From cdf3f8f5e7f10479e9c5c7f8c9e476cb50c3f83b Mon Sep 17 00:00:00 2001 From: Andrew Page Date: Tue, 19 May 2020 16:30:23 +0100 Subject: [PATCH] update authors and remove duplicate salmonella --- AUTHORS | 1 + scagaire/data/species_to_genes.tsv | 182 ----------------------------- 2 files changed, 1 insertion(+), 182 deletions(-) diff --git a/AUTHORS b/AUTHORS index 5e9d848..c51ed68 100644 --- a/AUTHORS +++ b/AUTHORS @@ -1 +1,2 @@ Andrew J. Page +Thanh Le Viet diff --git a/scagaire/data/species_to_genes.tsv b/scagaire/data/species_to_genes.tsv index 9ff2560..20fdeca 100644 --- a/scagaire/data/species_to_genes.tsv +++ b/scagaire/data/species_to_genes.tsv @@ -2849,188 +2849,6 @@ Yersinia pestis yadA 330 abricate vfdb auto 20191029 Yersinia pestis pla 277 abricate vfdb auto 20191029 Yersinia pestis yopM 142 abricate vfdb auto 20191029 Yersinia pestis (Phe)catA1 1 abricate argannot auto 20191029 -Salmonella enterica mdsC 8108 abricate card auto 20191031 -Salmonella enterica mdsB 8087 abricate card auto 20191031 -Salmonella enterica mdsA 8159 abricate card auto 20191031 -Salmonella enterica golS 8184 abricate card auto 20191031 -Salmonella enterica AAC(6')-Iaa 2965 abricate card auto 20191031 -Salmonella enterica sdiA 10646 abricate card auto 20191031 -Salmonella enterica mdtK 10468 abricate card auto 20191031 -Salmonella enterica AAC(6')-Iy 7762 abricate card auto 20191031 -Salmonella enterica tet(A) 1175 abricate card auto 20191031 -Salmonella enterica catII_from_Escherichia_coli_K-12 44 abricate card auto 20191031 -Salmonella enterica TEM-1 888 abricate card auto 20191031 -Salmonella enterica APH(3')-Ia 502 abricate card auto 20191031 -Salmonella enterica dfrA12 169 abricate card auto 20191031 -Salmonella enterica aadA2 483 abricate card auto 20191031 -Salmonella enterica sul1 1672 abricate card auto 20191031 -Salmonella enterica sul3 176 abricate card auto 20191031 -Salmonella enterica cmlA1 98 abricate card auto 20191031 -Salmonella enterica CMY-59 520 abricate card auto 20191031 -Salmonella enterica floR 858 abricate card auto 20191031 -Salmonella enterica APH(6)-Id 1992 abricate card auto 20191031 -Salmonella enterica APH(3'')-Ib 1935 abricate card auto 20191031 -Salmonella enterica sul2 1852 abricate card auto 20191031 -Salmonella enterica ANT(3'')-IIa 364 abricate card auto 20191031 -Salmonella enterica AAC(3)-VIa 169 abricate card auto 20191031 -Salmonella enterica tet(B) 1380 abricate card auto 20191031 -Salmonella enterica FosA7 786 abricate card auto 20191031 -Salmonella enterica AAC(3)-IId 133 abricate card auto 20191031 -Salmonella enterica rmtC 2 abricate card auto 20191031 -Salmonella enterica dfrA1 139 abricate card auto 20191031 -Salmonella enterica dfrA14 157 abricate card auto 20191031 -Salmonella enterica Shigella_flexneri_chloramphenicol_acetyltransferase 897 abricate card auto 20191031 -Salmonella enterica TEM-135 793 abricate card auto 20191031 -Salmonella enterica OXA-1 101 abricate card auto 20191031 -Salmonella enterica APH(3')-IIa 78 abricate card auto 20191031 -Salmonella enterica APH(6)-Ic 57 abricate card auto 20191031 -Salmonella enterica CARB-3 390 abricate card auto 20191031 -Salmonella enterica aadA16 4 abricate card auto 20191031 -Salmonella enterica dfrA27 4 abricate card auto 20191031 -Salmonella enterica arr-3 91 abricate card auto 20191031 -Salmonella enterica QnrB17 2 abricate card auto 20191031 -Salmonella enterica TEM-127 4 abricate card auto 20191031 -Salmonella enterica aadA7 35 abricate card auto 20191031 -Salmonella enterica TEM-150 10 abricate card auto 20191031 -Salmonella enterica QnrS1 147 abricate card auto 20191031 -Salmonella enterica MCR-9 79 abricate card auto 20191031 -Salmonella enterica aadA5 69 abricate card auto 20191031 -Salmonella enterica dfrA17 67 abricate card auto 20191031 -Salmonella enterica AAC(6')-33 1 abricate card auto 20191031 -Salmonella enterica OXA-2 10 abricate card auto 20191031 -Salmonella enterica ANT(2'')-Ia 57 abricate card auto 20191031 -Salmonella enterica tet(D) 31 abricate card auto 20191031 -Salmonella enterica oqxB 96 abricate card auto 20191031 -Salmonella enterica oqxA 98 abricate card auto 20191031 -Salmonella enterica dfrA7 634 abricate card auto 20191031 -Salmonella enterica tet(C) 66 abricate card auto 20191031 -Salmonella enterica TEM-168 26 abricate card auto 20191031 -Salmonella enterica cmlA5 32 abricate card auto 20191031 -Salmonella enterica HERA-3 15 abricate card auto 20191031 -Salmonella enterica CTX-M-2 6 abricate card auto 20191031 -Salmonella enterica QnrB5 62 abricate card auto 20191031 -Salmonella enterica CMY-2 4 abricate card auto 20191031 -Salmonella enterica dfrA15 124 abricate card auto 20191031 -Salmonella enterica MCR-1 40 abricate card auto 20191031 -Salmonella enterica CTX-M-32 1 abricate card auto 20191031 -Salmonella enterica AAC(3)-IV 167 abricate card auto 20191031 -Salmonella enterica APH(4)-Ia 166 abricate card auto 20191031 -Salmonella enterica qacH 1 abricate card auto 20191031 -Salmonella enterica TEM-215 1 abricate card auto 20191031 -Salmonella enterica tetM 39 abricate card auto 20191031 -Salmonella enterica EreA2 1 abricate card auto 20191031 -Salmonella enterica dfrA5 11 abricate card auto 20191031 -Salmonella enterica TEM-214 25 abricate card auto 20191031 -Salmonella enterica lnuG 28 abricate card auto 20191031 -Salmonella enterica dfrI 1 abricate card auto 20191031 -Salmonella enterica AAC(6')-Ib7 9 abricate card auto 20191031 -Salmonella enterica SAT-1 42 abricate card auto 20191031 -Salmonella enterica QnrB20 21 abricate card auto 20191031 -Salmonella enterica dfrA19 30 abricate card auto 20191031 -Salmonella enterica AAC(6')-IIc 26 abricate card auto 20191031 -Salmonella enterica SHV-160 1 abricate card auto 20191031 -Salmonella enterica TEM-116 9 abricate card auto 20191031 -Salmonella enterica AAC(3)-IIe 23 abricate card auto 20191031 -Salmonella enterica TEM-154 1 abricate card auto 20191031 -Salmonella enterica mefB 10 abricate card auto 20191031 -Salmonella enterica catB2 1 abricate card auto 20191031 -Salmonella enterica mphE 47 abricate card auto 20191031 -Salmonella enterica msrE 47 abricate card auto 20191031 -Salmonella enterica VIM-1 4 abricate card auto 20191031 -Salmonella enterica dfrB1 1 abricate card auto 20191031 -Salmonella enterica mphA 107 abricate card auto 20191031 -Salmonella enterica cmlA6 2 abricate card auto 20191031 -Salmonella enterica rmtB 7 abricate card auto 20191031 -Salmonella enterica SHV-57 1 abricate card auto 20191031 -Salmonella enterica QnrD1 4 abricate card auto 20191031 -Salmonella enterica TEM-30 1 abricate card auto 20191031 -Salmonella enterica KPC-1 2 abricate card auto 20191031 -Salmonella enterica dfrA8 13 abricate card auto 20191031 -Salmonella enterica CTX-M-14 13 abricate card auto 20191031 -Salmonella enterica QnrA1 4 abricate card auto 20191031 -Salmonella enterica AAC(3)-Id 22 abricate card auto 20191031 -Salmonella enterica tetO 2 abricate card auto 20191031 -Salmonella enterica FOX-5 1 abricate card auto 20191031 -Salmonella enterica SHV-2A 2 abricate card auto 20191031 -Salmonella enterica QnrB69 2 abricate card auto 20191031 -Salmonella enterica FosA4 13 abricate card auto 20191031 -Salmonella enterica TEM-176 9 abricate card auto 20191031 -Salmonella enterica aadA15 1 abricate card auto 20191031 -Salmonella enterica CTX-M-8 6 abricate card auto 20191031 -Salmonella enterica qnrE1 14 abricate card auto 20191031 -Salmonella enterica dfrA25 7 abricate card auto 20191031 -Salmonella enterica OXA-4 7 abricate card auto 20191031 -Salmonella enterica QnrB4 5 abricate card auto 20191031 -Salmonella enterica DHA-6 3 abricate card auto 20191031 -Salmonella enterica MCR-5 3 abricate card auto 20191031 -Salmonella enterica catB3 86 abricate card auto 20191031 -Salmonella enterica NDM-9 1 abricate card auto 20191031 -Salmonella enterica determinant_of_bleomycin_resistance 8 abricate card auto 20191031 -Salmonella enterica FosA3 68 abricate card auto 20191031 -Salmonella enterica CTX-M-65 22 abricate card auto 20191031 -Salmonella enterica QnrS2 7 abricate card auto 20191031 -Salmonella enterica CTX-M-15 21 abricate card auto 20191031 -Salmonella enterica APH(3')-IIIa 2 abricate card auto 20191031 -Salmonella enterica AAC(3)-Ia 5 abricate card auto 20191031 -Salmonella enterica CTX-M-27 2 abricate card auto 20191031 -Salmonella enterica AAC(2')-IIa 8 abricate card auto 20191031 -Salmonella enterica QnrB44 3 abricate card auto 20191031 -Salmonella enterica SHV-134 25 abricate card auto 20191031 -Salmonella enterica CTX-M-55 59 abricate card auto 20191031 -Salmonella enterica linG 47 abricate card auto 20191031 -Salmonella enterica NDM-5 3 abricate card auto 20191031 -Salmonella enterica armA 46 abricate card auto 20191031 -Salmonella enterica VEB-5 1 abricate card auto 20191031 -Salmonella enterica dfrA10 2 abricate card auto 20191031 -Salmonella enterica TEM-206 2 abricate card auto 20191031 -Salmonella enterica TEM-155 1 abricate card auto 20191031 -Salmonella enterica TEM-79 1 abricate card auto 20191031 -Salmonella enterica TEM-104 1 abricate card auto 20191031 -Salmonella enterica TEM-57 5 abricate card auto 20191031 -Salmonella enterica TEM-106 2 abricate card auto 20191031 -Salmonella enterica CTX-M-9 2 abricate card auto 20191031 -Salmonella enterica catII 1 abricate card auto 20191031 -Salmonella enterica ACC-1 4 abricate card auto 20191031 -Salmonella enterica APH(2'')-IIa 1 abricate card auto 20191031 -Salmonella enterica AAC(6')-Im 1 abricate card auto 20191031 -Salmonella enterica SHV-2 1 abricate card auto 20191031 -Salmonella enterica dfrA32 1 abricate card auto 20191031 -Salmonella enterica TEM-12 2 abricate card auto 20191031 -Salmonella enterica aadA8b 1 abricate card auto 20191031 -Salmonella enterica arr-2 40 abricate card auto 20191031 -Salmonella enterica dfrA23 3 abricate card auto 20191031 -Salmonella enterica TEM-33 1 abricate card auto 20191031 -Salmonella enterica catI 1 abricate card auto 20191031 -Salmonella enterica TEM-19 1 abricate card auto 20191031 -Salmonella enterica MCR-3 3 abricate card auto 20191031 -Salmonella enterica QnrB6 2 abricate card auto 20191031 -Salmonella enterica AAC(6')-Il 1 abricate card auto 20191031 -Salmonella enterica Erm(42) 3 abricate card auto 20191031 -Salmonella enterica TEM-141 1 abricate card auto 20191031 -Salmonella enterica NDM-7 1 abricate card auto 20191031 -Salmonella enterica OXA-9 6 abricate card auto 20191031 -Salmonella enterica NDM-1 4 abricate card auto 20191031 -Salmonella enterica QepA2 8 abricate card auto 20191031 -Salmonella enterica SHV-66 2 abricate card auto 20191031 -Salmonella enterica APH(3')-VI 1 abricate card auto 20191031 -Salmonella enterica APH(3')-VIa 1 abricate card auto 20191031 -Salmonella enterica ErmB 6 abricate card auto 20191031 -Salmonella enterica cmlA4 4 abricate card auto 20191031 -Salmonella enterica tet(E) 4 abricate card auto 20191031 -Salmonella enterica rmtE 4 abricate card auto 20191031 -Salmonella enterica CTX-M-137 1 abricate card auto 20191031 -Salmonella enterica DHA-15 2 abricate card auto 20191031 -Salmonella enterica CTX-M-1 3 abricate card auto 20191031 -Salmonella enterica dfrA21 1 abricate card auto 20191031 -Salmonella enterica CTX-M-123 39 abricate card auto 20191031 -Salmonella enterica lnuF 1 abricate card auto 20191031 -Salmonella enterica baeR 1 abricate card auto 20191031 -Salmonella enterica TEM-40 1 abricate card auto 20191031 -Salmonella enterica aadA4 2 abricate card auto 20191031 -Salmonella enterica TEM-54 1 abricate card auto 20191031 -Salmonella enterica CTX-M-3 1 abricate card auto 20191031 -Salmonella enterica evgS 1 abricate card auto 20191031 -Salmonella enterica SHV-13 1 abricate card auto 20191031 Klebsiella pneumoniae FosA6 6526 abricate card auto 20191101 Klebsiella pneumoniae Klebsiella_pneumoniae_acrA 7942 abricate card auto 20191101 Klebsiella pneumoniae Klebsiella_pneumoniae_OmpK37 7420 abricate card auto 20191101