_CODE_COMMENTS = YES + +# If the REFERENCED_BY_RELATION tag is set to YES then for each documented +# entity all documented functions referencing it will be listed. +# The default value is: NO. + +REFERENCED_BY_RELATION = NO + +# If the REFERENCES_RELATION tag is set to YES then for each documented function +# all documented entities called/used by that function will be listed. +# The default value is: NO. + +REFERENCES_RELATION = NO + +# If the REFERENCES_LINK_SOURCE tag is set to YES and SOURCE_BROWSER tag is set +# to YES then the hyperlinks from functions in REFERENCES_RELATION and +# REFERENCED_BY_RELATION lists will link to the source code. Otherwise they will +# link to the documentation. +# The default value is: YES. + +REFERENCES_LINK_SOURCE = YES + +# If SOURCE_TOOLTIPS is enabled (the default) then hovering a hyperlink in the +# source code will show a tooltip with additional information such as prototype, +# brief description and links to the definition and documentation. Since this +# will make the HTML file larger and loading of large files a bit slower, you +# can opt to disable this feature. +# The default value is: YES. +# This tag requires that the tag SOURCE_BROWSER is set to YES. + +SOURCE_TOOLTIPS = YES + +# If the USE_HTAGS tag is set to YES then the references to source code will +# point to the HTML generated by the htags(1) tool instead of doxygen built-in +# source browser. The htags tool is part of GNU's global source tagging system +# (see https://www.gnu.org/software/global/global.html). You will need version +# 4.8.6 or higher. +# +# To use it do the following: +# - Install the latest version of global +# - Enable SOURCE_BROWSER and USE_HTAGS in the configuration file +# - Make sure the INPUT points to the root of the source tree +# - Run doxygen as normal +# +# Doxygen will invoke htags (and that will in turn invoke gtags), so these +# tools must be available from the command line (i.e. in the search path). +# +# The result: instead of the source browser generated by doxygen, the links to +# source code will now point to the output of htags. +# The default value is: NO. +# This tag requires that the tag SOURCE_BROWSER is set to YES. + +USE_HTAGS = NO + +# If the VERBATIM_HEADERS tag is set the YES then doxygen will generate a +# verbatim copy of the header file for each class for which an include is +# specified. Set to NO to disable this. +# See also: Section \class. +# The default value is: YES. + +VERBATIM_HEADERS = YES + +# If the CLANG_ASSISTED_PARSING tag is set to YES then doxygen will use the +# clang parser (see: +# http://clang.llvm.org/) for more accurate parsing at the cost of reduced +# performance. This can be particularly helpful with template rich C++ code for +# which doxygen's built-in parser lacks the necessary type information. +# Note: The availability of this option depends on whether or not doxygen was +# generated with the -Duse_libclang=ON option for CMake. +# The default value is: NO. + +CLANG_ASSISTED_PARSING = NO + +# If clang assisted parsing is enabled and the CLANG_ADD_INC_PATHS tag is set to +# YES then doxygen will add the directory of each input to the include path. +# The default value is: YES. + +CLANG_ADD_INC_PATHS = YES + +# If clang assisted parsing is enabled you can provide the compiler with command +# line options that you would normally use when invoking the compiler. Note that +# the include paths will already be set by doxygen for the files and directories +# specified with INPUT and INCLUDE_PATH. +# This tag requires that the tag CLANG_ASSISTED_PARSING is set to YES. + +CLANG_OPTIONS = + +# If clang assisted parsing is enabled you can provide the clang parser with the +# path to the directory containing a file called compile_commands.json. This +# file is the compilation database (see: +# http://clang.llvm.org/docs/HowToSetupToolingForLLVM.html) containing the +# options used when the source files were built. This is equivalent to +# specifying the -p option to a clang tool, such as clang-check. These options +# will then be passed to the parser. Any options specified with CLANG_OPTIONS +# will be added as well. +# Note: The availability of this option depends on whether or not doxygen was +# generated with the -Duse_libclang=ON option for CMake. + +CLANG_DATABASE_PATH = + +#--------------------------------------------------------------------------- +# Configuration options related to the alphabetical class index +#--------------------------------------------------------------------------- + +# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index of all +# compounds will be generated. Enable this if the project contains a lot of +# classes, structs, unions or interfaces. +# The default value is: YES. + +ALPHABETICAL_INDEX = YES + +# In case all classes in a project start with a common prefix, all classes will +# be put under the same header in the alphabetical index. The IGNORE_PREFIX tag +# can be used to specify a prefix (or a list of prefixes) that should be ignored +# while generating the index headers. +# This tag requires that the tag ALPHABETICAL_INDEX is set to YES. + +IGNORE_PREFIX = + +#--------------------------------------------------------------------------- +# Configuration options related to the HTML output +#--------------------------------------------------------------------------- + +# If the GENERATE_HTML tag is set to YES, doxygen will generate HTML output +# The default value is: YES. + +GENERATE_HTML = YES + +# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. If a +# relative path is entered the value of OUTPUT_DIRECTORY will be put in front of +# it. +# The default directory is: html. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_OUTPUT = html + +# The HTML_FILE_EXTENSION tag can be used to specify the file extension for each +# generated HTML page (for example: .htm, .php, .asp). +# The default value is: .html. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_FILE_EXTENSION = .html + +# The HTML_HEADER tag can be used to specify a user-defined HTML header file for +# each generated HTML page. If the tag is left blank doxygen will generate a +# standard header. +# +# To get valid HTML the header file that includes any scripts and style sheets +# that doxygen needs, which is dependent on the configuration options used (e.g. +# the setting GENERATE_TREEVIEW). It is highly recommended to start with a +# default header using +# doxygen -w html new_header.html new_footer.html new_stylesheet.css +# YourConfigFile +# and then modify the file new_header.html. See also section "Doxygen usage" +# for information on how to generate the default header that doxygen normally +# uses. +# Note: The header is subject to change so you typically have to regenerate the +# default header when upgrading to a newer version of doxygen. For a description +# of the possible markers and block names see the documentation. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_HEADER = + +# The HTML_FOOTER tag can be used to specify a user-defined HTML footer for each +# generated HTML page. If the tag is left blank doxygen will generate a standard +# footer. See HTML_HEADER for more information on how to generate a default +# footer and what special commands can be used inside the footer. See also +# section "Doxygen usage" for information on how to generate the default footer +# that doxygen normally uses. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_FOOTER = + +# The HTML_STYLESHEET tag can be used to specify a user-defined cascading style +# sheet that is used by each HTML page. It can be used to fine-tune the look of +# the HTML output. If left blank doxygen will generate a default style sheet. +# See also section "Doxygen usage" for information on how to generate the style +# sheet that doxygen normally uses. +# Note: It is recommended to use HTML_EXTRA_STYLESHEET instead of this tag, as +# it is more robust and this tag (HTML_STYLESHEET) will in the future become +# obsolete. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_STYLESHEET = + +# The HTML_EXTRA_STYLESHEET tag can be used to specify additional user-defined +# cascading style sheets that are included after the standard style sheets +# created by doxygen. Using this option one can overrule certain style aspects. +# This is preferred over using HTML_STYLESHEET since it does not replace the +# standard style sheet and is therefore more robust against future updates. +# Doxygen will copy the style sheet files to the output directory. +# Note: The order of the extra style sheet files is of importance (e.g. the last +# style sheet in the list overrules the setting of the previous ones in the +# list). For an example see the documentation. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_EXTRA_STYLESHEET = + +# The HTML_EXTRA_FILES tag can be used to specify one or more extra images or +# other source files which should be copied to the HTML output directory. Note +# that these files will be copied to the base HTML output directory. Use the +# $relpath^ marker in the HTML_HEADER and/or HTML_FOOTER files to load these +# files. In the HTML_STYLESHEET file, use the file name only. Also note that the +# files will be copied as-is; there are no commands or markers available. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_EXTRA_FILES = + +# The HTML_COLORSTYLE_HUE tag controls the color of the HTML output. Doxygen +# will adjust the colors in the style sheet and background images according to +# this color. Hue is specified as an angle on a colorwheel, see +# https://en.wikipedia.org/wiki/Hue for more information. For instance the value +# 0 represents red, 60 is yellow, 120 is green, 180 is cyan, 240 is blue, 300 +# purple, and 360 is red again. +# Minimum value: 0, maximum value: 359, default value: 220. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_COLORSTYLE_HUE = 220 + +# The HTML_COLORSTYLE_SAT tag controls the purity (or saturation) of the colors +# in the HTML output. For a value of 0 the output will use grayscales only. A +# value of 255 will produce the most vivid colors. +# Minimum value: 0, maximum value: 255, default value: 100. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_COLORSTYLE_SAT = 100 + +# The HTML_COLORSTYLE_GAMMA tag controls the gamma correction applied to the +# luminance component of the colors in the HTML output. Values below 100 +# gradually make the output lighter, whereas values above 100 make the output +# darker. The value divided by 100 is the actual gamma applied, so 80 represents +# a gamma of 0.8, The value 220 represents a gamma of 2.2, and 100 does not +# change the gamma. +# Minimum value: 40, maximum value: 240, default value: 80. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_COLORSTYLE_GAMMA = 80 + +# If the HTML_TIMESTAMP tag is set to YES then the footer of each generated HTML +# page will contain the date and time when the page was generated. Setting this +# to YES can help to show when doxygen was last run and thus if the +# documentation is up to date. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_TIMESTAMP = NO + +# If the HTML_DYNAMIC_MENUS tag is set to YES then the generated HTML +# documentation will contain a main index with vertical navigation menus that +# are dynamically created via JavaScript. If disabled, the navigation index will +# consists of multiple levels of tabs that are statically embedded in every HTML +# page. Disable this option to support browsers that do not have JavaScript, +# like the Qt help browser. +# The default value is: YES. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_DYNAMIC_MENUS = YES + +# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML +# documentation will contain sections that can be hidden and shown after the +# page has loaded. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_DYNAMIC_SECTIONS = NO + +# With HTML_INDEX_NUM_ENTRIES one can control the preferred number of entries +# shown in the various tree structured indices initially; the user can expand +# and collapse entries dynamically later on. Doxygen will expand the tree to +# such a level that at most the specified number of entries are visible (unless +# a fully collapsed tree already exceeds this amount). So setting the number of +# entries 1 will produce a full collapsed tree by default. 0 is a special value +# representing an infinite number of entries and will result in a full expanded +# tree by default. +# Minimum value: 0, maximum value: 9999, default value: 100. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_INDEX_NUM_ENTRIES = 100 + +# If the GENERATE_DOCSET tag is set to YES, additional index files will be +# generated that can be used as input for Apple's Xcode 3 integrated development +# environment (see: +# https://developer.apple.com/xcode/), introduced with OSX 10.5 (Leopard). To +# create a documentation set, doxygen will generate a Makefile in the HTML +# output directory. Running make will produce the docset in that directory and +# running make install will install the docset in +# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find it at +# startup. See https://developer.apple.com/library/archive/featuredarticles/Doxy +# genXcode/_index.html for more information. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_DOCSET = NO + +# This tag determines the name of the docset feed. A documentation feed provides +# an umbrella under which multiple documentation sets from a single provider +# (such as a company or product suite) can be grouped. +# The default value is: Doxygen generated docs. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_FEEDNAME = "Doxygen generated docs" + +# This tag specifies a string that should uniquely identify the documentation +# set bundle. This should be a reverse domain-name style string, e.g. +# com.mycompany.MyDocSet. Doxygen will append .docset to the name. +# The default value is: org.doxygen.Project. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_BUNDLE_ID = org.doxygen.Project + +# The DOCSET_PUBLISHER_ID tag specifies a string that should uniquely identify +# the documentation publisher. This should be a reverse domain-name style +# string, e.g. com.mycompany.MyDocSet.documentation. +# The default value is: org.doxygen.Publisher. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_PUBLISHER_ID = org.doxygen.Publisher + +# The DOCSET_PUBLISHER_NAME tag identifies the documentation publisher. +# The default value is: Publisher. +# This tag requires that the tag GENERATE_DOCSET is set to YES. + +DOCSET_PUBLISHER_NAME = Publisher + +# If the GENERATE_HTMLHELP tag is set to YES then doxygen generates three +# additional HTML index files: index.hhp, index.hhc, and index.hhk. The +# index.hhp is a project file that can be read by Microsoft's HTML Help Workshop +# (see: +# https://www.microsoft.com/en-us/download/details.aspx?id=21138) on Windows. +# +# The HTML Help Workshop contains a compiler that can convert all HTML output +# generated by doxygen into a single compiled HTML file (.chm). Compiled HTML +# files are now used as the Windows 98 help format, and will replace the old +# Windows help format (.hlp) on all Windows platforms in the future. Compressed +# HTML files also contain an index, a table of contents, and you can search for +# words in the documentation. The HTML workshop also contains a viewer for +# compressed HTML files. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_HTMLHELP = NO + +# The CHM_FILE tag can be used to specify the file name of the resulting .chm +# file. You can add a path in front of the file if the result should not be +# written to the html output directory. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +CHM_FILE = + +# The HHC_LOCATION tag can be used to specify the location (absolute path +# including file name) of the HTML help compiler (hhc.exe). If non-empty, +# doxygen will try to run the HTML help compiler on the generated index.hhp. +# The file has to be specified with full path. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +HHC_LOCATION = + +# The GENERATE_CHI flag controls if a separate .chi index file is generated +# (YES) or that it should be included in the main .chm file (NO). +# The default value is: NO. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +GENERATE_CHI = NO + +# The CHM_INDEX_ENCODING is used to encode HtmlHelp index (hhk), content (hhc) +# and project file content. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +CHM_INDEX_ENCODING = + +# The BINARY_TOC flag controls whether a binary table of contents is generated +# (YES) or a normal table of contents (NO) in the .chm file. Furthermore it +# enables the Previous and Next buttons. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +BINARY_TOC = NO + +# The TOC_EXPAND flag can be set to YES to add extra items for group members to +# the table of contents of the HTML help documentation and to the tree view. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTMLHELP is set to YES. + +TOC_EXPAND = NO + +# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and +# QHP_VIRTUAL_FOLDER are set, an additional index file will be generated that +# can be used as input for Qt's qhelpgenerator to generate a Qt Compressed Help +# (.qch) of the generated HTML documentation. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_QHP = NO + +# If the QHG_LOCATION tag is specified, the QCH_FILE tag can be used to specify +# the file name of the resulting .qch file. The path specified is relative to +# the HTML output folder. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QCH_FILE = + +# The QHP_NAMESPACE tag specifies the namespace to use when generating Qt Help +# Project output. For more information please see Qt Help Project / Namespace +# (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#namespace). +# The default value is: org.doxygen.Project. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_NAMESPACE = org.doxygen.Project + +# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating Qt +# Help Project output. For more information please see Qt Help Project / Virtual +# Folders (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#virtual-folders). +# The default value is: doc. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_VIRTUAL_FOLDER = doc + +# If the QHP_CUST_FILTER_NAME tag is set, it specifies the name of a custom +# filter to add. For more information please see Qt Help Project / Custom +# Filters (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters). +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_CUST_FILTER_NAME = + +# The QHP_CUST_FILTER_ATTRS tag specifies the list of the attributes of the +# custom filter to add. For more information please see Qt Help Project / Custom +# Filters (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#custom-filters). +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_CUST_FILTER_ATTRS = + +# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this +# project's filter section matches. Qt Help Project / Filter Attributes (see: +# https://doc.qt.io/archives/qt-4.8/qthelpproject.html#filter-attributes). +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHP_SECT_FILTER_ATTRS = + +# The QHG_LOCATION tag can be used to specify the location (absolute path +# including file name) of Qt's qhelpgenerator. If non-empty doxygen will try to +# run qhelpgenerator on the generated .qhp file. +# This tag requires that the tag GENERATE_QHP is set to YES. + +QHG_LOCATION = + +# If the GENERATE_ECLIPSEHELP tag is set to YES, additional index files will be +# generated, together with the HTML files, they form an Eclipse help plugin. To +# install this plugin and make it available under the help contents menu in +# Eclipse, the contents of the directory containing the HTML and XML files needs +# to be copied into the plugins directory of eclipse. The name of the directory +# within the plugins directory should be the same as the ECLIPSE_DOC_ID value. +# After copying Eclipse needs to be restarted before the help appears. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_ECLIPSEHELP = NO + +# A unique identifier for the Eclipse help plugin. When installing the plugin +# the directory name containing the HTML and XML files should also have this +# name. Each documentation set should have its own identifier. +# The default value is: org.doxygen.Project. +# This tag requires that the tag GENERATE_ECLIPSEHELP is set to YES. + +ECLIPSE_DOC_ID = org.doxygen.Project + +# If you want full control over the layout of the generated HTML pages it might +# be necessary to disable the index and replace it with your own. The +# DISABLE_INDEX tag can be used to turn on/off the condensed index (tabs) at top +# of each HTML page. A value of NO enables the index and the value YES disables +# it. Since the tabs in the index contain the same information as the navigation +# tree, you can set this option to YES if you also set GENERATE_TREEVIEW to YES. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +DISABLE_INDEX = NO + +# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index +# structure should be generated to display hierarchical information. If the tag +# value is set to YES, a side panel will be generated containing a tree-like +# index structure (just like the one that is generated for HTML Help). For this +# to work a browser that supports JavaScript, DHTML, CSS and frames is required +# (i.e. any modern browser). Windows users are probably better off using the +# HTML help feature. Via custom style sheets (see HTML_EXTRA_STYLESHEET) one can +# further fine-tune the look of the index. As an example, the default style +# sheet generated by doxygen has an example that shows how to put an image at +# the root of the tree instead of the PROJECT_NAME. Since the tree basically has +# the same information as the tab index, you could consider setting +# DISABLE_INDEX to YES when enabling this option. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +GENERATE_TREEVIEW = NO + +# The ENUM_VALUES_PER_LINE tag can be used to set the number of enum values that +# doxygen will group on one line in the generated HTML documentation. +# +# Note that a value of 0 will completely suppress the enum values from appearing +# in the overview section. +# Minimum value: 0, maximum value: 20, default value: 4. +# This tag requires that the tag GENERATE_HTML is set to YES. + +ENUM_VALUES_PER_LINE = 4 + +# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be used +# to set the initial width (in pixels) of the frame in which the tree is shown. +# Minimum value: 0, maximum value: 1500, default value: 250. +# This tag requires that the tag GENERATE_HTML is set to YES. + +TREEVIEW_WIDTH = 250 + +# If the EXT_LINKS_IN_WINDOW option is set to YES, doxygen will open links to +# external symbols imported via tag files in a separate window. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +EXT_LINKS_IN_WINDOW = NO + +# If the HTML_FORMULA_FORMAT option is set to svg, doxygen will use the pdf2svg +# tool (see https://github.com/dawbarton/pdf2svg) or inkscape (see +# https://inkscape.org) to generate formulas as SVG images instead of PNGs for +# the HTML output. These images will generally look nicer at scaled resolutions. +# Possible values are: png (the default) and svg (looks nicer but requires the +# pdf2svg or inkscape tool). +# The default value is: png. +# This tag requires that the tag GENERATE_HTML is set to YES. + +HTML_FORMULA_FORMAT = png + +# Use this tag to change the font size of LaTeX formulas included as images in +# the HTML documentation. When you change the font size after a successful +# doxygen run you need to manually remove any form_*.png images from the HTML +# output directory to force them to be regenerated. +# Minimum value: 8, maximum value: 50, default value: 10. +# This tag requires that the tag GENERATE_HTML is set to YES. + +FORMULA_FONTSIZE = 10 + +# Use the FORMULA_TRANSPARENT tag to determine whether or not the images +# generated for formulas are transparent PNGs. Transparent PNGs are not +# supported properly for IE 6.0, but are supported on all modern browsers. +# +# Note that when changing this option you need to delete any form_*.png files in +# the HTML output directory before the changes have effect. +# The default value is: YES. +# This tag requires that the tag GENERATE_HTML is set to YES. + +FORMULA_TRANSPARENT = YES + +# The FORMULA_MACROFILE can contain LaTeX \newcommand and \renewcommand commands +# to create new LaTeX commands to be used in formulas as building blocks. See +# the section "Including formulas" for details. + +FORMULA_MACROFILE = + +# Enable the USE_MATHJAX option to render LaTeX formulas using MathJax (see +# https://www.mathjax.org) which uses client side JavaScript for the rendering +# instead of using pre-rendered bitmaps. Use this if you do not have LaTeX +# installed or if you want to formulas look prettier in the HTML output. When +# enabled you may also need to install MathJax separately and configure the path +# to it using the MATHJAX_RELPATH option. +# The default value is: NO. +# This tag requires that the tag GENERATE_HTML is set to YES. + +USE_MATHJAX = NO + +# When MathJax is enabled you can set the default output format to be used for +# the MathJax output. See the MathJax site (see: +# http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. +# Possible values are: HTML-CSS (which is slower, but has the best +# compatibility), NativeMML (i.e. MathML) and SVG. +# The default value is: HTML-CSS. +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_FORMAT = HTML-CSS + +# When MathJax is enabled you need to specify the location relative to the HTML +# output directory using the MATHJAX_RELPATH option. The destination directory +# should contain the MathJax.js script. For instance, if the mathjax directory +# is located at the same level as the HTML output directory, then +# MATHJAX_RELPATH should be ../mathjax. The default value points to the MathJax +# Content Delivery Network so you can quickly see the result without installing +# MathJax. However, it is strongly recommended to install a local copy of +# MathJax from https://www.mathjax.org before deployment. +# The default value is: https://cdn.jsdelivr.net/npm/mathjax@2. +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_RELPATH = https://cdn.jsdelivr.net/npm/mathjax@2 + +# The MATHJAX_EXTENSIONS tag can be used to specify one or more MathJax +# extension names that should be enabled during MathJax rendering. For example +# MATHJAX_EXTENSIONS = TeX/AMSmath TeX/AMSsymbols +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_EXTENSIONS = + +# The MATHJAX_CODEFILE tag can be used to specify a file with javascript pieces +# of code that will be used on startup of the MathJax code. See the MathJax site +# (see: +# http://docs.mathjax.org/en/v2.7-latest/output.html) for more details. For an +# example see the documentation. +# This tag requires that the tag USE_MATHJAX is set to YES. + +MATHJAX_CODEFILE = + +# When the SEARCHENGINE tag is enabled doxygen will generate a search box for +# the HTML output. The underlying search engine uses javascript and DHTML and +# should work on any modern browser. Note that when using HTML help +# (GENERATE_HTMLHELP), Qt help (GENERATE_QHP), or docsets (GENERATE_DOCSET) +# there is already a search function so this one should typically be disabled. +# For large projects the javascript based search engine can be slow, then +# enabling SERVER_BASED_SEARCH may provide a better solution. It is possible to +# search using the keyboard; to jump to the search box use + S +# (what the is depends on the OS and browser, but it is typically +# , /