diff --git a/_posts/2023-04-01-data-science.md b/_posts/2023-04-01-data-science.md new file mode 100644 index 0000000000..901f231beb --- /dev/null +++ b/_posts/2023-04-01-data-science.md @@ -0,0 +1,28 @@ +--- +layout: post +title: "Statitical analysis of Microbiomes" +author: "Andrea Telatin" +categories: events +tags: [events,statistics] +image: stat.jpg +--- + +## What + +How to use [**Benchdamic**](https://www.bioconductor.org/packages/release/bioc/html/benchdamic.html) +to analyse a microbiome dataset. + +## Who + +[Dr Matteo Calgaro](https://scholar.google.com/citations?user=6yCSQe8AAAAJ&hl=en) +is a bio statistician, who focussed his research on the development of statistical methods for the analysis of microbiome data. +During his PhD he evaluated the performance of different methods for the **normalization** of count tables (OTU Tables), +and then on methods for **differential abundance analysis**. + +He developed the [**Benchdamic**](https://www.bioconductor.org/packages/release/bioc/html/benchdamic.html) +package to assess which methods for differentiali abundance analyses perform better on a specific dataset. + +## Handsout + +* [Benchdamic tutorial at QIB](https://mcalgaro93.github.io/benchdamicWorkshop/articles/introduction_to_benchdamic.html) + diff --git a/_posts/2023-05-01-large-scale.md b/_posts/2023-05-01-large-scale.md new file mode 100644 index 0000000000..e9eae85917 --- /dev/null +++ b/_posts/2023-05-01-large-scale.md @@ -0,0 +1,14 @@ +--- +layout: post +title: "Large Scale Analysis of Microbial Genomes" +author: "Leonardo De Oliveira Martins" +categories: events +tags: [events,large-scale] +image: large.jpg +--- + +## What + +## Who + +## Handsout \ No newline at end of file diff --git a/assets/img/large.jpg b/assets/img/large.jpg new file mode 100644 index 0000000000..5fe5af476b Binary files /dev/null and b/assets/img/large.jpg differ diff --git a/assets/img/stat.jpg b/assets/img/stat.jpg new file mode 100644 index 0000000000..572603621b Binary files /dev/null and b/assets/img/stat.jpg differ diff --git a/pages/about.md b/pages/about.md index 0d797cb4f9..0157549355 100644 --- a/pages/about.md +++ b/pages/about.md @@ -10,13 +10,15 @@ This websites collects and share information about the training activities organ ## Calendar -| Date | Workshop | Info | -|------------|----------------------------|--------------------------------| -| 5 March | [Machine Learning]({{ site.baseurl }}{% post_url 2023-03-01-machine-learning %}): Seminar | [Intranet](https://intranet.nbi.ac.uk/infoserv/cgi-bin/calendar/default.asp?mid=0) | -| 7 March | [Machine Learning]({{ site.baseurl }}{% post_url 2023-03-01-machine-learning %}): Workshop | [Registration (intranet)](https://intranet.nbi.ac.uk/infoserv/cgi-bin/calendar/default.asp?mid=0) | -| April | Data Science | Come back for more details... | -| May | MetaPhlAn and HuMANN | Come back for more details... | -| June (1st week) | Anvi'o Workshop | Come back for more details... | +| Date | Workshop | Info | +|-----------------|--------------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------------| +| 5 March | [Machine Learning]({{ site.baseurl }}{% post_url 2023-03-01-machine-learning %}): Seminar | [Intranet](https://intranet.nbi.ac.uk/infoserv/cgi-bin/calendar/default.asp?mid=0) | +| 7 March | [Machine Learning]({{ site.baseurl }}{% post_url 2023-03-01-machine-learning %}): Workshop | [Intranet](https://intranet.nbi.ac.uk/infoserv/cgi-bin/calendar/default.asp?mid=0) | +| 18-20 March | [nf-core hackathon]({{ site.baseurl }}{% post_url 2023-03-01-nf-core %}) | [nf-co.re](https://nf-co.re/events/2024/hackathon-march-2024/uk-norwich) | +| 26 March | [Data Science]({{ site.baseurl }}{% post_url 2023-04-01-data-science %}) | [Intranet](https://intranet.nbi.ac.uk/infoserv/cgi-bin/calendar/default.asp?id=66081) | +| April | Data Science | Come back for more details... | +| May | MetaPhlAn and HuMANN | Come back for more details... | +| June (1st week) | Anvi'o Workshop | Come back for more details... | ## Topics