From 3e70d7bc3dc75f6b0aa589c09fb74079492756da Mon Sep 17 00:00:00 2001 From: "Andrea Telatin, M1" <15690844+telatin@users.noreply.github.com> Date: Thu, 19 Sep 2024 21:21:40 +0100 Subject: [PATCH] fix CI --- .github/workflows/test_n50.yml | 2 +- bin/n50 | Bin 18152 -> 0 bytes src/gen.c | 6 ++++++ 3 files changed, 7 insertions(+), 1 deletion(-) delete mode 100755 bin/n50 diff --git a/.github/workflows/test_n50.yml b/.github/workflows/test_n50.yml index 2ed22e0..4ff5f3c 100644 --- a/.github/workflows/test_n50.yml +++ b/.github/workflows/test_n50.yml @@ -22,7 +22,7 @@ jobs: sudo apt-get install -y gcc make zlib1g-dev - name: Build N50 Calculator - run: make + run: make clean && make - name: Run tests run: make test diff --git a/bin/n50 b/bin/n50 deleted file mode 100755 index 4fdde53e80fb8e8b4c0b2ae277f564c18249b575..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 18152 zcmeHPeRNdSwLg;t2r+U4f>NuGt2Sy>0t2Ka2sIOC;7)rJXbDyM@G{)oN#-$`natc# zvBjoqk|)>c_@b4Tt}fT2?Rs6V_k3#w*VBhSfh6#ffbAl%s`yrl4cOX=5y2KQA~Nr{ z&%KjOM(OK6{p;Pcvd`IjpMCb(XPbW8vy;n#SqL>)mpbsc$|x9EIrILVJ)~6eS*dBoJy;0wI4G9r^Zk&NKBjTZ4$s*O9A_ z_F*^I<90Q;l$C4h*O|K^ntE87B@LPvizagk$hX8&l%{abHh}(OeS?tYMKs4-6eE9K zpC!;vwkxM&VV+%}c_AZEa_u5oQ5t=^k1(^Cc4aBFmcHRE3-qM(k>y+M#QB%K_22Zk zz1g!{lV=xbDrxH=ke>*$WeH<#+~gX_pkuK`r(L)g5TZSs3uvol>{hf}Jm!752KZV4 zm8?$OS5^$Tk(gI0d)$1fpX)Ld5*f0+6S_HlbAR8DXEds~6|EFy%x(gh>KI%rf6HB4>up6kFC^Roz&gY;tmll|- z8n*@ZJXYzfgh_#|)DKviBhT1sgagNf?GRhHJ*I0dm9^u8Ab&f6?1{ji)K*wD`PVMC z2W$`69qxr+9aYvA-kyoQW3;z~3?PuM&RJ#FrBOx{1euZyq@S!r#g5Nv#;; zJyoSp4x64f1n%w;LHWEpuwavYNq{l$LaT(`&BjpoQC|N3i% zrR5DzjQNG%_Humo6F`sF3T0r{3NvRXyov52xw<$02KWPhA=2{!kRHDzJl>CGOVzzX zN8go9W~4Eb$(Z}i_h&tJXzf19QNz*=C9t*P@B_x{F5^uv)?)1MymBxjC8s=&lO-jw z5D(l|bpdj+kx6eMd81<=$#irJ?NjiH$kTpNHumoZE54|GC|(KicP#N3iIdzvQ^|&uGi=TqH}0;LGJ!~jW;Z1vT?=Kmo)Xs#(P5hE7&{X{`PKtj&NYCraklMDPzo)bpO+G_btPtL!Fko zk=58eDcM0YN$Sx|FRjDiq;bJ*I?sTnj4hhggG75w(B@SU$hr%NRIaQXK-AX!{|5+16{Atet4W`T?a7* z=6H_$Ia){Scc;EG%d1`>-(~G_nfBx@%WW*#Y3&qZfw@zs@y&xP(~k-D7KD_C^b?M@k$j_9pt~ViZ5HU0(Gw9&=x$PV>$>hp=p# zH^~j+0dzc`OUc(xk!Ec6^O!dM493aH{e;&QHkH+>XW=d~=o_i!&wGzmEM4xt7vv=rxY06Gy5@N!xTjNgRxWvn3mAu0ri zb~*(Uua^{$rNsLZ;;-?kvl}6IpPZ^1BqgcxH}RSxr{*ulw_Utzz}f9QA{lkvJ3S|j z-y@RA#-C;5G+sc`d!aog?Mr-8DLg?Dw9DaD^V8w$MFGjm>D)zj+S&e2%w&;-0K*52mvWEmJvE$r+e{| zLwGrU5|R0bxH+!m)ati{j+y9?k~iN9j+DFx?_*|Su?Ivrp>C-e%^4^hWLE)r9 zU;(VbD=b!dj`~t7$}uASk%`|%_=t&n2tQ@wO@tpe@h1rXZxjC&;jftZ3Bv!~#ObTy z^v_Mafbd-=ejnim@R1wI@YIUKoL}`88q=r^rr>u-aEplt32y*C@<%L*`{TcWn9gYF zhC{wfA%#1n{Tza9+l~PyJli8B*Y6XLwq0_>uft4>Ny`jqp>Yt#bQOn$r=Ec(X*Z3i zGd`$GE$}Al2SW%r~mRXqDHc1cXIs; znBhO6TsA&{XLsR6RW{Dm86TxL0HqndnZxetcjEss@~<>ua!Lf|NXez%;Nm(H{tET&B|Ri|MVb(%;HT7~wu%x3Xr<*QiBVsA?h5V1!wUnXk1uBt6U;qT9tg zVAuTl)O&~M$J{O9s3y{rwrGn_hY^(}*{SQp;78&*pEoAPBAOcT2eif#Rvw#PZZ*Jy z!A6jrv&yxu;aiMq7b{s4A$_rBOcdw)?!lzoQqd}_!ckQdxoCD8ZURZSW~Ey{Fa530 zNjHYY?Sk`pLvm zy92RE(6?RGn*%Xu4@SfmEk>Iy`a+GO_Go~npfZ1cc1Jmx9hYV1cza@GiCc@Q(E#@u zxh#7;G;S455Z0Tus2I~)<5~!=!>;Rrm>y7LqCXmLv0RBA<(pt`S|t>%i$@~is2&qr z;z2zS!4b;cRZ{GW>tWh_l@0_Du~E}Cl^+JSG91|+4Ky|D;+-oi#6=4iEfHOz#;E2K z8#El=K#0i!RSU&%;Op?9a21Yd$k(Dx$M!Z@du_LOy`%f zHj`NfQ7UC^=IF9ETwzY*1)8^b>ESJ2HF-;K#7Q1+yLgL_ki4bmmc++b4ZOt%Lf&Et zyv5fUyrpMzBsbG)DgS`z>#TOR)y}b6^O2J3BM|r3qB6$DBA0wfj`+y$ry_yJD> zx&VEE6M#Pe&I2IrK!Ts+9>8)3E06)3071a_0LZB2I% z=Jz4Hzb_D+%xQ}I zqKzgC=|s^8Q+RTV;*U^bjh`w0s0JneN1_28ZIh;lBf1g{<6i(MO^>O;aE!Q*fghum zl9w1J4+g_3TCGKmY-b9F;79&U$?A;g%}6V0R8-WYHB0|vn2bmM4s^A~kjcUnNSM0t ze+Sf91l>RyDi z{#Nv<&GFDSwwRKx@N?_}EL>r?gjHnxC~O5QQd*kf6-|xnnqsA0O;^J$5nohe*S7dz z^Q=ge$(Z{5&7F>#vOR^JW`YQd;Bd^Kq!OGLeolZ2jxy9HP5B-II=YcCLj5q5)AYM? zqRTBh`+px6S#+Bv@3QDYi(YHd5hR?@_=f;!$t%2&yK?FFJi0TF{zV@BQXbu%N8`9p z(tj+Eej|@Ql}Ep4(quX>e?bjmoc=VAE;KvG*GE4(z~4B1T^{}AJo>ggnzHQiH$L8# zN3YJK>+|UQ^XM&kbaNg}c}0{{M8}14hp>(O_xzMEGz&m^LX;y!`9XA6C@+X|fhdkq ziWGf)cr)N10CaXlz%2mETguf= N + * SUM_LEN: Total length of all contigs + * TOT_SEQS: Total number of contigs + */ if (N50 > SUM_LEN || TOT_SEQS < 1) { fprintf(stderr, "Invalid input: N50 must be <= SUM_LEN and TOT_SEQS >= 1\n"); return NULL;