cloudgene.yaml

id: irida
name: Prepare sample sheet from IRIDA
description: Prepare sample sheet from IRIDA
version: 1.0.0
website: https://github.com/quadram-institute-bioscience/nf-irida
author: Thanh Le Viet
logo: https://avatars.githubusercontent.com/u/37581082?s=48&v=4

workflow:
  steps:
    - name: Get sample sheet from IRIDA
      script: quadram-institute-bioscience/nf-irida
      revision: 1.0.0
      params:
        project: "${project_id}"
        email: "${CLOUDGENE_USER_EMAIL}"
        outdir: "${outdir}"
        merge: "${merge_sample_sheet}"
  
  inputs:
    - id: project_id
      description: Project ID from IRIDA, multiple IDs can be separated by commas
      type: text
      value: "123456"
    - id: merge_sample_sheet
      description: Merge sample sheet from multiple projects
      type: checkbox
      value: false

  outputs:
    - id: outdir
      description: Output
      type: local_folder