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sbpack_nf missing requirements #99

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dmiller15 opened this issue Nov 25, 2024 · 0 comments
Open

sbpack_nf missing requirements #99

dmiller15 opened this issue Nov 25, 2024 · 0 comments

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@dmiller15
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Following the normal installation guidelines, pipx will fail to build a functional executor for spack_nf. See the error below:

> sbpack_nf
Traceback (most recent call last):
  File "/Users/millerd15/.local/bin/sbpack_nf", line 5, in <module>
    from sbpack.noncwl.nextflow import main
  File "/Users/millerd15/.local/pipx/venvs/sbpack/lib/python3.12/site-packages/sbpack/noncwl/nextflow.py", line 10, in <module>
    from nf_core.schema import PipelineSchema
  File "/Users/millerd15/.local/pipx/venvs/sbpack/lib/python3.12/site-packages/nf_core/__init__.py", line 7, in <module>
    import pkg_resources
ModuleNotFoundError: No module named 'pkg_resources'

Updating the requirements file with setuptools will resolve this error.

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