From df60bc9c4fdba066bdc3149866bc961a01372358 Mon Sep 17 00:00:00 2001
From: Andrea Telatin <15690844+telatin@users.noreply.github.com>
Date: Thu, 7 Jul 2022 15:21:55 +0100
Subject: [PATCH] rebuild-mac-env

---
 .github/workflows/env.yaml     |  36 ---
 docs/dadaist2-Darwin.yaml      | 534 ++++++++++++++++-----------------
 env/dadaist2-1.2.4-Darwin.yaml | 270 +++++++++++++++++
 env/dadaist2-1.2.5-Darwin.yaml | 270 +++++++++++++++++
 env/dadaist2-1.2.5-Linux.yaml  | 286 ++++++++++++++++++
 env/dadaist2_1.2.4_Darwin.yaml | 270 -----------------
 env/dadaist2_1.2.4_Linux.yaml  | 287 ------------------
 7 files changed, 1093 insertions(+), 860 deletions(-)
 delete mode 100644 .github/workflows/env.yaml
 create mode 100644 env/dadaist2-1.2.4-Darwin.yaml
 create mode 100644 env/dadaist2-1.2.5-Darwin.yaml
 create mode 100644 env/dadaist2-1.2.5-Linux.yaml
 delete mode 100644 env/dadaist2_1.2.4_Darwin.yaml
 delete mode 100644 env/dadaist2_1.2.4_Linux.yaml

diff --git a/.github/workflows/env.yaml b/.github/workflows/env.yaml
deleted file mode 100644
index 0f25cb6..0000000
--- a/.github/workflows/env.yaml
+++ /dev/null
@@ -1,36 +0,0 @@
-name: test-conda-env
-on:
-  push
-  
-jobs:
-  linux:
-    name: Mamba Linux
-    runs-on: "ubuntu-latest"
-    steps:
-      - uses: actions/checkout@v2
-      - uses: conda-incubator/setup-miniconda@v2
-        with:
-          miniconda-version: "latest"
-          activate-environment: foo
-      - name: Bash
-        shell: bash -l {0}
-        run: |
-          conda install -y -c conda-forge mamba
-          mamba env create -n dadaist2 --file docs/dadaist2-Darwin.yaml 
-
-  example-2-mac:
-    name: Ex2 Mac
-    runs-on: "macos-latest"
-    steps:
-      - uses: actions/checkout@v2
-      - uses: conda-incubator/setup-miniconda@v2
-        with:
-          miniconda-version: "latest"
-          activate-environment: foo
-
-      - name: Bash
-        shell: bash -l {0}
-        run: |
-          conda info
-          conda install -y -c conda-forge mamba
-          mamba env create -n dadaist2 --file docs/dadaist2-Linux.yaml
diff --git a/docs/dadaist2-Darwin.yaml b/docs/dadaist2-Darwin.yaml
index c430bdc..3ffbc81 100644
--- a/docs/dadaist2-Darwin.yaml
+++ b/docs/dadaist2-Darwin.yaml
@@ -1,270 +1,270 @@
 name: dadaist2-1.2.4
 channels:
-- defaults
-- conda-forge
-- bioconda
+  - defaults
+  - conda-forge
+  - bioconda
 dependencies:
-- _r-mutex=1.0.1
-- argtable2=2.13
-- bioconductor-biobase=2.50.0
-- bioconductor-biocgenerics=0.36.0
-- bioconductor-biocparallel=1.24.1
-- bioconductor-biomformat=1.18.0
-- bioconductor-biostrings=2.58.0
-- bioconductor-dada2=1.18.0
-- bioconductor-decipher=2.18.1
-- bioconductor-delayedarray=0.16.3
-- bioconductor-genomeinfodb=1.26.4
-- bioconductor-genomeinfodbdata=1.2.4
-- bioconductor-genomicalignments=1.26.0
-- bioconductor-genomicranges=1.42.0
-- bioconductor-iranges=2.24.1
-- bioconductor-matrixgenerics=1.2.1
-- bioconductor-microbiome=1.12.0
-- bioconductor-multtest=2.46.0
-- bioconductor-phyloseq=1.34.0
-- bioconductor-rhdf5=2.34.0
-- bioconductor-rhdf5filters=1.2.0
-- bioconductor-rhdf5lib=1.12.1
-- bioconductor-rhtslib=1.22.0
-- bioconductor-rsamtools=2.6.0
-- bioconductor-s4vectors=0.28.1
-- bioconductor-shortread=1.48.0
-- bioconductor-summarizedexperiment=1.20.0
-- bioconductor-xvector=0.30.0
-- bioconductor-zlibbioc=1.36.0
-- biom-format=2.1.10
-- bwidget=1.9.14
-- bzip2=1.0.8
-- c-ares=1.18.1
-- ca-certificates=2022.6.15
-- cached-property=1.5.2
-- cached_property=1.5.2
-- cairo=1.16.0
-- cctools_osx-64=973.0.1
-- clang=14.0.4
-- clang-14=14.0.4
-- clang_osx-64=14.0.4
-- clangxx=14.0.4
-- clangxx_osx-64=14.0.4
-- click=8.1.3
-- clustalo=1.2.4
-- commonmark=0.9.1
-- compiler-rt=14.0.4
-- compiler-rt_osx-64=14.0.4
-- curl=7.83.1
-- cutadapt=3.5
-- dadaist2=1.2.4
-- dataclasses=0.8
-- dnaio=0.9.0
-- expat=2.4.8
-- fastp=0.23.1
-- fasttree=2.1.10
-- font-ttf-dejavu-sans-mono=2.37
-- font-ttf-inconsolata=3.000
-- font-ttf-source-code-pro=2.038
-- font-ttf-ubuntu=0.83
-- fontconfig=2.14.0
-- fonts-conda-ecosystem=1
-- fonts-conda-forge=1
-- freetype=2.11.0
-- fribidi=1.0.10
-- future=0.18.2
-- gettext=0.21.0
-- gfortran_impl_osx-64=9.3.0
-- gfortran_osx-64=9.3.0
-- glpk=5.0
-- gmp=6.2.1
-- graphite2=1.3.14
-- gsl=2.7.1
-- h5py=3.7.0
-- harfbuzz=4.4.1
-- hdf5=1.12.1
-- icu=70.1
-- isa-l=2.30.0
-- isl=0.22.1
-- jbig=2.1
-- jpeg=9e
-- krb5=1.19.3
-- ld64_osx-64=609
-- lerc=2.2.1
-- libblas=3.9.0
-- libcblas=3.9.0
-- libclang-cpp14=14.0.4
-- libcurl=7.83.1
-- libcxx=14.0.6
-- libdeflate=1.7
-- libedit=3.1.20210910
-- libev=4.33
-- libffi=3.4.2
-- libgfortran=5.0.0
-- libgfortran-devel_osx-64=9.3.0
-- libgfortran5=9.3.0
-- libglib=2.70.2
-- libiconv=1.16
-- libidn2=2.3.2
-- liblapack=3.9.0
-- libllvm11=11.1.0
-- libllvm14=14.0.4
-- libnghttp2=1.47.0
-- libopenblas=0.3.20
-- libpng=1.6.37
-- libssh2=1.10.0
-- libtiff=4.3.0
-- libunistring=0.9.10
-- libwebp-base=1.2.2
-- libxml2=2.9.14
-- libzip=1.9.2
-- libzlib=1.2.12
-- llvm-openmp=14.0.4
-- llvm-tools=14.0.4
-- lz4-c=1.9.3
-- make=4.3
-- mpc=1.2.1
-- mpfr=4.1.0
-- ncurses=6.3
-- numpy=1.23.0
-- openssl=1.1.1q
-- pandas=1.3.4
-- pango=1.50.8
-- pbzip2=1.1.13
-- pcre=8.45
-- pcre2=10.37
-- perl=5.32.1
-- perl-capture-tiny=0.48
-- perl-carp=1.50
-- perl-exporter=5.74
-- perl-extutils-makemaker=7.64
-- perl-fastx-reader=1.5.0
-- pigz=2.6
-- pip=22.1.2
-- pixman=0.40.0
-- pygments=2.12.0
-- python=3.9.13
-- python-dateutil=2.8.2
-- python-isal=0.11.1
-- python_abi=3.9
-- pytz=2022.1
-- qax=0.9.6
-- r-ade4=1.7_19
-- r-ape=5.6_2
-- r-assertthat=0.2.1
-- r-backports=1.4.1
-- r-base=4.0.5
-- r-bh=1.78.0_0
-- r-bit=4.0.4
-- r-bit64=4.0.5
-- r-bitops=1.0_7
-- r-blob=1.2.3
-- r-brio=1.1.3
-- r-cachem=1.0.6
-- r-callr=3.7.0
-- r-cli=3.3.0
-- r-cluster=2.1.3
-- r-codetools=0.2_18
-- r-colorspace=2.0_3
-- r-crayon=1.5.1
-- r-data.table=1.14.2
-- r-dbi=1.1.3
-- r-deldir=1.0_6
-- r-desc=1.4.1
-- r-diffobj=0.3.5
-- r-digest=0.6.29
-- r-dplyr=1.0.9
-- r-ellipsis=0.3.2
-- r-evaluate=0.15
-- r-fansi=1.0.3
-- r-farver=2.1.1
-- r-fastmap=1.1.0
-- r-foreach=1.5.2
-- r-formatr=1.12
-- r-fs=1.5.2
-- r-futile.logger=1.4.3
-- r-futile.options=1.0.1
-- r-generics=0.1.3
-- r-ggplot2=3.3.6
-- r-glue=1.6.2
-- r-gtable=0.3.0
-- r-hms=1.1.1
-- r-hwriter=1.3.2.1
-- r-igraph=1.3.2
-- r-interp=1.1_2
-- r-isoband=0.2.5
-- r-iterators=1.0.14
-- r-jpeg=0.1_9
-- r-jsonlite=1.8.0
-- r-labeling=0.4.2
-- r-lambda.r=1.2.4
-- r-lattice=0.20_45
-- r-latticeextra=0.6_30
-- r-lifecycle=1.0.1
-- r-magrittr=2.0.3
-- r-mass=7.3_57
-- r-matrix=1.3_2
-- r-matrixstats=0.62.0
-- r-memoise=2.0.1
-- r-mgcv=1.8_40
-- r-munsell=0.5.0
-- r-nlme=3.1_158
-- r-permute=0.9_7
-- r-pillar=1.7.0
-- r-pixmap=0.4_12
-- r-pkgconfig=2.0.3
-- r-pkgload=1.3.0
-- r-plogr=0.2.0
-- r-plyr=1.8.7
-- r-png=0.1_7
-- r-praise=1.0.0
-- r-prettyunits=1.1.1
-- r-processx=3.6.1
-- r-progress=1.2.2
-- r-ps=1.7.1
-- r-purrr=0.3.4
-- r-r6=2.5.1
-- r-rcolorbrewer=1.1_3
-- r-rcpp=1.0.8.3
-- r-rcppeigen=0.3.3.9.2
-- r-rcppparallel=5.1.5
-- r-rcurl=1.98_1.7
-- r-rematch2=2.1.2
-- r-reshape2=1.4.4
-- r-rlang=1.0.3
-- r-rprojroot=2.0.3
-- r-rsqlite=2.2.8
-- r-rtsne=0.16
-- r-scales=1.2.0
-- r-snow=0.4_4
-- r-sp=1.5_0
-- r-stringi=1.7.6
-- r-stringr=1.4.0
-- r-survival=3.3_1
-- r-testthat=3.1.4
-- r-tibble=3.1.7
-- r-tidyr=1.2.0
-- r-tidyselect=1.1.2
-- r-utf8=1.2.2
-- r-vctrs=0.4.1
-- r-vegan=2.6_2
-- r-viridislite=0.4.0
-- r-waldo=0.4.0
-- r-withr=2.5.0
-- readline=8.1.2
-- rich=12.4.4
-- scipy=1.8.1
-- seqfu=1.12.0
-- setuptools=59.8.0
-- sigtool=0.1.3
-- six=1.16.0
-- sqlite=3.39.0
-- tapi=1100.0.11
-- tk=8.6.12
-- tktable=2.10
-- typing_extensions=4.3.0
-- tzdata=2022a
-- wget=1.21.3
-- wheel=0.37.1
-- xopen=1.5.0
-- xz=5.2.5
-- zip=3.0
-- zlib=1.2.12
-- zstd=1.5.2
+  - _r-mutex=1.0.1
+  - argtable2=2.13
+  - bioconductor-biobase=2.50.0
+  - bioconductor-biocgenerics=0.36.0
+  - bioconductor-biocparallel=1.24.1
+  - bioconductor-biomformat=1.18.0
+  - bioconductor-biostrings=2.58.0
+  - bioconductor-dada2=1.18.0
+  - bioconductor-decipher=2.18.1
+  - bioconductor-delayedarray=0.16.3
+  - bioconductor-genomeinfodb=1.26.4
+  - bioconductor-genomeinfodbdata=1.2.4
+  - bioconductor-genomicalignments=1.26.0
+  - bioconductor-genomicranges=1.42.0
+  - bioconductor-iranges=2.24.1
+  - bioconductor-matrixgenerics=1.2.1
+  - bioconductor-microbiome=1.12.0
+  - bioconductor-multtest=2.46.0
+  - bioconductor-phyloseq=1.34.0
+  - bioconductor-rhdf5=2.34.0
+  - bioconductor-rhdf5filters=1.2.0
+  - bioconductor-rhdf5lib=1.12.1
+  - bioconductor-rhtslib=1.22.0
+  - bioconductor-rsamtools=2.6.0
+  - bioconductor-s4vectors=0.28.1
+  - bioconductor-shortread=1.48.0
+  - bioconductor-summarizedexperiment=1.20.0
+  - bioconductor-xvector=0.30.0
+  - bioconductor-zlibbioc=1.36.0
+  - biom-format=2.1.10
+  - bwidget=1.9.14
+  - bzip2=1.0.8
+  - c-ares=1.18.1
+  - ca-certificates=2022.6.15
+  - cached-property=1.5.2
+  - cached_property=1.5.2
+  - cairo=1.16.0
+  - cctools_osx-64=973.0.1
+  - clang=14.0.4
+  - clang-14=14.0.4
+  - clang_osx-64=14.0.4
+  - clangxx=14.0.4
+  - clangxx_osx-64=14.0.4
+  - click=8.1.3
+  - clustalo=1.2.4
+  - commonmark=0.9.1
+  - compiler-rt=14.0.4
+  - compiler-rt_osx-64=14.0.4
+  - curl=7.83.1
+  - cutadapt=3.5
+  - dadaist2=1.2.4
+  - dataclasses=0.8
+  - dnaio=0.9.0
+  - expat=2.4.8
+  - fastp=0.23.1
+  - fasttree=2.1.10
+  - font-ttf-dejavu-sans-mono=2.37
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
+  - font-ttf-ubuntu=0.83
+  - fontconfig=2.14.0
+  - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
+  - freetype=2.11.0
+  - fribidi=1.0.10
+  - future=0.18.2
+  - gettext=0.21.0
+  - gfortran_impl_osx-64=9.3.0
+  - gfortran_osx-64=9.3.0
+  - glpk=5.0
+  - gmp=6.2.1
+  - graphite2=1.3.14
+  - gsl=2.7.1
+  - h5py=3.7.0
+  - harfbuzz=4.4.1
+  - hdf5=1.12.1
+  - icu=70.1
+  - isa-l=2.30.0
+  - isl=0.22.1
+  - jbig=2.1
+  - jpeg=9e
+  - krb5=1.19.3
+  - ld64_osx-64=609
+  - lerc=2.2.1
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libclang-cpp14=14.0.4
+  - libcurl=7.83.1
+  - libcxx=14.0.6
+  - libdeflate=1.7
+  - libedit=3.1.20210910
+  - libev=4.33
+  - libffi=3.4.2
+  - libgfortran=5.0.0
+  - libgfortran-devel_osx-64=9.3.0
+  - libgfortran5=9.3.0
+  - libglib=2.70.2
+  - libiconv=1.16
+  - libidn2=2.3.2
+  - liblapack=3.9.0
+  - libllvm11=11.1.0
+  - libllvm14=14.0.4
+  - libnghttp2=1.47.0
+  - libopenblas=0.3.20
+  - libpng=1.6.37
+  - libssh2=1.10.0
+  - libtiff=4.3.0
+  - libunistring=0.9.10
+  - libwebp-base=1.2.2
+  - libxml2=2.9.14
+  - libzip=1.9.2
+  - libzlib=1.2.12
+  - llvm-openmp=14.0.4
+  - llvm-tools=14.0.4
+  - lz4-c=1.9.3
+  - make=4.3
+  - mpc=1.2.1
+  - mpfr=4.1.0
+  - ncurses=6.3
+  - numpy=1.23.0
+  - openssl=1.1.1q
+  - pandas=1.3.4
+  - pango=1.50.8
+  - pbzip2=1.1.13
+  - pcre=8.45
+  - pcre2=10.37
+  - perl=5.32.1
+  - perl-capture-tiny=0.48
+  - perl-carp=1.50
+  - perl-exporter=5.74
+  - perl-extutils-makemaker=7.64
+  - perl-fastx-reader=1.5.0
+  - pigz=2.6
+  - pip=22.1.2
+  - pixman=0.40.0
+  - pygments=2.12.0
+  - python=3.9.13
+  - python-dateutil=2.8.2
+  - python-isal=0.11.1
+  - python_abi=3.9
+  - pytz=2022.1
+  - qax=0.9.6
+  - r-ade4=1.7_19
+  - r-ape=5.6_2
+  - r-assertthat=0.2.1
+  - r-backports=1.4.1
+  - r-base=4.0.5
+  - r-bh=1.78.0_0
+  - r-bit=4.0.4
+  - r-bit64=4.0.5
+  - r-bitops=1.0_7
+  - r-blob=1.2.3
+  - r-brio=1.1.3
+  - r-cachem=1.0.6
+  - r-callr=3.7.0
+  - r-cli=3.3.0
+  - r-cluster=2.1.3
+  - r-codetools=0.2_18
+  - r-colorspace=2.0_3
+  - r-crayon=1.5.1
+  - r-data.table=1.14.2
+  - r-dbi=1.1.3
+  - r-deldir=1.0_6
+  - r-desc=1.4.1
+  - r-diffobj=0.3.5
+  - r-digest=0.6.29
+  - r-dplyr=1.0.9
+  - r-ellipsis=0.3.2
+  - r-evaluate=0.15
+  - r-fansi=1.0.3
+  - r-farver=2.1.1
+  - r-fastmap=1.1.0
+  - r-foreach=1.5.2
+  - r-formatr=1.12
+  - r-fs=1.5.2
+  - r-futile.logger=1.4.3
+  - r-futile.options=1.0.1
+  - r-generics=0.1.3
+  - r-ggplot2=3.3.6
+  - r-glue=1.6.2
+  - r-gtable=0.3.0
+  - r-hms=1.1.1
+  - r-hwriter=1.3.2.1
+  - r-igraph=1.3.2
+  - r-interp=1.1_2
+  - r-isoband=0.2.5
+  - r-iterators=1.0.14
+  - r-jpeg=0.1_9
+  - r-jsonlite=1.8.0
+  - r-labeling=0.4.2
+  - r-lambda.r=1.2.4
+  - r-lattice=0.20_45
+  - r-latticeextra=0.6_30
+  - r-lifecycle=1.0.1
+  - r-magrittr=2.0.3
+  - r-mass=7.3_57
+  - r-matrix=1.3_2
+  - r-matrixstats=0.62.0
+  - r-memoise=2.0.1
+  - r-mgcv=1.8_40
+  - r-munsell=0.5.0
+  - r-nlme=3.1_158
+  - r-permute=0.9_7
+  - r-pillar=1.7.0
+  - r-pixmap=0.4_12
+  - r-pkgconfig=2.0.3
+  - r-pkgload=1.3.0
+  - r-plogr=0.2.0
+  - r-plyr=1.8.7
+  - r-png=0.1_7
+  - r-praise=1.0.0
+  - r-prettyunits=1.1.1
+  - r-processx=3.6.1
+  - r-progress=1.2.2
+  - r-ps=1.7.1
+  - r-purrr=0.3.4
+  - r-r6=2.5.1
+  - r-rcolorbrewer=1.1_3
+  - r-rcpp=1.0.8.3
+  - r-rcppeigen=0.3.3.9.2
+  - r-rcppparallel=5.1.5
+  - r-rcurl=1.98_1.7
+  - r-rematch2=2.1.2
+  - r-reshape2=1.4.4
+  - r-rlang=1.0.3
+  - r-rprojroot=2.0.3
+  - r-rsqlite=2.2.8
+  - r-rtsne=0.16
+  - r-scales=1.2.0
+  - r-snow=0.4_4
+  - r-sp=1.5_0
+  - r-stringi=1.7.6
+  - r-stringr=1.4.0
+  - r-survival=3.3_1
+  - r-testthat=3.1.4
+  - r-tibble=3.1.7
+  - r-tidyr=1.2.0
+  - r-tidyselect=1.1.2
+  - r-utf8=1.2.2
+  - r-vctrs=0.4.1
+  - r-vegan=2.6_2
+  - r-viridislite=0.4.0
+  - r-waldo=0.4.0
+  - r-withr=2.5.0
+  - readline=8.1.2
+  - rich=12.4.4
+  - scipy=1.8.1
+  - seqfu=1.12.0
+  - setuptools=59.8.0
+  - sigtool=0.1.3
+  - six=1.16.0
+  - sqlite=3.39.0
+  - tapi=1100.0.11
+  - tk=8.6.12
+  - tktable=2.10
+  - typing_extensions=4.3.0
+  - tzdata=2022a
+  - wget=1.21.3
+  - wheel=0.37.1
+  - xopen=1.5.0
+  - xz=5.2.5
+  - zip=3.0
+  - zlib=1.2.12
+  - zstd=1.5.2
diff --git a/env/dadaist2-1.2.4-Darwin.yaml b/env/dadaist2-1.2.4-Darwin.yaml
new file mode 100644
index 0000000..3ffbc81
--- /dev/null
+++ b/env/dadaist2-1.2.4-Darwin.yaml
@@ -0,0 +1,270 @@
+name: dadaist2-1.2.4
+channels:
+  - defaults
+  - conda-forge
+  - bioconda
+dependencies:
+  - _r-mutex=1.0.1
+  - argtable2=2.13
+  - bioconductor-biobase=2.50.0
+  - bioconductor-biocgenerics=0.36.0
+  - bioconductor-biocparallel=1.24.1
+  - bioconductor-biomformat=1.18.0
+  - bioconductor-biostrings=2.58.0
+  - bioconductor-dada2=1.18.0
+  - bioconductor-decipher=2.18.1
+  - bioconductor-delayedarray=0.16.3
+  - bioconductor-genomeinfodb=1.26.4
+  - bioconductor-genomeinfodbdata=1.2.4
+  - bioconductor-genomicalignments=1.26.0
+  - bioconductor-genomicranges=1.42.0
+  - bioconductor-iranges=2.24.1
+  - bioconductor-matrixgenerics=1.2.1
+  - bioconductor-microbiome=1.12.0
+  - bioconductor-multtest=2.46.0
+  - bioconductor-phyloseq=1.34.0
+  - bioconductor-rhdf5=2.34.0
+  - bioconductor-rhdf5filters=1.2.0
+  - bioconductor-rhdf5lib=1.12.1
+  - bioconductor-rhtslib=1.22.0
+  - bioconductor-rsamtools=2.6.0
+  - bioconductor-s4vectors=0.28.1
+  - bioconductor-shortread=1.48.0
+  - bioconductor-summarizedexperiment=1.20.0
+  - bioconductor-xvector=0.30.0
+  - bioconductor-zlibbioc=1.36.0
+  - biom-format=2.1.10
+  - bwidget=1.9.14
+  - bzip2=1.0.8
+  - c-ares=1.18.1
+  - ca-certificates=2022.6.15
+  - cached-property=1.5.2
+  - cached_property=1.5.2
+  - cairo=1.16.0
+  - cctools_osx-64=973.0.1
+  - clang=14.0.4
+  - clang-14=14.0.4
+  - clang_osx-64=14.0.4
+  - clangxx=14.0.4
+  - clangxx_osx-64=14.0.4
+  - click=8.1.3
+  - clustalo=1.2.4
+  - commonmark=0.9.1
+  - compiler-rt=14.0.4
+  - compiler-rt_osx-64=14.0.4
+  - curl=7.83.1
+  - cutadapt=3.5
+  - dadaist2=1.2.4
+  - dataclasses=0.8
+  - dnaio=0.9.0
+  - expat=2.4.8
+  - fastp=0.23.1
+  - fasttree=2.1.10
+  - font-ttf-dejavu-sans-mono=2.37
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
+  - font-ttf-ubuntu=0.83
+  - fontconfig=2.14.0
+  - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
+  - freetype=2.11.0
+  - fribidi=1.0.10
+  - future=0.18.2
+  - gettext=0.21.0
+  - gfortran_impl_osx-64=9.3.0
+  - gfortran_osx-64=9.3.0
+  - glpk=5.0
+  - gmp=6.2.1
+  - graphite2=1.3.14
+  - gsl=2.7.1
+  - h5py=3.7.0
+  - harfbuzz=4.4.1
+  - hdf5=1.12.1
+  - icu=70.1
+  - isa-l=2.30.0
+  - isl=0.22.1
+  - jbig=2.1
+  - jpeg=9e
+  - krb5=1.19.3
+  - ld64_osx-64=609
+  - lerc=2.2.1
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libclang-cpp14=14.0.4
+  - libcurl=7.83.1
+  - libcxx=14.0.6
+  - libdeflate=1.7
+  - libedit=3.1.20210910
+  - libev=4.33
+  - libffi=3.4.2
+  - libgfortran=5.0.0
+  - libgfortran-devel_osx-64=9.3.0
+  - libgfortran5=9.3.0
+  - libglib=2.70.2
+  - libiconv=1.16
+  - libidn2=2.3.2
+  - liblapack=3.9.0
+  - libllvm11=11.1.0
+  - libllvm14=14.0.4
+  - libnghttp2=1.47.0
+  - libopenblas=0.3.20
+  - libpng=1.6.37
+  - libssh2=1.10.0
+  - libtiff=4.3.0
+  - libunistring=0.9.10
+  - libwebp-base=1.2.2
+  - libxml2=2.9.14
+  - libzip=1.9.2
+  - libzlib=1.2.12
+  - llvm-openmp=14.0.4
+  - llvm-tools=14.0.4
+  - lz4-c=1.9.3
+  - make=4.3
+  - mpc=1.2.1
+  - mpfr=4.1.0
+  - ncurses=6.3
+  - numpy=1.23.0
+  - openssl=1.1.1q
+  - pandas=1.3.4
+  - pango=1.50.8
+  - pbzip2=1.1.13
+  - pcre=8.45
+  - pcre2=10.37
+  - perl=5.32.1
+  - perl-capture-tiny=0.48
+  - perl-carp=1.50
+  - perl-exporter=5.74
+  - perl-extutils-makemaker=7.64
+  - perl-fastx-reader=1.5.0
+  - pigz=2.6
+  - pip=22.1.2
+  - pixman=0.40.0
+  - pygments=2.12.0
+  - python=3.9.13
+  - python-dateutil=2.8.2
+  - python-isal=0.11.1
+  - python_abi=3.9
+  - pytz=2022.1
+  - qax=0.9.6
+  - r-ade4=1.7_19
+  - r-ape=5.6_2
+  - r-assertthat=0.2.1
+  - r-backports=1.4.1
+  - r-base=4.0.5
+  - r-bh=1.78.0_0
+  - r-bit=4.0.4
+  - r-bit64=4.0.5
+  - r-bitops=1.0_7
+  - r-blob=1.2.3
+  - r-brio=1.1.3
+  - r-cachem=1.0.6
+  - r-callr=3.7.0
+  - r-cli=3.3.0
+  - r-cluster=2.1.3
+  - r-codetools=0.2_18
+  - r-colorspace=2.0_3
+  - r-crayon=1.5.1
+  - r-data.table=1.14.2
+  - r-dbi=1.1.3
+  - r-deldir=1.0_6
+  - r-desc=1.4.1
+  - r-diffobj=0.3.5
+  - r-digest=0.6.29
+  - r-dplyr=1.0.9
+  - r-ellipsis=0.3.2
+  - r-evaluate=0.15
+  - r-fansi=1.0.3
+  - r-farver=2.1.1
+  - r-fastmap=1.1.0
+  - r-foreach=1.5.2
+  - r-formatr=1.12
+  - r-fs=1.5.2
+  - r-futile.logger=1.4.3
+  - r-futile.options=1.0.1
+  - r-generics=0.1.3
+  - r-ggplot2=3.3.6
+  - r-glue=1.6.2
+  - r-gtable=0.3.0
+  - r-hms=1.1.1
+  - r-hwriter=1.3.2.1
+  - r-igraph=1.3.2
+  - r-interp=1.1_2
+  - r-isoband=0.2.5
+  - r-iterators=1.0.14
+  - r-jpeg=0.1_9
+  - r-jsonlite=1.8.0
+  - r-labeling=0.4.2
+  - r-lambda.r=1.2.4
+  - r-lattice=0.20_45
+  - r-latticeextra=0.6_30
+  - r-lifecycle=1.0.1
+  - r-magrittr=2.0.3
+  - r-mass=7.3_57
+  - r-matrix=1.3_2
+  - r-matrixstats=0.62.0
+  - r-memoise=2.0.1
+  - r-mgcv=1.8_40
+  - r-munsell=0.5.0
+  - r-nlme=3.1_158
+  - r-permute=0.9_7
+  - r-pillar=1.7.0
+  - r-pixmap=0.4_12
+  - r-pkgconfig=2.0.3
+  - r-pkgload=1.3.0
+  - r-plogr=0.2.0
+  - r-plyr=1.8.7
+  - r-png=0.1_7
+  - r-praise=1.0.0
+  - r-prettyunits=1.1.1
+  - r-processx=3.6.1
+  - r-progress=1.2.2
+  - r-ps=1.7.1
+  - r-purrr=0.3.4
+  - r-r6=2.5.1
+  - r-rcolorbrewer=1.1_3
+  - r-rcpp=1.0.8.3
+  - r-rcppeigen=0.3.3.9.2
+  - r-rcppparallel=5.1.5
+  - r-rcurl=1.98_1.7
+  - r-rematch2=2.1.2
+  - r-reshape2=1.4.4
+  - r-rlang=1.0.3
+  - r-rprojroot=2.0.3
+  - r-rsqlite=2.2.8
+  - r-rtsne=0.16
+  - r-scales=1.2.0
+  - r-snow=0.4_4
+  - r-sp=1.5_0
+  - r-stringi=1.7.6
+  - r-stringr=1.4.0
+  - r-survival=3.3_1
+  - r-testthat=3.1.4
+  - r-tibble=3.1.7
+  - r-tidyr=1.2.0
+  - r-tidyselect=1.1.2
+  - r-utf8=1.2.2
+  - r-vctrs=0.4.1
+  - r-vegan=2.6_2
+  - r-viridislite=0.4.0
+  - r-waldo=0.4.0
+  - r-withr=2.5.0
+  - readline=8.1.2
+  - rich=12.4.4
+  - scipy=1.8.1
+  - seqfu=1.12.0
+  - setuptools=59.8.0
+  - sigtool=0.1.3
+  - six=1.16.0
+  - sqlite=3.39.0
+  - tapi=1100.0.11
+  - tk=8.6.12
+  - tktable=2.10
+  - typing_extensions=4.3.0
+  - tzdata=2022a
+  - wget=1.21.3
+  - wheel=0.37.1
+  - xopen=1.5.0
+  - xz=5.2.5
+  - zip=3.0
+  - zlib=1.2.12
+  - zstd=1.5.2
diff --git a/env/dadaist2-1.2.5-Darwin.yaml b/env/dadaist2-1.2.5-Darwin.yaml
new file mode 100644
index 0000000..186a305
--- /dev/null
+++ b/env/dadaist2-1.2.5-Darwin.yaml
@@ -0,0 +1,270 @@
+name: dadaist2-1.2.4
+channels:
+  - defaults
+  - conda-forge
+  - bioconda
+dependencies:
+  - _r-mutex=1.0.1
+  - argtable2=2.13
+  - bioconductor-biobase=2.50.0
+  - bioconductor-biocgenerics=0.36.0
+  - bioconductor-biocparallel=1.24.1
+  - bioconductor-biomformat=1.18.0
+  - bioconductor-biostrings=2.58.0
+  - bioconductor-dada2=1.18.0
+  - bioconductor-decipher=2.18.1
+  - bioconductor-delayedarray=0.16.3
+  - bioconductor-genomeinfodb=1.26.4
+  - bioconductor-genomeinfodbdata=1.2.4
+  - bioconductor-genomicalignments=1.26.0
+  - bioconductor-genomicranges=1.42.0
+  - bioconductor-iranges=2.24.1
+  - bioconductor-matrixgenerics=1.2.1
+  - bioconductor-microbiome=1.12.0
+  - bioconductor-multtest=2.46.0
+  - bioconductor-phyloseq=1.34.0
+  - bioconductor-rhdf5=2.34.0
+  - bioconductor-rhdf5filters=1.2.0
+  - bioconductor-rhdf5lib=1.12.1
+  - bioconductor-rhtslib=1.22.0
+  - bioconductor-rsamtools=2.6.0
+  - bioconductor-s4vectors=0.28.1
+  - bioconductor-shortread=1.48.0
+  - bioconductor-summarizedexperiment=1.20.0
+  - bioconductor-xvector=0.30.0
+  - bioconductor-zlibbioc=1.36.0
+  - biom-format=2.1.10
+  - bwidget=1.9.14
+  - bzip2=1.0.8
+  - c-ares=1.18.1
+  - ca-certificates=2022.6.15
+  - cached-property=1.5.2
+  - cached_property=1.5.2
+  - cairo=1.16.0
+  - cctools_osx-64=973.0.1
+  - clang=14.0.4
+  - clang-14=14.0.4
+  - clang_osx-64=14.0.4
+  - clangxx=14.0.4
+  - clangxx_osx-64=14.0.4
+  - click=8.1.3
+  - clustalo=1.2.4
+  - commonmark=0.9.1
+  - compiler-rt=14.0.4
+  - compiler-rt_osx-64=14.0.4
+  - curl=7.83.1
+  - cutadapt=3.5
+  - dadaist2=1.2.5
+  - dataclasses=0.8
+  - dnaio=0.9.0
+  - expat=2.4.8
+  - fastp=0.23.1
+  - fasttree=2.1.10
+  - font-ttf-dejavu-sans-mono=2.37
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
+  - font-ttf-ubuntu=0.83
+  - fontconfig=2.14.0
+  - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
+  - freetype=2.11.0
+  - fribidi=1.0.10
+  - future=0.18.2
+  - gettext=0.21.0
+  - gfortran_impl_osx-64=9.3.0
+  - gfortran_osx-64=9.3.0
+  - glpk=5.0
+  - gmp=6.2.1
+  - graphite2=1.3.14
+  - gsl=2.7.1
+  - h5py=3.7.0
+  - harfbuzz=4.4.1
+  - hdf5=1.12.1
+  - icu=70.1
+  - isa-l=2.30.0
+  - isl=0.22.1
+  - jbig=2.1
+  - jpeg=9e
+  - krb5=1.19.3
+  - ld64_osx-64=609
+  - lerc=2.2.1
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libclang-cpp14=14.0.4
+  - libcurl=7.83.1
+  - libcxx=14.0.6
+  - libdeflate=1.7
+  - libedit=3.1.20210910
+  - libev=4.33
+  - libffi=3.4.2
+  - libgfortran=5.0.0
+  - libgfortran-devel_osx-64=9.3.0
+  - libgfortran5=9.3.0
+  - libglib=2.70.2
+  - libiconv=1.16
+  - libidn2=2.3.2
+  - liblapack=3.9.0
+  - libllvm11=11.1.0
+  - libllvm14=14.0.4
+  - libnghttp2=1.47.0
+  - libopenblas=0.3.20
+  - libpng=1.6.37
+  - libssh2=1.10.0
+  - libtiff=4.3.0
+  - libunistring=0.9.10
+  - libwebp-base=1.2.2
+  - libxml2=2.9.14
+  - libzip=1.9.2
+  - libzlib=1.2.12
+  - llvm-openmp=14.0.4
+  - llvm-tools=14.0.4
+  - lz4-c=1.9.3
+  - make=4.3
+  - mpc=1.2.1
+  - mpfr=4.1.0
+  - ncurses=6.3
+  - numpy=1.23.0
+  - openssl=1.1.1q
+  - pandas=1.3.4
+  - pango=1.50.8
+  - pbzip2=1.1.13
+  - pcre=8.45
+  - pcre2=10.37
+  - perl=5.32.1
+  - perl-capture-tiny=0.48
+  - perl-carp=1.50
+  - perl-exporter=5.74
+  - perl-extutils-makemaker=7.64
+  - perl-fastx-reader=1.5.0
+  - pigz=2.6
+  - pip=22.1.2
+  - pixman=0.40.0
+  - pygments=2.12.0
+  - python=3.9.13
+  - python-dateutil=2.8.2
+  - python-isal=0.11.1
+  - python_abi=3.9
+  - pytz=2022.1
+  - qax=0.9.6
+  - r-ade4=1.7_19
+  - r-ape=5.6_2
+  - r-assertthat=0.2.1
+  - r-backports=1.4.1
+  - r-base=4.0.5
+  - r-bh=1.78.0_0
+  - r-bit=4.0.4
+  - r-bit64=4.0.5
+  - r-bitops=1.0_7
+  - r-blob=1.2.3
+  - r-brio=1.1.3
+  - r-cachem=1.0.6
+  - r-callr=3.7.0
+  - r-cli=3.3.0
+  - r-cluster=2.1.3
+  - r-codetools=0.2_18
+  - r-colorspace=2.0_3
+  - r-crayon=1.5.1
+  - r-data.table=1.14.2
+  - r-dbi=1.1.3
+  - r-deldir=1.0_6
+  - r-desc=1.4.1
+  - r-diffobj=0.3.5
+  - r-digest=0.6.29
+  - r-dplyr=1.0.9
+  - r-ellipsis=0.3.2
+  - r-evaluate=0.15
+  - r-fansi=1.0.3
+  - r-farver=2.1.1
+  - r-fastmap=1.1.0
+  - r-foreach=1.5.2
+  - r-formatr=1.12
+  - r-fs=1.5.2
+  - r-futile.logger=1.4.3
+  - r-futile.options=1.0.1
+  - r-generics=0.1.3
+  - r-ggplot2=3.3.6
+  - r-glue=1.6.2
+  - r-gtable=0.3.0
+  - r-hms=1.1.1
+  - r-hwriter=1.3.2.1
+  - r-igraph=1.3.2
+  - r-interp=1.1_2
+  - r-isoband=0.2.5
+  - r-iterators=1.0.14
+  - r-jpeg=0.1_9
+  - r-jsonlite=1.8.0
+  - r-labeling=0.4.2
+  - r-lambda.r=1.2.4
+  - r-lattice=0.20_45
+  - r-latticeextra=0.6_30
+  - r-lifecycle=1.0.1
+  - r-magrittr=2.0.3
+  - r-mass=7.3_57
+  - r-matrix=1.3_2
+  - r-matrixstats=0.62.0
+  - r-memoise=2.0.1
+  - r-mgcv=1.8_40
+  - r-munsell=0.5.0
+  - r-nlme=3.1_158
+  - r-permute=0.9_7
+  - r-pillar=1.7.0
+  - r-pixmap=0.4_12
+  - r-pkgconfig=2.0.3
+  - r-pkgload=1.3.0
+  - r-plogr=0.2.0
+  - r-plyr=1.8.7
+  - r-png=0.1_7
+  - r-praise=1.0.0
+  - r-prettyunits=1.1.1
+  - r-processx=3.6.1
+  - r-progress=1.2.2
+  - r-ps=1.7.1
+  - r-purrr=0.3.4
+  - r-r6=2.5.1
+  - r-rcolorbrewer=1.1_3
+  - r-rcpp=1.0.8.3
+  - r-rcppeigen=0.3.3.9.2
+  - r-rcppparallel=5.1.5
+  - r-rcurl=1.98_1.7
+  - r-rematch2=2.1.2
+  - r-reshape2=1.4.4
+  - r-rlang=1.0.3
+  - r-rprojroot=2.0.3
+  - r-rsqlite=2.2.8
+  - r-rtsne=0.16
+  - r-scales=1.2.0
+  - r-snow=0.4_4
+  - r-sp=1.5_0
+  - r-stringi=1.7.6
+  - r-stringr=1.4.0
+  - r-survival=3.3_1
+  - r-testthat=3.1.4
+  - r-tibble=3.1.7
+  - r-tidyr=1.2.0
+  - r-tidyselect=1.1.2
+  - r-utf8=1.2.2
+  - r-vctrs=0.4.1
+  - r-vegan=2.6_2
+  - r-viridislite=0.4.0
+  - r-waldo=0.4.0
+  - r-withr=2.5.0
+  - readline=8.1.2
+  - rich=12.4.4
+  - scipy=1.8.1
+  - seqfu=1.12.0
+  - setuptools=59.8.0
+  - sigtool=0.1.3
+  - six=1.16.0
+  - sqlite=3.39.0
+  - tapi=1100.0.11
+  - tk=8.6.12
+  - tktable=2.10
+  - typing_extensions=4.3.0
+  - tzdata=2022a
+  - wget=1.21.3
+  - wheel=0.37.1
+  - xopen=1.5.0
+  - xz=5.2.5
+  - zip=3.0
+  - zlib=1.2.12
+  - zstd=1.5.2
diff --git a/env/dadaist2-1.2.5-Linux.yaml b/env/dadaist2-1.2.5-Linux.yaml
new file mode 100644
index 0000000..a071ba6
--- /dev/null
+++ b/env/dadaist2-1.2.5-Linux.yaml
@@ -0,0 +1,286 @@
+name: dadaist2-1.2.4
+channels:
+  - defaults
+  - bioconda
+  - conda-forge
+dependencies:
+  - _libgcc_mutex=0.1
+  - _openmp_mutex=4.5
+  - _r-mutex=1.0.1
+  - argtable2=2.13
+  - binutils_impl_linux-64=2.36.1
+  - binutils_linux-64=2.36
+  - bioconductor-biobase=2.50.0
+  - bioconductor-biocgenerics=0.36.0
+  - bioconductor-biocparallel=1.24.1
+  - bioconductor-biomformat=1.18.0
+  - bioconductor-biostrings=2.58.0
+  - bioconductor-dada2=1.18.0
+  - bioconductor-decipher=2.18.1
+  - bioconductor-delayedarray=0.16.3
+  - bioconductor-genomeinfodb=1.26.4
+  - bioconductor-genomeinfodbdata=1.2.4
+  - bioconductor-genomicalignments=1.26.0
+  - bioconductor-genomicranges=1.42.0
+  - bioconductor-iranges=2.24.1
+  - bioconductor-matrixgenerics=1.2.1
+  - bioconductor-microbiome=1.12.0
+  - bioconductor-multtest=2.46.0
+  - bioconductor-phyloseq=1.34.0
+  - bioconductor-rhdf5=2.34.0
+  - bioconductor-rhdf5filters=1.2.0
+  - bioconductor-rhdf5lib=1.12.1
+  - bioconductor-rhtslib=1.22.0
+  - bioconductor-rsamtools=2.6.0
+  - bioconductor-s4vectors=0.28.1
+  - bioconductor-shortread=1.48.0
+  - bioconductor-summarizedexperiment=1.20.0
+  - bioconductor-xvector=0.30.0
+  - bioconductor-zlibbioc=1.36.0
+  - biom-format=2.1.10
+  - blas=1.1
+  - bwidget=1.9.14
+  - bzip2=1.0.8
+  - c-ares=1.18.1
+  - ca-certificates=2022.6.15
+  - cached-property=1.5.2
+  - cached_property=1.5.2
+  - cairo=1.16.0
+  - click=8.1.3
+  - clustalo=1.2.4
+  - commonmark=0.9.1
+  - curl=7.83.1
+  - cutadapt=3.5
+  - dadaist2=1.2.5
+  - dataclasses=0.8
+  - dnaio=0.9.0
+  - expat=2.4.8
+  - fastp=0.23.1
+  - fasttree=2.1.10
+  - font-ttf-dejavu-sans-mono=2.37
+  - font-ttf-inconsolata=3.000
+  - font-ttf-source-code-pro=2.038
+  - font-ttf-ubuntu=0.83
+  - fontconfig=2.14.0
+  - fonts-conda-ecosystem=1
+  - fonts-conda-forge=1
+  - freetype=2.11.0
+  - fribidi=1.0.10
+  - future=0.18.2
+  - gcc_impl_linux-64=10.3.0
+  - gcc_linux-64=10.3.0
+  - gettext=0.21.0
+  - gfortran_impl_linux-64=10.3.0
+  - gfortran_linux-64=10.3.0
+  - glpk=5.0
+  - gmp=6.2.1
+  - graphite2=1.3.14
+  - gsl=2.7.1
+  - gxx_impl_linux-64=10.3.0
+  - gxx_linux-64=10.3.0
+  - h5py=3.7.0
+  - harfbuzz=4.4.1
+  - hdf5=1.12.1
+  - icu=70.1
+  - isa-l=2.30.0
+  - jbig=2.1
+  - jpeg=9e
+  - kernel-headers_linux-64=2.6.32
+  - keyutils=1.6.1
+  - krb5=1.19.3
+  - ld_impl_linux-64=2.36.1
+  - lerc=2.2.1
+  - libblas=3.9.0
+  - libcblas=3.9.0
+  - libcurl=7.83.1
+  - libdeflate=1.7
+  - libedit=3.1.20210910
+  - libev=4.33
+  - libffi=3.4.2
+  - libgcc-devel_linux-64=10.3.0
+  - libgcc-ng=12.1.0
+  - libgfortran-ng=12.1.0
+  - libgfortran5=12.1.0
+  - libglib=2.70.2
+  - libgomp=12.1.0
+  - libiconv=1.16
+  - libidn2=2.3.2
+  - liblapack=3.9.0
+  - libnghttp2=1.47.0
+  - libnsl=2.0.0
+  - libopenblas=0.3.20
+  - libpng=1.6.37
+  - libsanitizer=10.3.0
+  - libssh2=1.10.0
+  - libstdcxx-devel_linux-64=10.3.0
+  - libstdcxx-ng=12.1.0
+  - libtiff=4.3.0
+  - libunistring=0.9.10
+  - libuuid=2.32.1
+  - libwebp-base=1.2.2
+  - libxcb=1.13
+  - libxml2=2.9.14
+  - libzip=1.9.2
+  - libzlib=1.2.12
+  - lz4-c=1.9.3
+  - make=4.3
+  - ncurses=6.3
+  - numpy=1.23.0
+  - openblas=0.3.20
+  - openssl=1.1.1q
+  - pandas=1.3.4
+  - pango=1.50.8
+  - pbzip2=1.1.13
+  - pcre=8.45
+  - pcre2=10.37
+  - perl=5.32.1
+  - perl-capture-tiny=0.48
+  - perl-carp=1.50
+  - perl-exporter=5.74
+  - perl-extutils-makemaker=7.64
+  - perl-fastx-reader=1.5.0
+  - pigz=2.6
+  - pip=22.1.2
+  - pixman=0.40.0
+  - pthread-stubs=0.4
+  - pygments=2.12.0
+  - python=3.9.13
+  - python-dateutil=2.8.2
+  - python-isal=0.11.1
+  - python_abi=3.9
+  - pytz=2022.1
+  - qax=0.9.6
+  - r-ade4=1.7_19
+  - r-ape=5.6_2
+  - r-assertthat=0.2.1
+  - r-backports=1.4.1
+  - r-base=4.0.5
+  - r-bh=1.78.0_0
+  - r-bit=4.0.4
+  - r-bit64=4.0.5
+  - r-bitops=1.0_7
+  - r-blob=1.2.3
+  - r-brio=1.1.3
+  - r-cachem=1.0.6
+  - r-callr=3.7.0
+  - r-cli=3.3.0
+  - r-cluster=2.1.3
+  - r-codetools=0.2_18
+  - r-colorspace=2.0_3
+  - r-crayon=1.5.1
+  - r-data.table=1.14.2
+  - r-dbi=1.1.3
+  - r-deldir=1.0_6
+  - r-desc=1.4.1
+  - r-diffobj=0.3.5
+  - r-digest=0.6.29
+  - r-dplyr=1.0.9
+  - r-ellipsis=0.3.2
+  - r-evaluate=0.15
+  - r-fansi=1.0.3
+  - r-farver=2.1.1
+  - r-fastmap=1.1.0
+  - r-foreach=1.5.2
+  - r-formatr=1.12
+  - r-fs=1.5.2
+  - r-futile.logger=1.4.3
+  - r-futile.options=1.0.1
+  - r-generics=0.1.3
+  - r-ggplot2=3.3.6
+  - r-glue=1.6.2
+  - r-gtable=0.3.0
+  - r-hms=1.1.1
+  - r-hwriter=1.3.2.1
+  - r-igraph=1.3.2
+  - r-interp=1.1_2
+  - r-isoband=0.2.5
+  - r-iterators=1.0.14
+  - r-jpeg=0.1_9
+  - r-jsonlite=1.8.0
+  - r-labeling=0.4.2
+  - r-lambda.r=1.2.4
+  - r-lattice=0.20_45
+  - r-latticeextra=0.6_30
+  - r-lifecycle=1.0.1
+  - r-magrittr=2.0.3
+  - r-mass=7.3_57
+  - r-matrix=1.3_2
+  - r-matrixstats=0.62.0
+  - r-memoise=2.0.1
+  - r-mgcv=1.8_40
+  - r-munsell=0.5.0
+  - r-nlme=3.1_158
+  - r-permute=0.9_7
+  - r-pillar=1.7.0
+  - r-pixmap=0.4_12
+  - r-pkgconfig=2.0.3
+  - r-pkgload=1.3.0
+  - r-plogr=0.2.0
+  - r-plyr=1.8.7
+  - r-png=0.1_7
+  - r-praise=1.0.0
+  - r-prettyunits=1.1.1
+  - r-processx=3.6.1
+  - r-progress=1.2.2
+  - r-ps=1.7.1
+  - r-purrr=0.3.4
+  - r-r6=2.5.1
+  - r-rcolorbrewer=1.1_3
+  - r-rcpp=1.0.8.3
+  - r-rcppeigen=0.3.3.9.2
+  - r-rcppparallel=5.1.5
+  - r-rcurl=1.98_1.7
+  - r-rematch2=2.1.2
+  - r-reshape2=1.4.4
+  - r-rlang=1.0.3
+  - r-rprojroot=2.0.3
+  - r-rsqlite=2.2.8
+  - r-rtsne=0.16
+  - r-scales=1.2.0
+  - r-snow=0.4_4
+  - r-sp=1.5_0
+  - r-stringi=1.7.6
+  - r-stringr=1.4.0
+  - r-survival=3.3_1
+  - r-testthat=3.1.4
+  - r-tibble=3.1.7
+  - r-tidyr=1.2.0
+  - r-tidyselect=1.1.2
+  - r-utf8=1.2.2
+  - r-vctrs=0.4.1
+  - r-vegan=2.6_2
+  - r-viridislite=0.4.0
+  - r-waldo=0.4.0
+  - r-withr=2.5.0
+  - readline=8.1.2
+  - rich=12.4.4
+  - scipy=1.8.1
+  - sed=4.8
+  - seqfu=1.12.0
+  - setuptools=59.8.0
+  - six=1.16.0
+  - sqlite=3.39.0
+  - sysroot_linux-64=2.12
+  - tk=8.6.12
+  - tktable=2.10
+  - typing_extensions=4.3.0
+  - tzdata=2022a
+  - wget=1.21.3
+  - wheel=0.37.1
+  - xopen=1.5.0
+  - xorg-kbproto=1.0.7
+  - xorg-libice=1.0.10
+  - xorg-libsm=1.2.3
+  - xorg-libx11=1.7.2
+  - xorg-libxau=1.0.9
+  - xorg-libxdmcp=1.1.3
+  - xorg-libxext=1.3.4
+  - xorg-libxrender=0.9.10
+  - xorg-libxt=1.2.1
+  - xorg-renderproto=0.11.1
+  - xorg-xextproto=7.3.0
+  - xorg-xproto=7.0.31
+  - xz=5.2.5
+  - zip=3.0
+  - zlib=1.2.12
+  - zstd=1.5.2
diff --git a/env/dadaist2_1.2.4_Darwin.yaml b/env/dadaist2_1.2.4_Darwin.yaml
deleted file mode 100644
index c430bdc..0000000
--- a/env/dadaist2_1.2.4_Darwin.yaml
+++ /dev/null
@@ -1,270 +0,0 @@
-name: dadaist2-1.2.4
-channels:
-- defaults
-- conda-forge
-- bioconda
-dependencies:
-- _r-mutex=1.0.1
-- argtable2=2.13
-- bioconductor-biobase=2.50.0
-- bioconductor-biocgenerics=0.36.0
-- bioconductor-biocparallel=1.24.1
-- bioconductor-biomformat=1.18.0
-- bioconductor-biostrings=2.58.0
-- bioconductor-dada2=1.18.0
-- bioconductor-decipher=2.18.1
-- bioconductor-delayedarray=0.16.3
-- bioconductor-genomeinfodb=1.26.4
-- bioconductor-genomeinfodbdata=1.2.4
-- bioconductor-genomicalignments=1.26.0
-- bioconductor-genomicranges=1.42.0
-- bioconductor-iranges=2.24.1
-- bioconductor-matrixgenerics=1.2.1
-- bioconductor-microbiome=1.12.0
-- bioconductor-multtest=2.46.0
-- bioconductor-phyloseq=1.34.0
-- bioconductor-rhdf5=2.34.0
-- bioconductor-rhdf5filters=1.2.0
-- bioconductor-rhdf5lib=1.12.1
-- bioconductor-rhtslib=1.22.0
-- bioconductor-rsamtools=2.6.0
-- bioconductor-s4vectors=0.28.1
-- bioconductor-shortread=1.48.0
-- bioconductor-summarizedexperiment=1.20.0
-- bioconductor-xvector=0.30.0
-- bioconductor-zlibbioc=1.36.0
-- biom-format=2.1.10
-- bwidget=1.9.14
-- bzip2=1.0.8
-- c-ares=1.18.1
-- ca-certificates=2022.6.15
-- cached-property=1.5.2
-- cached_property=1.5.2
-- cairo=1.16.0
-- cctools_osx-64=973.0.1
-- clang=14.0.4
-- clang-14=14.0.4
-- clang_osx-64=14.0.4
-- clangxx=14.0.4
-- clangxx_osx-64=14.0.4
-- click=8.1.3
-- clustalo=1.2.4
-- commonmark=0.9.1
-- compiler-rt=14.0.4
-- compiler-rt_osx-64=14.0.4
-- curl=7.83.1
-- cutadapt=3.5
-- dadaist2=1.2.4
-- dataclasses=0.8
-- dnaio=0.9.0
-- expat=2.4.8
-- fastp=0.23.1
-- fasttree=2.1.10
-- font-ttf-dejavu-sans-mono=2.37
-- font-ttf-inconsolata=3.000
-- font-ttf-source-code-pro=2.038
-- font-ttf-ubuntu=0.83
-- fontconfig=2.14.0
-- fonts-conda-ecosystem=1
-- fonts-conda-forge=1
-- freetype=2.11.0
-- fribidi=1.0.10
-- future=0.18.2
-- gettext=0.21.0
-- gfortran_impl_osx-64=9.3.0
-- gfortran_osx-64=9.3.0
-- glpk=5.0
-- gmp=6.2.1
-- graphite2=1.3.14
-- gsl=2.7.1
-- h5py=3.7.0
-- harfbuzz=4.4.1
-- hdf5=1.12.1
-- icu=70.1
-- isa-l=2.30.0
-- isl=0.22.1
-- jbig=2.1
-- jpeg=9e
-- krb5=1.19.3
-- ld64_osx-64=609
-- lerc=2.2.1
-- libblas=3.9.0
-- libcblas=3.9.0
-- libclang-cpp14=14.0.4
-- libcurl=7.83.1
-- libcxx=14.0.6
-- libdeflate=1.7
-- libedit=3.1.20210910
-- libev=4.33
-- libffi=3.4.2
-- libgfortran=5.0.0
-- libgfortran-devel_osx-64=9.3.0
-- libgfortran5=9.3.0
-- libglib=2.70.2
-- libiconv=1.16
-- libidn2=2.3.2
-- liblapack=3.9.0
-- libllvm11=11.1.0
-- libllvm14=14.0.4
-- libnghttp2=1.47.0
-- libopenblas=0.3.20
-- libpng=1.6.37
-- libssh2=1.10.0
-- libtiff=4.3.0
-- libunistring=0.9.10
-- libwebp-base=1.2.2
-- libxml2=2.9.14
-- libzip=1.9.2
-- libzlib=1.2.12
-- llvm-openmp=14.0.4
-- llvm-tools=14.0.4
-- lz4-c=1.9.3
-- make=4.3
-- mpc=1.2.1
-- mpfr=4.1.0
-- ncurses=6.3
-- numpy=1.23.0
-- openssl=1.1.1q
-- pandas=1.3.4
-- pango=1.50.8
-- pbzip2=1.1.13
-- pcre=8.45
-- pcre2=10.37
-- perl=5.32.1
-- perl-capture-tiny=0.48
-- perl-carp=1.50
-- perl-exporter=5.74
-- perl-extutils-makemaker=7.64
-- perl-fastx-reader=1.5.0
-- pigz=2.6
-- pip=22.1.2
-- pixman=0.40.0
-- pygments=2.12.0
-- python=3.9.13
-- python-dateutil=2.8.2
-- python-isal=0.11.1
-- python_abi=3.9
-- pytz=2022.1
-- qax=0.9.6
-- r-ade4=1.7_19
-- r-ape=5.6_2
-- r-assertthat=0.2.1
-- r-backports=1.4.1
-- r-base=4.0.5
-- r-bh=1.78.0_0
-- r-bit=4.0.4
-- r-bit64=4.0.5
-- r-bitops=1.0_7
-- r-blob=1.2.3
-- r-brio=1.1.3
-- r-cachem=1.0.6
-- r-callr=3.7.0
-- r-cli=3.3.0
-- r-cluster=2.1.3
-- r-codetools=0.2_18
-- r-colorspace=2.0_3
-- r-crayon=1.5.1
-- r-data.table=1.14.2
-- r-dbi=1.1.3
-- r-deldir=1.0_6
-- r-desc=1.4.1
-- r-diffobj=0.3.5
-- r-digest=0.6.29
-- r-dplyr=1.0.9
-- r-ellipsis=0.3.2
-- r-evaluate=0.15
-- r-fansi=1.0.3
-- r-farver=2.1.1
-- r-fastmap=1.1.0
-- r-foreach=1.5.2
-- r-formatr=1.12
-- r-fs=1.5.2
-- r-futile.logger=1.4.3
-- r-futile.options=1.0.1
-- r-generics=0.1.3
-- r-ggplot2=3.3.6
-- r-glue=1.6.2
-- r-gtable=0.3.0
-- r-hms=1.1.1
-- r-hwriter=1.3.2.1
-- r-igraph=1.3.2
-- r-interp=1.1_2
-- r-isoband=0.2.5
-- r-iterators=1.0.14
-- r-jpeg=0.1_9
-- r-jsonlite=1.8.0
-- r-labeling=0.4.2
-- r-lambda.r=1.2.4
-- r-lattice=0.20_45
-- r-latticeextra=0.6_30
-- r-lifecycle=1.0.1
-- r-magrittr=2.0.3
-- r-mass=7.3_57
-- r-matrix=1.3_2
-- r-matrixstats=0.62.0
-- r-memoise=2.0.1
-- r-mgcv=1.8_40
-- r-munsell=0.5.0
-- r-nlme=3.1_158
-- r-permute=0.9_7
-- r-pillar=1.7.0
-- r-pixmap=0.4_12
-- r-pkgconfig=2.0.3
-- r-pkgload=1.3.0
-- r-plogr=0.2.0
-- r-plyr=1.8.7
-- r-png=0.1_7
-- r-praise=1.0.0
-- r-prettyunits=1.1.1
-- r-processx=3.6.1
-- r-progress=1.2.2
-- r-ps=1.7.1
-- r-purrr=0.3.4
-- r-r6=2.5.1
-- r-rcolorbrewer=1.1_3
-- r-rcpp=1.0.8.3
-- r-rcppeigen=0.3.3.9.2
-- r-rcppparallel=5.1.5
-- r-rcurl=1.98_1.7
-- r-rematch2=2.1.2
-- r-reshape2=1.4.4
-- r-rlang=1.0.3
-- r-rprojroot=2.0.3
-- r-rsqlite=2.2.8
-- r-rtsne=0.16
-- r-scales=1.2.0
-- r-snow=0.4_4
-- r-sp=1.5_0
-- r-stringi=1.7.6
-- r-stringr=1.4.0
-- r-survival=3.3_1
-- r-testthat=3.1.4
-- r-tibble=3.1.7
-- r-tidyr=1.2.0
-- r-tidyselect=1.1.2
-- r-utf8=1.2.2
-- r-vctrs=0.4.1
-- r-vegan=2.6_2
-- r-viridislite=0.4.0
-- r-waldo=0.4.0
-- r-withr=2.5.0
-- readline=8.1.2
-- rich=12.4.4
-- scipy=1.8.1
-- seqfu=1.12.0
-- setuptools=59.8.0
-- sigtool=0.1.3
-- six=1.16.0
-- sqlite=3.39.0
-- tapi=1100.0.11
-- tk=8.6.12
-- tktable=2.10
-- typing_extensions=4.3.0
-- tzdata=2022a
-- wget=1.21.3
-- wheel=0.37.1
-- xopen=1.5.0
-- xz=5.2.5
-- zip=3.0
-- zlib=1.2.12
-- zstd=1.5.2
diff --git a/env/dadaist2_1.2.4_Linux.yaml b/env/dadaist2_1.2.4_Linux.yaml
deleted file mode 100644
index 25c4073..0000000
--- a/env/dadaist2_1.2.4_Linux.yaml
+++ /dev/null
@@ -1,287 +0,0 @@
-name: dadaist2-1.2.4
-channels:
-  - defaults
-  - bioconda
-  - conda-forge
-dependencies:
-  - _libgcc_mutex=0.1=conda_forge
-  - _openmp_mutex=4.5=2_gnu
-  - _r-mutex=1.0.1=anacondar_1
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