From 5a20b48debfd48ecbb6695340055213fa8ff6ab4 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Fri, 17 Mar 2023 13:51:52 +0100 Subject: [PATCH] prep for release --- DESCRIPTION | 4 +- NEWS.md | 2 + cran-comments.md | 17 +- man/gtable-package.Rd | 4 +- revdep/README.md | 115 +- revdep/cran.md | 14 + revdep/failures.md | 224 +++ revdep/problems.md | 3232 +---------------------------------------- 8 files changed, 267 insertions(+), 3345 deletions(-) create mode 100644 revdep/cran.md create mode 100644 revdep/failures.md diff --git a/DESCRIPTION b/DESCRIPTION index 0956750..6a7d5da 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -4,11 +4,11 @@ Version: 0.3.1.9000 Authors@R: c(person(given = "Hadley", family = "Wickham", - role = c("aut", "cre"), + role = "aut", email = "hadley@posit.co"), person(given = "Thomas Lin", family = "Pedersen", - role = "aut", + role = c("aut", "cre"), email = "thomas.pedersen@posit.co"), person(given = "Posit Software, PBC", role = "cph")) diff --git a/NEWS.md b/NEWS.md index 242b984..3a07a38 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,5 +1,7 @@ # gtable (development version) +* General upkeep + # gtable 0.3.1 * Re-documented to fix HTML issues in `.Rd`. diff --git a/cran-comments.md b/cran-comments.md index 6178675..f045eaf 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1 +1,16 @@ -This was a patch to fix the HTML in .Rd problems; we did not re-check revdeps. +General upkeep of package + +## revdepcheck results + +We checked 91 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 3 packages + +Issues with CRAN packages are summarised below. + +### Failed to check + +* ggPMX (NA) +* loon.ggplot (NA) +* tidySEM (NA) diff --git a/man/gtable-package.Rd b/man/gtable-package.Rd index ec958c5..28da9c2 100644 --- a/man/gtable-package.Rd +++ b/man/gtable-package.Rd @@ -18,11 +18,11 @@ Useful links: } \author{ -\strong{Maintainer}: Hadley Wickham \email{hadley@posit.co} +\strong{Maintainer}: Thomas Lin Pedersen \email{thomas.pedersen@posit.co} Authors: \itemize{ - \item Thomas Lin Pedersen \email{thomas.pedersen@posit.co} + \item Hadley Wickham \email{hadley@posit.co} } Other contributors: diff --git a/revdep/README.md b/revdep/README.md index 0c40aa7..cce0984 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,113 +1,10 @@ -# Platform - -|field |value | -|:--------|:----------------------------| -|version |R version 3.5.1 (2018-07-02) | -|os |macOS 10.14.3 | -|system |x86_64, darwin15.6.0 | -|ui |RStudio | -|language |(EN) | -|collate |en_US.UTF-8 | -|ctype |en_US.UTF-8 | -|tz |Europe/Copenhagen | -|date |2019-03-18 | - -# Dependencies - -|package |old |new |Δ | -|:-------|:-----|:---|:--| -|gtable |0.2.0 |NA |* | - # Revdeps -## Couldn't check (7) - -|package |version |error |warning |note | -|:------------------------------------------|:-------|:-----|:-------|:----| -|[CEMiTool](problems.md#cemitool) |1.4.2 |1 | | | -|[ClassifyR](problems.md#classifyr) |2.0.10 |2 | |2 | -|[FindMyFriends](problems.md#findmyfriends) |1.10.0 |1 |1 |2 | -|[Hmisc](problems.md#hmisc) |4.2-0 |1 | | | -|[spikeSlabGAM](problems.md#spikeslabgam) |1.1-14 |1 | | | -|[telefit](problems.md#telefit) |1.0.1 |1 | | | -|[trelliscopejs](problems.md#trelliscopejs) |0.1.18 |1 | | | - -## Broken (1) - -|package |version |error |warning |note | -|:----------------------|:-------|:-----|:-------|:----| -|[egg](problems.md#egg) |0.4.2 | |__+1__ | | - -## All (68) +## Failed to check (3) -|package |version |error |warning |note | -|:------------------------------------------------------------------|:-------|:-----|:-------|:----| -|[amplican](problems.md#amplican) |1.2.1 | |1 |2 | -|assignPOP |1.1.4 | | | | -|[bea.R](problems.md#bear) |1.0.6 | |1 |1 | -|[behaviorchange](problems.md#behaviorchange) |0.1.0 | | |1 | -|[BloodCancerMultiOmics2017](problems.md#bloodcancermultiomics2017) |1.0.2 | |1 |3 | -|BoutrosLab.plotting.general |5.9.2 | | | | -|braidReports |0.5.3 | | | | -|[BubbleTree](problems.md#bubbletree) |2.10.0 | |1 |2 | -|[CEMiTool](problems.md#cemitool) |1.4.2 |1 | | | -|[ClassifyR](problems.md#classifyr) |2.0.10 |2 | |2 | -|[condformat](problems.md#condformat) |0.8.0 |1 | |1 | -|cowplot |0.9.4 | | | | -|cr17 |0.1.0 | | | | -|darksky |1.3.0 | | | | -|dotwhisker |0.5.0 | | | | -|[egg](problems.md#egg) |0.4.2 | |__+1__ | | -|[FindMyFriends](problems.md#findmyfriends) |1.10.0 |1 |1 |2 | -|[GenVisR](problems.md#genvisr) |1.12.1 |2 |1 |4 | -|[geofacet](problems.md#geofacet) |0.1.10 | | |1 | -|getmstatistic |0.2.0 | | | | -|GGally |1.4.0 | | | | -|[ggalt](problems.md#ggalt) |0.4.0 | | |1 | -|[ggbio](problems.md#ggbio) |1.28.5 |1 |1 |3 | -|[ggExtra](problems.md#ggextra) |0.8 | | |1 | -|ggforce |0.2.1 | | | | -|[ggplot2](problems.md#ggplot2) |3.1.0 | | |1 | -|[ggpol](problems.md#ggpol) |0.0.5 | | |1 | -|[ggpubr](problems.md#ggpubr) |0.2 | | |1 | -|ggraph |1.0.2 | | | | -|[ggtern](problems.md#ggtern) |3.1.0 | | |1 | -|ggupset |0.1.0 | | | | -|[GOsummaries](problems.md#gosummaries) |2.16.1 | |1 |3 | -|gridExtra |2.3 | | | | -|[hierarchicalSets](problems.md#hierarchicalsets) |1.0.2 | | |1 | -|[Hmisc](problems.md#hmisc) |4.2-0 |1 | | | -|[IWTomics](problems.md#iwtomics) |1.4.0 | |1 | | -|lemon |0.4.3 | | | | -|[mafs](problems.md#mafs) |0.0.3 | | |1 | -|[metaforest](problems.md#metaforest) |0.1.2 | |1 | | -|metaplot |0.8.2 | | | | -|[metR](problems.md#metr) |0.3.0 | | |1 | -|[mimager](problems.md#mimager) |1.4.0 | |1 |1 | -|[MultiMeta](problems.md#multimeta) |0.1 | | |1 | -|multipanelfigure |2.0.2 | | | | -|[ncappc](problems.md#ncappc) |0.3.0 | | |1 | -|nlirms |3.4.4 | | | | -|nmathresh |0.1.4 | | | | -|oddsratio |1.0.3 | | | | -|pander |0.6.3 | | | | -|[patternplot](problems.md#patternplot) |0.2.1 | | |1 | -|pheatmap |1.0.12 | | | | -|Plasmidprofiler |0.1.6 | | | | -|[PTXQC](problems.md#ptxqc) |0.92.5 | | |1 | -|[RAM](problems.md#ram) |1.2.1.7 | |1 | | -|[spikeSlabGAM](problems.md#spikeslabgam) |1.1-14 |1 | | | -|[strvalidator](problems.md#strvalidator) |2.1.0 |1 | | | -|sugrrants |0.2.3 | | | | -|superheat |0.1.0 | | | | -|[tcR](problems.md#tcr) |2.2.3 | |1 |1 | -|[telefit](problems.md#telefit) |1.0.1 |1 | | | -|timelineR |0.1.0 | | | | -|[trackeR](problems.md#tracker) |1.4 | | |1 | -|treeDA |0.0.4 | | | | -|[trelliscopejs](problems.md#trelliscopejs) |0.1.18 |1 | | | -|TRONCO |2.12.0 | | | | -|[ufs](problems.md#ufs) |0.2.0 | | |2 | -|userfriendlyscience |0.7.2 | | | | -|waffle |0.7.0 | | | | +|package |version |error |warning |note | +|:-----------|:-------|:-----|:-------|:----| +|ggPMX |? | | | | +|loon.ggplot |? | | | | +|tidySEM |? | | | | diff --git a/revdep/cran.md b/revdep/cran.md new file mode 100644 index 0000000..1d05b50 --- /dev/null +++ b/revdep/cran.md @@ -0,0 +1,14 @@ +## revdepcheck results + +We checked 91 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package. + + * We saw 0 new problems + * We failed to check 3 packages + +Issues with CRAN packages are summarised below. + +### Failed to check + +* ggPMX (NA) +* loon.ggplot (NA) +* tidySEM (NA) diff --git a/revdep/failures.md b/revdep/failures.md new file mode 100644 index 0000000..2e21562 --- /dev/null +++ b/revdep/failures.md @@ -0,0 +1,224 @@ +# ggPMX + +
+ +* Version: 1.2.8 +* GitHub: https://github.com/ggPMXdevelopment/ggPMX +* Source code: https://github.com/cran/ggPMX +* Date/Publication: 2022-06-17 23:10:02 UTC +* Number of recursive dependencies: 174 + +Run `cloud_details(, "ggPMX")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/ggPMX/new/ggPMX.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ggPMX/DESCRIPTION’ ... OK +* this is package ‘ggPMX’ version ‘1.2.8’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... NOTE +... + [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 2 NOTEs + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/ggPMX/old/ggPMX.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘ggPMX/DESCRIPTION’ ... OK +* this is package ‘ggPMX’ version ‘1.2.8’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... NOTE +... + [ FAIL 1 | WARN 14 | SKIP 8 | PASS 327 ] + Error: Test failures + Execution halted +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘ggPMX-guide.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 ERROR, 2 NOTEs + + + + + +``` +# loon.ggplot + +
+ +* Version: 1.3.3 +* GitHub: https://github.com/great-northern-diver/loon.ggplot +* Source code: https://github.com/cran/loon.ggplot +* Date/Publication: 2022-11-12 22:30:02 UTC +* Number of recursive dependencies: 104 + +Run `cloud_details(, "loon.ggplot")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/loon.ggplot/new/loon.ggplot.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘loon.ggplot’ version ‘1.3.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘loon’ + +Package suggested but not available for checking: ‘zenplots’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/loon.ggplot/old/loon.ggplot.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘loon.ggplot/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘loon.ggplot’ version ‘1.3.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Package required but not available: ‘loon’ + +Package suggested but not available for checking: ‘zenplots’ + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# tidySEM + +
+ +* Version: 0.2.3 +* GitHub: https://github.com/cjvanlissa/tidySEM +* Source code: https://github.com/cran/tidySEM +* Date/Publication: 2022-04-14 17:50:02 UTC +* Number of recursive dependencies: 171 + +Run `cloud_details(, "tidySEM")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/tidySEM/new/tidySEM.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tidySEM/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘tidySEM’ version ‘0.2.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK + ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK + ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK + ‘sem_graph.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/tidySEM/old/tidySEM.Rcheck’ +* using R version 4.1.1 (2021-08-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using option ‘--no-manual’ +* checking for file ‘tidySEM/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘tidySEM’ version ‘0.2.3’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... +* checking for unstated dependencies in vignettes ... OK +* checking package vignettes in ‘inst/doc’ ... OK +* checking running R code from vignettes ... NONE + ‘Generating_syntax.Rmd’ using ‘UTF-8’... OK + ‘Plotting_graphs.Rmd’ using ‘UTF-8’... OK + ‘Tabulating_results.Rmd’ using ‘UTF-8’... OK + ‘sem_graph.Rmd’ using ‘UTF-8’... OK +* checking re-building of vignette outputs ... OK +* DONE +Status: 1 NOTE + + + + + +``` diff --git a/revdep/problems.md b/revdep/problems.md index 72a450f..9a20736 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,3231 +1 @@ -# amplican - -Version: 1.2.1 - -## In both - -* checking whether package ‘amplican’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: package ‘data.table’ was built under R version 3.5.2 - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/amplican/new/amplican.Rcheck/00install.out’ for details. - ``` - -* checking installed package size ... NOTE - ``` - installed size is 13.3Mb - sub-directories of 1Mb or more: - doc 12.5Mb - ``` - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘CrispRVariants’ - ``` - -# bea.R - -Version: 1.0.6 - -## In both - -* checking whether package ‘bea.R’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: package ‘data.table’ was built under R version 3.5.2 - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/bea.R/new/bea.R.Rcheck/00install.out’ for details. - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘Rcpp’ ‘chron’ ‘colorspace’ ‘gtable’ ‘htmltools’ ‘htmlwidgets’ - ‘httpuv’ ‘magrittr’ ‘munsell’ ‘plyr’ ‘scales’ ‘stringi’ ‘xtable’ - ‘yaml’ - All declared Imports should be used. - ``` - -# behaviorchange - -Version: 0.1.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘magrittr’ ‘methods’ - All declared Imports should be used. - ``` - -# BloodCancerMultiOmics2017 - -Version: 1.0.2 - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - ... - - The following objects are masked from 'package:IRanges': - - intersect, setdiff, union - - The following objects are masked from 'package:S4Vectors': - - intersect, setdiff, union - - The following objects are masked from 'package:BiocGenerics': - - intersect, setdiff, union - - The following objects are masked from 'package:base': - - intersect, setdiff, union - - Quitting from lines 46-92 (BloodCancerMultiOmics2017.Rmd) - Error: processing vignette 'BloodCancerMultiOmics2017.Rmd' failed with diagnostics: - there is no package called 'org.Hs.eg.db' - Execution halted - ``` - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘org.Hs.eg.db’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 115.3Mb - sub-directories of 1Mb or more: - data 80.0Mb - doc 26.5Mb - extdata 8.5Mb - ``` - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘vsn’ - ``` - -# BubbleTree - -Version: 2.10.0 - -## In both - -* checking whether package ‘BubbleTree’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: package ‘dplyr’ was built under R version 3.5.2 - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/BubbleTree/new/BubbleTree.Rcheck/00install.out’ for details. - ``` - -* checking installed package size ... NOTE - ``` - installed size is 29.2Mb - sub-directories of 1Mb or more: - data 23.4Mb - doc 5.3Mb - ``` - -* checking R code for possible problems ... NOTE - ``` - annoByOverlap,Annotate: no visible binding for global variable - 'queryHits' - Undefined global functions or variables: - queryHits - ``` - -# CEMiTool - -Version: 1.4.2 - -## In both - -* checking whether package ‘CEMiTool’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/CEMiTool/new/CEMiTool.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘CEMiTool’ ... -** R -** data -*** moving datasets to lazyload DB -** exec -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘GO.db’ -ERROR: lazy loading failed for package ‘CEMiTool’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/CEMiTool/new/CEMiTool.Rcheck/CEMiTool’ - -``` -### CRAN - -``` -* installing *source* package ‘CEMiTool’ ... -** R -** data -*** moving datasets to lazyload DB -** exec -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : - there is no package called ‘GO.db’ -ERROR: lazy loading failed for package ‘CEMiTool’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/CEMiTool/old/CEMiTool.Rcheck/CEMiTool’ - -``` -# ClassifyR - -Version: 2.0.10 - -## In both - -* checking examples ... ERROR - ``` - ... - + head(tunedParameters(classified)) - + performance(classified) - + } - Loading required package: glmnet - Loading required package: Matrix - Warning: package ‘Matrix’ was built under R version 3.5.2 - - Attaching package: ‘Matrix’ - - The following object is masked from ‘package:S4Vectors’: - - expand - - Loading required package: foreach - Loaded glmnet 2.0-16 - - Error: All cross-validations had an error. - Error in (function (classes, fdef, mtable) : - unable to find an inherited method for function ‘calcCVperformance’ for signature ‘"list"’ - Calls: calcCVperformance -> - Execution halted - ``` - -* R CMD check timed out - - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: - ‘parathyroidSE’ ‘mnlogit’ - ``` - -* checking R code for possible problems ... NOTE - ``` - .posterior_probs : : no visible global function definition - for ‘dmvnorm’ - plotFeatureClasses,DataFrame : : no visible binding for - global variable ‘measurement’ - plotFeatureClasses,DataFrame : : no visible binding for - global variable ‘..density..’ - plotFeatureClasses,DataFrame : : no visible binding for - global variable ‘legends grouping’ - samplesMetricMap,list: no visible binding for global variable ‘Class’ - samplesMetricMap,list: no visible binding for global variable ‘name’ - samplesMetricMap,list: no visible binding for global variable ‘type’ - samplesMetricMap,list: no visible binding for global variable ‘Metric’ - selectionPlot,list: no visible binding for global variable ‘Freq’ - Undefined global functions or variables: - ..density.. Class Freq Metric dmvnorm legends grouping measurement - name type - Consider adding - importFrom("base", "grouping") - to your NAMESPACE file. - ``` - -# condformat - -Version: 0.8.0 - -## In both - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - > library(condformat) - > - > test_check("condformat") - -- 1. Error: condformat2excel generates a file (@test_rendering.R#42)  -------------------------------------------------------- - Please install the xlsx package in order to export to excel - 1: condformat2excel(condformat(head(iris, n = rows_to_write)), filename = filename) at testthat/test_rendering.R:42 - 2: require_xlsx() - 3: stop("Please install the xlsx package in order to export to excel") - - == testthat results ========================================================================================================== - OK: 125 SKIPPED: 0 FAILED: 1 - 1. Error: condformat2excel generates a file (@test_rendering.R#42) - - Error: testthat unit tests failed - Execution halted - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘graphics’ - All declared Imports should be used. - ``` - -# egg - -Version: 0.4.2 - -## Newly broken - -* checking re-building of vignette outputs ... WARNING - ``` - Error in re-building vignettes: - ... - Loading required package: ggplot2 - `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bin()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`. - `stat_bindot()` using `bins = 30`. Pick better value with `binwidth`. - Quitting from lines 291-298 (Ecosystem.Rmd) - Error: processing vignette 'Ecosystem.Rmd' failed with diagnostics: - invalid 'clip' value - Execution halted - ``` - -# FindMyFriends - -Version: 1.10.0 - -## In both - -* R CMD check timed out - - -* checking for code/documentation mismatches ... WARNING - ``` - Functions or methods with usage in documentation object 'pgVirtual-class' but not in code: - as - ``` - -* checking installed package size ... NOTE - ``` - installed size is 5.0Mb - sub-directories of 1Mb or more: - R 1.0Mb - doc 1.5Mb - extdata 1.8Mb - ``` - -* checking dependencies in R code ... NOTE - ``` - Unexported objects imported by ':::' calls: - ‘gtable:::insert.unit’ ‘gtable:::z_arrange_gtables’ - See the note in ?`:::` about the use of this operator. - ``` - -# GenVisR - -Version: 1.12.1 - -## In both - -* checking examples ... ERROR - ``` - Running examples in ‘GenVisR-Ex.R’ failed - The error most likely occurred in: - - > ### Name: Lolliplot-class - > ### Title: Class Lolliplot - > ### Aliases: Lolliplot-class Lolliplot - > - > ### ** Examples - > - > # Load a pre-existing data set - > dataset <- PIK3CA - > - > # mode 1, amino acid changes are not present - > - > library(TxDb.Hsapiens.UCSC.hg38.knownGene) - Error in library(TxDb.Hsapiens.UCSC.hg38.knownGene) : - there is no package called ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ - Execution halted - ``` - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ── 3. Error: (unknown) (@test-genCov_qual.R#1)  ─────────────────────────────────────────────────────────────────────────────── - there is no package called 'BSgenome.Hsapiens.UCSC.hg19' - 1: suppressPackageStartupMessages(library(BSgenome.Hsapiens.UCSC.hg19)) at testthat/test-genCov_qual.R:1 - 2: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage")) - 3: library(BSgenome.Hsapiens.UCSC.hg19) - 4: stop(txt, domain = NA) - - ══ testthat results ══════════════════════════════════════════════════════════════════════════════════════════════════════════ - OK: 454 SKIPPED: 35 FAILED: 3 - 1. Error: (unknown) (@test-Lolliplot-class.R#3) - 2. Error: (unknown) (@test-VEP-class.R#306) - 3. Error: (unknown) (@test-genCov_qual.R#1) - - Error: testthat unit tests failed - Execution halted - ``` - -* checking re-building of vignette outputs ... WARNING - ``` - ... - This function is part of the new S4 feature and is under active development - This function is part of the new S4 feature and is under active development - Warning in .local(object, labelColumn, verbose, ...) : - Removed 1212 rows from the data which harbored duplicate genomic locations - Warning in .local(object, labelColumn, verbose, ...) : - Removed 1212 rows from the data which harbored duplicate genomic locations - Warning in has_utility("convert", "ImageMagick") : - ImageMagick not installed or not in PATH - Warning in .local(object, labelColumn, verbose, ...) : - Removed 1212 rows from the data which harbored duplicate genomic locations - Warning in .local(object, labelColumn, verbose, ...) : - Removed 1212 rows from the data which harbored duplicate genomic locations - Warning: package 'data.table' was built under R version 3.5.2 - Warning in setMutationHierarchy(object, mutationHierarchy, verbose) : - The following mutations were found in the input however were not specified in the mutationHierarchy! upstream_gene_variant, splice_region_variant,non_coding_transcript_exon_variant, intron_variant,non_coding_transcript_variant, downstream_gene_variant, non_coding_transcript_exon_variant, 5_prime_UTR_variant, intron_variant, stop_lost, regulatory_region_variant, 3_prime_UTR_variant, intron_variant,NMD_transcript_variant, missense_variant,NMD_transcript_variant, inframe_insertion, inframe_deletion, frameshift_variant, 3_prime_UTR_variant,NMD_transcript_variant, splice_acceptor_variant,non_coding_transcript_variant, missense_variant,splice_region_variant,NMD_transcript_variant, synonymous_variant, synonymous_variant,NMD_transcript_variant, splice_donor_variant,non_coding_transcript_variant, start_lost, stop_gained,NMD_transcript_variant, 5_prime_UTR_variant,NMD_transcript_variant adding these in as least important and assigning random colors! - Warning in .local(object, labelColumn, verbose, ...) : - Removed 1212 rows from the data which harbored duplicate genomic locations - Quitting from lines 224-233 (Upcoming_Features.Rmd) - Error: processing vignette 'Upcoming_Features.Rmd' failed with diagnostics: - there is no package called 'BSgenome.Hsapiens.UCSC.hg19' - Execution halted - ``` - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: - ‘BSgenome.Hsapiens.UCSC.hg19’ ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ - ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ ‘BSgenome.Hsapiens.UCSC.hg38’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 14.0Mb - sub-directories of 1Mb or more: - doc 11.5Mb - extdata 1.0Mb - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘reshape2’ - All declared Imports should be used. - ``` - -* checking R code for possible problems ... NOTE - ``` - setTierTwo,data.table : a: no visible binding for global variable ‘tmp’ - toLolliplot,GMS: no visible binding for global variable ‘missingINdex’ - toLolliplot,VEP: no visible binding for global variable ‘missingINdex’ - Undefined global functions or variables: - missingINdex tmp - ``` - -# geofacet - -Version: 0.1.10 - -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 217 marked UTF-8 strings - ``` - -# ggalt - -Version: 0.4.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘plotly’ - All declared Imports should be used. - ``` - -# ggbio - -Version: 1.28.5 - -## In both - -* checking examples ... ERROR - ``` - ... - > ################################################### - > p1 <- autoplot(xRleList, stat = "identity") - > p2 <- autoplot(xRleList, stat = "identity", geom = "point", color = "red") - > tracks('line' = p1, "point" = p2) - > - > - > ################################################### - > ### code chunk number 25: rlel-slice - > ################################################### - > p1 <- autoplot(xRleList, type = "viewMaxs", stat = "slice", lower = 5) - > p2 <- autoplot(xRleList, type = "viewMaxs", stat = "slice", lower = 5, geom = "heatmap") - > tracks('bar' = p1, "heatmap" = p2) - > - > - > ################################################### - > ### code chunk number 26: txdb - > ################################################### - > library(TxDb.Hsapiens.UCSC.hg19.knownGene) - Error in library(TxDb.Hsapiens.UCSC.hg19.knownGene) : - there is no package called 'TxDb.Hsapiens.UCSC.hg19.knownGene' - Execution halted - ``` - -* checking re-building of vignette outputs ... WARNING - ``` - ... - expand.grid - - Loading required package: IRanges - Loading required package: GenomeInfoDb - ordinary text without R code - - label: unnamed-chunk-5 - Quitting from lines 143-157 (ggbio.Rnw) - Error in library(Homo.sapiens) : - there is no package called 'Homo.sapiens' - Calls: knit2pdf ... withCallingHandlers -> withVisible -> eval -> eval -> library - In addition: Warning messages: - 1: `panel.margin` is deprecated. Please use `panel.spacing` property instead - 2: `panel.margin` is deprecated. Please use `panel.spacing` property instead - 3: `panel.margin` is deprecated. Please use `panel.spacing` property instead - 4: `panel.margin` is deprecated. Please use `panel.spacing` property instead - Execution halted - make: *** [ggbio.pdf] Error 1 - Error in buildVignettes(dir = "/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/ggbio/new/ggbio.Rcheck/vign_test/ggbio") : - running 'make' failed - Execution halted - ``` - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: - ‘BSgenome.Hsapiens.UCSC.hg19’ ‘Homo.sapiens’ - ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ - ‘TxDb.Mmusculus.UCSC.mm9.knownGene’ ‘EnsDb.Hsapiens.v75’ - ``` - -* checking dependencies in R code ... NOTE - ``` - ':::' call which should be '::': 'ggplot2:::set_last_plot' - See the note in ?`:::` about the use of this operator. - Unexported objects imported by ':::' calls: - 'S4Vectors:::top_prenv' 'ggplot2:::add_ggplot' 'ggplot2:::cunion' - 'ggplot2:::rename_aes' 'ggplot2:::rescale01' - See the note in ?`:::` about the use of this operator. - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - layout_karyogram,GRanges: no visible binding for global variable 'xend' - layout_karyogram,GRanges: no visible binding for global variable 'yend' - layout_karyogram,GRanges: no visible binding for global variable 'y2' - layout_karyogram,GRanges: no visible binding for global variable - 'yend2' - layout_karyogram,GRanges: no visible binding for global variable 'name' - plotFragLength,character-GRanges: no visible binding for global - variable '.fragLength' - plotSpliceSum,character-EnsDb: possible error in GRangesFilter(which, - condition = "overlapping"): unused argument (condition = - "overlapping") - stat_mismatch,GRanges: no visible binding for global variable 'sts' - stat_mismatch,GRanges: no visible binding for global variable 'eds' - stat_mismatch,GRanges: no visible binding for global variable 'read' - Undefined global functions or variables: - .fragLength .layout_circle.stats .x breaks coefs data eds fe fl - gieStain ideoCyto indexProbesProcessed midpoint mt name read se - stepping sts value variable x xend y y.text y2 yend yend2 - Consider adding - importFrom("utils", "data") - to your NAMESPACE file. - ``` - -# ggExtra - -Version: 0.8 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘grDevices’ - All declared Imports should be used. - ``` - -# ggplot2 - -Version: 3.1.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘mgcv’ ‘reshape2’ ‘viridisLite’ - All declared Imports should be used. - ``` - -# ggpol - -Version: 0.0.5 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘dplyr’ ‘grDevices’ - All declared Imports should be used. - ``` - -# ggpubr - -Version: 0.2 - -## In both - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘FactoMineR’ - ``` - -# ggtern - -Version: 3.1.0 - -## In both - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘chemometrics’ - ``` - -# GOsummaries - -Version: 2.16.1 - -## In both - -* checking running R code from vignettes ... - ``` - ‘GOsummaries-basics.Rnw’ ... failed - WARNING - Errors in running code in vignettes: - when running code in ‘GOsummaries-basics.Rnw’ - ... - - > BiocStyle::latex() - - When sourcing ‘GOsummaries-basics.R’: - Error: there is no package called ‘BiocStyle’ - Execution halted - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - panel_boxplot: no visible binding for global variable ‘x’ - panel_boxplot: no visible binding for global variable ‘y’ - panel_boxplot: no visible binding for global variable ‘Class’ - panel_dummy: no visible binding for global variable ‘y’ - panel_dummy: no visible binding for global variable ‘x’ - plotWordcloud: no visible global function definition for - ‘colorRampPalette’ - plotWordcloud: no visible global function definition for ‘runif’ - plot_motor: no visible global function definition for ‘dev.off’ - print.gosummaries: no visible global function definition for ‘head’ - pspearman: no visible global function definition for ‘pt’ - spearman_mds: no visible global function definition for ‘cor’ - Undefined global functions or variables: - Class bmp boxplot.stats colorRampPalette cor dev.off head jpeg - packageVersion pdf png pt runif tiff x y - Consider adding - importFrom("grDevices", "bmp", "boxplot.stats", "colorRampPalette", - "dev.off", "jpeg", "pdf", "png", "tiff") - importFrom("stats", "cor", "pt", "runif") - importFrom("utils", "head", "packageVersion") - to your NAMESPACE file. - ``` - -* checking for unstated dependencies in vignettes ... NOTE - ``` - '::' or ':::' import not declared from: ‘BiocStyle’ - ``` - -* checking re-building of vignette outputs ... NOTE - ``` - Error in re-building vignettes: - ... - - Error: processing vignette 'GOsummaries-basics.Rnw' failed with diagnostics: - chunk 1 (label = style-Sweave) - Error in loadNamespace(name) : there is no package called ‘BiocStyle’ - Execution halted - ``` - -# hierarchicalSets - -Version: 1.0.2 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Unexported objects imported by ':::' calls: - ‘ggplot2:::build_guides’ ‘ggplot2:::guide_axis’ - ‘ggplot2:::scales_list’ - See the note in ?`:::` about the use of this operator. - ``` - -# Hmisc - -Version: 4.2-0 - -## In both - -* checking whether package ‘Hmisc’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/Hmisc/new/Hmisc.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘Hmisc’ ... -** package ‘Hmisc’ successfully unpacked and MD5 sums checked -** libs -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Hmisc.c -o Hmisc.o -gfortran -fPIC -g -O2 -c cidxcn.f -o cidxcn.o -gfortran -fPIC -g -O2 -c cidxcp.f -o cidxcp.o -gfortran -fPIC -g -O2 -c hoeffd.f -o hoeffd.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o -gfortran -fPIC -g -O2 -c jacklins.f -o jacklins.o -gfortran -fPIC -g -O2 -c largrec.f -o largrec.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mChoice.c -o mChoice.o -gfortran -fPIC -g -O2 -c maxempr.f -o maxempr.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c nstr.c -o nstr.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ranksort.c -o ranksort.o -gfortran -fPIC -g -O2 -c rcorr.f -o rcorr.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c string_box.c -o string_box.o -gfortran -fPIC -g -O2 -c wclosest.f -o wclosest.o -clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [Hmisc.so] Error 1 -ERROR: compilation failed for package ‘Hmisc’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/Hmisc/new/Hmisc.Rcheck/Hmisc’ - -``` -### CRAN - -``` -* installing *source* package ‘Hmisc’ ... -** package ‘Hmisc’ successfully unpacked and MD5 sums checked -** libs -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Hmisc.c -o Hmisc.o -gfortran -fPIC -g -O2 -c cidxcn.f -o cidxcn.o -gfortran -fPIC -g -O2 -c cidxcp.f -o cidxcp.o -gfortran -fPIC -g -O2 -c hoeffd.f -o hoeffd.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o -gfortran -fPIC -g -O2 -c jacklins.f -o jacklins.o -gfortran -fPIC -g -O2 -c largrec.f -o largrec.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c mChoice.c -o mChoice.o -gfortran -fPIC -g -O2 -c maxempr.f -o maxempr.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c nstr.c -o nstr.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ranksort.c -o ranksort.o -gfortran -fPIC -g -O2 -c rcorr.f -o rcorr.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c string_box.c -o string_box.o -gfortran -fPIC -g -O2 -c wclosest.f -o wclosest.o -clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Hmisc.so Hmisc.o cidxcn.o cidxcp.o hoeffd.o init.o jacklins.o largrec.o mChoice.o maxempr.o nstr.o ranksort.o rcorr.o string_box.o wclosest.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [Hmisc.so] Error 1 -ERROR: compilation failed for package ‘Hmisc’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/Hmisc/old/Hmisc.Rcheck/Hmisc’ - -``` -# IWTomics - -Version: 1.4.0 - -## In both - -* checking data for ASCII and uncompressed saves ... WARNING - ``` - Warning: package needs dependence on R (>= 2.10) - ``` - -# mafs - -Version: 0.0.3 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘Rcpp’ ‘cmprsk’ ‘colorspace’ ‘etm’ ‘fracdiff’ ‘gtable’ ‘munsell’ - ‘numDeriv’ ‘plyr’ ‘quadprog’ ‘scales’ ‘timeDate’ ‘tseries’ ‘zoo’ - All declared Imports should be used. - ``` - -# metaforest - -Version: 0.1.2 - -## In both - -* checking whether package ‘metaforest’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: package ‘Matrix’ was built under R version 3.5.2 - Warning: package ‘ranger’ was built under R version 3.5.2 - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/metaforest/new/metaforest.Rcheck/00install.out’ for details. - ``` - -# metR - -Version: 0.3.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘curl’ - All declared Imports should be used. - ``` - -# mimager - -Version: 1.4.0 - -## In both - -* checking re-building of vignette outputs ... WARNING - ``` - ... - - The following objects are masked from 'package:base': - - Filter, Find, Map, Position, Reduce, anyDuplicated, append, - as.data.frame, basename, cbind, colMeans, colSums, colnames, - dirname, do.call, duplicated, eval, evalq, get, grep, grepl, - intersect, is.unsorted, lapply, lengths, mapply, match, mget, - order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, - rowMeans, rowSums, rownames, sapply, setdiff, sort, table, - tapply, union, unique, unsplit, which, which.max, which.min - - Welcome to Bioconductor - - Vignettes contain introductory material; view with - 'browseVignettes()'. To cite Bioconductor, see - 'citation("Biobase")', and for packages 'citation("pkgname")'. - - Quitting from lines 38-41 (introduction.Rmd) - Error: processing vignette 'introduction.Rmd' failed with diagnostics: - there is no package called 'affydata' - Execution halted - ``` - -* checking package dependencies ... NOTE - ``` - Packages suggested but not available for checking: - ‘affydata’ ‘oligoData’ ‘pd.hugene.1.0.st.v1’ - ``` - -# MultiMeta - -Version: 0.1 - -## In both - -* checking R code for possible problems ... NOTE - ``` - ... - multi_meta: no visible global function definition for ‘write.table’ - multi_meta: no visible global function definition for ‘read.table’ - multi_meta: no visible global function definition for ‘pchisq’ - qqplotter: no visible global function definition for ‘read.table’ - qqplotter: no visible global function definition for ‘qchisq’ - qqplotter: no visible global function definition for ‘ppoints’ - qqplotter: no visible global function definition for ‘median’ - qqplotter: no visible global function definition for ‘pchisq’ - qqplotter: no visible global function definition for ‘pdf’ - qqplotter: no visible global function definition for ‘plot’ - qqplotter: no visible global function definition for ‘abline’ - qqplotter: no visible global function definition for ‘dev.off’ - Undefined global functions or variables: - abline axis colorRampPalette cov2cor dev.off median pchisq pdf plot - points ppoints qchisq read.table write.table - Consider adding - importFrom("grDevices", "colorRampPalette", "dev.off", "pdf") - importFrom("graphics", "abline", "axis", "plot", "points") - importFrom("stats", "cov2cor", "median", "pchisq", "ppoints", "qchisq") - importFrom("utils", "read.table", "write.table") - to your NAMESPACE file. - ``` - -# ncappc - -Version: 0.3.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘bookdown’ - All declared Imports should be used. - ``` - -# patternplot - -Version: 0.2.1 - -## In both - -* checking for GNU extensions in Makefiles ... NOTE - ``` - GNU make is a SystemRequirements. - ``` - -# PTXQC - -Version: 0.92.5 - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 8.3Mb - sub-directories of 1Mb or more: - doc 4.6Mb - examples 2.5Mb - ``` - -# RAM - -Version: 1.2.1.7 - -## In both - -* checking whether package ‘RAM’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: package ‘vegan’ was built under R version 3.5.2 - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/RAM/new/RAM.Rcheck/00install.out’ for details. - ``` - -# spikeSlabGAM - -Version: 1.1-14 - -## In both - -* checking whether package ‘spikeSlabGAM’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/spikeSlabGAM/new/spikeSlabGAM.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘spikeSlabGAM’ ... -** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked -** libs -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sampler.c -o sampler.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o -clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [spikeSlabGAM.so] Error 1 -ERROR: compilation failed for package ‘spikeSlabGAM’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/spikeSlabGAM/new/spikeSlabGAM.Rcheck/spikeSlabGAM’ - -``` -### CRAN - -``` -* installing *source* package ‘spikeSlabGAM’ ... -** package ‘spikeSlabGAM’ successfully unpacked and MD5 sums checked -** libs -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c sampler.c -o sampler.o -clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c spikeSlabGAM_init.c -o spikeSlabGAM_init.o -clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o spikeSlabGAM.so sampler.o spikeSlabGAM_init.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [spikeSlabGAM.so] Error 1 -ERROR: compilation failed for package ‘spikeSlabGAM’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/spikeSlabGAM/old/spikeSlabGAM.Rcheck/spikeSlabGAM’ - -``` -# strvalidator - -Version: 2.1.0 - -## In both - -* checking package dependencies ... ERROR - ``` - Packages required but not available: ‘gWidgets2RGtk2’ ‘RGtk2’ - - See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ - manual. - ``` - -# tcR - -Version: 2.2.3 - -## In both - -* checking whether package ‘tcR’ can be installed ... WARNING - ``` - Found the following significant warnings: - Warning: package ‘dplyr’ was built under R version 3.5.2 - Warning: package ‘igraph’ was built under R version 3.5.2 - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/tcR/new/tcR.Rcheck/00install.out’ for details. - ``` - -* checking installed package size ... NOTE - ``` - installed size is 6.1Mb - sub-directories of 1Mb or more: - data 1.4Mb - doc 3.9Mb - ``` - -# telefit - -Version: 1.0.1 - -## In both - -* checking whether package ‘telefit’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/telefit/new/telefit.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘telefit’ ... -** package ‘telefit’ successfully unpacked and MD5 sums checked -** libs -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c GibbsSampler.cpp -o GibbsSampler.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RWSampler.cpp -o RWSampler.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c covs.cpp -o covs.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c distributions.cpp -o distributions.o -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c glm_gmrf.cpp -o glm_gmrf.o -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mcstat.cpp -o mcstat.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c numAlg.cpp -o numAlg.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpglmmod.cpp -o stpglmmod.o -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpmod.cpp -o stpmod.o -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -stpmod.cpp:967:8: warning: unused variable 'ncats' [-Wunused-variable] - int ncats = cat_breaks.n_elem + 1; - ^ -stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field] - double CProposed_logdet, one, R; - ^ -19 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpnotation.cpp -o stpnotation.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcMod.cpp -o svcMod.o -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcPredict.cpp -o svcPredict.o -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c transformations.cpp -o transformations.o -clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [telefit.so] Error 1 -ERROR: compilation failed for package ‘telefit’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/telefit/new/telefit.Rcheck/telefit’ - -``` -### CRAN - -``` -* installing *source* package ‘telefit’ ... -** package ‘telefit’ successfully unpacked and MD5 sums checked -** libs -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c GibbsSampler.cpp -o GibbsSampler.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RWSampler.cpp -o RWSampler.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from RcppExports.cpp:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c covs.cpp -o covs.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c distributions.cpp -o distributions.o -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from distributions.cpp:1: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c glm_gmrf.cpp -o glm_gmrf.o -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from glm_gmrf.cpp:1: -In file included from ./glm_gmrf.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c mcstat.cpp -o mcstat.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c numAlg.cpp -o numAlg.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpglmmod.cpp -o stpglmmod.o -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpglmmod.cpp:9: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpmod.cpp -o stpmod.o -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from stpmod.cpp:4: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -stpmod.cpp:967:8: warning: unused variable 'ncats' [-Wunused-variable] - int ncats = cat_breaks.n_elem + 1; - ^ -stpmod.cpp:470:32: warning: private field 'R' is not used [-Wunused-private-field] - double CProposed_logdet, one, R; - ^ -19 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c stpnotation.cpp -o stpnotation.o -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcMod.cpp -o svcMod.o -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcMod.cpp:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c svcPredict.cpp -o svcPredict.o -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:1: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Core:535: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:2: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/LU:47: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:12: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Jacobi:29: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:3: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Cholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:4: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/QR:17: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Householder:27: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:5: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SVD:48: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:6: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Geometry:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:30: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Dense:7: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Eigenvalues:58: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:26: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCore:66: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:27: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/OrderingMethods:71: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:29: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseCholesky:43: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/SparseQR:35: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:31: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/Sparse:33: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/IterativeLinearSolvers:46: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:32: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/CholmodSupport:45: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:35: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:39: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/Polynomials:135: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -In file included from svcPredict.cpp:9: -In file included from ./distributions.h:8: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigen.h:25: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/RcppEigenForward.h:40: -In file included from /Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/SparseExtra:51: -/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include/unsupported/Eigen/../../Eigen/src/Core/util/ReenableStupidWarnings.h:10:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] - #pragma clang diagnostic pop - ^ -17 warnings generated. -clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/Rcpp/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppArmadillo/include" -I"/Users/thomas/Dropbox/GitHub/gtable/revdep/library.noindex/telefit/RcppEigen/include" -I/usr/local/include -fPIC -Wall -g -O2 -c transformations.cpp -o transformations.o -clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o telefit.so GibbsSampler.o RWSampler.o RcppExports.o covs.o distributions.o glm_gmrf.o mcstat.o numAlg.o stpglmmod.o stpmod.o stpnotation.o svcMod.o svcPredict.o transformations.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation -ld: warning: directory not found for option '-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0' -ld: warning: directory not found for option '-L/usr/local/gfortran/lib' -ld: library not found for -lgfortran -clang: error: linker command failed with exit code 1 (use -v to see invocation) -make: *** [telefit.so] Error 1 -ERROR: compilation failed for package ‘telefit’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/telefit/old/telefit.Rcheck/telefit’ - -``` -# trackeR - -Version: 1.4 - -## In both - -* checking installed package size ... NOTE - ``` - installed size is 13.9Mb - sub-directories of 1Mb or more: - data 2.1Mb - doc 2.7Mb - extdata 8.4Mb - ``` - -# trelliscopejs - -Version: 0.1.18 - -## In both - -* checking whether package ‘trelliscopejs’ can be installed ... ERROR - ``` - Installation failed. - See ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/trelliscopejs/new/trelliscopejs.Rcheck/00install.out’ for details. - ``` - -## Installation - -### Devel - -``` -* installing *source* package ‘trelliscopejs’ ... -** package ‘trelliscopejs’ successfully unpacked and MD5 sums checked -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘mclust’ -ERROR: lazy loading failed for package ‘trelliscopejs’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/trelliscopejs/new/trelliscopejs.Rcheck/trelliscopejs’ - -``` -### CRAN - -``` -* installing *source* package ‘trelliscopejs’ ... -** package ‘trelliscopejs’ successfully unpacked and MD5 sums checked -** R -** data -*** moving datasets to lazyload DB -** inst -** byte-compile and prepare package for lazy loading -Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : - there is no package called ‘mclust’ -ERROR: lazy loading failed for package ‘trelliscopejs’ -* removing ‘/Users/thomas/Dropbox/GitHub/gtable/revdep/checks.noindex/trelliscopejs/old/trelliscopejs.Rcheck/trelliscopejs’ - -``` -# ufs - -Version: 0.2.0 - -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘viridis’ - All declared Imports should be used. - ``` - -* checking Rd cross-references ... NOTE - ``` - Packages unavailable to check Rd xrefs: ‘userfriendlyscience’, ‘behaviorchange’, ‘MBESS’ - ``` - +*Wow, no problems at all. :)* \ No newline at end of file