From 851ad6ff461a296f61eb748f841719be7609a736 Mon Sep 17 00:00:00 2001 From: Sarah Bastkowski Date: Fri, 13 Dec 2019 11:51:09 +0000 Subject: [PATCH] Adjusted git repo to pull for travis CI. --- .travis.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.travis.yml b/.travis.yml index 8c0d4ac..32d8770 100644 --- a/.travis.yml +++ b/.travis.yml @@ -4,4 +4,4 @@ services: install: - docker pull quadraminstitute/albatradis:latest script: - - docker run --rm -it quadraminstitute/albatradis:latest /bin/sh -c "git clone https://github.com/sbastkowski/albatradis.git && cd albatradis && python3 setup.py test && albatradis -v -a /albatradis/data/albatradis_data/reference_BW25113_short.embl /albatradis/data/albatradis_data/025mgLTricRep1.insert_site_plot_short.gz /albatradis/data/albatradis_data/controlLBrep1.insert_site_plot_short.gz && albatradis-presence_absence /albatradis/data/presence_absence_data/reference_BW25113.embl /albatradis/data/presence_absence_data/gene_report_0008mgL.csv /albatradis/data/presence_absence_data/gene_report_0015mgL.csv /albatradis/data/presence_absence_data/gene_report_003mgL.csv /albatradis/data/presence_absence_data/gene_report_006mgL.csv /albatradis/data/presence_absence_data/gene_report_0125mgL.csv /albatradis/data/presence_absence_data/gene_report_025mgL.csv /albatradis/data/presence_absence_data/gene_report_05mgL.csv /albatradis/data/presence_absence_data/gene_report_1mgL.csv" + - docker run --rm -it quadraminstitute/albatradis:latest /bin/sh -c "git clone https://github.com/quadram-institute-bioscience/albatradis.git && cd albatradis && python3 setup.py test && albatradis -v -a /albatradis/data/albatradis_data/reference_BW25113_short.embl /albatradis/data/albatradis_data/025mgLTricRep1.insert_site_plot_short.gz /albatradis/data/albatradis_data/controlLBrep1.insert_site_plot_short.gz && albatradis-presence_absence /albatradis/data/presence_absence_data/reference_BW25113.embl /albatradis/data/presence_absence_data/gene_report_0008mgL.csv /albatradis/data/presence_absence_data/gene_report_0015mgL.csv /albatradis/data/presence_absence_data/gene_report_003mgL.csv /albatradis/data/presence_absence_data/gene_report_006mgL.csv /albatradis/data/presence_absence_data/gene_report_0125mgL.csv /albatradis/data/presence_absence_data/gene_report_025mgL.csv /albatradis/data/presence_absence_data/gene_report_05mgL.csv /albatradis/data/presence_absence_data/gene_report_1mgL.csv"