diff --git a/README.md b/README.md index 0a0b6b0..f465263 100644 --- a/README.md +++ b/README.md @@ -212,7 +212,9 @@ tradis pipeline create_plots --output_dir plots_output my_fastq_list.txt my_refe The output will be a series of directories for each fastq, containing the plot file for each sequence in the given reference, along with the aligned reads, and some statistics regarding transposon insertion sites both for each sample, and across -all samples. +all samples. The workflow for `tradis pipeline create_plots` is shown in this diagram: + +![create_plots pipeline](docs/pipeline_create_plots.png) A set of plot files can then be analysed in relation to each other using the `tradis pipeline compare` command. For example: @@ -222,6 +224,10 @@ tradis pipeline compare --output_dir analysis_output --annotations my_annotation --control_files cont1.fq.gz cont2.fq.gz ``` +The workflow for `tradis pipeline compare` is shown in this diagram: + +![compare pipeline](docs/pipeline_combine.png) + The `tradis` tool has multiple functions, as shown below, and can also be found using the tools help message `tradis --help`: * `pipeline` @@ -235,17 +241,19 @@ The `tradis` tool has multiple functions, as shown below, and can also be found * `count` - Takes genome annotation in embl format along with plot files produced by "tradis pipeline" and generates tab-delimited files containing gene-wise annotations of insert sites and read counts. * `normalise` - Scales the insertion site counts of plot files based on the sample with the maximum number of reads. * `comparison` - * `analyse` - Comparative analysis of TraDIS experiments whilst also predicting the impact of inserts on nearby genes + * `logfc_plot` - Run logfc analysis for a specific plot file direction: forward, reverse, combined, original over all experiments * `presence_absence` - Take in gene report files and produce a heatmap - * `scatterplot` - Create scatter plot of controls vs conditions + * `figures` - Create graphics of controls vs conditions + * `gene_report` - Generate gene report from logfc_plot analysis data + * `split` - Splits a plot file into forward only, reverse only and combined plot files. + * `essentiality` - Determines how essential each gene is based on the transposon insertion sites + * `essentiality_analysis` - Compares essentiality across condition and control samples + * `prepare_embl` - Prepares an embl annotations file for comparative analysis from a plotfile. If an existing embl file is supplied then genes in that file are expanded based on data from the plot file * `utils` * `index` - Indexes a reference using the specified alignment tool * `extract_names` - Creates a file containing the sequence names in a fasta file * `annotation` - Take in an EMBL file and add flanking 3 prime and 5 prime annotation. * `artemis_project` - Create an artemis project file. Sometimes you want to view the insert site plots in Artemis. It can be quite a manual task to open up different replicates and combinations. This script will generate a project.properties file from a spreadsheet which gets automatically loaded by Artemis (from the current working directory). This then makes it quicker to view multiple different insert site plots. - * `gene_reports` - Manipulate gene_report.csv files, such as performing set operations - * `prepare_embl` - Prepares an embl annotations file for comparative analysis from a plotfile. If an existing embl file is supplied then genes in that file are expanded based on data from the plot file - * `essentiality` - Determines how essential each gene is based on the transposon insertion sites * `tags` * `add` - Generates a BAM file with tags added to read strings. * `check`- Prints 1 if tags are present in alignment file, prints 0 if not. diff --git a/docs/pipeline_combine.png b/docs/pipeline_combine.png new file mode 100644 index 0000000..03cc4de Binary files /dev/null and b/docs/pipeline_combine.png differ diff --git a/docs/pipeline_combine.pu b/docs/pipeline_combine.pu new file mode 100644 index 0000000..477eb89 --- /dev/null +++ b/docs/pipeline_combine.pu @@ -0,0 +1,57 @@ +@startuml + +split + -[hidden]-> + #palegreen: embl; +split again + -[hidden]-> + #palegreen: control plot files; +split again + -[hidden]-> + #palegreen: condition plot files; +end split + +#lightblue:start tradis pipeline compare; + +split +: create count file for +original plot and original embl; +split again +split +:prepare embl file; +split again +: split plot file; +split +#lightyellow:forward; +split again +#lightyellow:reverse; +split again +#lightyellow:combined; +end split +end split +: create count files for split plots +and prepared embl; +end split +split +:run essentiality for +each plot file; +:essentiality analysis; +split again +:compare plot files +create figures; +split again +: logfc comparison; +: create gene report; +end split + +#lightblue: end tradis pipeline compare; + +split + #palegreen: gene report; + kill +split again + #palegreen: figures; + kill +end split + +@enduml \ No newline at end of file diff --git a/docs/pipeline_create_plots.png b/docs/pipeline_create_plots.png new file mode 100644 index 0000000..d819801 Binary files /dev/null and b/docs/pipeline_create_plots.png differ diff --git a/docs/pipeline_create_plots.pu b/docs/pipeline_create_plots.pu new file mode 100644 index 0000000..7096c5d --- /dev/null +++ b/docs/pipeline_create_plots.pu @@ -0,0 +1,40 @@ +@startuml + +split + -[hidden]-> + #palegreen: reference genome; +split again + -[hidden]-> + #palegreen: fastq files; +end split + +#lightblue:start tradis pipeline create_plots; + +split + :samtools index reference (faidx); +split again + :index reference (selected mapping tool); + split + :create plot file for fastq 1; + split again + :create plot file for fastq 2; + split again + :create plot file for fastq n; + end split + :combine stats from plot files; +end split + +#lightblue: end tradis pipeline create_plots; + +split + #palegreen: indexed reference; + kill +split again + #palegreen: plot files; + kill +split again + #palegreen: statistics; + kill +end split + +@enduml \ No newline at end of file diff --git a/quatradis/comparison/cli.py b/quatradis/comparison/cli.py index 7b12e36..b5499be 100644 --- a/quatradis/comparison/cli.py +++ b/quatradis/comparison/cli.py @@ -2,39 +2,54 @@ from quatradis.comparison.scatterplot import scatterplot_run from quatradis.comparison.presence_absence import presence_absence_run -from quatradis.comparison.comparison import prep_essentiality_pipeline_output_for_comparison, run_comparisons, generate_logfc_plot +from quatradis.comparison.comparison import prep_essentiality_pipeline_output_for_comparison, run_comparisons, \ + generate_logfc_plot from quatradis.comparison.gene_stats import gene_statistics from quatradis.comparison.plot_logfc import PlotLogOptions +from quatradis.comparison.split import split_plot as sp +from quatradis.comparison.essentiality import essentiality as ess +from quatradis.embl.prepare import PrepareEMBLFile +from quatradis.comparison.essentiality_analysis import essentiality_analysis as ess_an, EssentialityInput def add_subparser(subparsers): compare_parser_desc = "Comparative analysis and visualisation of TraDIS experiments (albatradis)" compare_parser = subparsers.add_parser("compare", help=compare_parser_desc) compare_subparsers = compare_parser.add_subparsers(title=compare_parser_desc) - create_parser("analyse", compare_subparsers, comparative_analysis, add_compare_options, - "Comparative analysis of TraDIS experiments whilst also predicting the impact of inserts on nearby genes", - usage="tradis compare analyse [options] --condition_dirs + --control_dirs + ") create_parser("logfc_plot", compare_subparsers, logfc_plot, add_logfc_options, "Run logfc analysis for a specific plot file direction: forward, reverse, combined, original over all experiments.", usage="tradis compare logfc_plot [options] --condition_dirs + --control_dirs + ") create_parser("presence_absence", compare_subparsers, presence_absence, add_pa_options, "Take in gene report files and produce a heatmap", usage="tradis compare presence_absence [options] +") - create_parser("figures", compare_subparsers, scatterplot, add_scatterplot_options, + create_parser("figures", compare_subparsers, figures, figures_options, "Create graphics of controls vs conditions", usage="tradis compare figures [options] --controls control1.plot control2.plot --conditions condition1.plot condition2.plot") create_parser("gene_report", compare_subparsers, gene_report, add_genereport_options, "Generate gene report from comparison analysis data", usage="tradis compare gene_report [options] ") + create_parser("split", compare_subparsers, split_plot, split_plot_options, + "Splits a plot file into forward, reverse and combined files", + usage="tradis compare split [options] ") + create_parser("essentiality", compare_subparsers, essentiality, essentiality_utils_options, + "Determines how essential each gene is based on the transposon insertion site plot counts", + usage="tradis compare essentiality [options] ") + create_parser("prepare_embl", compare_subparsers, prepare_embl, prepare_embl_utils_options, + "Prepares an embl annotations file for comparative analysis from a plotfile. If an existing embl file is supplied then genes in that file are expanded based on data from the plot file", + usage="tradis compare prepare_embl [options] ") + create_parser("essentiality_analysis", compare_subparsers, essentiality_analysis, essentiality_analysis_options, + "Compares essentiality across condition and control samples", + usage="tradis compare essentiality_analysis [options] --controls --conditions --ess_controls --ess_conditions ") -def add_compare_options(parser): +def add_logfc_options(parser): parser.add_argument('emblfile', help='Annotation file in EMBL format', type=str) - parser.add_argument('--control_dirs', - help='Directories from essentiality processed control plot files (optionally gzipped). There must be an equal number of condition and control directories', + parser.add_argument('analysis_type', help='Analysis type: forward, reverse, combined, original', type=str) + parser.add_argument('--controls', + help='Control plot files (optionally gzipped). There must be an equal number of condition and control files.', nargs='+', type=str) - parser.add_argument('--condition_dirs', - help='Directories from essentiality processed condition plot files (optionally gzipped). There must be an equal number of condition and control directories', + parser.add_argument('--conditions', + help='Condition plot files (optionally gzipped). There must be an equal number of condition and control files.', nargs='+', type=str) parser.add_argument('--span_gaps', '-s', help='Span a gap if it is this multiple of a window size', type=int, @@ -50,48 +65,21 @@ def add_compare_options(parser): parser.add_argument('--pvalue', '-p', help='Do not report anything above this p-value', type=float, default=0.05) parser.add_argument('--qvalue', '-q', help='Do not report anything above this q-value', type=float, default=0.05) parser.add_argument('--window_size', '-w', help='Window size', type=int, default=100) - parser.add_argument('--dont_report_decreased_insertions', '-r', help="Whether or not to report decreased insertions", action='store_true', default=False) - parser.add_argument('--genome_length', '-g', help="The length of the genome or sequence being analysed", type=int, required=True) - -def comparative_analysis(args, help='', type=str): - - if len(args.control_dirs) != len(args.condition_dirs): - raise "Must have equal number of control and condition essentiality directories to process" - - if len(args.control_dirs) == 0: - raise "Must have at least one control and condition essentiality directory to process" - - controls_all, controls_only_ess, conditions_all, conditions_only_ess = prep_essentiality_pipeline_output_for_comparison(args.control_dirs, args.condition_dirs, 'combined') - - options = PlotLogOptions( - genome_length=args.genome_length, - minimum_logfc=args.minimum_logfc, - maximum_pvalue=args.pvalue, - maximum_qvalue=args.qvalue, - minimum_logcpm=args.minimum_logcpm, - window_size=args.window_size, - span_gaps=args.span_gaps, - report_decreased_insertions=not args.dont_report_decreased_insertions, - minimum_block=args.minimum_block) - - run_comparisons(controls_all, conditions_all, controls_only_ess, conditions_only_ess, args.emblfile, args.prefix, options, args.verbose) + parser.add_argument('--dont_report_decreased_insertions', '-r', + help="Whether or not to report decreased insertions", action='store_true', default=False) + parser.add_argument('--genome_length', '-g', help="The length of the genome or sequence being analysed", type=int, + required=True) - gene_statistics(args.prefix, args.window_size, args.emblfile, args.prefix) - - - -def add_logfc_options(parser): - add_compare_options(parser) - parser.add_argument("analysis_type", help='The type of plot file to analyse: forward, reverse, combined, original', type=str) def logfc_plot(args): - if len(args.control_dirs) != len(args.condition_dirs): - raise "Must have equal number of control and condition essentiality directories to process" + if len(args.controls) != len(args.conditions): + raise "Must have equal number of control and condition files to process" - if len(args.control_dirs) == 0: - raise "Must have at least one control and condition essentiality directory to process" + if len(args.controls) == 0: + raise "Must have at least one control and condition file to process" - controls_all, controls_only_ess, conditions_all, conditions_only_ess = prep_essentiality_pipeline_output_for_comparison(args.control_dirs, args.condition_dirs, args.analysis_type) + #controls_all, controls_only_ess, conditions_all, conditions_only_ess = prep_essentiality_pipeline_output_for_comparison( + # args.control_dirs, args.condition_dirs, args.analysis_type) options = PlotLogOptions( genome_length=args.genome_length, @@ -104,8 +92,7 @@ def logfc_plot(args): report_decreased_insertions=not args.dont_report_decreased_insertions, minimum_block=args.minimum_block) - plotfile, scoresfile = generate_logfc_plot(args.analysis_type, controls_all, conditions_all, - controls_only_ess, conditions_only_ess, + plotfile, scoresfile = generate_logfc_plot(args.analysis_type, args.controls, args.conditions, args.emblfile, args.prefix, options, args.verbose) return plotfile, scoresfile @@ -121,25 +108,88 @@ def presence_absence(args): presence_absence_run(args) -def add_scatterplot_options(parser): +def figures_options(parser): parser.add_argument('--controls', '-c', help='control files (use 2 or more)', type=str, nargs='+') parser.add_argument('--conditions', '-d', help='condition files (use 2 or more)', type=str, nargs='+') parser.add_argument('--window_size', '-w', help='Window size', type=int, default=50) - parser.add_argument('--prefix', '-o', help='Output filename prefix', type=str, default='scatter') - + parser.add_argument('--prefix', '-p', help='Output prefix', type=str, default='figures') parser.add_argument('--normalise', '-n', action='store_true', help='normalise the files', default=False) -def scatterplot(args): +def figures(args): scatterplot_run(args) + def add_genereport_options(parser): - parser.add_argument('comparison_dir', help='Output directory from tradis compare analyse', type=str) parser.add_argument('embl', help='Original EMBL file used for analysis', type=str) + parser.add_argument('--combined', help='Combined plotfile', type=str) + parser.add_argument('--forward', help='Forward plotfile', type=str) + parser.add_argument('--reverse', help='Reverse plotfile', type=str) + parser.add_argument('--scores', help='Combined scores', type=str) parser.add_argument('--window_size', '-w', help='Window size', type=int, default=50) - parser.add_argument('--output_dir', '-o', help='Output filename prefix', type=str, default='gene_report.csv') + parser.add_argument('--output_dir', '-o', help='Output filename prefix', type=str, default='.') parser.add_argument('--annotations', '-a', help='EMBL file used for annotations', type=str) def gene_report(args): - gene_statistics(args.comparison_dir, window_size=args.window_size, embl_file=args.embl, output_dir=args.output_dir, annotation_file=args.annotations) + gene_statistics(combined_plotfile=args.combined, forward_plotfile=args.forward, reverse_plotfile=args.reverse, + combined_scorefile=args.scores, window_size=args.window_size, embl_file=args.embl, output_dir=args.output_dir, + annotation_file=args.annotations) + + +def split_plot_options(parser): + parser.add_argument('plot_file', help='Plot file to split', type=str) + parser.add_argument('--minimum_threshold', '-m', help='Minimum number of insertions required to pass filter', + type=int, default=5) + parser.add_argument('--output_dir', '-o', help='Output directory', type=str, required=True) + parser.add_argument('--gzipped', '-g', help='Whether to output gzipped plot files', action='store_true') + + +def split_plot(args): + sp(args.plot_file, output_dir=args.output_dir, minimum_threshold=args.minimum_threshold, gzipped=args.gzipped) + + +def essentiality_utils_options(parser): + parser.add_argument('count_file', + help='Counts from a transposon insertion site plot file to be used. i.e. generated from "tradis plot count"', + type=str) + + +def essentiality(args): + ess(args.count_file, verbose=args.verbose) + + +def prepare_embl_utils_options(parser): + parser.add_argument('plotfile', help='Transposon insertion site plot file to be used', type=str) + parser.add_argument('--output', '-o', help='Output file path to store the prepared EMBL file', type=str, + default='prepared.embl') + parser.add_argument('--emblfile', '-e', + help='If provided genes in this EMBL annotations file will expanded based on data in the plotfile.', + type=str, default=None) + parser.add_argument('--minimum_threshold', '-m', + help='Only include insert sites with this number or greater insertions', type=int, default=5) + parser.add_argument('--prime_feature_size', '-z', + help='Feature size when adding 5/3 prime block when --use_annotation', type=int, default=198) + parser.add_argument('--window_interval', '-l', help='Window interval', type=int, default=25) + parser.add_argument('--window_size', '-w', help='Window size', type=int, default=100) + + +def prepare_embl(args): + pef = PrepareEMBLFile(args.plotfile, args.minimum_threshold, args.window_size, args.window_interval, + args.prime_feature_size, args.emblfile) + pef.create_file(args.output) + + +def essentiality_analysis(args): + + i = EssentialityInput(args.controls, args.conditions, args.ess_controls, args.ess_conditions) + ess_an(i, args.output_dir, args.type) + + +def essentiality_analysis_options(parser): + parser.add_argument('--controls', '-c', help='control files (use 2 or more)', type=str, nargs='+') + parser.add_argument('--conditions', '-d', help='condition files (use 2 or more)', type=str, nargs='+') + parser.add_argument('--ess_controls', '-e', help='control files (use 2 or more)', type=str, nargs='+') + parser.add_argument('--ess_conditions', '-f', help='condition files (use 2 or more)', type=str, nargs='+') + parser.add_argument('--output_dir', '-o', help='Output directory', type=str, default=".") + parser.add_argument('--type', '-t', help='Analysis type: original, combined, forward, reverse', type=str, required=True) \ No newline at end of file diff --git a/quatradis/comparison/comparison.py b/quatradis/comparison/comparison.py index 8756b28..2b3088b 100644 --- a/quatradis/comparison/comparison.py +++ b/quatradis/comparison/comparison.py @@ -5,7 +5,7 @@ import shutil from quatradis.comparison.plot_logfc import PlotLog -from quatradis.essentiality.essentiality import GeneEssentiality +from quatradis.comparison.essentiality import GeneEssentiality from quatradis.util.file_handle_helpers import ensure_output_dir_exists @@ -18,7 +18,7 @@ def prep_essentiality_pipeline_output_for_comparison(controls_essentiality_outpu for ctl_dir in controls_essentiality_output_dirs: for x in os.walk(ctl_dir): - all = os.path.join(x[0], analysis_type + ".plot.gz.stats.all.tsv") + all = os.path.join(x[0], analysis_type + ".plot.gz.stats.all.csv") essential = os.path.join(x[0], analysis_type + ".plot.gz.stats.essen.csv") if os.path.exists(all): @@ -27,7 +27,7 @@ def prep_essentiality_pipeline_output_for_comparison(controls_essentiality_outpu for con_dir in conditions_essentiality_output_dirs: for x in os.walk(con_dir): - all = os.path.join(x[0], analysis_type + ".plot.gz.stats.all.tsv") + all = os.path.join(x[0], analysis_type + ".plot.gz.stats.all.csv") essential = os.path.join(x[0], analysis_type + ".plot.gz.stats.essen.csv") if os.path.exists(all): @@ -37,38 +37,27 @@ def prep_essentiality_pipeline_output_for_comparison(controls_essentiality_outpu return controls_all, controls_only_ess, conditions_all, conditions_only_ess -def run_comparisons(controls_all, conditions_all, controls_only_ess, conditions_only_ess, annotations, prefix, - comparison_options, verbose): +def run_comparisons(controls_all, conditions_all, annotations, prefix, comparison_options, verbose): if len(controls_all) != len(controls_all): raise Exception("Controls and conditions must have same number of files") - if len(controls_only_ess) != len(conditions_only_ess): - raise Exception("Controls and conditions containing only essential genes must have same number of files") - - if len(controls_all) != len(controls_only_ess): - raise Exception("Number of controls and conditions files must be the same for both all genes and files containing only essential genes") - if verbose: print("Running comparison between condition and control and write plot files and gene report.\n") forward_plotfile, forward_scoresfile = generate_logfc_plot('forward', controls_all, conditions_all, - controls_only_ess, conditions_only_ess, annotations, prefix, comparison_options, verbose) if verbose: print("Forward insertions have been compared.\n") - reverse_plotfile, reverse_scoresfile = generate_logfc_plot('reverse', controls_all, conditions_all, - controls_only_ess, conditions_only_ess, annotations, + reverse_plotfile, reverse_scoresfile = generate_logfc_plot('reverse', controls_all, conditions_all, annotations, prefix, comparison_options, verbose) if verbose: print("Reverse insertions have been compared.\n") - combined_plotfile, combined_scoresfile = generate_logfc_plot('combined', controls_all, conditions_all, - controls_only_ess, conditions_only_ess, annotations, + combined_plotfile, combined_scoresfile = generate_logfc_plot('combined', controls_all, conditions_all, annotations, prefix, comparison_options, verbose) if verbose: print("Combined insertions have been compared.\n") - original_plotfile, original_scoresfile = generate_logfc_plot('original', controls_all, conditions_all, - controls_only_ess, conditions_only_ess, annotations, + original_plotfile, original_scoresfile = generate_logfc_plot('original', controls_all, conditions_all, annotations, prefix, comparison_options, verbose) if verbose: print("Original insertions have been compared.\n") @@ -77,48 +66,43 @@ def run_comparisons(controls_all, conditions_all, controls_only_ess, conditions_ forward_scoresfile, reverse_scoresfile, combined_scoresfile, original_scoresfile -def generate_logfc_plot(analysis_type, controls_all, conditions_all, controls_only_ess, conditions_only_ess, +def generate_logfc_plot(analysis_type, controls_all, conditions_all, annotations, prefix, options, verbose): t = TradisComparisonRunner(conditions_all, controls_all, verbose, options.minimum_block, - conditions_only_ess, - controls_only_ess, analysis_type, prefix) + analysis_type, prefix) t.run() - p = PlotLog(t.output_filename, annotations, options, + p = PlotLog(t.get_report_file_path(), annotations, options, output_plot_filename=os.path.join(prefix, analysis_type + ".logfc.plot"), output_scores_filename=os.path.join(prefix, analysis_type + ".pqvals.plot")) p.construct_plot_file() - # Move temp files to output dir - renamed_csv_file = os.path.join(prefix, analysis_type + ".csv") - shutil.move(t.output_filename, renamed_csv_file) - if verbose: - print("Comparison:\t" + renamed_csv_file) + print("Comparison:\t" + t.get_report_file_path()) print("Plot log:\t" + p.plot_filename) return p.plot_filename, p.scores_filename - - class TradisComparisonRunner: - def __init__(self, condition_files, control_files, verbose, minimum_block, only_ess_files_condition, - only_ess_files_control, analysis_type, prefix, exec="tradis_comparison.R"): + def __init__(self, condition_files, control_files, verbose, minimum_block, analysis_type, prefix, exec="tradis_comparison.R"): self.condition_files = condition_files self.control_files = control_files self.verbose = verbose self.minimum_block = minimum_block - self.only_ess_files_condition = only_ess_files_condition - self.only_ess_files_control = only_ess_files_control self.analysis_type = analysis_type self.prefix = prefix self.check_if_runnable(exec) - fd, self.output_filename = mkstemp() fd, self.conditions_fofn = mkstemp() fd, self.controls_fofn = mkstemp() + def get_report_file_path(self): + return os.path.join(self.prefix, self.analysis_type + ".compare.csv") + + def get_volcano_file_path(self): + return os.path.join(self.prefix, self.analysis_type + ".compare.pdf") + def check_if_runnable(self, exec): r_script = os.path.join(os.path.dirname(__file__), exec) @@ -137,63 +121,6 @@ def check_if_runnable(self, exec): "Can't find Rscript executable. Make sure R is installed and properly configured on your system and try again.") - def gene_names_from_essentiality_file(self, filename): - - with open(filename, 'r') as fileh: - reader = csv.reader(fileh, delimiter=',', quotechar='"') - gene_names = [r[1] for r in reader if r[1] != 'gene_name'] - print("Number of all genes:" + str(len(gene_names))) - - return gene_names - - def get_all_gene_names(self): - - all_gene_names = [] - - for filename in self.condition_files: - with open(filename, 'r') as fileh: - reader = csv.reader(fileh, delimiter='\t', quotechar='"') - gene_names1 = [r[1] for r in reader if r[1] != 'gene_name'] - all_gene_names = list(set(all_gene_names) | set(gene_names1)) - - for f in self.control_files: - with open(filename, 'r') as fileh: - reader = csv.reader(fileh, delimiter='\t', quotechar='"') - gene_names2 = [r[1] for r in reader if r[1] != 'gene_name'] - all_gene_names = list(set(all_gene_names) | set(gene_names2)) - - return all_gene_names - - def all_gene_essentiality(self, input_filename): - - all_gene_names = self.get_all_gene_names() - print("all_gene_names: " + str(len(all_gene_names))) - genes_ess = {g: GeneEssentiality() for g in all_gene_names} - if self.analysis_type == "original": - for f in self.only_ess_files_condition: - ess_gene_names = self.gene_names_from_essentiality_file(f) - print("ess_gene_names condition: " + str(len(ess_gene_names))) - print("genes_ess: " + str(len(genes_ess))) - for e in genes_ess: - if e in ess_gene_names: - genes_ess[e].condition += 1 - genes_ess[e].number_of_reps = len(self.only_ess_files_condition) - for f in self.only_ess_files_control: - ess_gene_names = self.gene_names_from_essentiality_file(f) - print("ess_gene_names control: " + str(len(ess_gene_names))) - print("genes_ess: " + str(len(genes_ess))) - for e in genes_ess: - if e in ess_gene_names: - genes_ess[e].control += 1 - genes_ess[e].number_of_reps = len(self.only_ess_files_control) - else: - for e in genes_ess: - genes_ess[e].control = 0 - genes_ess[e].condition = 0 - genes_ess[e].number_of_reps = len(self.only_ess_files_control) - - return genes_ess - def create_fofn(self): with open(self.conditions_fofn, 'w') as fileh: if len(self.condition_files) == 1: @@ -212,41 +139,10 @@ def create_fofn(self): fileh.write(i + "\n") return self - def add_gene_essentiality_to_file(self, input_filename, output_filename, genes_ess): - - # We can add information on gene essentiality to the comparison output, - # but this will not reflect full set of essential genes as the output does not contain all genes - # In order to prevent confusion this is "switched" off, but could be used if uncommented - - with open(input_filename, 'r') as inputfh: - output_content = [] - - reader = csv.reader(inputfh, delimiter=',', quotechar='"') - input_content = [r for r in reader] - # if self.analysis_type == "original": - # print("Number of cells: " + len(input_content)) - # for i, cells in enumerate(input_content): - # if i == 0: - # cells.append("Essentiality") - # elif cells[1] in genes_ess and not ("3prime" in cells[1] or "5prime" in cells[1]): - # cells.append(genes_ess[cells[1]].status()) - # else: - # cells.append('N/A') - # output_content.append(cells) - # else: - # output_content = input_content - - output_content = input_content - - with open(output_filename, 'w') as outputfh: - for line in output_content: - outputfh.write(",".join(line) + "\n") - return self - def construct_command(self): return " ".join( [self.exec, '-f', '-t', str(self.minimum_block), '--controls', self.controls_fofn, '--conditions', - self.conditions_fofn, '-o', os.path.join(self.prefix, self.analysis_type + ".output.csv"), "-p", os.path.join(self.prefix, self.analysis_type + ".pdf")]) + self.conditions_fofn, '-o', self.get_report_file_path(), "-p", os.path.join(self.prefix, self.analysis_type + ".compare.pdf")]) def run(self): self.create_fofn() @@ -256,23 +152,7 @@ def run(self): ensure_output_dir_exists(self.prefix) - if self.analysis_type != "original": - subprocess.check_output(cmd, shell=True) - - out_csv = os.path.join(self.prefix, self.analysis_type + ".output.csv") - genes_ess = self.all_gene_essentiality(out_csv) - - ess = open(os.path.join(self.prefix, "Essentiality.txt"), "w+") - ess.write("Gene, Essentiality, Control, Condition, Replicates\n") - for e in genes_ess: - ess.write(e + ", " + str(genes_ess[e].status()) + ", " + str(genes_ess[e].control) + ", " + str( - genes_ess[e].condition) + ", " + str(genes_ess[e].number_of_reps) + "\n") - ess.close() - - if self.analysis_type != "original": - self.add_gene_essentiality_to_file(out_csv, self.output_filename, genes_ess) - - os.remove(out_csv) + subprocess.check_output(cmd, shell=True) return self diff --git a/quatradis/comparison/essentiality.py b/quatradis/comparison/essentiality.py new file mode 100644 index 0000000..356fcbb --- /dev/null +++ b/quatradis/comparison/essentiality.py @@ -0,0 +1,82 @@ +import csv +import os +import shutil +import subprocess +from pathlib import Path +from tempfile import mkstemp + +import quatradis.tisp.analyse as tisp_analyse +import quatradis.util.file_handle_helpers as fhh + + +class GeneEssentiality: + def __init__(self): + self.condition = 0 + self.control = 0 + self.number_of_reps = 1 + + def status(self): + + if self.condition == self.number_of_reps and self.control == 0: + return 'conditionally essential' + elif self.condition / self.number_of_reps < 0.5 < self.condition / self.number_of_reps: + return 'probably conditionally essential' + elif self.condition == 0 and self.control == self.number_of_reps: + return 'essential in control' + elif self.control / self.number_of_reps > 0.5 > self.condition / self.number_of_reps: + return 'probably essential in control' + elif self.condition == self.control and self.condition == self.number_of_reps: + return 'always essential' + elif (self.control / self.number_of_reps > 0.5) and (self.condition / self.number_of_reps > 0.5): + return 'probably always essential' + elif self.condition == 0 and self.control == 0: + return 'always non-essential' + elif (self.condition / self.number_of_reps < 0.5) and (self.control / self.number_of_reps < 0.5): + return 'probably always non-essential' + else: + return 'inconsistent replicates' + + +def essentiality(analysis_file, verbose=False): + e = TradisEssentialityRunner(analysis_file, verbose) + e.run() + + +class TradisEssentialityRunner: + def __init__(self, count_file, verbose, exec="tradis_essentiality.R"): + self.count_file = count_file + self.exec = exec + self.verbose = verbose + + self.check_if_runnable(exec) + + def construct_command(self): + return " ".join([self.exec, self.count_file]) + + def check_if_runnable(self, exec): + + r_script = os.path.join(os.path.dirname(__file__), exec) + + if os.path.exists(r_script): + self.exec = r_script + else: + # Otherwise try to find it on the PATH + if not shutil.which(self.exec): + raise Exception("Can't find " + self.exec + " available to execute") + + if not shutil.which("Rscript"): + raise Exception( + "Can't find Rscript executable. Make sure R is installed and properly configured on your system and try again.") + + def run(self): + cmd = self.construct_command() + if self.verbose: + print(cmd) + subprocess.check_output(cmd, shell=True) + + if self.verbose: + print("all.csv\t" + self.count_file + ".all.csv") + print("essen.csv\t" + self.count_file + ".essen.csv") + + return self + diff --git a/quatradis/comparison/essentiality_analysis.py b/quatradis/comparison/essentiality_analysis.py new file mode 100644 index 0000000..1a8942d --- /dev/null +++ b/quatradis/comparison/essentiality_analysis.py @@ -0,0 +1,119 @@ +import csv +import os +from dataclasses import dataclass +from tempfile import mkstemp + +from quatradis.comparison.essentiality import GeneEssentiality + + +@dataclass +class EssentialityInput: + control_files: list + condition_files: list + only_ess_control_files: list + only_ess_condition_files: list + +def gene_names_from_essentiality_file(filename, verbose=False): + with open(filename, 'r') as fileh: + reader = csv.reader(fileh, delimiter=',', quotechar='"') + gene_names = [r[1] for r in reader if r[1] != 'gene_name'] + print("Number of all genes:" + str(len(gene_names))) + + return gene_names + + +def get_all_gene_names(control_files, condition_files): + all_gene_names = set() + + for filename in condition_files: + with open(filename, 'r') as fileh: + reader = csv.reader(fileh, delimiter='\t', quotechar='"') + gene_names1 = [r[1] for r in reader if len(r) > 1 and r[1] != 'gene_name'] + all_gene_names = all_gene_names.union(set(gene_names1)) + + for f in control_files: + with open(filename, 'r') as fileh: + reader = csv.reader(fileh, delimiter='\t', quotechar='"') + gene_names2 = [r[1] for r in reader if len(r) > 1 and r[1] != 'gene_name'] + all_gene_names = all_gene_names.union(set(gene_names2)) + + return list(all_gene_names) + +def all_gene_essentiality(input: EssentialityInput, analysis_type, verbose=False): + + all_gene_names = get_all_gene_names(input.control_files, input.condition_files) + if verbose: + print("# all_gene_names: " + str(len(all_gene_names))) + + genes_ess = {g: GeneEssentiality() for g in all_gene_names} + if analysis_type == "original": + for f in input.only_ess_condition_files: + ess_gene_names = gene_names_from_essentiality_file(f, verbose) + if verbose: + print("ess_gene_names condition: " + str(len(ess_gene_names))) + print("genes_ess: " + str(len(genes_ess))) + for e in genes_ess: + if e in ess_gene_names: + genes_ess[e].condition += 1 + genes_ess[e].number_of_reps = len(input.only_ess_condition_files) + for f in input.only_ess_control_files: + ess_gene_names = gene_names_from_essentiality_file(f, verbose) + if verbose: + print("ess_gene_names control: " + str(len(ess_gene_names))) + print("genes_ess: " + str(len(genes_ess))) + for e in genes_ess: + if e in ess_gene_names: + genes_ess[e].control += 1 + genes_ess[e].number_of_reps = len(input.only_ess_control_files) + else: + for e in genes_ess: + genes_ess[e].control = 0 + genes_ess[e].condition = 0 + genes_ess[e].number_of_reps = len(input.only_ess_control_files) + + return genes_ess + +def add_gene_essentiality_to_file(input_filename, output_filename, genes_ess, analysis_type): + """ + We can add information on gene essentiality to the comparison output, + but this will not reflect full set of essential genes as the output does not contain all genes + In order to prevent confusion this is "switched" off, but could be used if uncommented + """ + with open(input_filename, 'r') as inputfh: + output_content = [] + + reader = csv.reader(inputfh, delimiter=',', quotechar='"') + input_content = [r for r in reader] + # if analysis_type == "original": + # print("Number of cells: " + len(input_content)) + # for i, cells in enumerate(input_content): + # if i == 0: + # cells.append("Essentiality") + # elif cells[1] in genes_ess and not ("3prime" in cells[1] or "5prime" in cells[1]): + # cells.append(genes_ess[cells[1]].status()) + # else: + # cells.append('N/A') + # output_content.append(cells) + # else: + # output_content = input_content + + output_content = input_content + + with open(output_filename, 'w') as outputfh: + for line in output_content: + outputfh.write(",".join(line) + "\n") + + +def essentiality_analysis(input: EssentialityInput, output_dir, analysis_type, output_filename=""): + + #out_csv = mkstemp() + genes_ess = all_gene_essentiality(input, analysis_type) + #add_gene_essentiality_to_file(out_csv, output_filename, genes_ess, analysis_type) + #os.remove(out_csv) + + ess = open(os.path.join(output_dir, "essentiality.csv"), "w+") + ess.write("Gene,Essentiality,Control,Condition,Replicates\n") + for e in genes_ess: + ess.write(",".join([e, str(genes_ess[e].status()), str(genes_ess[e].control), + str(genes_ess[e].condition), str(genes_ess[e].number_of_reps)]) + "\n") + ess.close() diff --git a/quatradis/comparison/gene_stats.py b/quatradis/comparison/gene_stats.py index 848ed5c..234991a 100644 --- a/quatradis/comparison/gene_stats.py +++ b/quatradis/comparison/gene_stats.py @@ -1,4 +1,5 @@ import os +from pathlib import Path from quatradis.gene.block_identifier import BlockIdentifier from quatradis.gene.annotator import GeneAnnotator @@ -7,13 +8,7 @@ from quatradis.util.file_handle_helpers import ensure_output_dir_exists -def gene_statistics(comparison_dir, window_size, embl_file, output_dir="output", annotation_file=None): - - combined_plotfile = os.path.join(comparison_dir, "combined.logfc.plot") - forward_plotfile = os.path.join(comparison_dir, "forward.logfc.plot") - reverse_plotfile = os.path.join(comparison_dir, "reverse.logfc.plot") - - combined_scorefile = os.path.join(comparison_dir, "combined.pqvals.plot") +def gene_statistics(combined_plotfile, forward_plotfile, reverse_plotfile, combined_scorefile, window_size, embl_file, output_dir="output", annotation_file=None): ensure_output_dir_exists(output_dir) @@ -35,12 +30,13 @@ def gene_statistics(comparison_dir, window_size, embl_file, output_dir="output", for g in genes: all_genes.append(g) + report_file = os.path.join(output_dir, "gene_report.tsv") + if len(all_genes) == 0 and len(intergenic_blocks) == 0: print("No significant genes found for chosen parameters.\n") - return [] - write_gene_report(all_genes, intergenic_blocks, os.path.join(output_dir, "gene_report.csv"), use_annotation) - write_regulated_gene_report(all_genes, os.path.join(output_dir, "regulated_gene_report.csv")) + write_gene_report(all_genes, intergenic_blocks, report_file, use_annotation) + write_regulated_gene_report(all_genes, os.path.join(output_dir, "regulated_gene_report.tsv")) # if self.verbose: # self.print_genes_intergenic(genes,intergenic_blocks) @@ -99,7 +95,7 @@ def merge_windows(windows): def write_gene_report(genes, intergenic_blocks, output_filename, use_annotation): with open(output_filename, 'w') as bf: - bf.write(str(genes[0].header()) + "\n") + bf.write(str(Gene.header()) + "\n") if not use_annotation: for i in genes: bf.write(i.window_string() + "\n") @@ -112,11 +108,10 @@ def write_gene_report(genes, intergenic_blocks, output_filename, use_annotation) def write_regulated_gene_report(genes, output_filename): regulated_genes = [g for g in genes if g.category() == 'upregulated' or g.category() == 'downregulated'] - if len(regulated_genes) > 0: - with open(output_filename, 'w') as bf: - bf.write(str(regulated_genes[0].header()) + "\n") - for i in regulated_genes: - bf.write(str(i) + "\n") + with open(output_filename, 'w') as bf: + bf.write(str(Gene.header()) + "\n") + for i in regulated_genes: + bf.write(str(i) + "\n") def print_genes_intergenic_blocks(genes, intergenic_blocks): diff --git a/quatradis/comparison/split.py b/quatradis/comparison/split.py new file mode 100644 index 0000000..d44a903 --- /dev/null +++ b/quatradis/comparison/split.py @@ -0,0 +1,51 @@ +import os + +from quatradis.tisp.generator.from_values import PlotFromValuesGenerator +from quatradis.tisp.parser import PlotParser + + +class SplitPlotFile: + """Used to take in a plot file and split it into forward only, reverse only and combined plot files.""" + + def __init__(self, plotfile, minimum_threshold, gzipped=False, output_dir=None): + self.plotfile = plotfile + self.minimum_threshold = minimum_threshold + self.gzipped = gzipped + self.ext = ".gz" if self.gzipped else "" + self.output_dir = "." if not output_dir else output_dir + + def _construct_file_path(self, type): + return os.path.join(self.output_dir, type + ".plot" + self.ext) + + def get_forward_file_path(self): + return self._construct_file_path("forward") + + def get_reverse_file_path(self): + return self._construct_file_path("reverse") + + def get_combined_file_path(self): + return self._construct_file_path("combined") + + def _create_split_plot_file(self, forward, reverse, filename): + p = PlotFromValuesGenerator(forward, reverse, filename, self.gzipped) + p.construct_file() + + def create_all_files(self): + plot_parser_obj = PlotParser(self.plotfile, self.minimum_threshold) + + os.makedirs(self.output_dir, exist_ok=True) + + self._create_split_plot_file(plot_parser_obj.forward, [], self.get_forward_file_path()) + self._create_split_plot_file([], plot_parser_obj.reverse, self.get_reverse_file_path()) + self._create_split_plot_file(plot_parser_obj.forward, plot_parser_obj.reverse, self.get_combined_file_path()) + return plot_parser_obj.genome_length + + +def split_plot(plot_file, output_dir, minimum_threshold=5, gzipped=True, verbose=False): + p = SplitPlotFile(plot_file, minimum_threshold, gzipped=gzipped, output_dir=output_dir) + length = p.create_all_files() + if verbose: + print("Split plot files. Genome Length: " + str(length)) + print("Forward plot file: " + p.get_forward_file_path()) + print("Reverse plot file: " + p.get_reverse_file_path()) + print("Combined plot file: " + p.get_combined_file_path()) diff --git a/quatradis/comparison/tradis_comparison.R b/quatradis/comparison/tradis_comparison.R index 0a5e2d9..d677a02 100755 --- a/quatradis/comparison/tradis_comparison.R +++ b/quatradis/comparison/tradis_comparison.R @@ -38,7 +38,7 @@ if(! is.null(opt$help) || is.null(opt$controls ) || is.null(opt$conditions ) ) if( is.null(opt$filter)) {opt$filter=FALSE} if( is.null(opt$mincount)) {opt$mincount = 0} -# parse contols and conditions files to lists +# parse controls and conditions files to lists control_files <- scan(opt$controls, what="", sep="\n") condition_files <- scan(opt$conditions, what="", sep="\n") diff --git a/quatradis/essentiality/tradis_essentiality.R b/quatradis/comparison/tradis_essentiality.R similarity index 100% rename from quatradis/essentiality/tradis_essentiality.R rename to quatradis/comparison/tradis_essentiality.R diff --git a/quatradis/essentiality/essentiality.py b/quatradis/essentiality/essentiality.py deleted file mode 100644 index 1250e4e..0000000 --- a/quatradis/essentiality/essentiality.py +++ /dev/null @@ -1,163 +0,0 @@ -import csv -import os -import shutil -import subprocess -from pathlib import Path -from tempfile import mkstemp - -import quatradis.tisp.analyse as tisp_analyse -import quatradis.util.file_handle_helpers as fhh - -from quatradis.essentiality.prepare_plot_files import PrepareInputFiles - -class GeneEssentiality: - def __init__(self): - self.condition = 0 - self.control = 0 - self.number_of_reps = 1 - - def status(self): - - if self.condition == self.number_of_reps and self.control == 0: - return 'conditionally essential' - elif self.condition / self.number_of_reps < 0.5 and self.condition / self.number_of_reps > 0.5: - return 'probably conditionally essential' - elif self.condition == 0 and self.control == self.number_of_reps: - return 'essential in control' - elif self.control / self.number_of_reps > 0.5 and self.condition / self.number_of_reps < 0.5: - return 'probably essential in control' - elif self.condition == self.control and self.condition == self.number_of_reps: - return 'always essential' - elif (self.control / self.number_of_reps > 0.5) and (self.condition / self.number_of_reps > 0.5): - return 'probably always essential' - elif self.condition == 0 and self.control == 0: - return 'always non-essential' - elif (self.condition / self.number_of_reps < 0.5) and (self.control / self.number_of_reps < 0.5): - return 'probably always non-essential' - else: - return 'inconsistent replicates' - -class PlotEssentiality: - def __init__(self, plotfile_obj, gene_insert_sites_filename, tradis_essentiality_filename, type, - only_essential_filename): - self.plotfile_obj = plotfile_obj - self.gene_insert_sites_filename = gene_insert_sites_filename - self.tradis_essentiality_filename = tradis_essentiality_filename - self.only_essential_filename = only_essential_filename - self.type = type - - -class PlotAllEssentiality: - def __init__(self, forward, reverse, combined, original, embl_filename): - self.forward = forward - self.reverse = reverse - self.combined = combined - self.original = original - self.embl_filename = embl_filename - - - - - -def analyse_insert_sites(embl_filename, plotfile, filetype, output_filename=None): - if not output_filename: - fd, output_filename = mkstemp() - analysis_file = tisp_analyse.count_insert_sites(embl_filename, [plotfile], output_dir=os.path.dirname(output_filename), output_suffix=filetype + ".stats") - if analysis_file != output_filename: - shutil.move(analysis_file, output_filename) - return output_filename - - -def essentiality(embl_filename, plotfile, filetype, plotname, prefix="essentiality", verbose=False): - - analysis_file = analyse_insert_sites(embl_filename, plotfile, filetype, prefix+".stats") - - e = TradisEssentialityRunner(analysis_file, verbose, prefix=prefix, analysis_type=filetype) - e.run(plotname) - pe = PlotEssentiality(plotfile, analysis_file, e.output_filename, filetype, e.essential_filename) - - if verbose: - print("Essentiality:\t" + filetype + "\t" + e.output_filename) - - return pe - - -def run_essentiality(prepared_embl, plotfile, output_dir, minimum_threshold, plotname="", original_embl=None, verbose=False): - - if not original_embl: - original_embl = prepared_embl - - if not plotname: - plotname = os.path.basename(plotfile).split(sep=".")[0] - - fhh.ensure_output_dir_exists(output_dir) - - p = PrepareInputFiles(plotfile, minimum_threshold, True) - - p.create_all_files(output_dir) - - f = essentiality(prepared_embl, p.forward_plot_filename, 'forward', plotname, prefix=p.forward_plot_filename, verbose=verbose) - r = essentiality(prepared_embl, p.reverse_plot_filename, 'reverse', plotname, prefix=p.reverse_plot_filename, verbose=verbose) - c = essentiality(prepared_embl, p.combined_plot_filename, 'combined', plotname, prefix=p.combined_plot_filename, verbose=verbose) - o = essentiality(original_embl, plotfile, 'original', plotname, prefix=os.path.join(output_dir, "original.plot.gz"), verbose=verbose) - - return PlotAllEssentiality(f, r, c, o, prepared_embl) - - -class TradisEssentialityRunner: - def __init__(self, tabfile, verbose, exec="tradis_essentiality.R", prefix="", analysis_type=""): - self.tabfile = tabfile - self.exec = exec - self.verbose = verbose - self.prefix = prefix - self.analysis_type = analysis_type - - self.check_if_runnable(exec) - - self.output_filename = tabfile + ".all.tsv" - self.essential_filename = tabfile + ".essen.csv" - - def construct_command(self): - return " ".join([self.exec, self.tabfile]) - - def check_if_runnable(self, exec): - - r_script = os.path.join(os.path.dirname(__file__), exec) - - if os.path.exists(r_script): - self.exec = r_script - else: - # Otherwise try to find it on the PATH - if not shutil.which(self.exec): - raise Exception("Can't find " + self.exec + " available to execute") - - if not shutil.which("Rscript"): - raise Exception("Can't find Rscript executable. Make sure R is installed and properly configured on your system and try again.") - - def run(self, plotname): - cmd = self.construct_command() - if self.verbose: - print(cmd) - subprocess.check_output(cmd, shell=True) - - self.replace_comma_tabs(self.tabfile + ".all.csv", self.output_filename) - - if self.verbose: - print("all.csv\t" + self.output_filename) - print("essen.csv\t" + self.essential_filename) - - if self.analysis_type == "original": - condition_name = os.path.join(self.prefix, plotname + "." + self.analysis_type + ".ess") - os.makedirs(Path(condition_name).parent.absolute(), exist_ok=True) - shutil.copy(self.tabfile + ".essen.csv", condition_name) - - return self - - def replace_comma_tabs(self, input_file, output_file): - with open(input_file, newline='') as csvfile: - comparison_reader = csv.reader(csvfile, delimiter=',') - - with open(output_file, 'w') as outputfh: - for line in comparison_reader: - outputfh.write("\t".join(line) + "\n") - os.remove(input_file) diff --git a/quatradis/essentiality/prepare_plot_files.py b/quatradis/essentiality/prepare_plot_files.py deleted file mode 100644 index e10e9e2..0000000 --- a/quatradis/essentiality/prepare_plot_files.py +++ /dev/null @@ -1,44 +0,0 @@ -import os -from tempfile import mkstemp - -from quatradis.tisp.parser import PlotParser -from quatradis.tisp.generator.from_values import PlotFromValuesGenerator - - -class PrepareInputFiles: - '''Take in the input files, parse them to create new files.''' - - def __init__(self, plotfile, minimum_threshold, gzipped=False): - self.plotfile = plotfile - self.minimum_threshold = minimum_threshold - self.gzipped = gzipped - - self.forward_plot_filename = "" - self.reverse_plot_filename = "" - self.combined_plot_filename = "" - self.original_plot_filename = plotfile - self.embl_filename = "" - - def genome_length(self): - return self.plot_parser_obj.genome_length - - def plot_parser(self): - return PlotParser(self.plotfile, self.minimum_threshold) - - def create_split_plot_file(self, forward, reverse, filename=None): - if not filename: - fd, filename = mkstemp() - p = PlotFromValuesGenerator(forward, reverse, filename, self.gzipped) - p.construct_file() - return filename - - def create_all_files(self, output_dir=None): - self.plot_parser_obj = self.plot_parser() - - ext = "plot" - if self.gzipped: - ext += ".gz" - self.forward_plot_filename = self.create_split_plot_file(self.plot_parser_obj.forward, [], os.path.join(output_dir, "forward."+ext) if output_dir else None) - self.reverse_plot_filename = self.create_split_plot_file([], self.plot_parser_obj.reverse, os.path.join(output_dir, "reverse."+ext) if output_dir else None) - self.combined_plot_filename = self.create_split_plot_file(self.plot_parser_obj.forward, self.plot_parser_obj.reverse, os.path.join(output_dir, "combined."+ext) if output_dir else None) - return self diff --git a/quatradis/pipelines/compare.smk b/quatradis/pipelines/compare.smk index 118ec4e..c977b44 100644 --- a/quatradis/pipelines/compare.smk +++ b/quatradis/pipelines/compare.smk @@ -27,82 +27,153 @@ if not shutil.which('gzcat'): rule finish: input: - expand(os.path.join(config["output_dir"], "gene_report.csv")), - expand(os.path.join(config["output_dir"], "figures", "{type}", "plot_absscatter.png"), type=["forward", "reverse", "combined"]) + expand(os.path.join(config["output_dir"], "gene_report.tsv")), + expand(os.path.join(config["output_dir"], "comparison", "{type}", "plot_absscatter.png"), type=["original", "forward", "reverse", "combined"]), + #expand(os.path.join(config["output_dir"],"comparison","{type}","{type}.compare.csv"), type=["original", "forward", "reverse", "combined"]), + expand(os.path.join(config["output_dir"],"comparison","{type}","essentiality.csv"), type=["original", "forward", "reverse", "combined"]), + expand(os.path.join(config["output_dir"],"analysis","{plot}","{type}.count.tsv.all.csv"), type=["original", "combined", "forward", "reverse"], plot=plotnames) run: print("All done!") -rule prepareEMBL: +rule prepare_embl: input: - plot=config["control_files"][0] + plot=config["control_files"][0], + embl=config["annotations"] output: os.path.join(config["output_dir"], "prepared.embl") message: "Preparing embl annotations file" params: minimum_threshold="--minimum_threshold=" + config["minimum_threshold"] if config["minimum_threshold"] else "", window_size="--window_size=" + config["window_size"] if config["window_size"] else "", window_interval="--window_interval=" + config["window_interval"] if config["window_interval"] else "", - prime_feature_size="--prime_feature_size=" + config["prime_feature_size"] if config["prime_feature_size"] else "", - emblfile="--emblfile=" + config["annotations"] if not config["annotations"]=="None" else "" - shell: "tradis utils prepare_embl --output={output} {params.minimum_threshold} {params.window_size} {params.window_interval} {params.prime_feature_size} {params.emblfile} {input.plot}" + prime_feature_size="--prime_feature_size=" + config["prime_feature_size"] if config["prime_feature_size"] else "" + shell: "tradis compare prepare_embl --output={output} {params.minimum_threshold} {params.window_size} {params.window_interval} {params.prime_feature_size} --emblfile {input.embl} {input.plot}" -rule essentiality: + +rule split_plots: input: - p=lambda wildcards: plot_lut[wildcards.plot], - embl=rules.prepareEMBL.output + p=lambda wildcards: plot_lut[wildcards.plot] output: - os.path.join(config["output_dir"], "essentiality", "{plot}", "combined.plot.gz"), - os.path.join(config["output_dir"], "essentiality", "{plot}", "forward.plot.gz"), - os.path.join(config["output_dir"], "essentiality", "{plot}", "reverse.plot.gz") - message: "Determining gene essentiality for {input}" + c=os.path.join(config["output_dir"], "analysis", "{plot}", "combined.plot.gz"), + f=os.path.join(config["output_dir"], "analysis", "{plot}", "forward.plot.gz"), + r=os.path.join(config["output_dir"], "analysis", "{plot}", "reverse.plot.gz") + message: "Splitting plot file {input.p}" params: - output_dir="--output_dir=" + os.path.join(config["output_dir"], "essentiality", "{plot}".split('.')[0]), + output_dir=os.path.join(config["output_dir"], "analysis", "{plot}"), minimum_threshold="--minimum_threshold=" + config["minimum_threshold"] if config["minimum_threshold"] else "" - shell: "tradis utils essentiality {params.output_dir} {params.minimum_threshold} {input.p} {input.embl}" + shell: "tradis compare split -o {params.output_dir} --gzipped {params.minimum_threshold} {input.p}" + + +rule count_plots: + input: + p=os.path.join(config["output_dir"], "analysis", "{plot}", "{type}.plot.gz"), + embl=rules.prepare_embl.output + output: + os.path.join(config["output_dir"], "analysis", "{plot}", "{type}.count.tsv") + message: "Analysing combined plot and prepared embl file {input.p}, {input.embl}" + params: + output_dir=os.path.join(config["output_dir"], "analysis", "{plot}"), + suffix="count.tsv" + wildcard_constraints: + type="(?!original).*" + shell: "tradis plot count -o {params.output_dir} -s {params.suffix} {input.embl} {input.p}" + + +rule copy_original: + input: + lambda wildcards: plot_lut[wildcards.plot] + output: + os.path.join(config["output_dir"],"analysis","{plot}","original.plot.gz") + message: "Copying original plot file to target folder: {input}" + params: + output_dir=os.path.join(config["output_dir"],"analysis","{plot}") + shell: "if [[ $(file {input} | grep ASCII | wc -l | cut -f 1) > 0 ]]; then gzip -c {input} > {output}; else cp {input} {output}; fi" + + +rule count_original_plots: + input: + p=rules.copy_original.output, + embl=config["annotations"] + output: + os.path.join(config["output_dir"], "analysis", "{plot}", "original.count.tsv") + message: "Analysing original plot and embl file {input.p}, {input.embl}" + params: + output_dir=os.path.join(config["output_dir"], "analysis", "{plot}") + shell: "tradis plot count -o {params.output_dir} -s count.tsv {input.embl} {input.p}" + + +rule essentiality: + input: + c=os.path.join(config["output_dir"], "analysis", "{plot}", "{type}.count.tsv"), + output: + all=os.path.join(config["output_dir"], "analysis", "{plot}", "{type}.count.tsv.all.csv"), + ess=os.path.join(config["output_dir"], "analysis", "{plot}", "{type}.count.tsv.essen.csv") + log: os.path.join(config["output_dir"], "analysis", "{plot}", "{type}.count.tsv.essen.log") + message: "Determining gene essentiality for {input}" + shell: "tradis compare essentiality --verbose {input} > {log} 2>&1" rule plot: input: - controls=lambda wildcards: expand(os.path.join(config["output_dir"],"essentiality","{control}",wildcards.type + ".plot.gz"),control=controlnames), - conditions=lambda wildcards: expand(os.path.join(config["output_dir"],"essentiality","{condition}",wildcards.type + ".plot.gz"),condition=conditionnames), - output: os.path.join(config["output_dir"], "figures", "{type}", "plot_absscatter.png") + controls=lambda wildcards: expand(os.path.join(config["output_dir"],"analysis","{control}",wildcards.type + ".plot.gz"),control=controlnames), + conditions=lambda wildcards: expand(os.path.join(config["output_dir"],"analysis","{condition}",wildcards.type + ".plot.gz"),condition=conditionnames), + output: os.path.join(config["output_dir"], "comparison", "{type}", "plot_absscatter.png") params: typestr=lambda wildcards: wildcards.type, - prefix=lambda wildcards: "--prefix=" + os.path.join(config["output_dir"], "figures", wildcards.type, "plot"), + prefix=lambda wildcards: "--prefix=" + os.path.join(config["output_dir"], "comparison", wildcards.type, "plot"), window_size="--window_size=" + config["window_size"], - controls=lambda wildcards: "--controls " + " ".join(expand(os.path.join(config["output_dir"], "essentiality", "{control}", wildcards.type + ".plot.gz"), control=controlnames)), - conditions=lambda wildcards: "--conditions " + " ".join(expand(os.path.join(config["output_dir"], "essentiality", "{condition}", wildcards.type + ".plot.gz"), condition=conditionnames)) + controls=lambda wildcards: "--controls " + " ".join(expand(os.path.join(config["output_dir"], "analysis", "{control}", wildcards.type + ".plot.gz"), control=controlnames)), + conditions=lambda wildcards: "--conditions " + " ".join(expand(os.path.join(config["output_dir"], "analysis", "{condition}", wildcards.type + ".plot.gz"), condition=conditionnames)) message: "Creating figures for type: {params.typestr}" - shell: "tradis compare figures {params.window_size} {params.prefix} {params.controls} {params.conditions}" + shell: "tradis compare figures {params.window_size} {params.prefix} {params.controls} {params.conditions} > /dev/null 2>&1" rule logfc: input: - controls=lambda wildcards: expand(os.path.join(config["output_dir"], "essentiality", "{control}", wildcards.type + ".plot.gz"), control=controlnames), - conditions=lambda wildcards: expand(os.path.join(config["output_dir"], "essentiality", "{condition}", wildcards.type + ".plot.gz"), condition=conditionnames), - embl=rules.prepareEMBL.output + controls=lambda wildcards: expand(os.path.join(config["output_dir"], "analysis", "{control}", wildcards.tt + ".count.tsv"), control=controlnames), + conditions=lambda wildcards: expand(os.path.join(config["output_dir"], "analysis", "{condition}", wildcards.tt + ".count.tsv"), condition=conditionnames), + embl=rules.prepare_embl.output output: - os.path.join(config["output_dir"], "logfc", "{type}.csv") + os.path.join(config["output_dir"], "comparison", "{tt}", "{tt}.compare.csv"), + os.path.join(config["output_dir"],"comparison","{tt}","{tt}.logfc.plot"), + log: os.path.join(config["output_dir"], "comparison", "{tt}", "logfc.log"), params: - type=lambda wildcards: wildcards.type, - combined=os.path.join(config["output_dir"], "essentiality", controlnames[0], "combined.plot.gz"), - output_dir="--prefix=" + os.path.join(config["output_dir"], "logfc"), - control_dirs="--control_dirs " + " ".join(expand(os.path.join(config["output_dir"], "essentiality", "{control}"), control=controlnames)), - condition_dirs="--condition_dirs " + " ".join(expand(os.path.join(config["output_dir"],"essentiality","{condition}"),condition=conditionnames)), + tt=lambda wildcards: wildcards.tt, + combined=os.path.join(config["output_dir"], "analysis", controlnames[0], "combined.plot.gz"), + output_dir="--prefix=" + os.path.join(config["output_dir"], "comparison", "{tt}"), zcat=ZCAT_CMD message: "Calculating logfc for {output}" - shell: "SEQLENGTH=$({params.zcat} {params.combined} | wc -l); tradis compare logfc_plot {input.embl} {params.type} {params.output_dir} -g $SEQLENGTH {params.control_dirs} {params.condition_dirs}" + shell: "SEQLENGTH=$({params.zcat} {params.combined} | wc -l); tradis compare logfc_plot {input.embl} {params.tt} {params.output_dir} -g ${{SEQLENGTH}} --verbose --controls {input.controls} --conditions {input.conditions} > {log} 2>&1" rule gene_stats: input: - combined=expand(os.path.join(config["output_dir"], "logfc", "{type}.csv"), type=["forward", "reverse", "combined"]), - embl=rules.prepareEMBL.output - output: os.path.join(config["output_dir"], "gene_report.csv") + combined=os.path.join(config["output_dir"], "comparison", "combined", "combined.logfc.plot"), + forward=os.path.join(config["output_dir"],"comparison","forward","forward.logfc.plot"), + rev=os.path.join(config["output_dir"],"comparison","reverse","reverse.logfc.plot"), + embl=rules.prepare_embl.output + output: os.path.join(config["output_dir"], "gene_report.tsv") params: - input_dir=os.path.join(config["output_dir"], "logfc"), + input_dir=os.path.join(config["output_dir"], "comparison"), output_dir="--output_dir=" + config["output_dir"], window_size="--window_size=" + config["window_size"], - annotations="--annotations=" + config["annotations"] if not config["annotations"]=="None" else "" + annotations="--annotations=" + config["annotations"] if not config["annotations"]=="None" else "", + scores="--scores=" + os.path.join(config["output_dir"],"comparison","combined","combined.pqvals.plot") message: "Creating gene report" - shell: "tradis compare gene_report {params.window_size} {params.output_dir} {params.input_dir} {params.annotations} {input.embl}" \ No newline at end of file + shell: "tradis compare gene_report --combined={input.combined} --forward={input.forward} --reverse={input.rev} {params.scores} {params.window_size} {params.output_dir} {params.annotations} {input.embl}" + + +rule essentiality_analysis: + input: + controls = lambda wildcards: expand(os.path.join(config["output_dir"],"analysis","{control}",wildcards.type + ".count.tsv.all.csv"),control=controlnames), + conditions = lambda wildcards: expand(os.path.join(config["output_dir"],"analysis","{condition}",wildcards.type + ".count.tsv.all.csv"),condition=conditionnames), + ess_controls= lambda wildcards: expand(os.path.join(config["output_dir"],"analysis","{control}",wildcards.type + ".count.tsv.essen.csv"),control=controlnames), + ess_conditions=lambda wildcards: expand(os.path.join(config["output_dir"],"analysis","{condition}",wildcards.type + ".count.tsv.essen.csv"),condition=conditionnames) + output: + os.path.join(config["output_dir"], "comparison", "{type}", "essentiality.csv") + log: os.path.join(config["output_dir"],"comparison","{type}","essentiality_analysis.log"), + params: + output_dir = "--output_dir=" + os.path.join(config["output_dir"], "comparison", "{type}"), + t = "--type={type}" + message: "Running essentiality analysis for {output}" + shell: "tradis compare essentiality_analysis {params.output_dir} {params.t} --verbose --controls {input.controls} --conditions {input.conditions} --ess_controls {input.ess_controls} --ess_conditions {input.ess_conditions} > {log} 2>&1" diff --git a/quatradis/pipelines/pipeline.py b/quatradis/pipelines/pipeline.py index 6876da8..2ef30dd 100644 --- a/quatradis/pipelines/pipeline.py +++ b/quatradis/pipelines/pipeline.py @@ -129,7 +129,6 @@ def compare_pipeline(args): ofql.write(create_yaml_option("prime_feature_size", args.prime_feature_size)) ofql.write(create_yaml_option("window_interval", args.window_interval)) ofql.write(create_yaml_option("window_size", args.window_size)) - ofql.write(create_yaml_option("gzipped", "True")) pipeline = find_pipeline_file("compare.smk") @@ -145,7 +144,8 @@ def start_snakemake(snakefile, snakemake_config, threads=1, snakemake_profile=No cmd_list = ["snakemake", "--snakefile=" + snakefile, "--configfile=" + snakemake_config, - "--cores=" + str(threads)] + "--cores=" + str(threads), + "--printshellcmds"] if snakemake_profile: cmd_list.append("--profile=" + snakemake_profile) diff --git a/quatradis/tisp/analyse.py b/quatradis/tisp/analyse.py index 4c35eb6..6d690dc 100644 --- a/quatradis/tisp/analyse.py +++ b/quatradis/tisp/analyse.py @@ -176,7 +176,7 @@ def count_insert_sites(embl_file, plot_files, joined_output=False, output_dir="" trim5=False, trim3=False): """ Take in a plot file(s) and an embl file and produce a tab delimited file with insert site details to use as input to - an another script to test for essentiality. + another script to test for essentiality. """ file_handle_helpers.ensure_output_dir_exists(output_dir) diff --git a/quatradis/tisp/generator/from_values.py b/quatradis/tisp/generator/from_values.py index f791c7a..897341a 100644 --- a/quatradis/tisp/generator/from_values.py +++ b/quatradis/tisp/generator/from_values.py @@ -1,40 +1,44 @@ +import numpy import pyximport + pyximport.install() from quatradis.tisp.write import write_plot_file, write_gzipped_plot_file -import numpy -'''Takes in arrays for forward and reverse integers and creates a new file''' class PlotFromValuesGenerator: - def __init__(self, forward, reverse, filename, gzipped=False): - self.forward = forward - self.reverse = reverse - self.filename = filename - self.gzipped = gzipped - - self.forward_length = len(self.forward) - self.reverse_length = len(self.reverse) - - def construct_file(self): - - p_len = self.plot_length() - if len(self.forward) == 0: - self.forward = numpy.zeros( p_len, dtype=float ) - - if len(self.reverse) == 0: - self.reverse = numpy.zeros( p_len, dtype=float ) - - if self.gzipped: - write_gzipped_plot_file(self.filename, self.forward, self.reverse, p_len) - else: - write_plot_file(self.filename, self.forward, self.reverse, p_len) - - return self - - def plot_length(self): - total_length = self.forward_length - if self.reverse_length > total_length: - total_length = self.reverse_length - - return total_length + """ + Takes in arrays for forward and reverse integers and creates a new file + """ + + def __init__(self, forward, reverse, filename, gzipped=False): + self.forward = forward + self.reverse = reverse + self.filename = filename + self.gzipped = gzipped + + self.forward_length = len(self.forward) + self.reverse_length = len(self.reverse) + + def construct_file(self): + + p_len = self.plot_length() + if len(self.forward) == 0: + self.forward = numpy.zeros(p_len, dtype=float) + + if len(self.reverse) == 0: + self.reverse = numpy.zeros(p_len, dtype=float) + + if self.gzipped: + write_gzipped_plot_file(self.filename, self.forward, self.reverse, p_len) + else: + write_plot_file(self.filename, self.forward, self.reverse, p_len) + + return self + + def plot_length(self): + total_length = self.forward_length + if self.reverse_length > total_length: + total_length = self.reverse_length + + return total_length diff --git a/quatradis/util/cli.py b/quatradis/util/cli.py index 9468c40..5f04cb9 100644 --- a/quatradis/util/cli.py +++ b/quatradis/util/cli.py @@ -7,9 +7,6 @@ from quatradis.util.parser import create_parser from quatradis.util.mapper import index_reference, extract_sequence_names -from quatradis.embl.prepare import PrepareEMBLFile -from quatradis.essentiality.essentiality import run_essentiality - import quatradis.util.tags as tags def add_subparser(subparsers): @@ -31,16 +28,6 @@ def add_subparser(subparsers): create_parser("artemis_project", utils_subparsers, artemis_project, artemis_project_utils_options, "Create an artemis project file.", usage="tradis utils artemis_project [options] ") - create_parser("gene_reports", utils_subparsers, gene_reports, gene_reports_utils_options, - "Manipulate gene_report.csv files, such as performing set operations", - usage="tradis utils gene_reports [options] +") - create_parser("prepare_embl", utils_subparsers, prepare_embl, prepare_embl_utils_options, - "Prepares an embl annotations file for comparative analysis from a plotfile. If an existing embl file is supplied then genes in that file are expanded based on data from the plot file", - usage="tradis utils prepare_embl [options] ") - create_parser("essentiality", utils_subparsers, essentiality, essentiality_utils_options, - "Determines how essential each gene is based on the transposon insertion site plot", - usage="tradis utils essentiality [options] ") - def index_utils_options(parser): @@ -88,14 +75,6 @@ def artemis_project(args): artemis_project_run(args) -def gene_reports_utils_options(parser): - parser.add_argument('genereports', help='Gene report spreadsheets', nargs='+', type=str) - parser.add_argument('--prefix', '-o', help='Output directory prefix', type=str, default='output') - - -def gene_reports(args): - gene_reports_run(args) - def extract_names_utils_options(parser): parser.add_argument('fasta', help='Fasta file which is to be parsed', type=str) parser.add_argument('--output', '-o', help='Output file path to store the sequence names', type=str, default='sequence_names.txt') @@ -104,34 +83,5 @@ def extract_names_utils_options(parser): def extract_names(args): extract_sequence_names(args.fasta, args.output) -def prepare_embl_utils_options(parser): - parser.add_argument('plotfile', help='Transposon insertion site plot file to be used', type=str) - parser.add_argument('--output', '-o', help='Output file path to store the prepared EMBL file', type=str, default='prepared.embl') - parser.add_argument('--emblfile', '-e', help='If provided genes in this EMBL annotations file will expanded based on data in the plotfile.', type=str, default=None) - parser.add_argument('--minimum_threshold', '-m', - help='Only include insert sites with this number or greater insertions', type=int, default=5) - parser.add_argument('--prime_feature_size', '-z', - help='Feature size when adding 5/3 prime block when --use_annotation', type=int, default=198) - parser.add_argument('--window_interval', '-l', help='Window interval', type=int, default=25) - parser.add_argument('--window_size', '-w', help='Window size', type=int, default=100) - - -def prepare_embl(args): - pef = PrepareEMBLFile(args.plotfile, args.minimum_threshold, args.window_size, args.window_interval, - args.prime_feature_size, args.emblfile) - pef.create_file(args.output) - -def essentiality_utils_options(parser): - parser.add_argument('plotfile', help='Transposon insertion site plot file to be used', type=str) - parser.add_argument('emblfile', help='EMBL file containing gene annotations', type=str) - parser.add_argument('--original_emblfile', '-e', - help='If provided we will use this when analysing the original plot file, otherwise we used the mandatory embl file for all analyses.', - type=str, default=None) - parser.add_argument('--output_dir', '-o', help='Output directory for generated files', type=str, - default='prepared') - parser.add_argument('--minimum_threshold', '-m', - help='Only include insert sites with this number or greater insertions', type=int, - default=5) - -def essentiality(args): - run_essentiality(args.emblfile, args.plotfile, args.output_dir, args.minimum_threshold, original_embl=args.original_emblfile, verbose=args.verbose) + + diff --git a/setup.py b/setup.py index 5bcf141..b10bb7d 100644 --- a/setup.py +++ b/setup.py @@ -20,7 +20,6 @@ def read(fname): packages=['quatradis.artemis', 'quatradis.comparison', 'quatradis.embl', - 'quatradis.essentiality', 'quatradis.gene', 'quatradis.pipelines', 'quatradis.tisp', @@ -35,6 +34,6 @@ def read(fname): }, scripts=['tradis', 'quatradis/comparison/tradis_comparison.R', - 'quatradis/essentiality/tradis_essentiality.R', + 'quatradis/comparison/tradis_essentiality.R', 'quatradis/pipelines/create_plots.smk', 'quatradis/pipelines/compare.smk']) \ No newline at end of file diff --git a/tests/data/comparison/essentiality/combined.count.tsv b/tests/data/comparison/essentiality/combined.count.tsv new file mode 100644 index 0000000..f89af41 --- /dev/null +++ b/tests/data/comparison/essentiality/combined.count.tsv @@ -0,0 +1,14914 @@ +locus_tag gene_name ncrna start end strand read_count ins_index gene_length ins_count fcn +BW25113_0001 thrL 0 190 255 1 247 0.19696969696969696 66 13 "thr operon leader peptide" +BW25113_0001__5prime thrL__5prime 0 2 189 1 600 0.09574468085106383 188 18 "thr operon leader peptide" +BW25113_0001__3prime thrL__3prime 0 256 453 1 299 0.08585858585858586 198 17 "thr operon leader peptide" +BW25113_0002 thrA 0 337 2799 1 7085 0.12302070645554203 2463 303 "Bifunctional aspartokinase/homoserine dehydrogenase 1" +BW25113_0002__5prime thrA__5prime 0 139 336 1 773 0.16161616161616163 198 32 "Bifunctional aspartokinase/homoserine dehydrogenase 1" +BW25113_0002__3prime thrA__3prime 0 2800 2997 1 1426 0.17676767676767677 198 35 "Bifunctional aspartokinase/homoserine dehydrogenase 1" +BW25113_0003 thrB 0 2801 3733 1 4233 0.15434083601286175 933 144 "homoserine kinase" +BW25113_0003__5prime thrB__5prime 0 2603 2800 1 563 0.14646464646464646 198 29 "homoserine kinase" +BW25113_0003__3prime thrB__3prime 0 3734 3931 1 338 0.11616161616161616 198 23 "homoserine kinase" +BW25113_0004 thrC 0 3734 5020 1 3415 0.1111111111111111 1287 143 "L-threonine synthase" +BW25113_0004__5prime thrC__5prime 0 3536 3733 1 644 0.12121212121212122 198 24 "L-threonine synthase" +BW25113_0004__3prime thrC__3prime 0 5021 5218 1 150 0.07575757575757576 198 15 "L-threonine synthase" +BW25113_0005 yaaX 0 5234 5530 1 1151 0.1919191919191919 297 57 "DUF2502 family putative periplasmic protein" +BW25113_0005__5prime yaaX__5prime 0 5036 5233 1 152 0.07575757575757576 198 15 "DUF2502 family putative periplasmic protein" +BW25113_0005__3prime yaaX__3prime 0 5531 5728 1 383 0.12121212121212122 198 24 "DUF2502 family putative periplasmic protein" +5564_5669 5564_5669 0 5565 5669 1 106 0.06666666666666667 105 7 "5564_5669" +5564_5669__5prime 5564_5669__5prime 0 5367 5564 1 606 0.13131313131313133 198 26 "5564_5669" +5564_5669__3prime 5564_5669__3prime 0 5670 5867 1 515 0.10606060606060606 198 21 "5564_5669" +BW25113_0006 yaaA 0 5683 6459 -1 2530 0.14285714285714285 777 111 "peroxide resistance protein and lowers intracellular iron" +BW25113_0006__5prime yaaA__5prime 0 6460 6657 -1 748 0.11616161616161616 198 23 "peroxide resistance protein and lowers intracellular iron" +BW25113_0006__3prime yaaA__3prime 0 5485 5682 -1 398 0.1111111111111111 198 22 "peroxide resistance protein and lowers intracellular iron" +BW25113_0007 yaaJ 0 6529 7959 -1 5125 0.13277428371767994 1431 190 "putative transporter" +BW25113_0007__5prime yaaJ__5prime 0 7960 8157 -1 709 0.20707070707070707 198 41 "putative transporter" +BW25113_0007__3prime yaaJ__3prime 0 6331 6528 -1 434 0.16161616161616163 198 32 "putative transporter" +BW25113_0008 talB 0 8238 9191 1 4836 0.18343815513626835 954 175 "transaldolase B" +BW25113_0008__5prime talB__5prime 0 8040 8237 1 648 0.18686868686868688 198 37 "transaldolase B" +BW25113_0008__3prime talB__3prime 0 9192 9389 1 865 0.22727272727272727 198 45 "transaldolase B" +BW25113_0009 mog 0 9306 9893 1 2323 0.18027210884353742 588 106 "molybdochelatase incorporating molybdenum into molybdopterin" +BW25113_0009__5prime mog__5prime 0 9108 9305 1 789 0.23232323232323232 198 46 "molybdochelatase incorporating molybdenum into molybdopterin" +BW25113_0009__3prime mog__3prime 0 9894 10091 1 1027 0.16161616161616163 198 32 "molybdochelatase incorporating molybdenum into molybdopterin" +BW25113_0010 satP 0 9928 10494 -1 2794 0.1781305114638448 567 101 "succinate-acetate transporter" +BW25113_0010__5prime satP__5prime 0 10495 10692 -1 496 0.13131313131313133 198 26 "succinate-acetate transporter" +BW25113_0010__3prime satP__3prime 0 9730 9927 -1 969 0.16666666666666666 198 33 "succinate-acetate transporter" +BW25113_0011 yaaW 0 10643 11356 -1 2114 0.11764705882352941 714 84 "UPF0174 family protein" +BW25113_0011__5prime yaaW__5prime 0 11357 11554 -1 574 0.16161616161616163 198 32 "UPF0174 family protein" +BW25113_0011__3prime yaaW__3prime 0 10445 10642 -1 406 0.12626262626262627 198 25 "UPF0174 family protein" +BW25113_0013 yaaI 0 11382 11786 -1 1903 0.18765432098765433 405 76 "UPF0412 family protein" +BW25113_0013__5prime yaaI__5prime 0 11787 11984 -1 137 0.045454545454545456 198 9 "UPF0412 family protein" +BW25113_0013__3prime yaaI__3prime 0 11184 11381 -1 542 0.12121212121212122 198 24 "UPF0412 family protein" +BW25113_0014 dnaK 0 12163 14079 1 782 0.026604068857589983 1917 51 "chaperone Hsp70 and with co-chaperone DnaJ" +BW25113_0014__5prime dnaK__5prime 0 11965 12162 1 391 0.12626262626262627 198 25 "chaperone Hsp70 and with co-chaperone DnaJ" +BW25113_0014__3prime dnaK__3prime 0 14080 14277 1 577 0.1717171717171717 198 34 "chaperone Hsp70 and with co-chaperone DnaJ" +BW25113_0015 dnaJ 0 14168 15298 1 4199 0.16180371352785147 1131 183 "chaperone Hsp40 and DnaK co-chaperone" +BW25113_0015__5prime dnaJ__5prime 0 13970 14167 1 361 0.1111111111111111 198 22 "chaperone Hsp40 and DnaK co-chaperone" +BW25113_0015__3prime dnaJ__3prime 0 15299 15496 1 770 0.2222222222222222 198 44 "chaperone Hsp40 and DnaK co-chaperone" +15386_16731 15386_16731 0 15387 16731 1 2987 0.16282527881040892 1345 219 "15386_16731" +15386_16731__5prime 15386_16731__5prime 0 15189 15386 1 793 0.18686868686868688 198 37 "15386_16731" +15386_16731__3prime 15386_16731__3prime 0 16732 16929 1 648 0.1717171717171717 198 34 "15386_16731" +BW25113_0016 insL1 0 15445 16557 1 2047 0.14465408805031446 1113 161 "IS186 transposase" +BW25113_0016__5prime insL1__5prime 0 15247 15444 1 795 0.1919191919191919 198 38 "IS186 transposase" +BW25113_0016__3prime insL1__3prime 0 16558 16755 1 785 0.23232323232323232 198 46 "IS186 transposase" +BW25113_0018 mokC 0 16751 16960 -1 2382 0.24761904761904763 210 52 "regulatory protein for HokC and overlaps CDS of hokC" +BW25113_0018__5prime mokC__5prime 0 16961 17158 -1 1458 0.2878787878787879 198 57 "regulatory protein for HokC and overlaps CDS of hokC" +BW25113_0018__3prime mokC__3prime 0 16553 16750 -1 785 0.23232323232323232 198 46 "regulatory protein for HokC and overlaps CDS of hokC" +BW25113_4412 hokC 0 16751 16903 -1 339 0.11764705882352941 153 18 "toxic membrane protein and small" +BW25113_4412__5prime hokC__5prime 0 16904 17101 -1 3501 0.4595959595959596 198 91 "toxic membrane protein and small" +BW25113_4412__3prime hokC__3prime 0 16553 16750 -1 785 0.23232323232323232 198 46 "toxic membrane protein and small" +BW25113_4413 sokC 0 16952 17006 1 655 0.34545454545454546 55 19 "sRNA antisense regulator blocking mokC and and hence hokC and translation" +BW25113_4413__5prime sokC__5prime 0 16754 16951 1 1949 0.23232323232323232 198 46 "sRNA antisense regulator blocking mokC and and hence hokC and translation" +BW25113_4413__3prime sokC__3prime 0 17007 17204 1 1236 0.2222222222222222 198 44 "sRNA antisense regulator blocking mokC and and hence hokC and translation" +BW25113_0019 nhaA 0 17489 18655 1 4028 0.15509854327335046 1167 181 "sodium-proton antiporter" +BW25113_0019__5prime nhaA__5prime 0 17291 17488 1 860 0.19696969696969696 198 39 "sodium-proton antiporter" +BW25113_0019__3prime nhaA__3prime 0 18656 18853 1 597 0.11616161616161616 198 23 "sodium-proton antiporter" +BW25113_0020 nhaR 0 18715 19620 1 2882 0.15673289183222958 906 142 "transcriptional activator of nhaA" +BW25113_0020__5prime nhaR__5prime 0 18517 18714 1 720 0.14646464646464646 198 29 "transcriptional activator of nhaA" +BW25113_0020__3prime nhaR__3prime 0 19621 19818 1 282 0.09595959595959595 198 19 "transcriptional activator of nhaA" +19795_20563 19795_20563 0 19796 20563 -1 2638 0.24609375 768 189 "19795_20563" +19795_20563__5prime 19795_20563__5prime 0 20564 20761 -1 359 0.05555555555555555 198 11 "19795_20563" +19795_20563__3prime 19795_20563__3prime 0 19598 19795 -1 282 0.09595959595959595 198 19 "19795_20563" +BW25113_0021 insB1 0 19811 20314 -1 1946 0.2638888888888889 504 133 "IS1 transposase B" +BW25113_0021__5prime insB1__5prime 0 20315 20512 -1 648 0.25252525252525254 198 50 "IS1 transposase B" +BW25113_0021__3prime insB1__3prime 0 19613 19810 -1 282 0.09595959595959595 198 19 "IS1 transposase B" +BW25113_0022 insA 0 20233 20508 -1 718 0.20652173913043478 276 57 "IS1 repressor TnpA" +BW25113_0022__5prime insA__5prime 0 20509 20706 -1 405 0.08585858585858586 198 17 "IS1 repressor TnpA" +BW25113_0022__3prime insA__3prime 0 20035 20232 -1 797 0.26262626262626265 198 52 "IS1 repressor TnpA" +BW25113_0023 rpsT 0 20815 21078 -1 12 0.003787878787878788 264 1 "30S ribosomal subunit protein S20" +BW25113_0023__5prime rpsT__5prime 0 21079 21276 -1 158 0.025252525252525252 198 5 "30S ribosomal subunit protein S20" +BW25113_0023__3prime rpsT__3prime 0 20617 20814 -1 359 0.05555555555555555 198 11 "30S ribosomal subunit protein S20" +BW25113_0024 yaaY 0 21181 21399 1 480 0.0776255707762557 219 17 "uncharacterized protein" +BW25113_0024__5prime yaaY__5prime 0 20983 21180 1 0 0.0 198 0 "uncharacterized protein" +BW25113_0024__3prime yaaY__3prime 0 21400 21597 1 101 0.020202020202020204 198 4 "uncharacterized protein" +BW25113_0025 ribF 0 21407 22348 1 84 0.004246284501061571 942 4 "bifunctional riboflavin kinase/FAD synthetase" +BW25113_0025__5prime ribF__5prime 0 21209 21406 1 516 0.09090909090909091 198 18 "bifunctional riboflavin kinase/FAD synthetase" +BW25113_0025__3prime ribF__3prime 0 22349 22546 1 32 0.020202020202020204 198 4 "bifunctional riboflavin kinase/FAD synthetase" +BW25113_0026 ileS 0 22391 25207 1 13 0.0007099751508697196 2817 2 "isoleucyl-tRNA synthetase" +BW25113_0026__5prime ileS__5prime 0 22193 22390 1 92 0.03535353535353535 198 7 "isoleucyl-tRNA synthetase" +BW25113_0026__3prime ileS__3prime 0 25208 25405 1 0 0.0 198 0 "isoleucyl-tRNA synthetase" +BW25113_0027 lspA 0 25207 25701 1 0 0.0 495 0 "prolipoprotein signal peptidase (signal peptidase II)" +BW25113_0027__5prime lspA__5prime 0 25009 25206 1 0 0.0 198 0 "prolipoprotein signal peptidase (signal peptidase II)" +BW25113_0027__3prime lspA__3prime 0 25702 25899 1 230 0.045454545454545456 198 9 "prolipoprotein signal peptidase (signal peptidase II)" +25709_25795 25709_25795 0 25710 25795 1 0 0.0 86 0 "25709_25795" +25709_25795__5prime 25709_25795__5prime 0 25512 25709 1 0 0.0 198 0 "25709_25795" +25709_25795__3prime 25709_25795__3prime 0 25796 25993 1 500 0.13636363636363635 198 27 "25709_25795" +BW25113_0028 fkpB 0 25826 26275 1 682 0.09111111111111111 450 41 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_0028__5prime fkpB__5prime 0 25628 25825 1 0 0.0 198 0 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_0028__3prime fkpB__3prime 0 26276 26473 1 0 0.0 198 0 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_0029 ispH 0 26277 27227 1 5 0.0010515247108307045 951 1 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase and 4Fe-4S protein" +BW25113_0029__5prime ispH__5prime 0 26079 26276 1 108 0.030303030303030304 198 6 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase and 4Fe-4S protein" +BW25113_0029__3prime ispH__3prime 0 27228 27425 1 217 0.06060606060606061 198 12 "4-hydroxy-3-methylbut-2-enyl diphosphate reductase and 4Fe-4S protein" +BW25113_0030 rihC 0 27293 28207 1 2784 0.13989071038251366 915 128 "ribonucleoside hydrolase 3" +BW25113_0030__5prime rihC__5prime 0 27095 27292 1 133 0.03535353535353535 198 7 "ribonucleoside hydrolase 3" +BW25113_0030__3prime rihC__3prime 0 28208 28405 1 21 0.010101010101010102 198 2 "ribonucleoside hydrolase 3" +BW25113_0031 dapB 0 28374 29195 1 13 0.0024330900243309003 822 2 "dihydrodipicolinate reductase" +BW25113_0031__5prime dapB__5prime 0 28176 28373 1 85 0.03535353535353535 198 7 "dihydrodipicolinate reductase" +BW25113_0031__3prime dapB__3prime 0 29196 29393 1 14 0.010101010101010102 198 2 "dihydrodipicolinate reductase" +BW25113_0032 carA 0 29651 30799 1 3273 0.10791993037423847 1149 124 "carbamoyl phosphate synthetase small subunit and glutamine amidotransferase" +BW25113_0032__5prime carA__5prime 0 29453 29650 1 20 0.015151515151515152 198 3 "carbamoyl phosphate synthetase small subunit and glutamine amidotransferase" +BW25113_0032__3prime carA__3prime 0 30800 30997 1 353 0.10101010101010101 198 20 "carbamoyl phosphate synthetase small subunit and glutamine amidotransferase" +BW25113_0033 carB 0 30817 34038 1 10175 0.13097454996896338 3222 422 "carbamoyl-phosphate synthase large subunit" +BW25113_0033__5prime carB__5prime 0 30619 30816 1 1028 0.18181818181818182 198 36 "carbamoyl-phosphate synthase large subunit" +BW25113_0033__3prime carB__3prime 0 34039 34236 1 1823 0.2878787878787879 198 57 "carbamoyl-phosphate synthase large subunit" +BW25113_0034 caiF 0 34300 34695 1 8001 0.4065656565656566 396 161 "cai operon transcriptional activator" +BW25113_0034__5prime caiF__5prime 0 34102 34299 1 1802 0.2878787878787879 198 57 "cai operon transcriptional activator" +BW25113_0034__3prime caiF__3prime 0 34696 34893 1 708 0.12626262626262627 198 25 "cai operon transcriptional activator" +34726_34762 34726_34762 0 34727 34762 1 88 0.16666666666666666 36 6 "34726_34762" +34726_34762__5prime 34726_34762__5prime 0 34529 34726 1 4122 0.35353535353535354 198 70 "34726_34762" +34726_34762__3prime 34726_34762__3prime 0 34763 34960 1 544 0.12121212121212122 198 24 "34726_34762" +BW25113_0035 caiE 0 34781 35371 -1 2249 0.15228426395939088 591 90 "stimulator of CaiD and CaiB enzyme activities" +BW25113_0035__5prime caiE__5prime 0 35372 35569 -1 235 0.0707070707070707 198 14 "stimulator of CaiD and CaiB enzyme activities" +BW25113_0035__3prime caiE__3prime 0 34583 34780 -1 2912 0.29292929292929293 198 58 "stimulator of CaiD and CaiB enzyme activities" +BW25113_0036 caiD 0 35377 36162 -1 4493 0.19083969465648856 786 150 "carnitinyl-CoA dehydratase" +BW25113_0036__5prime caiD__5prime 0 36163 36360 -1 854 0.1717171717171717 198 34 "carnitinyl-CoA dehydratase" +BW25113_0036__3prime caiD__3prime 0 35179 35376 -1 462 0.09595959595959595 198 19 "carnitinyl-CoA dehydratase" +BW25113_0037 caiC 0 36271 37824 -1 6888 0.16666666666666666 1554 259 "putative crotonobetaine/carnitine-CoA ligase" +BW25113_0037__5prime caiC__5prime 0 37825 38022 -1 621 0.16161616161616163 198 32 "putative crotonobetaine/carnitine-CoA ligase" +BW25113_0037__3prime caiC__3prime 0 36073 36270 -1 1349 0.21717171717171718 198 43 "putative crotonobetaine/carnitine-CoA ligase" +BW25113_0038 caiB 0 37898 39115 -1 3756 0.11412151067323481 1218 139 "crotonobetainyl CoA:carnitine CoA transferase" +BW25113_0038__5prime caiB__5prime 0 39116 39313 -1 617 0.16666666666666666 198 33 "crotonobetainyl CoA:carnitine CoA transferase" +BW25113_0038__3prime caiB__3prime 0 37700 37897 -1 298 0.09090909090909091 198 18 "crotonobetainyl CoA:carnitine CoA transferase" +39150_39232 39150_39232 0 39151 39232 1 234 0.1951219512195122 82 16 "39150_39232" +39150_39232__5prime 39150_39232__5prime 0 38953 39150 1 204 0.050505050505050504 198 10 "39150_39232" +39150_39232__3prime 39150_39232__3prime 0 39233 39430 1 674 0.13636363636363635 198 27 "39150_39232" +BW25113_0039 caiA 0 39244 40386 -1 3502 0.12248468941382328 1143 140 "crotonobetaine reductase subunit II and FAD-binding" +BW25113_0039__5prime caiA__5prime 0 40387 40584 -1 409 0.10606060606060606 198 21 "crotonobetaine reductase subunit II and FAD-binding" +BW25113_0039__3prime caiA__3prime 0 39046 39243 -1 311 0.1111111111111111 198 22 "crotonobetaine reductase subunit II and FAD-binding" +BW25113_0040 caiT 0 40417 41931 -1 12144 0.20132013201320131 1515 305 "putative transporter" +BW25113_0040__5prime caiT__5prime 0 41932 42129 -1 383 0.11616161616161616 198 23 "putative transporter" +BW25113_0040__3prime caiT__3prime 0 40219 40416 -1 177 0.050505050505050504 198 10 "putative transporter" +BW25113_0041 fixA 0 42403 43173 1 5766 0.18028534370946822 771 139 "anaerobic carnitine reduction putative electron transfer flavoprotein subunit" +BW25113_0041__5prime fixA__5prime 0 42205 42402 1 144 0.045454545454545456 198 9 "anaerobic carnitine reduction putative electron transfer flavoprotein subunit" +BW25113_0041__3prime fixA__3prime 0 43174 43371 1 815 0.1414141414141414 198 28 "anaerobic carnitine reduction putative electron transfer flavoprotein subunit" +BW25113_0042 fixB 0 43188 44129 1 3169 0.1305732484076433 942 123 "putative electron transfer flavoprotein and NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein" +BW25113_0042__5prime fixB__5prime 0 42990 43187 1 277 0.07575757575757576 198 15 "putative electron transfer flavoprotein and NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein" +BW25113_0042__3prime fixB__3prime 0 44130 44327 1 403 0.09595959595959595 198 19 "putative electron transfer flavoprotein and NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein" +BW25113_0043 fixC 0 44180 45466 1 2805 0.09867909867909867 1287 127 "putative oxidoreductase" +BW25113_0043__5prime fixC__5prime 0 43982 44179 1 172 0.08080808080808081 198 16 "putative oxidoreductase" +BW25113_0043__3prime fixC__3prime 0 45467 45664 1 240 0.08080808080808081 198 16 "putative oxidoreductase" +BW25113_0044 fixX 0 45463 45750 1 530 0.1111111111111111 288 32 "putative 4Fe-4S ferredoxin-type protein" +BW25113_0044__5prime fixX__5prime 0 45265 45462 1 409 0.12121212121212122 198 24 "putative 4Fe-4S ferredoxin-type protein" +BW25113_0044__3prime fixX__3prime 0 45751 45948 1 524 0.11616161616161616 198 23 "putative 4Fe-4S ferredoxin-type protein" +BW25113_0045 yaaU 0 45807 47138 1 3879 0.11486486486486487 1332 153 "putative transporter" +BW25113_0045__5prime yaaU__5prime 0 45609 45806 1 454 0.13636363636363635 198 27 "putative transporter" +BW25113_0045__3prime yaaU__3prime 0 47139 47336 1 638 0.1111111111111111 198 22 "putative transporter" +BW25113_0046 kefF 0 47246 47776 1 1952 0.1318267419962335 531 70 "potassium-efflux system ancillary protein for KefC and glutathione-regulated; quinone oxidoreductase and FMN-dependent" +BW25113_0046__5prime kefF__5prime 0 47048 47245 1 196 0.08080808080808081 198 16 "potassium-efflux system ancillary protein for KefC and glutathione-regulated; quinone oxidoreductase and FMN-dependent" +BW25113_0046__3prime kefF__3prime 0 47777 47974 1 937 0.24242424242424243 198 48 "potassium-efflux system ancillary protein for KefC and glutathione-regulated; quinone oxidoreductase and FMN-dependent" +BW25113_0047 kefC 0 47769 49631 1 4962 0.12184648416532474 1863 227 "potassium:proton antiporter" +BW25113_0047__5prime kefC__5prime 0 47571 47768 1 267 0.0707070707070707 198 14 "potassium:proton antiporter" +BW25113_0047__3prime kefC__3prime 0 49632 49829 1 336 0.07575757575757576 198 15 "potassium:proton antiporter" +BW25113_0048 folA 0 49823 50302 1 19 0.00625 480 3 "dihydrofolate reductase" +BW25113_0048__5prime folA__5prime 0 49625 49822 1 416 0.09595959595959595 198 19 "dihydrofolate reductase" +BW25113_0048__3prime folA__3prime 0 50303 50500 1 341 0.08585858585858586 198 17 "dihydrofolate reductase" +50326_50363 50326_50363 0 50327 50363 1 18 0.05405405405405406 37 2 "50326_50363" +50326_50363__5prime 50326_50363__5prime 0 50129 50326 1 28 0.020202020202020204 198 4 "50326_50363" +50326_50363__3prime 50326_50363__3prime 0 50364 50561 1 334 0.08585858585858586 198 17 "50326_50363" +BW25113_0049 apaH 0 50380 51222 -1 1553 0.0830367734282325 843 70 "diadenosine tetraphosphatase" +BW25113_0049__5prime apaH__5prime 0 51223 51420 -1 577 0.12626262626262627 198 25 "diadenosine tetraphosphatase" +BW25113_0049__3prime apaH__3prime 0 50182 50379 -1 46 0.030303030303030304 198 6 "diadenosine tetraphosphatase" +BW25113_0050 apaG 0 51229 51606 -1 1154 0.12433862433862433 378 47 "protein associated with Co2+ and Mg2+ efflux" +BW25113_0050__5prime apaG__5prime 0 51607 51804 -1 399 0.10101010101010101 198 20 "protein associated with Co2+ and Mg2+ efflux" +BW25113_0050__3prime apaG__3prime 0 51031 51228 -1 200 0.05555555555555555 198 11 "protein associated with Co2+ and Mg2+ efflux" +BW25113_0051 rsmA 0 51609 52430 -1 1339 0.08029197080291971 822 66 "16S rRNA m(6)A1518 and m(6)A1519 dimethyltransferase and SAM-dependent" +BW25113_0051__5prime rsmA__5prime 0 52431 52628 -1 193 0.06060606060606061 198 12 "16S rRNA m(6)A1518 and m(6)A1519 dimethyltransferase and SAM-dependent" +BW25113_0051__3prime rsmA__3prime 0 51411 51608 -1 691 0.1414141414141414 198 28 "16S rRNA m(6)A1518 and m(6)A1519 dimethyltransferase and SAM-dependent" +BW25113_0052 pdxA 0 52427 53416 -1 3025 0.12626262626262627 990 125 "4-hydroxy-L-threonine phosphate dehydrogenase and NAD-dependent" +BW25113_0052__5prime pdxA__5prime 0 53417 53614 -1 475 0.12121212121212122 198 24 "4-hydroxy-L-threonine phosphate dehydrogenase and NAD-dependent" +BW25113_0052__3prime pdxA__3prime 0 52229 52426 -1 452 0.12626262626262627 198 25 "4-hydroxy-L-threonine phosphate dehydrogenase and NAD-dependent" +BW25113_0053 surA 0 53416 54702 -1 3447 0.10644910644910645 1287 137 "peptidyl-prolyl cis-trans isomerase (PPIase)" +BW25113_0053__5prime surA__5prime 0 54703 54900 -1 395 0.12626262626262627 198 25 "peptidyl-prolyl cis-trans isomerase (PPIase)" +BW25113_0053__3prime surA__3prime 0 53218 53415 -1 883 0.13131313131313133 198 26 "peptidyl-prolyl cis-trans isomerase (PPIase)" +BW25113_0054 lptD 0 54755 57109 -1 309 0.008067940552016985 2355 19 "LPS assembly OM complex LptDE and beta-barrel component" +BW25113_0054__5prime lptD__5prime 0 57110 57307 -1 1158 0.17676767676767677 198 35 "LPS assembly OM complex LptDE and beta-barrel component" +BW25113_0054__3prime lptD__3prime 0 54557 54754 -1 334 0.06060606060606061 198 12 "LPS assembly OM complex LptDE and beta-barrel component" +BW25113_0055 djlA 0 57364 58179 1 4931 0.17647058823529413 816 144 "membrane-anchored DnaK co-chaperone and DNA-binding protein" +BW25113_0055__5prime djlA__5prime 0 57166 57363 1 965 0.16161616161616163 198 32 "membrane-anchored DnaK co-chaperone and DNA-binding protein" +BW25113_0055__3prime djlA__3prime 0 58180 58377 1 5740 0.40404040404040403 198 80 "membrane-anchored DnaK co-chaperone and DNA-binding protein" +BW25113_4659 yabP 0 58474 59279 1 44227 0.3945409429280397 806 318 "58473_59279" +BW25113_4659__5prime yabP__5prime 0 58276 58473 1 4775 0.31313131313131315 198 62 "58473_59279" +BW25113_4659__3prime yabP__3prime 0 59280 59477 1 7448 0.5757575757575758 198 114 "58473_59279" +BW25113_0058 rluA 0 59687 60346 -1 2840 0.1621212121212121 660 107 "dual specificity 23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase and SAM-dependent" +BW25113_0058__5prime rluA__5prime 0 60347 60544 -1 415 0.13131313131313133 198 26 "dual specificity 23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase and SAM-dependent" +BW25113_0058__3prime rluA__3prime 0 59489 59686 -1 1197 0.20707070707070707 198 41 "dual specificity 23S rRNA pseudouridine(746) and tRNA pseudouridine(32) synthase and SAM-dependent" +BW25113_0059 rapA 0 60358 63264 -1 10533 0.14860681114551083 2907 432 "RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated and ATP-dependent RNA translocase" +BW25113_0059__5prime rapA__5prime 0 63265 63462 -1 763 0.13131313131313133 198 26 "RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated and ATP-dependent RNA translocase" +BW25113_0059__3prime rapA__3prime 0 60160 60357 -1 732 0.13131313131313133 198 26 "RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated and ATP-dependent RNA translocase" +BW25113_0060 polB 0 63429 65780 -1 5688 0.11479591836734694 2352 270 "DNA polymerase II" +BW25113_0060__5prime polB__5prime 0 65781 65978 -1 328 0.10101010101010101 198 20 "DNA polymerase II" +BW25113_0060__3prime polB__3prime 0 63231 63428 -1 878 0.16161616161616163 198 32 "DNA polymerase II" +BW25113_0061 araD 0 65855 66532 -1 1550 0.10176991150442478 678 69 "65854_66532" +BW25113_0061__5prime araD__5prime 0 66533 66730 -1 328 0.12626262626262627 198 25 "65854_66532" +BW25113_0061__3prime araD__3prime 0 65657 65854 -1 606 0.13636363636363635 198 27 "65854_66532" +66527_66528 66527_66528 0 66528 66528 1 0 0.0 1 0 "66527_66528" +66527_66528__5prime 66527_66528__5prime 0 66330 66527 1 514 0.11616161616161616 198 23 "66527_66528" +66527_66528__3prime 66527_66528__3prime 0 66529 66726 1 328 0.12626262626262627 198 25 "66527_66528" +66532_66559 66532_66559 0 66533 66559 1 211 0.5185185185185185 27 14 "66532_66559" +66532_66559__5prime 66532_66559__5prime 0 66335 66532 1 514 0.11616161616161616 198 23 "66532_66559" +66532_66559__3prime 66532_66559__3prime 0 66560 66757 1 167 0.07575757575757576 198 15 "66532_66559" +66775_66776 66775_66776 0 66776 66776 1 0 0.0 1 0 "66775_66776" +66775_66776__5prime 66775_66776__5prime 0 66578 66775 1 136 0.06060606060606061 198 12 "66775_66776" +66775_66776__3prime 66775_66776__3prime 0 66777 66974 1 271 0.045454545454545456 198 9 "66775_66776" +BW25113_0064 araC 0 66874 67752 1 1877 0.09897610921501707 879 87 "ara regulon transcriptional activator; autorepressor" +BW25113_0064__5prime araC__5prime 0 66676 66873 1 264 0.04040404040404041 198 8 "ara regulon transcriptional activator; autorepressor" +BW25113_0064__3prime araC__3prime 0 67753 67950 1 777 0.16666666666666666 198 33 "ara regulon transcriptional activator; autorepressor" +BW25113_0065 yabI 0 67838 68602 1 1622 0.09673202614379085 765 74 "DedA family inner membrane protein" +BW25113_0065__5prime yabI__5prime 0 67640 67837 1 513 0.07575757575757576 198 15 "DedA family inner membrane protein" +BW25113_0065__3prime yabI__3prime 0 68603 68800 1 1638 0.24242424242424243 198 48 "DedA family inner membrane protein" +68622_68707 68622_68707 0 68623 68707 1 335 0.18823529411764706 85 16 "68622_68707" +68622_68707__5prime 68622_68707__5prime 0 68425 68622 1 401 0.09090909090909091 198 18 "68622_68707" +68622_68707__3prime 68622_68707__3prime 0 68708 68905 1 2090 0.2727272727272727 198 54 "68622_68707" +BW25113_0066 thiQ 0 68716 69414 -1 3462 0.1402002861230329 699 98 "thiamine and thiamine pyrophosphate ABC transporter ATPase; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0066__5prime thiQ__5prime 0 69415 69612 -1 611 0.11616161616161616 198 23 "thiamine and thiamine pyrophosphate ABC transporter ATPase; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0066__3prime thiQ__3prime 0 68518 68715 -1 966 0.17676767676767677 198 35 "thiamine and thiamine pyrophosphate ABC transporter ATPase; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0067 thiP 0 69398 71008 -1 5079 0.1340782122905028 1611 216 "thiamine and thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0067__5prime thiP__5prime 0 71009 71206 -1 288 0.07575757575757576 198 15 "thiamine and thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0067__3prime thiP__3prime 0 69200 69397 -1 670 0.07575757575757576 198 15 "thiamine and thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0068 thiB 0 70984 71967 -1 2006 0.09451219512195122 984 93 "thiamine- and thiamine pyrophosphate- and thiamine monophosphate-binding ABC transporter periplasmic protein; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0068__5prime thiB__5prime 0 71968 72165 -1 340 0.045454545454545456 198 9 "thiamine- and thiamine pyrophosphate- and thiamine monophosphate-binding ABC transporter periplasmic protein; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0068__3prime thiB__3prime 0 70786 70983 -1 621 0.18686868686868688 198 37 "thiamine- and thiamine pyrophosphate- and thiamine monophosphate-binding ABC transporter periplasmic protein; ThiBPQ thiamine and thiamine pyrophosphate importer" +BW25113_0069 sgrR 0 72131 73786 -1 5829 0.13103864734299517 1656 217 "transcriptional DNA-binding transcriptional activator of sgrS sRNA" +BW25113_0069__5prime sgrR__5prime 0 73787 73984 -1 593 0.1111111111111111 198 22 "transcriptional DNA-binding transcriptional activator of sgrS sRNA" +BW25113_0069__3prime sgrR__3prime 0 71933 72130 -1 420 0.06060606060606061 198 12 "transcriptional DNA-binding transcriptional activator of sgrS sRNA" +BW25113_4577 sgrS 0 73854 74080 1 779 0.13656387665198239 227 31 "sRNA antisense regulator destabilzes ptsG mRNA and Hfq-dependent; regulated by sgrR" +BW25113_4577__5prime sgrS__5prime 0 73656 73853 1 655 0.0707070707070707 198 14 "sRNA antisense regulator destabilzes ptsG mRNA and Hfq-dependent; regulated by sgrR" +BW25113_4577__3prime sgrS__3prime 0 74081 74278 1 798 0.15151515151515152 198 30 "sRNA antisense regulator destabilzes ptsG mRNA and Hfq-dependent; regulated by sgrR" +BW25113_4662 sgrT 0 73875 74006 1 441 0.14393939393939395 132 19 "inhibitor of glucose uptake" +BW25113_4662__5prime sgrT__5prime 0 73677 73874 1 316 0.06060606060606061 198 12 "inhibitor of glucose uptake" +BW25113_4662__3prime sgrT__3prime 0 74007 74204 1 542 0.11616161616161616 198 23 "inhibitor of glucose uptake" +BW25113_0070 setA 0 74108 75286 1 4986 0.1484308736217133 1179 175 "broad specificity sugar efflux system" +BW25113_0070__5prime setA__5prime 0 73910 74107 1 673 0.13131313131313133 198 26 "broad specificity sugar efflux system" +BW25113_0070__3prime setA__3prime 0 75287 75484 1 1094 0.16666666666666666 198 33 "broad specificity sugar efflux system" +BW25113_0071 leuD 0 75335 75940 -1 1947 0.11716171617161716 606 71 "3-isopropylmalate dehydratase small subunit" +BW25113_0071__5prime leuD__5prime 0 75941 76138 -1 646 0.1111111111111111 198 22 "3-isopropylmalate dehydratase small subunit" +BW25113_0071__3prime leuD__3prime 0 75137 75334 -1 567 0.14646464646464646 198 29 "3-isopropylmalate dehydratase small subunit" +BW25113_0072 leuC 0 75951 77351 -1 4246 0.13204853675945752 1401 185 "3-isopropylmalate dehydratase large subunit" +BW25113_0072__5prime leuC__5prime 0 77352 77549 -1 701 0.16161616161616163 198 32 "3-isopropylmalate dehydratase large subunit" +BW25113_0072__3prime leuC__3prime 0 75753 75950 -1 621 0.13636363636363635 198 27 "3-isopropylmalate dehydratase large subunit" +BW25113_0073 leuB 0 77354 78445 -1 4264 0.14102564102564102 1092 154 "3-isopropylmalate dehydrogenase and NAD(+)-dependent" +BW25113_0073__5prime leuB__5prime 0 78446 78643 -1 1542 0.20202020202020202 198 40 "3-isopropylmalate dehydrogenase and NAD(+)-dependent" +BW25113_0073__3prime leuB__3prime 0 77156 77353 -1 866 0.11616161616161616 198 23 "3-isopropylmalate dehydrogenase and NAD(+)-dependent" +BW25113_0074 leuA 0 78445 80016 -1 6116 0.12086513994910941 1572 190 "2-isopropylmalate synthase" +BW25113_0074__5prime leuA__5prime 0 80017 80214 -1 7195 0.4090909090909091 198 81 "2-isopropylmalate synthase" +BW25113_0074__3prime leuA__3prime 0 78247 78444 -1 907 0.20202020202020202 198 40 "2-isopropylmalate synthase" +BW25113_0075 leuL 0 80109 80195 -1 6222 0.5747126436781609 87 50 "leu operon leader peptide" +BW25113_0075__5prime leuL__5prime 0 80196 80393 -1 2311 0.3686868686868687 198 73 "leu operon leader peptide" +BW25113_0075__3prime leuL__3prime 0 79911 80108 -1 1445 0.2727272727272727 198 54 "leu operon leader peptide" +BW25113_0076 leuO 0 80855 81799 1 23568 0.4624338624338624 945 437 "global transcription factor" +BW25113_0076__5prime leuO__5prime 0 80657 80854 1 2643 0.24242424242424243 198 48 "global transcription factor" +BW25113_0076__3prime leuO__3prime 0 81800 81997 1 1002 0.15656565656565657 198 31 "global transcription factor" +BW25113_0077 ilvI 0 82117 83841 1 7064 0.13507246376811594 1725 233 "acetolactate synthase 3 large subunit" +BW25113_0077__5prime ilvI__5prime 0 81919 82116 1 2601 0.3282828282828283 198 65 "acetolactate synthase 3 large subunit" +BW25113_0077__3prime ilvI__3prime 0 83842 84039 1 86 0.025252525252525252 198 5 "acetolactate synthase 3 large subunit" +BW25113_0078 ilvH 0 83844 84335 1 1254 0.09959349593495935 492 49 "acetolactate synthase 3 and small subunit and valine-sensitive" +BW25113_0078__5prime ilvH__5prime 0 83646 83843 1 946 0.12626262626262627 198 25 "acetolactate synthase 3 and small subunit and valine-sensitive" +BW25113_0078__3prime ilvH__3prime 0 84336 84533 1 501 0.14646464646464646 198 29 "acetolactate synthase 3 and small subunit and valine-sensitive" +BW25113_0080 cra 0 84515 85519 1 2571 0.12437810945273632 1005 125 "transcriptional repressor-activator for carbon metabolism" +BW25113_0080__5prime cra__5prime 0 84317 84514 1 487 0.1414141414141414 198 28 "transcriptional repressor-activator for carbon metabolism" +BW25113_0080__3prime cra__3prime 0 85520 85717 1 1700 0.1919191919191919 198 38 "transcriptional repressor-activator for carbon metabolism" +BW25113_0081 mraZ 0 86121 86579 1 1105 0.11328976034858387 459 52 "RsmH methytransferase inhibitor" +BW25113_0081__5prime mraZ__5prime 0 85923 86120 1 642 0.15151515151515152 198 30 "RsmH methytransferase inhibitor" +BW25113_0081__3prime mraZ__3prime 0 86580 86777 1 82 0.03535353535353535 198 7 "RsmH methytransferase inhibitor" +BW25113_0082 rsmH 0 86581 87522 1 906 0.06050955414012739 942 57 "16S rRNA m(4)C1402 methyltransferase and SAM-dependent" +BW25113_0082__5prime rsmH__5prime 0 86383 86580 1 727 0.09090909090909091 198 18 "16S rRNA m(4)C1402 methyltransferase and SAM-dependent" +BW25113_0082__3prime rsmH__3prime 0 87523 87720 1 49 0.020202020202020204 198 4 "16S rRNA m(4)C1402 methyltransferase and SAM-dependent" +BW25113_0083 ftsL 0 87519 87884 1 75 0.02185792349726776 366 8 "membrane bound cell division protein at septum containing leucine zipper motif" +BW25113_0083__5prime ftsL__5prime 0 87321 87518 1 272 0.07575757575757576 198 15 "membrane bound cell division protein at septum containing leucine zipper motif" +BW25113_0083__3prime ftsL__3prime 0 87885 88082 1 13 0.010101010101010102 198 2 "membrane bound cell division protein at septum containing leucine zipper motif" +BW25113_0084 ftsI 0 87900 89666 1 131 0.00792303338992643 1767 14 "transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3)" +BW25113_0084__5prime ftsI__5prime 0 87702 87899 1 34 0.025252525252525252 198 5 "transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3)" +BW25113_0084__3prime ftsI__3prime 0 89667 89864 1 0 0.0 198 0 "transpeptidase involved in septal peptidoglycan synthesis (penicillin-binding protein 3)" +BW25113_0085 murE 0 89653 91140 1 10 0.0006720430107526882 1488 1 "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase" +BW25113_0085__5prime murE__5prime 0 89455 89652 1 126 0.06565656565656566 198 13 "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase" +BW25113_0085__3prime murE__3prime 0 91141 91338 1 0 0.0 198 0 "UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-diaminopimelate ligase" +BW25113_0086 murF 0 91137 92495 1 41 0.004415011037527594 1359 6 "UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase" +BW25113_0086__5prime murF__5prime 0 90939 91136 1 10 0.005050505050505051 198 1 "UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase" +BW25113_0086__3prime murF__3prime 0 92496 92693 1 0 0.0 198 0 "UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase" +BW25113_0087 mraY 0 92489 93571 1 0 0.0 1083 0 "phospho-N-acetylmuramoyl-pentapeptide transferase" +BW25113_0087__5prime mraY__5prime 0 92291 92488 1 41 0.030303030303030304 198 6 "phospho-N-acetylmuramoyl-pentapeptide transferase" +BW25113_0087__3prime mraY__3prime 0 93572 93769 1 0 0.0 198 0 "phospho-N-acetylmuramoyl-pentapeptide transferase" +BW25113_0088 murD 0 93574 94890 1 69 0.006074411541381929 1317 8 "UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase" +BW25113_0088__5prime murD__5prime 0 93376 93573 1 0 0.0 198 0 "UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase" +BW25113_0088__3prime murD__3prime 0 94891 95088 1 118 0.045454545454545456 198 9 "UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase" +BW25113_0089 ftsW 0 94890 96134 1 175 0.012048192771084338 1245 15 "lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division" +BW25113_0089__5prime ftsW__5prime 0 94692 94889 1 27 0.015151515151515152 198 3 "lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division" +BW25113_0089__3prime ftsW__3prime 0 96135 96332 1 0 0.0 198 0 "lipid II flippase; integral membrane protein involved in stabilizing FstZ ring during cell division" +BW25113_0090 murG 0 96131 97198 1 44 0.003745318352059925 1068 4 "N-acetylglucosaminyl transferase" +BW25113_0090__5prime murG__5prime 0 95933 96130 1 57 0.030303030303030304 198 6 "N-acetylglucosaminyl transferase" +BW25113_0090__3prime murG__3prime 0 97199 97396 1 0 0.0 198 0 "N-acetylglucosaminyl transferase" +BW25113_0091 murC 0 97252 98727 1 91 0.006775067750677507 1476 10 "UDP-N-acetylmuramate:L-alanine ligase" +BW25113_0091__5prime murC__5prime 0 97054 97251 1 44 0.020202020202020204 198 4 "UDP-N-acetylmuramate:L-alanine ligase" +BW25113_0091__3prime murC__3prime 0 98728 98925 1 301 0.09595959595959595 198 19 "UDP-N-acetylmuramate:L-alanine ligase" +BW25113_0092 ddlB 0 98720 99640 1 1078 0.08903365906623235 921 82 "D-alanine:D-alanine ligase" +BW25113_0092__5prime ddlB__5prime 0 98522 98719 1 64 0.03535353535353535 198 7 "D-alanine:D-alanine ligase" +BW25113_0092__3prime ddlB__3prime 0 99641 99838 1 130 0.04040404040404041 198 8 "D-alanine:D-alanine ligase" +BW25113_0093 ftsQ 0 99642 100472 1 324 0.018050541516245487 831 15 "divisome assembly protein and membrane anchored protein involved in growth of wall at septum" +BW25113_0093__5prime ftsQ__5prime 0 99444 99641 1 246 0.12121212121212122 198 24 "divisome assembly protein and membrane anchored protein involved in growth of wall at septum" +BW25113_0093__3prime ftsQ__3prime 0 100473 100670 1 0 0.0 198 0 "divisome assembly protein and membrane anchored protein involved in growth of wall at septum" +BW25113_0094 ftsA 0 100469 101731 1 0 0.0 1263 0 "ATP-binding cell division protein involved in recruitment of FtsK to Z ring" +BW25113_0094__5prime ftsA__5prime 0 100271 100468 1 194 0.03535353535353535 198 7 "ATP-binding cell division protein involved in recruitment of FtsK to Z ring" +BW25113_0094__3prime ftsA__3prime 0 101732 101929 1 0 0.0 198 0 "ATP-binding cell division protein involved in recruitment of FtsK to Z ring" +BW25113_0094 ftsA 0 101020 101256 1 0 0.0 237 0 "101019_101256" +BW25113_0094__5prime ftsA__5prime 0 100822 101019 1 0 0.0 198 0 "101019_101256" +BW25113_0094__3prime ftsA__3prime 0 101257 101454 1 0 0.0 198 0 "101019_101256" +BW25113_0095 ftsZ 0 101792 102943 1 0 0.0 1152 0 "GTP-binding tubulin-like cell division protein" +BW25113_0095__5prime ftsZ__5prime 0 101594 101791 1 0 0.0 198 0 "GTP-binding tubulin-like cell division protein" +BW25113_0095__3prime ftsZ__3prime 0 102944 103141 1 331 0.04040404040404041 198 8 "GTP-binding tubulin-like cell division protein" +BW25113_0096 lpxC 0 103044 103961 1 20 0.0010893246187363835 918 1 "UDP-3-O-acyl N-acetylglucosamine deacetylase" +BW25113_0096__5prime lpxC__5prime 0 102846 103043 1 331 0.04040404040404041 198 8 "UDP-3-O-acyl N-acetylglucosamine deacetylase" +BW25113_0096__3prime lpxC__3prime 0 103962 104159 1 44 0.010101010101010102 198 2 "UDP-3-O-acyl N-acetylglucosamine deacetylase" +BW25113_0097 secM 0 104192 104704 1 487 0.07212475633528265 513 37 "regulator of secA translation" +BW25113_0097__5prime secM__5prime 0 103994 104191 1 67 0.025252525252525252 198 5 "regulator of secA translation" +BW25113_0097__3prime secM__3prime 0 104705 104902 1 0 0.0 198 0 "regulator of secA translation" +BW25113_0098 secA 0 104766 107471 1 357 0.009977827050997782 2706 27 "preprotein translocase subunit and ATPase" +BW25113_0098__5prime secA__5prime 0 104568 104765 1 135 0.07575757575757576 198 15 "preprotein translocase subunit and ATPase" +BW25113_0098__3prime secA__3prime 0 107472 107669 1 300 0.06060606060606061 198 12 "preprotein translocase subunit and ATPase" +BW25113_0099 mutT 0 107531 107920 1 1527 0.13076923076923078 390 51 "nucleoside triphosphate pyrophosphohydrolase and marked preference for dGTP" +BW25113_0099__5prime mutT__5prime 0 107333 107530 1 247 0.07575757575757576 198 15 "nucleoside triphosphate pyrophosphohydrolase and marked preference for dGTP" +BW25113_0099__3prime mutT__3prime 0 107921 108118 1 586 0.1111111111111111 198 22 "nucleoside triphosphate pyrophosphohydrolase and marked preference for dGTP" +107916_108116 107916_108116 0 107917 108116 1 593 0.11 200 22 "107916_108116" +107916_108116__5prime 107916_108116__5prime 0 107719 107916 1 1295 0.21212121212121213 198 42 "107916_108116" +107916_108116__3prime 107916_108116__3prime 0 108117 108314 1 225 0.0707070707070707 198 14 "107916_108116" +BW25113_0101 yacG 0 108136 108333 -1 201 0.05555555555555555 198 11 "DNA gyrase inhibitor" +BW25113_0101__5prime yacG__5prime 0 108334 108531 -1 222 0.08585858585858586 198 17 "DNA gyrase inhibitor" +BW25113_0101__3prime yacG__3prime 0 107938 108135 -1 546 0.10101010101010101 198 20 "DNA gyrase inhibitor" +BW25113_0102 zapD 0 108343 109086 -1 1726 0.11424731182795698 744 85 "FtsZ stabilizer" +BW25113_0102__5prime zapD__5prime 0 109087 109284 -1 39 0.010101010101010102 198 2 "FtsZ stabilizer" +BW25113_0102__3prime zapD__3prime 0 108145 108342 -1 186 0.045454545454545456 198 9 "FtsZ stabilizer" +BW25113_0103 coaE 0 109086 109706 -1 72 0.00644122383252818 621 4 "dephospho-CoA kinase" +BW25113_0103__5prime coaE__5prime 0 109707 109904 -1 518 0.07575757575757576 198 15 "dephospho-CoA kinase" +BW25113_0103__3prime coaE__3prime 0 108888 109085 -1 264 0.04040404040404041 198 8 "dephospho-CoA kinase" +BW25113_0104 guaC 0 109931 110974 1 3051 0.13122605363984674 1044 137 "GMP reductase" +BW25113_0104__5prime guaC__5prime 0 109733 109930 1 893 0.12626262626262627 198 25 "GMP reductase" +BW25113_0104__3prime guaC__3prime 0 110975 111172 1 714 0.09090909090909091 198 18 "GMP reductase" +BW25113_0106 hofC 0 111009 112211 -1 4058 0.13300083125519535 1203 160 "assembly protein in type IV pilin biogenesis and transmembrane protein" +BW25113_0106__5prime hofC__5prime 0 112212 112409 -1 234 0.09595959595959595 198 19 "assembly protein in type IV pilin biogenesis and transmembrane protein" +BW25113_0106__3prime hofC__3prime 0 110811 111008 -1 885 0.16161616161616163 198 32 "assembly protein in type IV pilin biogenesis and transmembrane protein" +BW25113_0107 hofB 0 112201 113586 -1 4086 0.12842712842712842 1386 178 "T2SE secretion family protein; P-loop ATPase superfamily protein" +BW25113_0107__5prime hofB__5prime 0 113587 113784 -1 319 0.11616161616161616 198 23 "T2SE secretion family protein; P-loop ATPase superfamily protein" +BW25113_0107__3prime hofB__3prime 0 112003 112200 -1 844 0.16161616161616163 198 32 "T2SE secretion family protein; P-loop ATPase superfamily protein" +BW25113_0108 ppdD 0 113596 114036 -1 1238 0.1360544217687075 441 60 "putative prepilin peptidase-dependent pilin" +BW25113_0108__5prime ppdD__5prime 0 114037 114234 -1 246 0.10101010101010101 198 20 "putative prepilin peptidase-dependent pilin" +BW25113_0108__3prime ppdD__3prime 0 113398 113595 -1 881 0.16161616161616163 198 32 "putative prepilin peptidase-dependent pilin" +BW25113_0109 nadC 0 114239 115132 -1 2979 0.1319910514541387 894 118 "quinolinate phosphoribosyltransferase" +BW25113_0109__5prime nadC__5prime 0 115133 115330 -1 1766 0.20707070707070707 198 41 "quinolinate phosphoribosyltransferase" +BW25113_0109__3prime nadC__3prime 0 114041 114238 -1 246 0.10101010101010101 198 20 "quinolinate phosphoribosyltransferase" +BW25113_0110 ampD 0 115220 115771 1 1959 0.13768115942028986 552 76 "1 and 6-anhydro-N-acetylmuramyl-L-alanine amidase and Zn-dependent; murein amidase" +BW25113_0110__5prime ampD__5prime 0 115022 115219 1 1621 0.18686868686868688 198 37 "1 and 6-anhydro-N-acetylmuramyl-L-alanine amidase and Zn-dependent; murein amidase" +BW25113_0110__3prime ampD__3prime 0 115772 115969 1 1000 0.19696969696969696 198 39 "1 and 6-anhydro-N-acetylmuramyl-L-alanine amidase and Zn-dependent; murein amidase" +BW25113_0111 ampE 0 115768 116622 1 2683 0.14736842105263157 855 126 "ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation" +BW25113_0111__5prime ampE__5prime 0 115570 115767 1 899 0.20707070707070707 198 41 "ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation" +BW25113_0111__3prime ampE__3prime 0 116623 116820 1 771 0.13131313131313133 198 26 "ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation" +BW25113_0112 aroP 0 116665 118038 -1 5550 0.15429403202328967 1374 212 "aromatic amino acid transporter" +BW25113_0112__5prime aroP__5prime 0 118039 118236 -1 90 0.03535353535353535 198 7 "aromatic amino acid transporter" +BW25113_0112__3prime aroP__3prime 0 116467 116664 -1 677 0.13636363636363635 198 27 "aromatic amino acid transporter" +BW25113_0113 pdhR 0 118579 119343 1 1225 0.09673202614379085 765 74 "pyruvate dehydrogenase complex repressor; autorepressor" +BW25113_0113__5prime pdhR__5prime 0 118381 118578 1 152 0.07575757575757576 198 15 "pyruvate dehydrogenase complex repressor; autorepressor" +BW25113_0113__3prime pdhR__3prime 0 119344 119541 1 205 0.0707070707070707 198 14 "pyruvate dehydrogenase complex repressor; autorepressor" +BW25113_0114 aceE 0 119504 122167 1 1861 0.046546546546546545 2664 124 "pyruvate dehydrogenase and decarboxylase component E1 and thiamine triphosphate-binding" +BW25113_0114__5prime aceE__5prime 0 119306 119503 1 220 0.08080808080808081 198 16 "pyruvate dehydrogenase and decarboxylase component E1 and thiamine triphosphate-binding" +BW25113_0114__3prime aceE__3prime 0 122168 122365 1 53 0.020202020202020204 198 4 "pyruvate dehydrogenase and decarboxylase component E1 and thiamine triphosphate-binding" +BW25113_0115 aceF 0 122182 124074 1 817 0.03116745905969361 1893 59 "pyruvate dehydrogenase and dihydrolipoyltransacetylase component E2" +BW25113_0115__5prime aceF__5prime 0 121984 122181 1 63 0.020202020202020204 198 4 "pyruvate dehydrogenase and dihydrolipoyltransacetylase component E2" +BW25113_0115__3prime aceF__3prime 0 124075 124272 1 80 0.04040404040404041 198 8 "pyruvate dehydrogenase and dihydrolipoyltransacetylase component E2" +BW25113_0116 lpd 0 124399 125823 1 49 0.004210526315789474 1425 6 "lipoamide dehydrogenase and E3 component is part of three enzyme complexes" +BW25113_0116__5prime lpd__5prime 0 124201 124398 1 238 0.09090909090909091 198 18 "lipoamide dehydrogenase and E3 component is part of three enzyme complexes" +BW25113_0116__3prime lpd__3prime 0 125824 126021 1 187 0.050505050505050504 198 10 "lipoamide dehydrogenase and E3 component is part of three enzyme complexes" +125833_125848 125833_125848 0 125834 125848 1 0 0.0 15 0 "125833_125848" +125833_125848__5prime 125833_125848__5prime 0 125636 125833 1 0 0.0 198 0 "125833_125848" +125833_125848__3prime 125833_125848__3prime 0 125849 126046 1 306 0.0707070707070707 198 14 "125833_125848" +BW25113_0117 yacH 0 125894 127747 -1 5280 0.13592233009708737 1854 252 "uncharacterized protein" +BW25113_0117__5prime yacH__5prime 0 127748 127945 -1 258 0.050505050505050504 198 10 "uncharacterized protein" +BW25113_0117__3prime yacH__3prime 0 125696 125893 -1 0 0.0 198 0 "uncharacterized protein" +BW25113_0118 acnB 0 128102 130699 1 1775 0.050423402617398 2598 131 "bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase" +BW25113_0118__5prime acnB__5prime 0 127904 128101 1 413 0.11616161616161616 198 23 "bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase" +BW25113_0118__3prime acnB__3prime 0 130700 130897 1 273 0.08080808080808081 198 16 "bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase" +BW25113_0119 yacL 0 130875 131237 1 1503 0.1322314049586777 363 48 "UPF0231 family protein" +BW25113_0119__5prime yacL__5prime 0 130677 130874 1 278 0.08080808080808081 198 16 "UPF0231 family protein" +BW25113_0119__3prime yacL__3prime 0 131238 131435 1 460 0.13636363636363635 198 27 "UPF0231 family protein" +BW25113_0120 speD 0 131275 132069 -1 1960 0.13333333333333333 795 106 "S-adenosylmethionine decarboxylase" +BW25113_0120__5prime speD__5prime 0 132070 132267 -1 716 0.12121212121212122 198 24 "S-adenosylmethionine decarboxylase" +BW25113_0120__3prime speD__3prime 0 131077 131274 -1 312 0.06060606060606061 198 12 "S-adenosylmethionine decarboxylase" +BW25113_0121 speE 0 132085 132951 -1 3133 0.1061130334486736 867 92 "spermidine synthase (putrescine aminopropyltransferase)" +BW25113_0121__5prime speE__5prime 0 132952 133149 -1 244 0.08080808080808081 198 16 "spermidine synthase (putrescine aminopropyltransferase)" +BW25113_0121__3prime speE__3prime 0 131887 132084 -1 424 0.12121212121212122 198 24 "spermidine synthase (putrescine aminopropyltransferase)" +BW25113_0122 yacC 0 133057 133404 -1 674 0.08045977011494253 348 28 "PulS_OutS family protein" +BW25113_0122__5prime yacC__5prime 0 133405 133602 -1 308 0.09595959595959595 198 19 "PulS_OutS family protein" +BW25113_0122__3prime yacC__3prime 0 132859 133056 -1 390 0.09595959595959595 198 19 "PulS_OutS family protein" +BW25113_0123 cueO 0 133570 135120 1 4580 0.12959381044487428 1551 201 "multicopper oxidase (laccase)" +BW25113_0123__5prime cueO__5prime 0 133372 133569 1 406 0.13636363636363635 198 27 "multicopper oxidase (laccase)" +BW25113_0123__3prime cueO__3prime 0 135121 135318 1 378 0.11616161616161616 198 23 "multicopper oxidase (laccase)" +135185_135283 135185_135283 0 135186 135283 1 183 0.11224489795918367 98 11 "135185_135283" +135185_135283__5prime 135185_135283__5prime 0 134988 135185 1 802 0.14646464646464646 198 29 "135185_135283" +135185_135283__3prime 135185_135283__3prime 0 135284 135481 1 1165 0.19696969696969696 198 39 "135185_135283" +BW25113_0124 gcd 0 135322 137712 -1 8605 0.1409452112086993 2391 337 "glucose dehydrogenase" +BW25113_0124__5prime gcd__5prime 0 137713 137910 -1 94 0.045454545454545456 198 9 "glucose dehydrogenase" +BW25113_0124__3prime gcd__3prime 0 135124 135321 -1 378 0.11616161616161616 198 23 "glucose dehydrogenase" +BW25113_0125 hpt 0 137918 138454 1 1434 0.12849162011173185 537 69 "hypoxanthine phosphoribosyltransferase" +BW25113_0125__5prime hpt__5prime 0 137720 137917 1 94 0.045454545454545456 198 9 "hypoxanthine phosphoribosyltransferase" +BW25113_0125__3prime hpt__3prime 0 138455 138652 1 456 0.08080808080808081 198 16 "hypoxanthine phosphoribosyltransferase" +138464_138485 138464_138485 0 138465 138485 1 101 0.3333333333333333 21 7 "138464_138485" +138464_138485__5prime 138464_138485__5prime 0 138267 138464 1 590 0.12626262626262627 198 25 "138464_138485" +138464_138485__3prime 138464_138485__3prime 0 138486 138683 1 141 0.015151515151515152 198 3 "138464_138485" +BW25113_0126 can 0 138495 139157 -1 152 0.006033182503770739 663 4 "carbonic anhydrase" +BW25113_0126__5prime can__5prime 0 139158 139355 -1 569 0.12626262626262627 198 25 "carbonic anhydrase" +BW25113_0126__3prime can__3prime 0 138297 138494 -1 683 0.15656565656565657 198 31 "carbonic anhydrase" +BW25113_0127 yadG 0 139266 140192 1 2615 0.11758360302049622 927 109 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_0127__5prime yadG__5prime 0 139068 139265 1 373 0.08585858585858586 198 17 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_0127__3prime yadG__3prime 0 140193 140390 1 411 0.15656565656565657 198 31 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_0128 yadH 0 140189 140959 1 1954 0.1569390402075227 771 121 "inner membrane putative ABC superfamily transporter permease" +BW25113_0128__5prime yadH__5prime 0 139991 140188 1 808 0.13131313131313133 198 26 "inner membrane putative ABC superfamily transporter permease" +BW25113_0128__3prime yadH__3prime 0 140960 141157 1 927 0.16161616161616163 198 32 "inner membrane putative ABC superfamily transporter permease" +BW25113_0129 yadI 0 141064 141504 1 1729 0.16099773242630386 441 71 "putative PTS Enzyme IIA" +BW25113_0129__5prime yadI__5prime 0 140866 141063 1 1112 0.22727272727272727 198 45 "putative PTS Enzyme IIA" +BW25113_0129__3prime yadI__3prime 0 141505 141702 1 367 0.08585858585858586 198 17 "putative PTS Enzyme IIA" +BW25113_0130 yadE 0 141568 142797 1 3412 0.1040650406504065 1230 128 "putative polysaccharide deacetylase lipoprotein" +BW25113_0130__5prime yadE__5prime 0 141370 141567 1 601 0.13636363636363635 198 27 "putative polysaccharide deacetylase lipoprotein" +BW25113_0130__3prime yadE__3prime 0 142798 142995 1 117 0.045454545454545456 198 9 "putative polysaccharide deacetylase lipoprotein" +BW25113_0131 panD 0 142801 143181 -1 626 0.08136482939632546 381 31 "aspartate 1-decarboxylase" +BW25113_0131__5prime panD__5prime 0 143182 143379 -1 531 0.15151515151515152 198 30 "aspartate 1-decarboxylase" +BW25113_0131__3prime panD__3prime 0 142603 142800 -1 132 0.03535353535353535 198 7 "aspartate 1-decarboxylase" +BW25113_0132 yadD 0 143455 144357 1 3366 0.13732004429678848 903 124 "transposase_31 family protein" +BW25113_0132__5prime yadD__5prime 0 143257 143454 1 344 0.12626262626262627 198 25 "transposase_31 family protein" +BW25113_0132__3prime yadD__3prime 0 144358 144555 1 550 0.11616161616161616 198 23 "transposase_31 family protein" +BW25113_0133 panC 0 144431 145282 -1 2075 0.11150234741784038 852 95 "pantothenate synthetase" +BW25113_0133__5prime panC__5prime 0 145283 145480 -1 631 0.13131313131313133 198 26 "pantothenate synthetase" +BW25113_0133__3prime panC__3prime 0 144233 144430 -1 634 0.12121212121212122 198 24 "pantothenate synthetase" +BW25113_0134 panB 0 145294 146088 -1 1666 0.09433962264150944 795 75 "3-methyl-2-oxobutanoate hydroxymethyltransferase" +BW25113_0134__5prime panB__5prime 0 146089 146286 -1 2339 0.35858585858585856 198 71 "3-methyl-2-oxobutanoate hydroxymethyltransferase" +BW25113_0134__3prime panB__3prime 0 145096 145293 -1 811 0.12121212121212122 198 24 "3-methyl-2-oxobutanoate hydroxymethyltransferase" +BW25113_0135 yadC 0 146202 147440 -1 25468 0.4406779661016949 1239 546 "putative fimbrial-like adhesin protein" +BW25113_0135__5prime yadC__5prime 0 147441 147638 -1 1804 0.3282828282828283 198 65 "putative fimbrial-like adhesin protein" +BW25113_0135__3prime yadC__3prime 0 146004 146201 -1 1536 0.2676767676767677 198 53 "putative fimbrial-like adhesin protein" +BW25113_0136 yadK 0 147490 148086 -1 10996 0.3936348408710218 597 235 "putative fimbrial-like adhesin protein" +BW25113_0136__5prime yadK__5prime 0 148087 148284 -1 9760 0.5606060606060606 198 111 "putative fimbrial-like adhesin protein" +BW25113_0136__3prime yadK__3prime 0 147292 147489 -1 2753 0.3787878787878788 198 75 "putative fimbrial-like adhesin protein" +BW25113_0137 yadL 0 148113 148718 -1 25548 0.5198019801980198 606 315 "putative fimbrial-like adhesin protein" +BW25113_0137__5prime yadL__5prime 0 148719 148916 -1 3833 0.4797979797979798 198 95 "putative fimbrial-like adhesin protein" +BW25113_0137__3prime yadL__3prime 0 147915 148112 -1 3366 0.3888888888888889 198 77 "putative fimbrial-like adhesin protein" +BW25113_0138 yadM 0 148730 149299 -1 15649 0.45087719298245615 570 257 "putative fimbrial-like adhesin protein" +BW25113_0138__5prime yadM__5prime 0 149300 149497 -1 6955 0.3181818181818182 198 63 "putative fimbrial-like adhesin protein" +BW25113_0138__3prime yadM__3prime 0 148532 148729 -1 8692 0.4797979797979798 198 95 "putative fimbrial-like adhesin protein" +BW25113_0139 htrE 0 149316 151913 -1 65184 0.44611239414934567 2598 1159 "putative outer membrane usher protein" +BW25113_0139__5prime htrE__5prime 0 151914 152111 -1 2163 0.3181818181818182 198 63 "putative outer membrane usher protein" +BW25113_0139__3prime htrE__3prime 0 149118 149315 -1 4243 0.3434343434343434 198 68 "putative outer membrane usher protein" +BW25113_0140 yadV 0 151948 152688 -1 11340 0.4183535762483131 741 310 "putative periplasmic pilin chaperone" +BW25113_0140__5prime yadV__5prime 0 152689 152886 -1 2081 0.2474747474747475 198 49 "putative periplasmic pilin chaperone" +BW25113_0140__3prime yadV__3prime 0 151750 151947 -1 3906 0.46464646464646464 198 92 "putative periplasmic pilin chaperone" +BW25113_0141 yadN 0 152786 153370 -1 10856 0.4752136752136752 585 278 "putative fimbrial-like adhesin protein" +BW25113_0141__5prime yadN__5prime 0 153371 153568 -1 409 0.12121212121212122 198 24 "putative fimbrial-like adhesin protein" +BW25113_0141__3prime yadN__3prime 0 152588 152785 -1 1480 0.23737373737373738 198 47 "putative fimbrial-like adhesin protein" +BW25113_0142 folK 0 153740 154219 -1 449 0.04791666666666667 480 23 "2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase" +BW25113_0142__5prime folK__5prime 0 154220 154417 -1 363 0.09090909090909091 198 18 "2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase" +BW25113_0142__3prime folK__3prime 0 153542 153739 -1 108 0.05555555555555555 198 11 "2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase" +BW25113_0143 pcnB 0 154216 155613 -1 2316 0.0765379113018598 1398 107 "poly(A) polymerase" +BW25113_0143__5prime pcnB__5prime 0 155614 155811 -1 128 0.025252525252525252 198 5 "poly(A) polymerase" +BW25113_0143__3prime pcnB__3prime 0 154018 154215 -1 141 0.025252525252525252 198 5 "poly(A) polymerase" +BW25113_0144 gluQ 0 155673 156599 -1 1890 0.11434735706580366 927 106 "glutamyl-Q tRNA(Asp) synthetase" +BW25113_0144__5prime gluQ__5prime 0 156600 156797 -1 357 0.12121212121212122 198 24 "glutamyl-Q tRNA(Asp) synthetase" +BW25113_0144__3prime gluQ__3prime 0 155475 155672 -1 356 0.10606060606060606 198 21 "glutamyl-Q tRNA(Asp) synthetase" +BW25113_0145 dksA 0 156636 157091 -1 806 0.08333333333333333 456 38 "transcriptional regulator of rRNA transcription and DnaK suppressor protein" +BW25113_0145__5prime dksA__5prime 0 157092 157289 -1 532 0.12626262626262627 198 25 "transcriptional regulator of rRNA transcription and DnaK suppressor protein" +BW25113_0145__3prime dksA__3prime 0 156438 156635 -1 438 0.1414141414141414 198 28 "transcriptional regulator of rRNA transcription and DnaK suppressor protein" +BW25113_0146 sfsA 0 157269 157973 -1 2592 0.150354609929078 705 106 "sugar fermentation stimulation protein A" +BW25113_0146__5prime sfsA__5prime 0 157974 158171 -1 615 0.19696969696969696 198 39 "sugar fermentation stimulation protein A" +BW25113_0146__3prime sfsA__3prime 0 157071 157268 -1 529 0.11616161616161616 198 23 "sugar fermentation stimulation protein A" +BW25113_0147 ligT 0 157988 158518 -1 1753 0.1393596986817326 531 74 '"2''-5'' RNA ligase"' +BW25113_0147__5prime ligT__5prime 0 158519 158716 -1 626 0.09595959595959595 198 19 '"2''-5'' RNA ligase"' +BW25113_0147__3prime ligT__3prime 0 157790 157987 -1 994 0.17676767676767677 198 35 '"2''-5'' RNA ligase"' +BW25113_0148 hrpB 0 158592 161021 1 8797 0.12551440329218108 2430 305 "putative ATP-dependent helicase" +BW25113_0148__5prime hrpB__5prime 0 158394 158591 1 671 0.1111111111111111 198 22 "putative ATP-dependent helicase" +BW25113_0148__3prime hrpB__3prime 0 161022 161219 1 929 0.1717171717171717 198 34 "putative ATP-dependent helicase" +BW25113_0149 mrcB 0 161217 163751 1 6256 0.11794871794871795 2535 299 "fused glycosyl transferase and transpeptidase" +BW25113_0149__5prime mrcB__5prime 0 161019 161216 1 929 0.1717171717171717 198 34 "fused glycosyl transferase and transpeptidase" +BW25113_0149__3prime mrcB__3prime 0 163752 163949 1 79 0.030303030303030304 198 6 "fused glycosyl transferase and transpeptidase" +163767_163792 163767_163792 0 163768 163792 1 0 0.0 25 0 "163767_163792" +163767_163792__5prime 163767_163792__5prime 0 163570 163767 1 858 0.22727272727272727 198 45 "163767_163792" +163767_163792__3prime 163767_163792__3prime 0 163793 163990 1 193 0.050505050505050504 198 10 "163767_163792" +BW25113_0150 fhuA 0 163971 166214 1 7880 0.1394830659536542 2244 313 "ferrichrome outer membrane transporter" +BW25113_0150__5prime fhuA__5prime 0 163773 163970 1 78 0.030303030303030304 198 6 "ferrichrome outer membrane transporter" +BW25113_0150__3prime fhuA__3prime 0 166215 166412 1 658 0.08080808080808081 198 16 "ferrichrome outer membrane transporter" +BW25113_0151 fhuC 0 166265 167062 1 3419 0.12280701754385964 798 98 "iron-hydroxamate transporter subunit" +BW25113_0151__5prime fhuC__5prime 0 166067 166264 1 524 0.08585858585858586 198 17 "iron-hydroxamate transporter subunit" +BW25113_0151__3prime fhuC__3prime 0 167063 167260 1 296 0.1111111111111111 198 22 "iron-hydroxamate transporter subunit" +BW25113_0152 fhuD 0 167062 167952 1 2140 0.11447811447811448 891 102 "iron-hydroxamate transporter subunit" +BW25113_0152__5prime fhuD__5prime 0 166864 167061 1 886 0.12121212121212122 198 24 "iron-hydroxamate transporter subunit" +BW25113_0152__3prime fhuD__3prime 0 167953 168150 1 375 0.08585858585858586 198 17 "iron-hydroxamate transporter subunit" +BW25113_0153 fhuB 0 167949 169931 1 5376 0.11144730206757439 1983 221 "fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components" +BW25113_0153__5prime fhuB__5prime 0 167751 167948 1 640 0.12121212121212122 198 24 "fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components" +BW25113_0153__3prime fhuB__3prime 0 169932 170129 1 354 0.09595959595959595 198 19 "fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components" +169990_170075 169990_170075 0 169991 170075 1 129 0.10588235294117647 85 9 "169990_170075" +169990_170075__5prime 169990_170075__5prime 0 169793 169990 1 685 0.13636363636363635 198 27 "169990_170075" +169990_170075__3prime 169990_170075__3prime 0 170076 170273 1 0 0.0 198 0 "169990_170075" +BW25113_0154 hemL 0 170089 171369 -1 57 0.00468384074941452 1281 6 "glutamate-1-semialdehyde aminotransferase (aminomutase)" +BW25113_0154__5prime hemL__5prime 0 171370 171567 -1 242 0.06565656565656566 198 13 "glutamate-1-semialdehyde aminotransferase (aminomutase)" +BW25113_0154__3prime hemL__3prime 0 169891 170088 -1 354 0.09595959595959595 198 19 "glutamate-1-semialdehyde aminotransferase (aminomutase)" +BW25113_0155 clcA 0 171594 173015 1 4026 0.12236286919831224 1422 174 "H(+)/Cl(-) exchange transporter" +BW25113_0155__5prime clcA__5prime 0 171396 171593 1 230 0.06060606060606061 198 12 "H(+)/Cl(-) exchange transporter" +BW25113_0155__3prime clcA__3prime 0 173016 173213 1 44 0.015151515151515152 198 3 "H(+)/Cl(-) exchange transporter" +BW25113_0156 erpA 0 173097 173441 1 71 0.011594202898550725 345 4 "iron-sulfur cluster insertion protein" +BW25113_0156__5prime erpA__5prime 0 172899 173096 1 509 0.08585858585858586 198 17 "iron-sulfur cluster insertion protein" +BW25113_0156__3prime erpA__3prime 0 173442 173639 1 492 0.0707070707070707 198 14 "iron-sulfur cluster insertion protein" +173455_173474 173455_173474 0 173456 173474 1 9 0.05263157894736842 19 1 "173455_173474" +173455_173474__5prime 173455_173474__5prime 0 173258 173455 1 100 0.025252525252525252 198 5 "173455_173474" +173455_173474__3prime 173455_173474__3prime 0 173475 173672 1 462 0.06565656565656566 198 13 "173455_173474" +BW25113_0157 yadS 0 173488 174111 -1 900 0.09294871794871795 624 58 "UPF0126 family inner membrane protein" +BW25113_0157__5prime yadS__5prime 0 174112 174309 -1 748 0.13636363636363635 198 27 "UPF0126 family inner membrane protein" +BW25113_0157__3prime yadS__3prime 0 173290 173487 -1 328 0.06060606060606061 198 12 "UPF0126 family inner membrane protein" +BW25113_0158 btuF 0 174149 174949 -1 1355 0.07865168539325842 801 63 "vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_0158__5prime btuF__5prime 0 174950 175147 -1 16 0.005050505050505051 198 1 "vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_0158__3prime btuF__3prime 0 173951 174148 -1 317 0.1111111111111111 198 22 "vitamin B12 transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_0159 mtn 0 174942 175640 -1 23 0.002861230329041488 699 2 '"5''-methylthioadenosine/S-adenosylhomocysteine nucleosidase"' +BW25113_0159__5prime mtn__5prime 0 175641 175838 -1 267 0.08080808080808081 198 16 '"5''-methylthioadenosine/S-adenosylhomocysteine nucleosidase"' +BW25113_0159__3prime mtn__3prime 0 174744 174941 -1 279 0.08080808080808081 198 16 '"5''-methylthioadenosine/S-adenosylhomocysteine nucleosidase"' +BW25113_0160 dgt 0 175724 177241 1 22203 0.3326745718050066 1518 505 "deoxyguanosine triphosphate triphosphohydrolase" +BW25113_0160__5prime dgt__5prime 0 175526 175723 1 181 0.050505050505050504 198 10 "deoxyguanosine triphosphate triphosphohydrolase" +BW25113_0160__3prime dgt__3prime 0 177242 177439 1 3279 0.4090909090909091 198 81 "deoxyguanosine triphosphate triphosphohydrolase" +BW25113_0161 degP 0 177371 178795 1 7681 0.1824561403508772 1425 260 "serine endoprotease (protease Do) and membrane-associated" +BW25113_0161__5prime degP__5prime 0 177173 177370 1 2292 0.4090909090909091 198 81 "serine endoprotease (protease Do) and membrane-associated" +BW25113_0161__3prime degP__3prime 0 178796 178993 1 1076 0.20202020202020202 198 40 "serine endoprotease (protease Do) and membrane-associated" +BW25113_0162 cdaR 0 178950 180107 1 3230 0.11917098445595854 1158 138 "carbohydrate diacid regulon transcriptional regulator; autoregulator" +BW25113_0162__5prime cdaR__5prime 0 178752 178949 1 1141 0.21717171717171718 198 43 "carbohydrate diacid regulon transcriptional regulator; autoregulator" +BW25113_0162__3prime cdaR__3prime 0 180108 180305 1 620 0.15151515151515152 198 30 "carbohydrate diacid regulon transcriptional regulator; autoregulator" +BW25113_0163 yaeH 0 180196 180582 -1 648 0.08010335917312661 387 31 "UPF0325 family protein" +BW25113_0163__5prime yaeH__5prime 0 180583 180780 -1 230 0.07575757575757576 198 15 "UPF0325 family protein" +BW25113_0163__3prime yaeH__3prime 0 179998 180195 -1 471 0.1414141414141414 198 28 "UPF0325 family protein" +BW25113_0164 yaeI 0 180744 181556 -1 3130 0.14268142681426815 813 116 "phosphodiesterase with model substrate bis-pNPP" +BW25113_0164__5prime yaeI__5prime 0 181557 181754 -1 609 0.11616161616161616 198 23 "phosphodiesterase with model substrate bis-pNPP" +BW25113_0164__3prime yaeI__3prime 0 180546 180743 -1 377 0.10101010101010101 198 20 "phosphodiesterase with model substrate bis-pNPP" +BW25113_0166 dapD 0 181610 182434 -1 318 0.01575757575757576 825 13 "2 and 3 and 4 and 5-tetrahydropyridine-2-carboxylate N-succinyltransferase" +BW25113_0166__5prime dapD__5prime 0 182435 182632 -1 213 0.04040404040404041 198 8 "2 and 3 and 4 and 5-tetrahydropyridine-2-carboxylate N-succinyltransferase" +BW25113_0166__3prime dapD__3prime 0 181412 181609 -1 1120 0.21717171717171718 198 43 "2 and 3 and 4 and 5-tetrahydropyridine-2-carboxylate N-succinyltransferase" +BW25113_0167 glnD 0 182465 185137 -1 1839 0.03890759446315002 2673 104 "uridylyltransferase" +BW25113_0167__5prime glnD__5prime 0 185138 185335 -1 305 0.03535353535353535 198 7 "uridylyltransferase" +BW25113_0167__3prime glnD__3prime 0 182267 182464 -1 117 0.025252525252525252 198 5 "uridylyltransferase" +BW25113_0168 map 0 185199 185993 -1 106 0.006289308176100629 795 5 "methionine aminopeptidase" +BW25113_0168__5prime map__5prime 0 185994 186191 -1 520 0.14646464646464646 198 29 "methionine aminopeptidase" +BW25113_0168__3prime map__3prime 0 185001 185198 -1 475 0.0707070707070707 198 14 "methionine aminopeptidase" +BW25113_4414 tff 0 186199 186334 1 0 0.0 136 0 "novel sRNA and function unknown" +BW25113_4414__5prime tff__5prime 0 186001 186198 1 520 0.14646464646464646 198 29 "novel sRNA and function unknown" +BW25113_4414__3prime tff__3prime 0 186335 186532 1 0 0.0 198 0 "novel sRNA and function unknown" +BW25113_0169 rpsB 0 186361 187086 1 0 0.0 726 0 "30S ribosomal subunit protein S2" +BW25113_0169__5prime rpsB__5prime 0 186163 186360 1 0 0.0 198 0 "30S ribosomal subunit protein S2" +BW25113_0169__3prime rpsB__3prime 0 187087 187284 1 29 0.015151515151515152 198 3 "30S ribosomal subunit protein S2" +BW25113_0170 tsf 0 187344 188195 1 12 0.002347417840375587 852 2 "translation elongation factor EF-Ts" +BW25113_0170__5prime tsf__5prime 0 187146 187343 1 29 0.015151515151515152 198 3 "translation elongation factor EF-Ts" +BW25113_0170__3prime tsf__3prime 0 188196 188393 1 396 0.08585858585858586 198 17 "translation elongation factor EF-Ts" +BW25113_0171 pyrH 0 188342 189067 1 0 0.0 726 0 "uridylate kinase" +BW25113_0171__5prime pyrH__5prime 0 188144 188341 1 408 0.09595959595959595 198 19 "uridylate kinase" +BW25113_0171__3prime pyrH__3prime 0 189068 189265 1 513 0.1414141414141414 198 28 "uridylate kinase" +BW25113_0172 frr 0 189359 189916 1 41 0.007168458781362007 558 4 "ribosome recycling factor" +BW25113_0172__5prime frr__5prime 0 189161 189358 1 1290 0.19696969696969696 198 39 "ribosome recycling factor" +BW25113_0172__3prime frr__3prime 0 189917 190114 1 52 0.03535353535353535 198 7 "ribosome recycling factor" +BW25113_0173 dxr 0 190008 191204 1 81 0.005847953216374269 1197 7 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" +BW25113_0173__5prime dxr__5prime 0 189810 190007 1 93 0.05555555555555555 198 11 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" +BW25113_0173__3prime dxr__3prime 0 191205 191402 1 712 0.20202020202020202 198 40 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" +BW25113_0174 ispU 0 191390 192151 1 137 0.007874015748031496 762 6 "undecaprenyl pyrophosphate synthase" +BW25113_0174__5prime ispU__5prime 0 191192 191389 1 772 0.2222222222222222 198 44 "undecaprenyl pyrophosphate synthase" +BW25113_0174__3prime ispU__3prime 0 192152 192349 1 0 0.0 198 0 "undecaprenyl pyrophosphate synthase" +BW25113_0175 cdsA 0 192164 193021 1 123 0.008158508158508158 858 7 "CDP-diglyceride synthase" +BW25113_0175__5prime cdsA__5prime 0 191966 192163 1 126 0.020202020202020204 198 4 "CDP-diglyceride synthase" +BW25113_0175__3prime cdsA__3prime 0 193022 193219 1 117 0.020202020202020204 198 4 "CDP-diglyceride synthase" +BW25113_0176 rseP 0 193033 194385 1 62 0.0014781966001478197 1353 2 "inner membrane zinc RIP metalloprotease; RpoE activator and by degrading RseA; cleaved signal peptide endoprotease" +BW25113_0176__5prime rseP__5prime 0 192835 193032 1 183 0.050505050505050504 198 10 "inner membrane zinc RIP metalloprotease; RpoE activator and by degrading RseA; cleaved signal peptide endoprotease" +BW25113_0176__3prime rseP__3prime 0 194386 194583 1 0 0.0 198 0 "inner membrane zinc RIP metalloprotease; RpoE activator and by degrading RseA; cleaved signal peptide endoprotease" +BW25113_0177 bamA 0 194415 196847 1 50 0.002466091245376079 2433 6 "BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor" +BW25113_0177__5prime bamA__5prime 0 194217 194414 1 5 0.005050505050505051 198 1 "BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor" +BW25113_0177__3prime bamA__3prime 0 196848 197045 1 885 0.20707070707070707 198 41 "BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor" +BW25113_0178 skp 0 196969 197454 1 616 0.08024691358024691 486 39 "periplasmic chaperone" +BW25113_0178__5prime skp__5prime 0 196771 196968 1 746 0.17676767676767677 198 35 "periplasmic chaperone" +BW25113_0178__3prime skp__3prime 0 197455 197652 1 0 0.0 198 0 "periplasmic chaperone" +BW25113_0179 lpxD 0 197458 198483 1 299 0.007797270955165692 1026 8 "UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase" +BW25113_0179__5prime lpxD__5prime 0 197260 197457 1 158 0.050505050505050504 198 10 "UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase" +BW25113_0179__3prime lpxD__3prime 0 198484 198681 1 91 0.030303030303030304 198 6 "UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase" +BW25113_0180 fabZ 0 198588 199043 1 27 0.006578947368421052 456 3 "(3R)-hydroxymyristol acyl carrier protein dehydratase" +BW25113_0180__5prime fabZ__5prime 0 198390 198587 1 390 0.0707070707070707 198 14 "(3R)-hydroxymyristol acyl carrier protein dehydratase" +BW25113_0180__3prime fabZ__3prime 0 199044 199241 1 0 0.0 198 0 "(3R)-hydroxymyristol acyl carrier protein dehydratase" +BW25113_0181 lpxA 0 199047 199835 1 0 0.0 789 0 "UDP-N-acetylglucosamine acetyltransferase" +BW25113_0181__5prime lpxA__5prime 0 198849 199046 1 27 0.015151515151515152 198 3 "UDP-N-acetylglucosamine acetyltransferase" +BW25113_0181__3prime lpxA__3prime 0 199836 200033 1 113 0.020202020202020204 198 4 "UDP-N-acetylglucosamine acetyltransferase" +BW25113_0182 lpxB 0 199835 200983 1 191 0.009573542210617928 1149 11 "tetraacyldisaccharide-1-P synthase" +BW25113_0182__5prime lpxB__5prime 0 199637 199834 1 0 0.0 198 0 "tetraacyldisaccharide-1-P synthase" +BW25113_0182__3prime lpxB__3prime 0 200984 201181 1 11 0.005050505050505051 198 1 "tetraacyldisaccharide-1-P synthase" +BW25113_0183 rnhB 0 200980 201576 1 903 0.05695142378559464 597 34 "ribonuclease HII and degrades RNA of DNA-RNA hybrids" +BW25113_0183__5prime rnhB__5prime 0 200782 200979 1 78 0.03535353535353535 198 7 "ribonuclease HII and degrades RNA of DNA-RNA hybrids" +BW25113_0183__3prime rnhB__3prime 0 201577 201774 1 124 0.03535353535353535 198 7 "ribonuclease HII and degrades RNA of DNA-RNA hybrids" +BW25113_0184 dnaE 0 201613 205095 1 23 0.0011484352569623888 3483 4 "DNA polymerase III alpha subunit" +BW25113_0184__5prime dnaE__5prime 0 201415 201612 1 852 0.13131313131313133 198 26 "DNA polymerase III alpha subunit" +BW25113_0184__3prime dnaE__3prime 0 205096 205293 1 0 0.0 198 0 "DNA polymerase III alpha subunit" +BW25113_0185 accA 0 205108 206067 1 0 0.0 960 0 "acetyl-CoA carboxylase and carboxytransferase and alpha subunit" +BW25113_0185__5prime accA__5prime 0 204910 205107 1 11 0.010101010101010102 198 2 "acetyl-CoA carboxylase and carboxytransferase and alpha subunit" +BW25113_0185__3prime accA__3prime 0 206068 206265 1 499 0.1414141414141414 198 28 "acetyl-CoA carboxylase and carboxytransferase and alpha subunit" +BW25113_0186 ldcC 0 206166 208307 1 5286 0.11017740429505135 2142 236 "lysine decarboxylase 2 and constitutive" +BW25113_0186__5prime ldcC__5prime 0 205968 206165 1 445 0.12626262626262627 198 25 "lysine decarboxylase 2 and constitutive" +BW25113_0186__3prime ldcC__3prime 0 208308 208505 1 275 0.06565656565656566 198 13 "lysine decarboxylase 2 and constitutive" +BW25113_0187 yaeR 0 208364 208753 1 660 0.07948717948717948 390 31 "putative lyase" +BW25113_0187__5prime yaeR__5prime 0 208166 208363 1 501 0.10606060606060606 198 21 "putative lyase" +BW25113_0187__3prime yaeR__3prime 0 208754 208951 1 207 0.030303030303030304 198 6 "putative lyase" +BW25113_0188 tilS 0 208818 210116 1 218 0.006158583525789068 1299 8 "tRNA(Ile)-lysidine synthetase" +BW25113_0188__5prime tilS__5prime 0 208620 208817 1 487 0.06565656565656566 198 13 "tRNA(Ile)-lysidine synthetase" +BW25113_0188__3prime tilS__3prime 0 210117 210314 1 255 0.06565656565656566 198 13 "tRNA(Ile)-lysidine synthetase" +210118_210155 210118_210155 0 210119 210155 1 0 0.0 37 0 "210118_210155" +210118_210155__5prime 210118_210155__5prime 0 209921 210118 1 155 0.020202020202020204 198 4 "210118_210155" +210118_210155__3prime 210118_210155__3prime 0 210156 210353 1 440 0.09090909090909091 198 18 "210118_210155" +BW25113_0189 rof 0 210165 210419 -1 440 0.07058823529411765 255 18 "modulator of Rho-dependent transcription termination" +BW25113_0189__5prime rof__5prime 0 210420 210617 -1 301 0.08585858585858586 198 17 "modulator of Rho-dependent transcription termination" +BW25113_0189__3prime rof__3prime 0 209967 210164 -1 155 0.020202020202020204 198 4 "modulator of Rho-dependent transcription termination" +BW25113_4406 yaeP 0 210412 210612 -1 301 0.0845771144278607 201 17 "UPF0253 family protein" +BW25113_4406__5prime yaeP__5prime 0 210613 210810 -1 672 0.16161616161616163 198 32 "UPF0253 family protein" +BW25113_4406__3prime yaeP__3prime 0 210214 210411 -1 282 0.06060606060606061 198 12 "UPF0253 family protein" +BW25113_0190 yaeQ 0 210778 211323 1 960 0.06227106227106227 546 34 "PDDEXK superfamily protein" +BW25113_0190__5prime yaeQ__5prime 0 210580 210777 1 695 0.16666666666666666 198 33 "PDDEXK superfamily protein" +BW25113_0190__3prime yaeQ__3prime 0 211324 211521 1 157 0.06565656565656566 198 13 "PDDEXK superfamily protein" +BW25113_0191 arfB 0 211320 211742 1 1073 0.10874704491725769 423 46 "alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase and ribosome-attached" +BW25113_0191__5prime arfB__5prime 0 211122 211319 1 232 0.050505050505050504 198 10 "alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase and ribosome-attached" +BW25113_0191__3prime arfB__3prime 0 211743 211940 1 256 0.07575757575757576 198 15 "alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase and ribosome-attached" +BW25113_0192 nlpE 0 211756 212466 1 2474 0.14064697609001406 711 100 "lipoprotein involved with copper homeostasis and adhesion" +BW25113_0192__5prime nlpE__5prime 0 211558 211755 1 796 0.12121212121212122 198 24 "lipoprotein involved with copper homeostasis and adhesion" +BW25113_0192__3prime nlpE__3prime 0 212467 212664 1 626 0.15656565656565657 198 31 "lipoprotein involved with copper homeostasis and adhesion" +212513_212624 212513_212624 0 212514 212624 1 387 0.16216216216216217 111 18 "212513_212624" +212513_212624__5prime 212513_212624__5prime 0 212316 212513 1 511 0.13636363636363635 198 27 "212513_212624" +212513_212624__3prime 212513_212624__3prime 0 212625 212822 1 1508 0.22727272727272727 198 45 "212513_212624" +BW25113_0193 yaeF 0 212666 213490 -1 3349 0.14181818181818182 825 117 "putative lipoprotein" +BW25113_0193__5prime yaeF__5prime 0 213491 213688 -1 120 0.025252525252525252 198 5 "putative lipoprotein" +BW25113_0193__3prime yaeF__3prime 0 212468 212665 -1 626 0.15656565656565657 198 31 "putative lipoprotein" +BW25113_0194 proS 0 213544 215262 -1 74 0.002326934264107039 1719 4 "prolyl-tRNA synthetase" +BW25113_0194__5prime proS__5prime 0 215263 215460 -1 278 0.08585858585858586 198 17 "prolyl-tRNA synthetase" +BW25113_0194__3prime proS__3prime 0 213346 213543 -1 408 0.08080808080808081 198 16 "prolyl-tRNA synthetase" +BW25113_0195 tsaA 0 215374 216081 -1 2115 0.12146892655367232 708 86 "tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase and SAM-dependent" +BW25113_0195__5prime tsaA__5prime 0 216082 216279 -1 1557 0.30303030303030304 198 60 "tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase and SAM-dependent" +BW25113_0195__3prime tsaA__3prime 0 215176 215373 -1 28 0.010101010101010102 198 2 "tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase and SAM-dependent" +BW25113_0196 rcsF 0 216078 216482 -1 2364 0.2074074074074074 405 84 "putative outer membrane protein" +BW25113_0196__5prime rcsF__5prime 0 216483 216680 -1 249 0.08585858585858586 198 17 "putative outer membrane protein" +BW25113_0196__3prime rcsF__3prime 0 215880 216077 -1 967 0.10606060606060606 198 21 "putative outer membrane protein" +BW25113_0197 metQ 0 216600 217415 -1 1555 0.10049019607843138 816 82 "DL-methionine transporter subunit" +BW25113_0197__5prime metQ__5prime 0 217416 217613 -1 899 0.23232323232323232 198 46 "DL-methionine transporter subunit" +BW25113_0197__3prime metQ__3prime 0 216402 216599 -1 786 0.1414141414141414 198 28 "DL-methionine transporter subunit" +BW25113_0198 metI 0 217455 218108 -1 2130 0.1559633027522936 654 102 "DL-methionine transporter subunit" +BW25113_0198__5prime metI__5prime 0 218109 218306 -1 889 0.18686868686868688 198 37 "DL-methionine transporter subunit" +BW25113_0198__3prime metI__3prime 0 217257 217454 -1 682 0.1414141414141414 198 28 "DL-methionine transporter subunit" +BW25113_0199 metN 0 218101 219132 -1 2993 0.13565891472868216 1032 140 "DL-methionine transporter subunit" +BW25113_0199__5prime metN__5prime 0 219133 219330 -1 288 0.06060606060606061 198 12 "DL-methionine transporter subunit" +BW25113_0199__3prime metN__3prime 0 217903 218100 -1 380 0.08585858585858586 198 17 "DL-methionine transporter subunit" +BW25113_0200 gmhB 0 219320 219895 1 494 0.05555555555555555 576 32 "D and D-heptose 1 and 7-bisphosphate phosphatase" +BW25113_0200__5prime gmhB__5prime 0 219122 219319 1 281 0.05555555555555555 198 11 "D and D-heptose 1 and 7-bisphosphate phosphatase" +BW25113_0200__3prime gmhB__3prime 0 219896 220093 1 168 0.06565656565656566 198 13 "D and D-heptose 1 and 7-bisphosphate phosphatase" +BW25113_0201 rrsH 0 220258 221799 1 1252 0.08495460440985733 1542 131 "16S ribosomal RNA of rrnH operon" +BW25113_0201__5prime rrsH__5prime 0 220060 220257 1 83 0.050505050505050504 198 10 "16S ribosomal RNA of rrnH operon" +BW25113_0201__3prime rrsH__3prime 0 221800 221997 1 33 0.025252525252525252 198 5 "16S ribosomal RNA of rrnH operon" +BW25113_0202 ileV 0 221868 221944 1 10 0.025974025974025976 77 2 "tRNA-Ile" +BW25113_0202__5prime ileV__5prime 0 221670 221867 1 53 0.045454545454545456 198 9 "tRNA-Ile" +BW25113_0202__3prime ileV__3prime 0 221945 222142 1 71 0.045454545454545456 198 9 "tRNA-Ile" +BW25113_0203 alaV 0 221987 222062 1 66 0.10526315789473684 76 8 "tRNA-Ala" +BW25113_0203__5prime alaV__5prime 0 221789 221986 1 23 0.020202020202020204 198 4 "tRNA-Ala" +BW25113_0203__3prime alaV__3prime 0 222063 222260 1 22 0.020202020202020204 198 4 "tRNA-Ala" +BW25113_0204 rrlH 0 222246 225149 1 1868 0.0709366391184573 2904 206 "23S ribosomal RNA of rrnH operon" +BW25113_0204__5prime rrlH__5prime 0 222048 222245 1 35 0.030303030303030304 198 6 "23S ribosomal RNA of rrnH operon" +BW25113_0204__3prime rrlH__3prime 0 225150 225347 1 119 0.08585858585858586 198 17 "23S ribosomal RNA of rrnH operon" +BW25113_0205 rrfH 0 225243 225362 1 61 0.075 120 9 "5S ribosomal RNA of rrnH operon" +BW25113_0205__5prime rrfH__5prime 0 225045 225242 1 110 0.08080808080808081 198 16 "5S ribosomal RNA of rrnH operon" +BW25113_0205__3prime rrfH__3prime 0 225363 225560 1 53 0.025252525252525252 198 5 "5S ribosomal RNA of rrnH operon" +BW25113_0206 aspU 0 225415 225491 1 42 0.05194805194805195 77 4 "tRNA-Asp" +BW25113_0206__5prime aspU__5prime 0 225217 225414 1 72 0.050505050505050504 198 10 "tRNA-Asp" +BW25113_0206__3prime aspU__3prime 0 225492 225689 1 111 0.050505050505050504 198 10 "tRNA-Asp" +BW25113_0207 dkgB 0 225654 226457 1 826 0.0472636815920398 804 38 "2 and 5-diketo-D-gluconate reductase B" +BW25113_0207__5prime dkgB__5prime 0 225456 225653 1 84 0.04040404040404041 198 8 "2 and 5-diketo-D-gluconate reductase B" +BW25113_0207__3prime dkgB__3prime 0 226458 226655 1 484 0.13131313131313133 198 26 "2 and 5-diketo-D-gluconate reductase B" +BW25113_0208 yafC 0 226454 227368 -1 1147 0.07868852459016394 915 72 "LysR family putative transcriptional regulator" +BW25113_0208__5prime yafC__5prime 0 227369 227566 -1 92 0.030303030303030304 198 6 "LysR family putative transcriptional regulator" +BW25113_0208__3prime yafC__3prime 0 226256 226453 -1 84 0.03535353535353535 198 7 "LysR family putative transcriptional regulator" +BW25113_0209 yafD 0 227609 228409 1 1112 0.07740324594257178 801 62 "endo/exonuclease/phosphatase family protein" +BW25113_0209__5prime yafD__5prime 0 227411 227608 1 117 0.050505050505050504 198 10 "endo/exonuclease/phosphatase family protein" +BW25113_0209__3prime yafD__3prime 0 228410 228607 1 172 0.050505050505050504 198 10 "endo/exonuclease/phosphatase family protein" +BW25113_0210 yafE 0 228413 229036 1 552 0.04326923076923077 624 27 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0210__5prime yafE__5prime 0 228215 228412 1 128 0.030303030303030304 198 6 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0210__3prime yafE__3prime 0 229037 229234 1 114 0.020202020202020204 198 4 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0211 mltD 0 229084 230442 -1 2818 0.10522442972774099 1359 143 "putative membrane-bound lytic murein transglycosylase D" +BW25113_0211__5prime mltD__5prime 0 230443 230640 -1 10 0.005050505050505051 198 1 "putative membrane-bound lytic murein transglycosylase D" +BW25113_0211__3prime mltD__3prime 0 228886 229083 -1 48 0.015151515151515152 198 3 "putative membrane-bound lytic murein transglycosylase D" +BW25113_0212 gloB 0 230514 231269 -1 723 0.05555555555555555 756 42 "hydroxyacylglutathione hydrolase" +BW25113_0212__5prime gloB__5prime 0 231270 231467 -1 261 0.07575757575757576 198 15 "hydroxyacylglutathione hydrolase" +BW25113_0212__3prime gloB__3prime 0 230316 230513 -1 468 0.14646464646464646 198 29 "hydroxyacylglutathione hydrolase" +BW25113_0213 yafS 0 231303 232025 1 871 0.05394190871369295 723 39 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0213__5prime yafS__5prime 0 231105 231302 1 375 0.07575757575757576 198 15 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0213__3prime yafS__3prime 0 232026 232223 1 475 0.08585858585858586 198 17 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0214 rnhA 0 232022 232489 -1 931 0.07478632478632478 468 35 "ribonuclease HI and degrades RNA of DNA-RNA hybrids" +BW25113_0214__5prime rnhA__5prime 0 232490 232687 -1 227 0.06060606060606061 198 12 "ribonuclease HI and degrades RNA of DNA-RNA hybrids" +BW25113_0214__3prime rnhA__3prime 0 231824 232021 -1 426 0.0707070707070707 198 14 "ribonuclease HI and degrades RNA of DNA-RNA hybrids" +BW25113_0215 dnaQ 0 232554 233285 1 581 0.04371584699453552 732 32 "DNA polymerase III epsilon subunit" +BW25113_0215__5prime dnaQ__5prime 0 232356 232553 1 447 0.07575757575757576 198 15 "DNA polymerase III epsilon subunit" +BW25113_0215__3prime dnaQ__3prime 0 233286 233483 1 632 0.19696969696969696 198 39 "DNA polymerase III epsilon subunit" +BW25113_0216 aspV 0 233418 233494 1 347 0.2727272727272727 77 21 "tRNA-Asp" +BW25113_0216__5prime aspV__5prime 0 233220 233417 1 350 0.11616161616161616 198 23 "tRNA-Asp" +BW25113_0216__3prime aspV__3prime 0 233495 233692 1 355 0.12121212121212122 198 24 "tRNA-Asp" +BW25113_0217 yafT 0 233822 234607 1 7764 0.33587786259541985 786 264 "lipoprotein" +BW25113_0217__5prime yafT__5prime 0 233624 233821 1 54 0.020202020202020204 198 4 "lipoprotein" +BW25113_0217__3prime yafT__3prime 0 234608 234805 1 123 0.06060606060606061 198 12 "lipoprotein" +BW25113_4586 ykfM 0 234744 235223 -1 238 0.04791666666666667 480 23 "lethality reduction protein and putative inner membrane protein" +BW25113_4586__5prime ykfM__5prime 0 235224 235421 -1 1511 0.23737373737373738 198 47 "lethality reduction protein and putative inner membrane protein" +BW25113_4586__3prime ykfM__3prime 0 234546 234743 -1 351 0.12626262626262627 198 25 "lethality reduction protein and putative inner membrane protein" +BW25113_0218 yafU 0 235233 235589 -1 2956 0.22128851540616246 357 79 "235232_235589" +BW25113_0218__5prime yafU__5prime 0 235590 235787 -1 1586 0.29797979797979796 198 59 "235232_235589" +BW25113_0218__3prime yafU__3prime 0 235035 235232 -1 156 0.06060606060606061 198 12 "235232_235589" +BW25113_4503 yafF 0 235593 235865 1 2238 0.315018315018315 273 86 "235592_235865" +BW25113_4503__5prime yafF__5prime 0 235395 235592 1 2327 0.2474747474747475 198 49 "235592_235865" +BW25113_4503__3prime yafF__3prime 0 235866 236063 1 847 0.17676767676767677 198 35 "235592_235865" +BW25113_0219 yafV 0 235906 236676 -1 2681 0.13229571984435798 771 102 "putative NAD(P)-binding C-N hydrolase family amidase" +BW25113_0219__5prime yafV__5prime 0 236677 236874 -1 851 0.17676767676767677 198 35 "putative NAD(P)-binding C-N hydrolase family amidase" +BW25113_0219__3prime yafV__3prime 0 235708 235905 -1 1233 0.29292929292929293 198 58 "putative NAD(P)-binding C-N hydrolase family amidase" +BW25113_0220 ivy 0 236830 237303 1 1717 0.1371308016877637 474 65 "inhibitor of c-type lysozyme and periplasmic" +BW25113_0220__5prime ivy__5prime 0 236632 236829 1 757 0.17676767676767677 198 35 "inhibitor of c-type lysozyme and periplasmic" +BW25113_0220__3prime ivy__3prime 0 237304 237501 1 480 0.0707070707070707 198 14 "inhibitor of c-type lysozyme and periplasmic" +BW25113_0221 fadE 0 237346 239790 -1 4859 0.08834355828220859 2445 216 "acyl coenzyme A dehydrogenase" +BW25113_0221__5prime fadE__5prime 0 239791 239988 -1 239 0.050505050505050504 198 10 "acyl coenzyme A dehydrogenase" +BW25113_0221__3prime fadE__3prime 0 237148 237345 -1 305 0.0707070707070707 198 14 "acyl coenzyme A dehydrogenase" +BW25113_0222 gmhA 0 240030 240608 1 500 0.05181347150259067 579 30 "D-sedoheptulose 7-phosphate isomerase" +BW25113_0222__5prime gmhA__5prime 0 239832 240029 1 239 0.050505050505050504 198 10 "D-sedoheptulose 7-phosphate isomerase" +BW25113_0222__3prime gmhA__3prime 0 240609 240806 1 572 0.09595959595959595 198 19 "D-sedoheptulose 7-phosphate isomerase" +240615_240750 240615_240750 0 240616 240750 1 335 0.08888888888888889 135 12 "240615_240750" +240615_240750__5prime 240615_240750__5prime 0 240418 240615 1 173 0.045454545454545456 198 9 "240615_240750" +240615_240750__3prime 240615_240750__3prime 0 240751 240948 1 1373 0.1414141414141414 198 28 "240615_240750" +BW25113_0223 yafJ 0 240814 241581 1 2380 0.11197916666666667 768 86 "putative amidotransfease" +BW25113_0223__5prime yafJ__5prime 0 240616 240813 1 611 0.10606060606060606 198 21 "putative amidotransfease" +BW25113_0223__3prime yafJ__3prime 0 241582 241779 1 363 0.0707070707070707 198 14 "putative amidotransfease" +BW25113_0224 yafK 0 241552 242292 -1 2064 0.1241565452091768 741 92 "L and D-transpeptidase-related protein" +BW25113_0224__5prime yafK__5prime 0 242293 242490 -1 392 0.0707070707070707 198 14 "L and D-transpeptidase-related protein" +BW25113_0224__3prime yafK__3prime 0 241354 241551 -1 554 0.1111111111111111 198 22 "L and D-transpeptidase-related protein" +BW25113_0225 yafQ 0 242448 242726 -1 483 0.0967741935483871 279 27 "translation inhibitor toxin of toxin-antitoxin pair YafQ/DinJ" +BW25113_0225__5prime yafQ__5prime 0 242727 242924 -1 1120 0.16666666666666666 198 33 "translation inhibitor toxin of toxin-antitoxin pair YafQ/DinJ" +BW25113_0225__3prime yafQ__3prime 0 242250 242447 -1 451 0.09090909090909091 198 18 "translation inhibitor toxin of toxin-antitoxin pair YafQ/DinJ" +BW25113_0226 dinJ 0 242729 242989 -1 1187 0.1417624521072797 261 37 "antitoxin of YafQ-DinJ toxin-antitoxin system" +BW25113_0226__5prime dinJ__5prime 0 242990 243187 -1 153 0.06060606060606061 198 12 "antitoxin of YafQ-DinJ toxin-antitoxin system" +BW25113_0226__3prime dinJ__3prime 0 242531 242728 -1 432 0.11616161616161616 198 23 "antitoxin of YafQ-DinJ toxin-antitoxin system" +BW25113_0227 yafL 0 243199 243948 1 1386 0.09333333333333334 750 70 "putative lipoprotein and C40 family peptidase" +BW25113_0227__5prime yafL__5prime 0 243001 243198 1 131 0.05555555555555555 198 11 "putative lipoprotein and C40 family peptidase" +BW25113_0227__3prime yafL__3prime 0 243949 244146 1 197 0.07575757575757576 198 15 "putative lipoprotein and C40 family peptidase" +243944_244028 243944_244028 0 243945 244028 1 150 0.13095238095238096 84 11 "243944_244028" +243944_244028__5prime 243944_244028__5prime 0 243747 243944 1 156 0.06565656565656566 198 13 "243944_244028" +243944_244028__3prime 243944_244028__3prime 0 244029 244226 1 381 0.1111111111111111 198 22 "243944_244028" +BW25113_0228 rayT 0 244124 244621 1 1061 0.12048192771084337 498 60 "RAYT REP element-mobilizing transposase; TnpA(REP)" +BW25113_0228__5prime rayT__5prime 0 243926 244123 1 221 0.0707070707070707 198 14 "RAYT REP element-mobilizing transposase; TnpA(REP)" +BW25113_0228__3prime rayT__3prime 0 244622 244819 1 167 0.06060606060606061 198 12 "RAYT REP element-mobilizing transposase; TnpA(REP)" +244633_244821 244633_244821 0 244634 244821 1 69 0.0425531914893617 188 8 "244633_244821" +244633_244821__5prime 244633_244821__5prime 0 244436 244633 1 511 0.15151515151515152 198 30 "244633_244821" +244633_244821__3prime 244633_244821__3prime 0 244822 245019 1 465 0.06565656565656566 198 13 "244633_244821" +BW25113_0229 lfhA 0 244845 246557 -1 2529 0.08172796263864565 1713 140 "244844_246557" +BW25113_0229__5prime lfhA__5prime 0 246558 246755 -1 289 0.045454545454545456 198 9 "244844_246557" +BW25113_0229__3prime lfhA__3prime 0 244647 244844 -1 221 0.06060606060606061 198 12 "244844_246557" +BW25113_0230 lafU 0 246559 247314 1 1572 0.07407407407407407 756 56 "246558_247314" +BW25113_0230__5prime lafU__5prime 0 246361 246558 1 133 0.06565656565656566 198 13 "246558_247314" +BW25113_0230__3prime lafU__3prime 0 247315 247512 1 604 0.1111111111111111 198 22 "246558_247314" +BW25113_0231 dinB 0 247385 248440 1 2548 0.11458333333333333 1056 121 "DNA polymerase IV" +BW25113_0231__5prime dinB__5prime 0 247187 247384 1 599 0.09090909090909091 198 18 "DNA polymerase IV" +BW25113_0231__3prime dinB__3prime 0 248441 248638 1 254 0.050505050505050504 198 10 "DNA polymerase IV" +BW25113_0232 yafN 0 248492 248785 1 327 0.04421768707482993 294 13 "antitoxin of the YafO-YafN toxin-antitoxin system" +BW25113_0232__5prime yafN__5prime 0 248294 248491 1 672 0.17676767676767677 198 35 "antitoxin of the YafO-YafN toxin-antitoxin system" +BW25113_0232__3prime yafN__3prime 0 248786 248983 1 3950 0.40404040404040403 198 80 "antitoxin of the YafO-YafN toxin-antitoxin system" +BW25113_0233 yafO 0 248788 249186 1 5508 0.3533834586466165 399 141 "mRNA interferase toxin of the YafO-YafN toxin-antitoxin system" +BW25113_0233__5prime yafO__5prime 0 248590 248787 1 402 0.07575757575757576 198 15 "mRNA interferase toxin of the YafO-YafN toxin-antitoxin system" +BW25113_0233__3prime yafO__3prime 0 249187 249384 1 1457 0.29292929292929293 198 58 "mRNA interferase toxin of the YafO-YafN toxin-antitoxin system" +BW25113_0234 yafP 0 249196 249648 1 4307 0.30022075055187636 453 136 "putative acyl-CoA transferase" +BW25113_0234__5prime yafP__5prime 0 248998 249195 1 1612 0.31313131313131315 198 62 "putative acyl-CoA transferase" +BW25113_0234__3prime yafP__3prime 0 249649 249846 1 1042 0.16161616161616163 198 32 "putative acyl-CoA transferase" +BW25113_0235 ykfJ 0 249966 250172 1 3533 0.41545893719806765 207 86 "249965_250172" +BW25113_0235__5prime ykfJ__5prime 0 249768 249965 1 2951 0.4292929292929293 198 85 "249965_250172" +BW25113_0235__3prime ykfJ__3prime 0 250173 250370 1 1333 0.22727272727272727 198 45 "249965_250172" +BW25113_0236 prfH 0 250189 250689 1 1874 0.14171656686626746 501 71 "250188_250689" +BW25113_0236__5prime prfH__5prime 0 249991 250188 1 3397 0.398989898989899 198 79 "250188_250689" +BW25113_0236__3prime prfH__3prime 0 250690 250887 1 796 0.1414141414141414 198 28 "250188_250689" +250703_250731 250703_250731 0 250704 250731 1 72 0.17857142857142858 28 5 "250703_250731" +250703_250731__5prime 250703_250731__5prime 0 250506 250703 1 303 0.08585858585858586 198 17 "250703_250731" +250703_250731__3prime 250703_250731__3prime 0 250732 250929 1 1033 0.15151515151515152 198 30 "250703_250731" +BW25113_0237 pepD 0 250746 252203 -1 4021 0.12071330589849108 1458 176 "aminoacyl-histidine dipeptidase (peptidase D)" +BW25113_0237__5prime pepD__5prime 0 252204 252401 -1 775 0.12626262626262627 198 25 "aminoacyl-histidine dipeptidase (peptidase D)" +BW25113_0237__3prime pepD__3prime 0 250548 250745 -1 306 0.10101010101010101 198 20 "aminoacyl-histidine dipeptidase (peptidase D)" +BW25113_0238 gpt 0 252464 252922 1 1638 0.1830065359477124 459 84 "xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase" +BW25113_0238__5prime gpt__5prime 0 252266 252463 1 747 0.10101010101010101 198 20 "xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase" +BW25113_0238__3prime gpt__3prime 0 252923 253120 1 493 0.10101010101010101 198 20 "xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase" +BW25113_0239 frsA 0 253014 254258 1 3372 0.1140562248995984 1245 142 "fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity" +BW25113_0239__5prime frsA__5prime 0 252816 253013 1 336 0.045454545454545456 198 9 "fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity" +BW25113_0239__3prime frsA__3prime 0 254259 254456 1 664 0.1717171717171717 198 34 "fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity" +BW25113_0240 crl 0 254316 254717 1 2762 0.3009950248756219 402 121 "RNA polymerase holoenzyme assembly factor crl" +BW25113_0240__5prime crl__5prime 0 254118 254315 1 417 0.09595959595959595 198 19 "RNA polymerase holoenzyme assembly factor crl" +BW25113_0240__3prime crl__3prime 0 254718 254915 1 922 0.21212121212121213 198 42 "RNA polymerase holoenzyme assembly factor crl" +254726_254747 254726_254747 0 254727 254747 1 264 0.3333333333333333 21 7 "254726_254747" +254726_254747__5prime 254726_254747__5prime 0 254529 254726 1 2184 0.47474747474747475 198 94 "254726_254747" +254726_254747__3prime 254726_254747__3prime 0 254748 254945 1 1004 0.21212121212121213 198 42 "254726_254747" +BW25113_0241 phoE 0 254756 255811 -1 14770 0.3645833333333333 1056 385 "outer membrane phosphoporin protein E" +BW25113_0241__5prime phoE__5prime 0 255812 256009 -1 415 0.15656565656565657 198 31 "outer membrane phosphoporin protein E" +BW25113_0241__3prime phoE__3prime 0 254558 254755 -1 2408 0.494949494949495 198 98 "outer membrane phosphoporin protein E" +BW25113_0242 proB 0 256099 257202 1 2514 0.10960144927536232 1104 121 "gamma-glutamate kinase" +BW25113_0242__5prime proB__5prime 0 255901 256098 1 614 0.17676767676767677 198 35 "gamma-glutamate kinase" +BW25113_0242__3prime proB__3prime 0 257203 257400 1 442 0.12121212121212122 198 24 "gamma-glutamate kinase" +BW25113_0243 proA 0 257214 258467 1 3167 0.10366826156299841 1254 130 "gamma-glutamylphosphate reductase" +BW25113_0243__5prime proA__5prime 0 257016 257213 1 461 0.09090909090909091 198 18 "gamma-glutamylphosphate reductase" +BW25113_0243__3prime proA__3prime 0 258468 258665 1 403 0.06060606060606061 198 12 "gamma-glutamylphosphate reductase" +BW25113_0244 thrW 0 258582 258657 1 126 0.06578947368421052 76 5 "tRNA-Thr" +BW25113_0244__5prime thrW__5prime 0 258384 258581 1 496 0.07575757575757576 198 15 "tRNA-Thr" +BW25113_0244__3prime thrW__3prime 0 258658 258855 1 371 0.08585858585858586 198 17 "tRNA-Thr" +258668_292976 258668_292976 0 258669 292976 1 153335 0.15462865803894135 34308 5305 "258668_292976" +258668_292976__5prime 258668_292976__5prime 0 258471 258668 1 403 0.06060606060606061 198 12 "258668_292976" +258668_292976__3prime 258668_292976__3prime 0 292977 293174 1 896 0.25252525252525254 198 50 "258668_292976" +BW25113_4626 ykfN 0 258861 258923 -1 89 0.047619047619047616 63 3 "258860_258923" +BW25113_4626__5prime ykfN__5prime 0 258924 259121 -1 176 0.08080808080808081 198 16 "258860_258923" +BW25113_4626__3prime ykfN__3prime 0 258663 258860 -1 371 0.08585858585858586 198 17 "258860_258923" +BW25113_0245 ykfI 0 259039 259380 -1 1396 0.1608187134502924 342 55 "CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system" +BW25113_0245__5prime ykfI__5prime 0 259381 259578 -1 741 0.10606060606060606 198 21 "CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system" +BW25113_0245__3prime ykfI__3prime 0 258841 259038 -1 220 0.06060606060606061 198 12 "CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system" +BW25113_0246 yafW 0 259401 259718 -1 1204 0.1289308176100629 318 41 "CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system" +BW25113_0246__5prime yafW__5prime 0 259719 259916 -1 637 0.19696969696969696 198 39 "CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system" +BW25113_0246__3prime yafW__3prime 0 259203 259400 -1 1233 0.20202020202020202 198 40 "CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system" +BW25113_4504 ykfH 0 259737 259958 -1 608 0.17117117117117117 222 38 "uncharacterized protein" +BW25113_4504__5prime ykfH__5prime 0 259959 260156 -1 444 0.07575757575757576 198 15 "uncharacterized protein" +BW25113_4504__3prime ykfH__3prime 0 259539 259736 -1 595 0.13636363636363635 198 27 "uncharacterized protein" +BW25113_0247 ykfG 0 259967 260443 -1 1111 0.09853249475890985 477 47 "CP4-6 prophage; RadC-like JAB domain protein" +BW25113_0247__5prime ykfG__5prime 0 260444 260641 -1 1128 0.20707070707070707 198 41 "CP4-6 prophage; RadC-like JAB domain protein" +BW25113_0247__3prime ykfG__3prime 0 259769 259966 -1 387 0.13131313131313133 198 26 "CP4-6 prophage; RadC-like JAB domain protein" +BW25113_0248 yafX 0 260459 260917 -1 2351 0.20043572984749455 459 92 "CP4-6 prophage; uncharacterized protein" +BW25113_0248__5prime yafX__5prime 0 260918 261115 -1 705 0.13131313131313133 198 26 "CP4-6 prophage; uncharacterized protein" +BW25113_0248__3prime yafX__3prime 0 260261 260458 -1 543 0.10606060606060606 198 21 "CP4-6 prophage; uncharacterized protein" +BW25113_0249 ykfF 0 261015 261254 -1 632 0.12916666666666668 240 31 "CP4-6 prophage; uncharacterized protein" +BW25113_0249__5prime ykfF__5prime 0 261255 261452 -1 442 0.1111111111111111 198 22 "CP4-6 prophage; uncharacterized protein" +BW25113_0249__3prime ykfF__3prime 0 260817 261014 -1 931 0.19696969696969696 198 39 "CP4-6 prophage; uncharacterized protein" +BW25113_0250 ykfB 0 261331 261798 -1 1641 0.14102564102564102 468 66 "CP4-6 prophage; uncharacterized protein" +BW25113_0250__5prime ykfB__5prime 0 261799 261996 -1 660 0.10606060606060606 198 21 "CP4-6 prophage; uncharacterized protein" +BW25113_0250__3prime ykfB__3prime 0 261133 261330 -1 423 0.10101010101010101 198 20 "CP4-6 prophage; uncharacterized protein" +BW25113_0251 yafY 0 261821 262264 -1 1384 0.12837837837837837 444 57 "lipoprotein and inner membrane; overproduction stimulates degP expression; CP4-6 prophage" +BW25113_0251__5prime yafY__5prime 0 262265 262462 -1 907 0.11616161616161616 198 23 "lipoprotein and inner membrane; overproduction stimulates degP expression; CP4-6 prophage" +BW25113_0251__3prime yafY__3prime 0 261623 261820 -1 719 0.13131313131313133 198 26 "lipoprotein and inner membrane; overproduction stimulates degP expression; CP4-6 prophage" +BW25113_4627 ykfL 0 262264 262485 -1 951 0.10810810810810811 222 24 "262263_262485" +BW25113_4627__5prime ykfL__5prime 0 262486 262683 -1 270 0.09595959595959595 198 19 "262263_262485" +BW25113_4627__3prime ykfL__3prime 0 262066 262263 -1 510 0.12121212121212122 198 24 "262263_262485" +BW25113_4628 ykfK 0 262487 262678 -1 270 0.09895833333333333 192 19 "262486_262678" +BW25113_4628__5prime ykfK__5prime 0 262679 262876 -1 245 0.0707070707070707 198 14 "262486_262678" +BW25113_4628__3prime ykfK__3prime 0 262289 262486 -1 951 0.12121212121212122 198 24 "262486_262678" +BW25113_0252 yafZ 0 262895 263716 -1 3177 0.14476885644768855 822 119 "CP4-6 prophage; conserved protein" +BW25113_0252__5prime yafZ__5prime 0 263717 263914 -1 626 0.08585858585858586 198 17 "CP4-6 prophage; conserved protein" +BW25113_0252__3prime yafZ__3prime 0 262697 262894 -1 245 0.0707070707070707 198 14 "CP4-6 prophage; conserved protein" +BW25113_0253 ykfA 0 263808 264671 -1 3723 0.16203703703703703 864 140 "CP4-6 prophage; putative GTP-binding protein" +BW25113_0253__5prime ykfA__5prime 0 264672 264869 -1 401 0.12626262626262627 198 25 "CP4-6 prophage; putative GTP-binding protein" +BW25113_0253__3prime ykfA__3prime 0 263610 263807 -1 861 0.10101010101010101 198 20 "CP4-6 prophage; putative GTP-binding protein" +BW25113_0254 perR 0 265000 265893 -1 3795 0.18232662192393737 894 163 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0254__5prime perR__5prime 0 265894 266091 -1 2465 0.23737373737373738 198 47 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0254__3prime perR__3prime 0 264802 264999 -1 527 0.15656565656565657 198 31 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_4587 insN 0 265989 267900 1 6425 0.1694560669456067 1912 324 "265988_267900" +BW25113_4587__5prime insN__5prime 0 265791 265988 1 2054 0.2474747474747475 198 49 "265988_267900" +BW25113_4587__3prime insN__3prime 0 267901 268098 1 712 0.15151515151515152 198 30 "265988_267900" +BW25113_0256 insI1 0 266314 267465 1 3845 0.21006944444444445 1152 242 "IS30 transposase" +BW25113_0256__5prime insI1__5prime 0 266116 266313 1 226 0.03535353535353535 198 7 "IS30 transposase" +BW25113_0256__3prime insI1__3prime 0 267466 267663 1 319 0.10101010101010101 198 20 "IS30 transposase" +BW25113_4690 eyeA 0 268291 268365 1 300 0.16 75 12 "novel sRNA and function unknown and CP4-6 propahge" +BW25113_4690__5prime eyeA__5prime 0 268093 268290 1 355 0.08080808080808081 198 16 "novel sRNA and function unknown and CP4-6 propahge" +BW25113_4690__3prime eyeA__3prime 0 268366 268563 1 613 0.14646464646464646 198 29 "novel sRNA and function unknown and CP4-6 propahge" +BW25113_0258 ykfC 0 268558 269665 1 4259 0.157942238267148 1108 175 "268557_269665" +BW25113_0258__5prime ykfC__5prime 0 268360 268557 1 628 0.15151515151515152 198 30 "268557_269665" +BW25113_0258__3prime ykfC__3prime 0 269666 269863 1 388 0.12626262626262627 198 25 "268557_269665" +269665_270860 269665_270860 0 269666 270860 -1 2291 0.14644351464435146 1195 175 "269665_270860" +269665_270860__5prime 269665_270860__5prime 0 270861 271058 -1 197 0.07575757575757576 198 15 "269665_270860" +269665_270860__3prime 269665_270860__3prime 0 269468 269665 -1 953 0.16666666666666666 198 33 "269665_270860" +BW25113_0259 insH1 0 269812 270828 -1 1988 0.15634218289085547 1017 159 "IS5 transposase and trans-activator" +BW25113_0259__5prime insH1__5prime 0 270829 271026 -1 212 0.09090909090909091 198 18 "IS5 transposase and trans-activator" +BW25113_0259__3prime insH1__3prime 0 269614 269811 -1 381 0.08585858585858586 198 17 "IS5 transposase and trans-activator" +270205_270540 270205_270540 0 270206 270540 1 336 0.10746268656716418 335 36 "270205_270540" +270205_270540__5prime 270205_270540__5prime 0 270008 270205 1 400 0.15656565656565657 198 31 "270205_270540" +270205_270540__3prime 270205_270540__3prime 0 270541 270738 1 419 0.16666666666666666 198 33 "270205_270540" +270540_271761 270540_271761 0 270541 271761 1 3089 0.12694512694512694 1221 155 "270540_271761" +270540_271761__5prime 270540_271761__5prime 0 270343 270540 1 188 0.10606060606060606 198 21 "270540_271761" +270540_271761__3prime 270540_271761__3prime 0 271762 271959 1 447 0.10606060606060606 198 21 "270540_271761" +BW25113_0260 mmuP 0 271036 272439 1 4252 0.11182336182336182 1404 157 "CP4-6 prophage; putative S-methylmethionine transporter" +BW25113_0260__5prime mmuP__5prime 0 270838 271035 1 212 0.09090909090909091 198 18 "CP4-6 prophage; putative S-methylmethionine transporter" +BW25113_0260__3prime mmuP__3prime 0 272440 272637 1 210 0.06060606060606061 198 12 "CP4-6 prophage; putative S-methylmethionine transporter" +271761_272190 271761_272190 0 271762 272190 1 968 0.10722610722610723 429 46 "271761_272190" +271761_272190__5prime 271761_272190__5prime 0 271564 271761 1 392 0.050505050505050504 198 10 "271761_272190" +271761_272190__3prime 271761_272190__3prime 0 272191 272388 1 1185 0.15151515151515152 198 30 "271761_272190" +BW25113_0261 mmuM 0 272426 273358 1 2701 0.09431939978563773 933 88 "CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase" +BW25113_0261__5prime mmuM__5prime 0 272228 272425 1 1159 0.15151515151515152 198 30 "CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase" +BW25113_0261__3prime mmuM__3prime 0 273359 273556 1 754 0.16161616161616163 198 32 "CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase" +273385_273452 273385_273452 0 273386 273452 1 153 0.14925373134328357 67 10 "273385_273452" +273385_273452__5prime 273385_273452__5prime 0 273188 273385 1 318 0.10606060606060606 198 21 "273385_273452" +273385_273452__3prime 273385_273452__3prime 0 273453 273650 1 696 0.13636363636363635 198 27 "273385_273452" +BW25113_0262 afuC 0 273467 274513 -1 3210 0.11461318051575932 1047 120 "CP4-6 prophage; putative ferric transporter subunit" +BW25113_0262__5prime afuC__5prime 0 274514 274711 -1 410 0.12626262626262627 198 25 "CP4-6 prophage; putative ferric transporter subunit" +BW25113_0262__3prime afuC__3prime 0 273269 273466 -1 386 0.13131313131313133 198 26 "CP4-6 prophage; putative ferric transporter subunit" +BW25113_0263 afuB 0 274525 274872 -1 1208 0.1206896551724138 348 42 "274524_274872" +BW25113_0263__5prime afuB__5prime 0 274873 275070 -1 599 0.2222222222222222 198 44 "274524_274872" +BW25113_0263__3prime afuB__3prime 0 274327 274524 -1 144 0.04040404040404041 198 8 "274524_274872" +274873_275641 274873_275641 0 274874 275641 -1 2230 0.23567708333333334 768 181 "274873_275641" +274873_275641__5prime 274873_275641__5prime 0 275642 275839 -1 747 0.29292929292929293 198 58 "274873_275641" +274873_275641__3prime 274873_275641__3prime 0 274676 274873 -1 894 0.12121212121212122 198 24 "274873_275641" +BW25113_0264 insB1 0 274889 275392 -1 1625 0.251984126984127 504 127 "IS1 transposase B" +BW25113_0264__5prime insB1__5prime 0 275393 275590 -1 552 0.24242424242424243 198 48 "IS1 transposase B" +BW25113_0264__3prime insB1__3prime 0 274691 274888 -1 894 0.12121212121212122 198 24 "IS1 transposase B" +BW25113_0265 insA 0 275311 275586 -1 649 0.20652173913043478 276 57 "IS1 repressor TnpA" +BW25113_0265__5prime insA__5prime 0 275587 275784 -1 597 0.2777777777777778 198 55 "IS1 repressor TnpA" +BW25113_0265__3prime insA__3prime 0 275113 275310 -1 623 0.26262626262626265 198 52 "IS1 repressor TnpA" +BW25113_4708 insI1 0 275642 275815 1 672 0.3103448275862069 174 54 "275641_275815" +BW25113_4708__5prime insI1__5prime 0 275444 275641 1 529 0.22727272727272727 198 45 "275641_275815" +BW25113_4708__3prime insI1__3prime 0 275816 276013 1 311 0.06565656565656566 198 13 "275641_275815" +275824_276136 275824_276136 0 275825 276136 -1 585 0.08333333333333333 312 26 "275824_276136" +275824_276136__5prime 275824_276136__5prime 0 276137 276334 -1 1707 0.25757575757575757 198 51 "275824_276136" +275824_276136__3prime 275824_276136__3prime 0 275627 275824 -1 747 0.29292929292929293 198 58 "275824_276136" +BW25113_4505 insX 0 275825 276073 -1 299 0.0642570281124498 249 16 "275824_276073" +BW25113_4505__5prime insX__5prime 0 276074 276271 -1 1531 0.2474747474747475 198 49 "275824_276073" +BW25113_4505__3prime insX__3prime 0 275627 275824 -1 747 0.29292929292929293 198 58 "275824_276073" +BW25113_0266 yagB 0 276138 276446 -1 2186 0.24919093851132687 309 77 "276137_276446" +BW25113_0266__5prime yagB__5prime 0 276447 276644 -1 1024 0.16161616161616163 198 32 "276137_276446" +BW25113_0266__3prime yagB__3prime 0 275940 276137 -1 446 0.10101010101010101 198 20 "276137_276446" +BW25113_0267 yagA 0 276540 277694 -1 4591 0.14372294372294372 1155 166 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0267__5prime yagA__5prime 0 277695 277892 -1 674 0.13131313131313133 198 26 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0267__3prime yagA__3prime 0 276342 276539 -1 466 0.13636363636363635 198 27 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0268 yagE 0 277989 278897 1 2208 0.12211221122112212 909 111 "2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage" +BW25113_0268__5prime yagE__5prime 0 277791 277988 1 102 0.020202020202020204 198 4 "2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage" +BW25113_0268__3prime yagE__3prime 0 278898 279095 1 449 0.0707070707070707 198 14 "2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage" +BW25113_0269 yagF 0 278912 280879 1 7062 0.11178861788617886 1968 220 "CP4-6 prophage; dehydratase family protein" +BW25113_0269__5prime yagF__5prime 0 278714 278911 1 271 0.09595959595959595 198 19 "CP4-6 prophage; dehydratase family protein" +BW25113_0269__3prime yagF__3prime 0 280880 281077 1 616 0.12626262626262627 198 25 "CP4-6 prophage; dehydratase family protein" +279930_280111 279930_280111 0 279931 280111 1 683 0.143646408839779 181 26 "279930_280111" +279930_280111__5prime 279930_280111__5prime 0 279733 279930 1 303 0.05555555555555555 198 11 "279930_280111" +279930_280111__3prime 279930_280111__3prime 0 280112 280309 1 629 0.08585858585858586 198 17 "279930_280111" +BW25113_0270 yagG 0 281106 282488 1 6681 0.1301518438177874 1383 180 "CP4-6 prophage; putative sugar transporter" +BW25113_0270__5prime yagG__5prime 0 280908 281105 1 3626 0.20707070707070707 198 41 "CP4-6 prophage; putative sugar transporter" +BW25113_0270__3prime yagG__3prime 0 282489 282686 1 1220 0.1919191919191919 198 38 "CP4-6 prophage; putative sugar transporter" +BW25113_0271 yagH 0 282500 284110 1 5818 0.13531967721911856 1611 218 "CP4-6 prophage; putative xylosidase/arabinosidase" +BW25113_0271__5prime yagH__5prime 0 282302 282499 1 243 0.050505050505050504 198 10 "CP4-6 prophage; putative xylosidase/arabinosidase" +BW25113_0271__3prime yagH__3prime 0 284111 284308 1 868 0.19696969696969696 198 39 "CP4-6 prophage; putative xylosidase/arabinosidase" +BW25113_0272 yagI 0 284115 284873 -1 2781 0.1541501976284585 759 117 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0272__5prime yagI__5prime 0 284874 285071 -1 1111 0.16666666666666666 198 33 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0272__3prime yagI__3prime 0 283917 284114 -1 952 0.14646464646464646 198 29 "CP4-6 prophage; putative DNA-binding transcriptional regulator" +BW25113_0273 argF 0 285012 286016 -1 2643 0.09651741293532339 1005 97 "ornithine carbamoyltransferase 2 and chain F; CP4-6 prophage" +BW25113_0273__5prime argF__5prime 0 286017 286214 -1 154 0.07575757575757576 198 15 "ornithine carbamoyltransferase 2 and chain F; CP4-6 prophage" +BW25113_0273__3prime argF__3prime 0 284814 285011 -1 757 0.1111111111111111 198 22 "ornithine carbamoyltransferase 2 and chain F; CP4-6 prophage" +BW25113_4688 ykgS 0 286140 286344 1 464 0.17560975609756097 205 36 "286139_286344" +BW25113_4688__5prime ykgS__5prime 0 285942 286139 1 297 0.050505050505050504 198 10 "286139_286344" +BW25113_4688__3prime ykgS__3prime 0 286345 286542 1 646 0.21717171717171718 198 43 "286139_286344" +286344_287112 286344_287112 0 286345 287112 -1 2237 0.22916666666666666 768 176 "286344_287112" +286344_287112__5prime 286344_287112__5prime 0 287113 287310 -1 137 0.045454545454545456 198 9 "286344_287112" +286344_287112__3prime 286344_287112__3prime 0 286147 286344 -1 464 0.18181818181818182 198 36 "286344_287112" +BW25113_0274 insB1 0 286360 286863 -1 1599 0.23809523809523808 504 120 "IS1 transposase B" +BW25113_0274__5prime insB1__5prime 0 286864 287061 -1 566 0.23232323232323232 198 46 "IS1 transposase B" +BW25113_0274__3prime insB1__3prime 0 286162 286359 -1 439 0.17676767676767677 198 35 "IS1 transposase B" +BW25113_0275 insA 0 286782 287057 -1 631 0.1956521739130435 276 54 "IS1 repressor TnpA" +BW25113_0275__5prime insA__5prime 0 287058 287255 -1 168 0.08585858585858586 198 17 "IS1 repressor TnpA" +BW25113_0275__3prime insA__3prime 0 286584 286781 -1 595 0.24242424242424243 198 48 "IS1 repressor TnpA" +BW25113_0276 yagJ 0 287115 287942 1 2956 0.1292270531400966 828 107 "287114_287942" +BW25113_0276__5prime yagJ__5prime 0 286917 287114 1 545 0.22727272727272727 198 45 "287114_287942" +BW25113_0276__3prime yagJ__3prime 0 287943 288140 1 1224 0.19696969696969696 198 39 "287114_287942" +BW25113_0277 yagK 0 288033 288659 -1 12026 0.39074960127591707 627 245 "CP4-6 prophage; conserved protein" +BW25113_0277__5prime yagK__5prime 0 288660 288857 -1 13686 0.601010101010101 198 119 "CP4-6 prophage; conserved protein" +BW25113_0277__3prime yagK__3prime 0 287835 288032 -1 525 0.12626262626262627 198 25 "CP4-6 prophage; conserved protein" +BW25113_0278 yagL 0 288931 289629 -1 6949 0.29756795422031473 699 208 "CP4-6 prophage; DNA-binding protein" +BW25113_0278__5prime yagL__5prime 0 289630 289827 -1 2164 0.43434343434343436 198 86 "CP4-6 prophage; DNA-binding protein" +BW25113_0278__3prime yagL__3prime 0 288733 288930 -1 4943 0.5252525252525253 198 104 "CP4-6 prophage; DNA-binding protein" +BW25113_0279 yagM 0 289656 290510 -1 7646 0.25263157894736843 855 216 "CP4-6 prophage; uncharacterized protein" +BW25113_0279__5prime yagM__5prime 0 290511 290708 -1 324 0.08585858585858586 198 17 "CP4-6 prophage; uncharacterized protein" +BW25113_0279__3prime yagM__3prime 0 289458 289655 -1 1037 0.21717171717171718 198 43 "CP4-6 prophage; uncharacterized protein" +BW25113_0280 yagN 0 290850 291290 -1 3221 0.21315192743764172 441 94 "CP4-6 prophage; uncharacterized protein" +BW25113_0280__5prime yagN__5prime 0 291291 291488 -1 596 0.09595959595959595 198 19 "CP4-6 prophage; uncharacterized protein" +BW25113_0280__3prime yagN__3prime 0 290652 290849 -1 1822 0.2676767676767677 198 53 "CP4-6 prophage; uncharacterized protein" +BW25113_0281 intF 0 291407 292807 -1 3367 0.1256245538900785 1401 176 "CP4-6 prophage; putative phage integrase" +BW25113_0281__5prime intF__5prime 0 292808 293005 -1 54 0.025252525252525252 198 5 "CP4-6 prophage; putative phage integrase" +BW25113_0281__3prime intF__3prime 0 291209 291406 -1 754 0.13636363636363635 198 27 "CP4-6 prophage; putative phage integrase" +BW25113_4629 ptwF 0 292917 292965 1 28 0.02040816326530612 49 1 "tRNA-OTHER" +BW25113_4629__5prime ptwF__5prime 0 292719 292916 1 45 0.020202020202020204 198 4 "tRNA-OTHER" +BW25113_4629__3prime ptwF__3prime 0 292966 293163 1 866 0.24242424242424243 198 48 "tRNA-OTHER" +BW25113_4694 yagP 0 293092 293430 -1 915 0.13569321533923304 339 46 "293091_293430" +BW25113_4694__5prime yagP__5prime 0 293431 293628 -1 547 0.17676767676767677 198 35 "293091_293430" +BW25113_4694__3prime yagP__3prime 0 292894 293091 -1 513 0.15656565656565657 198 31 "293091_293430" +BW25113_4695 ykgT 0 293425 293502 -1 148 0.1282051282051282 78 10 "293424_293502" +BW25113_4695__5prime ykgT__5prime 0 293503 293700 -1 607 0.20707070707070707 198 41 "293424_293502" +BW25113_4695__3prime ykgT__3prime 0 293227 293424 -1 459 0.10606060606060606 198 21 "293424_293502" +BW25113_0283 paoD 0 293481 294437 -1 2353 0.10867293625914315 957 104 "moco insertion factor for PaoABC aldehyde oxidoreductase" +BW25113_0283__5prime paoD__5prime 0 294438 294635 -1 963 0.19696969696969696 198 39 "moco insertion factor for PaoABC aldehyde oxidoreductase" +BW25113_0283__3prime paoD__3prime 0 293283 293480 -1 336 0.11616161616161616 198 23 "moco insertion factor for PaoABC aldehyde oxidoreductase" +BW25113_0284 paoC 0 294447 296645 -1 4609 0.09595270577535243 2199 211 "PaoABC aldehyde oxidoreductase and Moco-containing subunit" +BW25113_0284__5prime paoC__5prime 0 296646 296843 -1 1584 0.29797979797979796 198 59 "PaoABC aldehyde oxidoreductase and Moco-containing subunit" +BW25113_0284__3prime paoC__3prime 0 294249 294446 -1 592 0.1111111111111111 198 22 "PaoABC aldehyde oxidoreductase and Moco-containing subunit" +BW25113_0285 paoB 0 296642 297598 -1 3583 0.13166144200626959 957 126 "PaoABC aldehyde oxidoreductase and FAD-containing subunit" +BW25113_0285__5prime paoB__5prime 0 297599 297796 -1 281 0.12626262626262627 198 25 "PaoABC aldehyde oxidoreductase and FAD-containing subunit" +BW25113_0285__3prime paoB__3prime 0 296444 296641 -1 93 0.03535353535353535 198 7 "PaoABC aldehyde oxidoreductase and FAD-containing subunit" +BW25113_0286 paoA 0 297595 298284 -1 2573 0.1608695652173913 690 111 "PaoABC aldehyde oxidoreductase and 2Fe-2S subunit" +BW25113_0286__5prime paoA__5prime 0 298285 298482 -1 1481 0.29797979797979796 198 59 "PaoABC aldehyde oxidoreductase and 2Fe-2S subunit" +BW25113_0286__3prime paoA__3prime 0 297397 297594 -1 438 0.09090909090909091 198 18 "PaoABC aldehyde oxidoreductase and 2Fe-2S subunit" +BW25113_0287 yagU 0 298702 299316 1 13071 0.4894308943089431 615 301 "DUF1440 family inner membrane protein" +BW25113_0287__5prime yagU__5prime 0 298504 298701 1 2110 0.2777777777777778 198 55 "DUF1440 family inner membrane protein" +BW25113_0287__3prime yagU__3prime 0 299317 299514 1 2800 0.35353535353535354 198 70 "DUF1440 family inner membrane protein" +BW25113_0288 ykgJ 0 299564 299893 -1 4884 0.39090909090909093 330 129 "UPF0153 cysteine cluster protein" +BW25113_0288__5prime ykgJ__5prime 0 299894 300091 -1 1463 0.1919191919191919 198 38 "UPF0153 cysteine cluster protein" +BW25113_0288__3prime ykgJ__3prime 0 299366 299563 -1 2799 0.35858585858585856 198 71 "UPF0153 cysteine cluster protein" +BW25113_0289 ecpE 0 300206 300916 -1 2233 0.12376933895921238 711 88 "ECP production pilus chaperone" +BW25113_0289__5prime ecpE__5prime 0 300917 301114 -1 568 0.18181818181818182 198 36 "ECP production pilus chaperone" +BW25113_0289__3prime ecpE__3prime 0 300008 300205 -1 811 0.14646464646464646 198 29 "ECP production pilus chaperone" +BW25113_0290 ecpD 0 300885 302528 -1 4639 0.13138686131386862 1644 216 "polymerized tip adhesin of ECP fibers" +BW25113_0290__5prime ecpD__5prime 0 302529 302726 -1 669 0.12626262626262627 198 25 "polymerized tip adhesin of ECP fibers" +BW25113_0290__3prime ecpD__3prime 0 300687 300884 -1 640 0.12626262626262627 198 25 "polymerized tip adhesin of ECP fibers" +BW25113_0291 ecpC 0 302518 305043 -1 7403 0.1187648456057007 2526 300 "ECP production outer membrane protein" +BW25113_0291__5prime ecpC__5prime 0 305044 305241 -1 506 0.14646464646464646 198 29 "ECP production outer membrane protein" +BW25113_0291__3prime ecpC__3prime 0 302320 302517 -1 468 0.15656565656565657 198 31 "ECP production outer membrane protein" +BW25113_0292 ecpB 0 305069 305737 -1 981 0.10014947683109118 669 67 "ECP production pilus chaperone" +BW25113_0292__5prime ecpB__5prime 0 305738 305935 -1 888 0.18686868686868688 198 37 "ECP production pilus chaperone" +BW25113_0292__3prime ecpB__3prime 0 304871 305068 -1 1007 0.15656565656565657 198 31 "ECP production pilus chaperone" +BW25113_0293 ecpA 0 305795 306382 -1 3819 0.24149659863945577 588 142 "ECP pilin" +BW25113_0293__5prime ecpA__5prime 0 306383 306580 -1 4475 0.3686868686868687 198 73 "ECP pilin" +BW25113_0293__3prime ecpA__3prime 0 305597 305794 -1 116 0.05555555555555555 198 11 "ECP pilin" +BW25113_0294 ecpR 0 306457 307047 -1 6796 0.27749576988155666 591 164 "putative transcriptional regulator for the ecp operon" +BW25113_0294__5prime ecpR__5prime 0 307048 307245 -1 378 0.10101010101010101 198 20 "putative transcriptional regulator for the ecp operon" +BW25113_0294__3prime ecpR__3prime 0 306259 306456 -1 2376 0.42424242424242425 198 84 "putative transcriptional regulator for the ecp operon" +BW25113_0295 ykgL 0 307823 308050 1 1483 0.2236842105263158 228 51 "uncharacterized protein" +BW25113_0295__5prime ykgL__5prime 0 307625 307822 1 1318 0.24242424242424243 198 48 "uncharacterized protein" +BW25113_0295__3prime ykgL__3prime 0 308051 308248 1 302 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_4506 ykgO 0 308085 308225 -1 302 0.09219858156028368 141 13 "RpmJ-like protein" +BW25113_4506__5prime ykgO__5prime 0 308226 308423 -1 735 0.12626262626262627 198 25 "RpmJ-like protein" +BW25113_4506__3prime ykgO__3prime 0 307887 308084 -1 754 0.1414141414141414 198 28 "RpmJ-like protein" +BW25113_0296 ykgM 0 308225 308488 -1 1225 0.1590909090909091 264 42 "50S ribosomal protein L31 type B; alternative L31 utilized during zinc limitation" +BW25113_0296__5prime ykgM__5prime 0 308489 308686 -1 2024 0.32323232323232326 198 64 "50S ribosomal protein L31 type B; alternative L31 utilized during zinc limitation" +BW25113_0296__3prime ykgM__3prime 0 308027 308224 -1 328 0.07575757575757576 198 15 "50S ribosomal protein L31 type B; alternative L31 utilized during zinc limitation" +BW25113_4671 ykgR 0 308852 308953 -1 79 0.029411764705882353 102 3 "uncharacterized protein" +BW25113_4671__5prime ykgR__5prime 0 308954 309151 -1 1632 0.22727272727272727 198 45 "uncharacterized protein" +BW25113_4671__3prime ykgR__3prime 0 308654 308851 -1 1514 0.31313131313131315 198 62 "uncharacterized protein" +BW25113_4630 ykgP 0 309427 309516 -1 71 0.06666666666666667 90 6 "309426_309516" +BW25113_4630__5prime ykgP__5prime 0 309517 309714 -1 1598 0.2676767676767677 198 53 "309426_309516" +BW25113_4630__3prime ykgP__3prime 0 309229 309426 -1 5208 0.4393939393939394 198 87 "309426_309516" +BW25113_0297 eaeH 0 310068 310939 1 11353 0.3256880733944954 872 284 "310067_310939" +BW25113_0297__5prime eaeH__5prime 0 309870 310067 1 507 0.12121212121212122 198 24 "310067_310939" +BW25113_0297__3prime eaeH__3prime 0 310940 311137 1 716 0.20707070707070707 198 41 "310067_310939" +BW25113_0298 insE1 0 311002 311301 1 590 0.17 300 51 "IS3 transposase A" +BW25113_0298__5prime insE1__5prime 0 310804 311001 1 3939 0.3838383838383838 198 76 "IS3 transposase A" +BW25113_0298__3prime insE1__3prime 0 311302 311499 1 521 0.21717171717171718 198 43 "IS3 transposase A" +BW25113_0299 insF1 0 311298 312164 1 4031 0.25836216839677045 867 224 "IS3 transposase B" +BW25113_0299__5prime insF1__5prime 0 311100 311297 1 333 0.16666666666666666 198 33 "IS3 transposase B" +BW25113_0299__3prime insF1__3prime 0 312165 312362 1 2711 0.3888888888888889 198 77 "IS3 transposase B" +BW25113_0300 ykgA 0 312197 312880 -1 5751 0.2573099415204678 684 176 "312196_312880" +BW25113_0300__5prime ykgA__5prime 0 312881 313078 -1 2587 0.3434343434343434 198 68 "312196_312880" +BW25113_0300__3prime ykgA__3prime 0 311999 312196 -1 2084 0.398989898989899 198 79 "312196_312880" +BW25113_4631 ykgQ 0 313150 313278 1 441 0.12403100775193798 129 16 "313149_313278" +BW25113_4631__5prime ykgQ__5prime 0 312952 313149 1 4451 0.3838383838383838 198 76 "313149_313278" +BW25113_4631__3prime ykgQ__3prime 0 313279 313476 1 2274 0.3838383838383838 198 76 "313149_313278" +BW25113_0301 rclC 0 313437 314030 -1 13604 0.4377104377104377 594 260 "reactive chlorine species (RCS) stress resistance inner membrane protein" +BW25113_0301__5prime rclC__5prime 0 314031 314228 -1 1615 0.16666666666666666 198 33 "reactive chlorine species (RCS) stress resistance inner membrane protein" +BW25113_0301__3prime rclC__3prime 0 313239 313436 -1 1708 0.32323232323232326 198 64 "reactive chlorine species (RCS) stress resistance inner membrane protein" +BW25113_0303 rclB 0 314042 314278 -1 1677 0.14767932489451477 237 35 "reactive chlorine species (RCS) stress resistance periplasmic protein" +BW25113_0303__5prime rclB__5prime 0 314279 314476 -1 759 0.10606060606060606 198 21 "reactive chlorine species (RCS) stress resistance periplasmic protein" +BW25113_0303__3prime rclB__3prime 0 313844 314041 -1 5159 0.2828282828282828 198 56 "reactive chlorine species (RCS) stress resistance periplasmic protein" +BW25113_0304 rclA 0 314387 315712 -1 25825 0.36877828054298645 1326 489 "reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family" +BW25113_0304__5prime rclA__5prime 0 315713 315910 -1 261 0.06060606060606061 198 12 "reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family" +BW25113_0304__3prime rclA__3prime 0 314189 314386 -1 123 0.025252525252525252 198 5 "reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family" +315228_316483 315228_316483 0 315229 316483 1 12194 0.26374501992031874 1255 331 "315228_316483" +315228_316483__5prime 315228_316483__5prime 0 315031 315228 1 1621 0.37373737373737376 198 74 "315228_316483" +315228_316483__3prime 315228_316483__3prime 0 316484 316681 1 4034 0.2676767676767677 198 53 "315228_316483" +BW25113_0305 rclR 0 315938 316792 1 10937 0.30994152046783624 855 265 "reactive chlorine species (RCS)-specific activator of the rcl genes" +BW25113_0305__5prime rclR__5prime 0 315740 315937 1 346 0.10606060606060606 198 21 "reactive chlorine species (RCS)-specific activator of the rcl genes" +BW25113_0305__3prime rclR__3prime 0 316793 316990 1 239 0.06060606060606061 198 12 "reactive chlorine species (RCS)-specific activator of the rcl genes" +BW25113_0306 ykgE 0 317319 318038 1 4867 0.19027777777777777 720 137 "cysteine-rich LutA family protein; putative electron transport chain YkgEFG component" +BW25113_0306__5prime ykgE__5prime 0 317121 317318 1 958 0.23737373737373738 198 47 "cysteine-rich LutA family protein; putative electron transport chain YkgEFG component" +BW25113_0306__3prime ykgE__3prime 0 318039 318236 1 353 0.08080808080808081 198 16 "cysteine-rich LutA family protein; putative electron transport chain YkgEFG component" +BW25113_0307 ykgF 0 318049 319476 1 3329 0.09453781512605042 1428 135 "ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component" +BW25113_0307__5prime ykgF__5prime 0 317851 318048 1 503 0.09595959595959595 198 19 "ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component" +BW25113_0307__3prime ykgF__3prime 0 319477 319674 1 555 0.1111111111111111 198 22 "ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component" +BW25113_0308 ykgG 0 319469 320164 1 3649 0.1853448275862069 696 129 "LutC family protein; putative electron transport chain YkgEFG component" +BW25113_0308__5prime ykgG__5prime 0 319271 319468 1 276 0.08080808080808081 198 16 "LutC family protein; putative electron transport chain YkgEFG component" +BW25113_0308__3prime ykgG__3prime 0 320165 320362 1 2484 0.4090909090909091 198 81 "LutC family protein; putative electron transport chain YkgEFG component" +BW25113_0310 ykgH 0 320407 321075 -1 2812 0.16890881913303438 669 113 "putative inner membrane protein" +BW25113_0310__5prime ykgH__5prime 0 321076 321273 -1 3428 0.2676767676767677 198 53 "putative inner membrane protein" +BW25113_0310__3prime ykgH__3prime 0 320209 320406 -1 2939 0.398989898989899 198 79 "putative inner membrane protein" +BW25113_0311 betA 0 321288 322958 -1 4868 0.11430281268701377 1671 191 "choline dehydrogenase and a flavoprotein" +BW25113_0311__5prime betA__5prime 0 322959 323156 -1 685 0.06565656565656566 198 13 "choline dehydrogenase and a flavoprotein" +BW25113_0311__3prime betA__3prime 0 321090 321287 -1 3477 0.2727272727272727 198 54 "choline dehydrogenase and a flavoprotein" +BW25113_0312 betB 0 322972 324444 -1 3734 0.09368635437881874 1473 138 "betaine aldehyde dehydrogenase and NAD-dependent" +BW25113_0312__5prime betB__5prime 0 324445 324642 -1 624 0.11616161616161616 198 23 "betaine aldehyde dehydrogenase and NAD-dependent" +BW25113_0312__3prime betB__3prime 0 322774 322971 -1 579 0.12626262626262627 198 25 "betaine aldehyde dehydrogenase and NAD-dependent" +BW25113_0313 betI 0 324458 325045 -1 2358 0.1445578231292517 588 85 "choline-inducible betIBA-betT divergent operon transcriptional repressor" +BW25113_0313__5prime betI__5prime 0 325046 325243 -1 83 0.050505050505050504 198 10 "choline-inducible betIBA-betT divergent operon transcriptional repressor" +BW25113_0313__3prime betI__3prime 0 324260 324457 -1 360 0.1111111111111111 198 22 "choline-inducible betIBA-betT divergent operon transcriptional repressor" +BW25113_0314 betT 0 325174 327207 1 8028 0.16470009832841692 2034 335 "choline transporter of high affinity" +BW25113_0314__5prime betT__5prime 0 324976 325173 1 189 0.08585858585858586 198 17 "choline transporter of high affinity" +BW25113_0314__3prime betT__3prime 0 327208 327405 1 1114 0.3181818181818182 198 63 "choline transporter of high affinity" +BW25113_0315 yahA 0 328082 329170 1 14400 0.3213957759412305 1089 350 "c-di-GMP-specific phosphodiesterase" +BW25113_0315__5prime yahA__5prime 0 327884 328081 1 5636 0.5303030303030303 198 105 "c-di-GMP-specific phosphodiesterase" +BW25113_0315__3prime yahA__3prime 0 329171 329368 1 1117 0.24242424242424243 198 48 "c-di-GMP-specific phosphodiesterase" +BW25113_0316 yahB 0 329212 330144 -1 5926 0.2240085744908896 933 209 "putative DNA-bindng transcriptional regulator" +BW25113_0316__5prime yahB__5prime 0 330145 330342 -1 438 0.0707070707070707 198 14 "putative DNA-bindng transcriptional regulator" +BW25113_0316__3prime yahB__3prime 0 329014 329211 -1 3679 0.4090909090909091 198 81 "putative DNA-bindng transcriptional regulator" +BW25113_0317 yahC 0 330236 330733 -1 1547 0.13855421686746988 498 69 "putative inner membrane protein" +BW25113_0317__5prime yahC__5prime 0 330734 330931 -1 1881 0.2777777777777778 198 55 "putative inner membrane protein" +BW25113_0317__3prime yahC__3prime 0 330038 330235 -1 905 0.1919191919191919 198 38 "putative inner membrane protein" +BW25113_0318 yahD 0 330991 331596 1 4810 0.2508250825082508 606 152 "ankyrin repeat protein" +BW25113_0318__5prime yahD__5prime 0 330793 330990 1 859 0.15151515151515152 198 30 "ankyrin repeat protein" +BW25113_0318__3prime yahD__3prime 0 331597 331794 1 1434 0.2727272727272727 198 54 "ankyrin repeat protein" +BW25113_0319 yahE 0 331636 332499 1 15658 0.3287037037037037 864 284 "DUF2877 family protein" +BW25113_0319__5prime yahE__5prime 0 331438 331635 1 1609 0.25252525252525254 198 50 "DUF2877 family protein" +BW25113_0319__3prime yahE__3prime 0 332500 332697 1 1801 0.25757575757575757 198 51 "DUF2877 family protein" +BW25113_0320 yahF 0 332489 334036 1 4571 0.10271317829457365 1548 159 "putative NAD(P)-binding succinyl-CoA synthase" +BW25113_0320__5prime yahF__5prime 0 332291 332488 1 6059 0.4444444444444444 198 88 "putative NAD(P)-binding succinyl-CoA synthase" +BW25113_0320__3prime yahF__3prime 0 334037 334234 1 701 0.1717171717171717 198 34 "putative NAD(P)-binding succinyl-CoA synthase" +BW25113_0321 yahG 0 334036 335454 1 3953 0.11205073995771671 1419 159 "DUF1116 family protein" +BW25113_0321__5prime yahG__5prime 0 333838 334035 1 283 0.08080808080808081 198 16 "DUF1116 family protein" +BW25113_0321__3prime yahG__3prime 0 335455 335652 1 350 0.11616161616161616 198 23 "DUF1116 family protein" +335467_335825 335467_335825 0 335468 335825 1 757 0.10893854748603352 358 39 "335467_335825" +335467_335825__5prime 335467_335825__5prime 0 335270 335467 1 536 0.15656565656565657 198 31 "335467_335825" +335467_335825__3prime 335467_335825__3prime 0 335826 336023 1 755 0.19696969696969696 198 39 "335467_335825" +BW25113_0323 yahI 0 335876 336826 1 1311 0.07465825446898001 951 71 "carbamate kinase-like protein" +BW25113_0323__5prime yahI__5prime 0 335678 335875 1 753 0.16666666666666666 198 33 "carbamate kinase-like protein" +BW25113_0323__3prime yahI__3prime 0 336827 337024 1 705 0.15151515151515152 198 30 "carbamate kinase-like protein" +BW25113_0324 yahJ 0 336836 338218 1 3678 0.11785972523499638 1383 163 "putative metallo-dependent hydrolase domain deaminase" +BW25113_0324__5prime yahJ__5prime 0 336638 336835 1 66 0.010101010101010102 198 2 "putative metallo-dependent hydrolase domain deaminase" +BW25113_0324__3prime yahJ__3prime 0 338219 338416 1 600 0.13131313131313133 198 26 "putative metallo-dependent hydrolase domain deaminase" +BW25113_0325 yahK 0 338595 339644 1 4470 0.1761904761904762 1050 185 "aldehyde reductase and NADPH-dependent and Zn-containing and broad specificity" +BW25113_0325__5prime yahK__5prime 0 338397 338594 1 827 0.20707070707070707 198 41 "aldehyde reductase and NADPH-dependent and Zn-containing and broad specificity" +BW25113_0325__3prime yahK__3prime 0 339645 339842 1 1861 0.2727272727272727 198 54 "aldehyde reductase and NADPH-dependent and Zn-containing and broad specificity" +BW25113_0326 yahL 0 339887 340702 1 9246 0.2977941176470588 816 243 "uncharacterized protein" +BW25113_0326__5prime yahL__5prime 0 339689 339886 1 1861 0.2676767676767677 198 53 "uncharacterized protein" +BW25113_0326__3prime yahL__3prime 0 340703 340900 1 2379 0.2222222222222222 198 44 "uncharacterized protein" +BW25113_0327 yahM 0 341115 341360 1 1467 0.23983739837398374 246 59 "uncharacterized protein" +BW25113_0327__5prime yahM__5prime 0 340917 341114 1 393 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_0327__3prime yahM__3prime 0 341361 341558 1 1217 0.2777777777777778 198 55 "uncharacterized protein" +BW25113_0328 yahN 0 341377 342048 -1 4458 0.23809523809523808 672 160 "amino acid exporter for proline and lysine and glutamate and homoserine" +BW25113_0328__5prime yahN__5prime 0 342049 342246 -1 691 0.1717171717171717 198 34 "amino acid exporter for proline and lysine and glutamate and homoserine" +BW25113_0328__3prime yahN__3prime 0 341179 341376 -1 1355 0.25252525252525254 198 50 "amino acid exporter for proline and lysine and glutamate and homoserine" +342165_342797 342165_342797 0 342166 342797 1 2310 0.1360759493670886 632 86 "342165_342797" +342165_342797__5prime 342165_342797__5prime 0 341968 342165 1 1717 0.18686868686868688 198 37 "342165_342797" +342165_342797__3prime 342165_342797__3prime 0 342798 342995 1 417 0.13636363636363635 198 27 "342165_342797" +BW25113_0329 yahO 0 342195 342470 1 1103 0.10869565217391304 276 30 "periplasmic protein and function unknown and YhcN family" +BW25113_0329__5prime yahO__5prime 0 341997 342194 1 542 0.1414141414141414 198 28 "periplasmic protein and function unknown and YhcN family" +BW25113_0329__3prime yahO__3prime 0 342471 342668 1 632 0.1414141414141414 198 28 "periplasmic protein and function unknown and YhcN family" +342534_342564 342534_342564 0 342535 342564 1 111 0.26666666666666666 30 8 "342534_342564" +342534_342564__5prime 342534_342564__5prime 0 342337 342534 1 809 0.1111111111111111 198 22 "342534_342564" +342534_342564__3prime 342534_342564__3prime 0 342565 342762 1 719 0.1414141414141414 198 28 "342534_342564" +BW25113_0330 prpR 0 342568 344154 -1 3038 0.09892879647132956 1587 157 "propionate catabolism operon regulatory protein" +BW25113_0330__5prime prpR__5prime 0 344155 344352 -1 168 0.04040404040404041 198 8 "propionate catabolism operon regulatory protein" +BW25113_0330__3prime prpR__3prime 0 342370 342567 -1 890 0.14646464646464646 198 29 "propionate catabolism operon regulatory protein" +BW25113_0331 prpB 0 344393 345283 1 1544 0.08529741863075196 891 76 "2-methylisocitrate lyase" +BW25113_0331__5prime prpB__5prime 0 344195 344392 1 101 0.03535353535353535 198 7 "2-methylisocitrate lyase" +BW25113_0331__3prime prpB__3prime 0 345284 345481 1 876 0.18686868686868688 198 37 "2-methylisocitrate lyase" +345315_345680 345315_345680 0 345316 345680 1 1215 0.1863013698630137 365 68 "345315_345680" +345315_345680__5prime 345315_345680__5prime 0 345118 345315 1 255 0.07575757575757576 198 15 "345315_345680" +345315_345680__3prime 345315_345680__3prime 0 345681 345878 1 587 0.12121212121212122 198 24 "345315_345680" +BW25113_0333 prpC 0 345723 346892 1 2805 0.08632478632478632 1170 101 "2-methylcitrate synthase" +BW25113_0333__5prime prpC__5prime 0 345525 345722 1 400 0.16666666666666666 198 33 "2-methylcitrate synthase" +BW25113_0333__3prime prpC__3prime 0 346893 347090 1 599 0.13131313131313133 198 26 "2-methylcitrate synthase" +BW25113_0334 prpD 0 346926 348377 1 2445 0.09297520661157024 1452 135 "2-methylcitrate dehydratase" +BW25113_0334__5prime prpD__5prime 0 346728 346925 1 419 0.07575757575757576 198 15 "2-methylcitrate dehydratase" +BW25113_0334__3prime prpD__3prime 0 348378 348575 1 939 0.13636363636363635 198 27 "2-methylcitrate dehydratase" +BW25113_0335 prpE 0 348417 350303 1 4432 0.09432962374138845 1887 178 "propionate--CoA ligase" +BW25113_0335__5prime prpE__5prime 0 348219 348416 1 353 0.09595959595959595 198 19 "propionate--CoA ligase" +BW25113_0335__3prime prpE__3prime 0 350304 350501 1 558 0.09090909090909091 198 18 "propionate--CoA ligase" +350309_350480 350309_350480 0 350310 350480 1 319 0.0935672514619883 171 16 "350309_350480" +350309_350480__5prime 350309_350480__5prime 0 350112 350309 1 276 0.050505050505050504 198 10 "350309_350480" +350309_350480__3prime 350309_350480__3prime 0 350481 350678 1 282 0.030303030303030304 198 6 "350309_350480" +BW25113_0336 codB 0 350633 351892 1 3505 0.0992063492063492 1260 125 "cytosine transporter" +BW25113_0336__5prime codB__5prime 0 350435 350632 1 456 0.07575757575757576 198 15 "cytosine transporter" +BW25113_0336__3prime codB__3prime 0 351893 352090 1 365 0.07575757575757576 198 15 "cytosine transporter" +BW25113_0337 codA 0 351882 353165 1 3611 0.1043613707165109 1284 134 "cytosine/isoguanine deaminase" +BW25113_0337__5prime codA__5prime 0 351684 351881 1 851 0.1414141414141414 198 28 "cytosine/isoguanine deaminase" +BW25113_0337__3prime codA__3prime 0 353166 353363 1 781 0.15656565656565657 198 31 "cytosine/isoguanine deaminase" +353194_353273 353194_353273 0 353195 353273 1 429 0.22784810126582278 79 18 "353194_353273" +353194_353273__5prime 353194_353273__5prime 0 352997 353194 1 887 0.15656565656565657 198 31 "353194_353273" +353194_353273__3prime 353194_353273__3prime 0 353274 353471 1 729 0.14646464646464646 198 29 "353194_353273" +353394_353473 353394_353473 0 353395 353473 1 502 0.26582278481012656 79 21 "353394_353473" +353394_353473__5prime 353394_353473__5prime 0 353197 353394 1 656 0.13131313131313133 198 26 "353394_353473" +353394_353473__3prime 353394_353473__3prime 0 353474 353671 1 373 0.11616161616161616 198 23 "353394_353473" +BW25113_0338 cynR 0 353502 354401 -1 1642 0.07888888888888888 900 71 "transcriptional activator of cyn operon; autorepressor" +BW25113_0338__5prime cynR__5prime 0 354402 354599 -1 130 0.0707070707070707 198 14 "transcriptional activator of cyn operon; autorepressor" +BW25113_0338__3prime cynR__3prime 0 353304 353501 -1 783 0.16666666666666666 198 33 "transcriptional activator of cyn operon; autorepressor" +BW25113_0339 cynT 0 354510 355169 1 1526 0.12272727272727273 660 81 "carbonic anhydrase" +BW25113_0339__5prime cynT__5prime 0 354312 354509 1 260 0.05555555555555555 198 11 "carbonic anhydrase" +BW25113_0339__3prime cynT__3prime 0 355170 355367 1 91 0.04040404040404041 198 8 "carbonic anhydrase" +BW25113_0340 cynS 0 355200 355670 1 702 0.07643312101910828 471 36 "cyanate aminohydrolase" +BW25113_0340__5prime cynS__5prime 0 355002 355199 1 240 0.09090909090909091 198 18 "cyanate aminohydrolase" +BW25113_0340__3prime cynS__3prime 0 355671 355868 1 428 0.11616161616161616 198 23 "cyanate aminohydrolase" +BW25113_0341 cynX 0 355703 356857 1 3559 0.15584415584415584 1155 180 "putative cyanate transporter" +BW25113_0341__5prime cynX__5prime 0 355505 355702 1 337 0.06060606060606061 198 12 "putative cyanate transporter" +BW25113_0341__3prime cynX__3prime 0 356858 357055 1 869 0.18181818181818182 198 36 "putative cyanate transporter" +356918_356947 356918_356947 0 356919 356947 1 451 0.41379310344827586 29 12 "356918_356947" +356918_356947__5prime 356918_356947__5prime 0 356721 356918 1 1033 0.25252525252525254 198 50 "356918_356947" +356918_356947__3prime 356918_356947__3prime 0 356948 357145 1 688 0.15151515151515152 198 30 "356918_356947" +BW25113_0342 lacA 0 356960 357571 -1 10517 0.3235294117647059 612 198 "thiogalactoside acetyltransferase" +BW25113_0342__5prime lacA__5prime 0 357572 357769 -1 3323 0.4494949494949495 198 89 "thiogalactoside acetyltransferase" +BW25113_0342__3prime lacA__3prime 0 356762 356959 -1 1422 0.30808080808080807 198 61 "thiogalactoside acetyltransferase" +357593_357627 357593_357627 0 357594 357627 1 265 0.47058823529411764 34 16 "357593_357627" +357593_357627__5prime 357593_357627__5prime 0 357396 357593 1 2499 0.35858585858585856 198 71 "357593_357627" +357593_357627__3prime 357593_357627__3prime 0 357628 357825 1 2921 0.4090909090909091 198 81 "357593_357627" +BW25113_0343 lacY 0 357637 358890 -1 14093 0.34768740031897927 1254 436 "lactose permease" +BW25113_0343__5prime lacY__5prime 0 358891 359088 -1 2254 0.30303030303030304 198 60 "lactose permease" +BW25113_0343__3prime lacY__3prime 0 357439 357636 -1 2334 0.42424242424242425 198 84 "lactose permease" +BW25113_0344 lacZ 0 358942 360066 -1 4072 0.16266666666666665 1125 183 "358941_360066" +BW25113_0344__5prime lacZ__5prime 0 360067 360264 -1 887 0.18686868686868688 198 37 "358941_360066" +BW25113_0344__3prime lacZ__3prime 0 358744 358941 -1 1685 0.1717171717171717 198 34 "358941_360066" +360066_360651 360066_360651 0 360067 360651 1 1756 0.13504273504273503 585 79 "360066_360651" +360066_360651__5prime 360066_360651__5prime 0 359869 360066 1 721 0.21212121212121213 198 42 "360066_360651" +360066_360651__3prime 360066_360651__3prime 0 360652 360849 1 306 0.09595959595959595 198 19 "360066_360651" +BW25113_0345 lacI 0 360661 361743 -1 2610 0.1172668513388735 1083 127 "DNA-binding transcriptional repressor" +BW25113_0345__5prime lacI__5prime 0 361744 361941 -1 687 0.12121212121212122 198 24 "DNA-binding transcriptional repressor" +BW25113_0345__3prime lacI__3prime 0 360463 360660 -1 685 0.15656565656565657 198 31 "DNA-binding transcriptional repressor" +360751_360752 360751_360752 0 360752 360752 1 0 0.0 1 0 "360751_360752" +360751_360752__5prime 360751_360752__5prime 0 360554 360751 1 587 0.13636363636363635 198 27 "360751_360752" +360751_360752__3prime 360751_360752__3prime 0 360753 360950 1 472 0.12626262626262627 198 25 "360751_360752" +BW25113_0346 mhpR 0 361820 362653 -1 2000 0.1091127098321343 834 91 "mhp operon transcriptional activator" +BW25113_0346__5prime mhpR__5prime 0 362654 362851 -1 538 0.07575757575757576 198 15 "mhp operon transcriptional activator" +BW25113_0346__3prime mhpR__3prime 0 361622 361819 -1 844 0.15151515151515152 198 30 "mhp operon transcriptional activator" +BW25113_0347 mhpA 0 362844 364508 1 4202 0.1045045045045045 1665 174 "3-(3-hydroxyphenyl)propionate hydroxylase" +BW25113_0347__5prime mhpA__5prime 0 362646 362843 1 456 0.0707070707070707 198 14 "3-(3-hydroxyphenyl)propionate hydroxylase" +BW25113_0347__3prime mhpA__3prime 0 364509 364706 1 350 0.1111111111111111 198 22 "3-(3-hydroxyphenyl)propionate hydroxylase" +BW25113_0348 mhpB 0 364510 365454 1 1931 0.11216931216931217 945 106 "2 and 3-dihydroxyphenylpropionate 1 and 2-dioxygenase" +BW25113_0348__5prime mhpB__5prime 0 364312 364509 1 634 0.08080808080808081 198 16 "2 and 3-dihydroxyphenylpropionate 1 and 2-dioxygenase" +BW25113_0348__3prime mhpB__3prime 0 365455 365652 1 286 0.06060606060606061 198 12 "2 and 3-dihydroxyphenylpropionate 1 and 2-dioxygenase" +BW25113_0349 mhpC 0 365457 367561 1 5266 0.14726840855106887 2105 310 "365456_367561" +BW25113_0349__5prime mhpC__5prime 0 365259 365456 1 215 0.045454545454545456 198 9 "365456_367561" +BW25113_0349__3prime mhpC__3prime 0 367562 367759 1 1043 0.12121212121212122 198 24 "365456_367561" +365990_367213 365990_367213 0 365991 367213 1 3947 0.19623875715453803 1223 240 "365990_367213" +365990_367213__5prime 365990_367213__5prime 0 365793 365990 1 392 0.11616161616161616 198 23 "365990_367213" +365990_367213__3prime 365990_367213__3prime 0 367214 367411 1 63 0.020202020202020204 198 4 "365990_367213" +BW25113_0350 mhpD 0 367571 368380 1 2053 0.0962962962962963 810 78 "2-keto-4-pentenoate hydratase" +BW25113_0350__5prime mhpD__5prime 0 367373 367570 1 425 0.1111111111111111 198 22 "2-keto-4-pentenoate hydratase" +BW25113_0350__3prime mhpD__3prime 0 368381 368578 1 777 0.19696969696969696 198 39 "2-keto-4-pentenoate hydratase" +BW25113_0351 mhpF 0 368377 369327 1 2278 0.12933753943217666 951 123 "acetaldehyde-CoA dehydrogenase II and NAD-binding" +BW25113_0351__5prime mhpF__5prime 0 368179 368376 1 411 0.11616161616161616 198 23 "acetaldehyde-CoA dehydrogenase II and NAD-binding" +BW25113_0351__3prime mhpF__3prime 0 369328 369525 1 452 0.12626262626262627 198 25 "acetaldehyde-CoA dehydrogenase II and NAD-binding" +BW25113_0352 mhpE 0 369324 370337 1 2221 0.10848126232741617 1014 110 "4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase and class I" +BW25113_0352__5prime mhpE__5prime 0 369126 369323 1 366 0.10606060606060606 198 21 "4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase and class I" +BW25113_0352__3prime mhpE__3prime 0 370338 370535 1 588 0.12121212121212122 198 24 "4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase and class I" +370385_370821 370385_370821 0 370386 370821 1 1026 0.0871559633027523 436 38 "370385_370821" +370385_370821__5prime 370385_370821__5prime 0 370188 370385 1 594 0.12121212121212122 198 24 "370385_370821" +370385_370821__3prime 370385_370821__3prime 0 370822 371019 1 308 0.09595959595959595 198 19 "370385_370821" +BW25113_0353 mhpT 0 370915 372126 1 2823 0.09818481848184818 1212 119 "3-hydroxyphenylpropionic transporter" +BW25113_0353__5prime mhpT__5prime 0 370717 370914 1 371 0.030303030303030304 198 6 "3-hydroxyphenylpropionic transporter" +BW25113_0353__3prime mhpT__3prime 0 372127 372324 1 346 0.12626262626262627 198 25 "3-hydroxyphenylpropionic transporter" +BW25113_0354 yaiL 0 372228 372767 1 2814 0.1388888888888889 540 75 "DUF2058 family protein" +BW25113_0354__5prime yaiL__5prime 0 372030 372227 1 588 0.1414141414141414 198 28 "DUF2058 family protein" +BW25113_0354__3prime yaiL__3prime 0 372768 372965 1 526 0.11616161616161616 198 23 "DUF2058 family protein" +372790_372977 372790_372977 0 372791 372977 1 671 0.13903743315508021 187 26 "372790_372977" +372790_372977__5prime 372790_372977__5prime 0 372593 372790 1 2296 0.1919191919191919 198 38 "372790_372977" +372790_372977__3prime 372790_372977__3prime 0 372978 373175 1 416 0.10101010101010101 198 20 "372790_372977" +BW25113_0355 frmB 0 372991 373824 -1 1995 0.09592326139088729 834 80 "S-formylglutathione hydrolase" +BW25113_0355__5prime frmB__5prime 0 373825 374022 -1 795 0.10606060606060606 198 21 "S-formylglutathione hydrolase" +BW25113_0355__3prime frmB__3prime 0 372793 372990 -1 676 0.13636363636363635 198 27 "S-formylglutathione hydrolase" +BW25113_0356 frmA 0 373918 375027 -1 2845 0.10990990990990991 1110 122 "alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase" +BW25113_0356__5prime frmA__5prime 0 375028 375225 -1 575 0.12626262626262627 198 25 "alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase" +BW25113_0356__3prime frmA__3prime 0 373720 373917 -1 609 0.09090909090909091 198 18 "alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase" +BW25113_0357 frmR 0 375062 375337 -1 820 0.14492753623188406 276 40 "regulator protein that represses frmRAB operon" +BW25113_0357__5prime frmR__5prime 0 375338 375535 -1 40 0.020202020202020204 198 4 "regulator protein that represses frmRAB operon" +BW25113_0357__3prime frmR__3prime 0 374864 375061 -1 617 0.09595959595959595 198 19 "regulator protein that represses frmRAB operon" +BW25113_0358 yaiO 0 375525 376298 -1 6984 0.27002583979328165 774 209 "outer membrane protein" +BW25113_0358__5prime yaiO__5prime 0 376299 376496 -1 1237 0.2676767676767677 198 53 "outer membrane protein" +BW25113_0358__3prime yaiO__3prime 0 375327 375524 -1 96 0.030303030303030304 198 6 "outer membrane protein" +BW25113_4579 yaiX 0 376300 378328 -1 12997 0.2725480532281912 2029 553 "376299_378328" +BW25113_4579__5prime yaiX__5prime 0 378329 378526 -1 2885 0.40404040404040403 198 80 "376299_378328" +BW25113_4579__3prime yaiX__3prime 0 376102 376299 -1 1926 0.26262626262626265 198 52 "376299_378328" +BW25113_0360 insC1 0 376807 377172 1 1727 0.28688524590163933 366 105 "IS2 repressor TnpA" +BW25113_0360__5prime insC1__5prime 0 376609 376806 1 650 0.18181818181818182 198 36 "IS2 repressor TnpA" +BW25113_0360__3prime insC1__3prime 0 377173 377370 1 437 0.1919191919191919 198 38 "IS2 repressor TnpA" +BW25113_0361 insD1 0 377130 378035 1 3509 0.24172185430463577 906 219 "IS2 transposase TnpB" +BW25113_0361__5prime insD1__5prime 0 376932 377129 1 354 0.16666666666666666 198 33 "IS2 transposase TnpB" +BW25113_0361__3prime insD1__3prime 0 378036 378233 1 2405 0.3181818181818182 198 63 "IS2 transposase TnpB" +BW25113_0363 yaiP 0 378195 379391 -1 13377 0.3408521303258145 1197 408 "putative family 2 glycosyltransferase" +BW25113_0363__5prime yaiP__5prime 0 379392 379589 -1 1167 0.1919191919191919 198 38 "putative family 2 glycosyltransferase" +BW25113_0363__3prime yaiP__3prime 0 377997 378194 -1 2759 0.398989898989899 198 79 "putative family 2 glycosyltransferase" +BW25113_0364 yaiS 0 379515 380072 -1 7671 0.33154121863799285 558 185 "putative PIG-L family deacetylase" +BW25113_0364__5prime yaiS__5prime 0 380073 380270 -1 577 0.15656565656565657 198 31 "putative PIG-L family deacetylase" +BW25113_0364__3prime yaiS__3prime 0 379317 379514 -1 2510 0.3333333333333333 198 66 "putative PIG-L family deacetylase" +BW25113_0365 tauA 0 380688 381650 1 2259 0.11214953271028037 963 108 "taurine transporter subunit" +BW25113_0365__5prime tauA__5prime 0 380490 380687 1 682 0.15151515151515152 198 30 "taurine transporter subunit" +BW25113_0365__3prime tauA__3prime 0 381651 381848 1 109 0.025252525252525252 198 5 "taurine transporter subunit" +381259_382590 381259_382590 0 381260 382590 1 1816 0.06536438767843726 1331 87 "381259_382590" +381259_382590__5prime 381259_382590__5prime 0 381062 381259 1 369 0.10606060606060606 198 21 "381259_382590" +381259_382590__3prime 381259_382590__3prime 0 382591 382788 1 273 0.08080808080808081 198 16 "381259_382590" +BW25113_0366 tauB 0 381663 382430 1 768 0.06510416666666667 768 50 "taurine transporter subunit" +BW25113_0366__5prime tauB__5prime 0 381465 381662 1 236 0.09090909090909091 198 18 "taurine transporter subunit" +BW25113_0366__3prime tauB__3prime 0 382431 382628 1 634 0.07575757575757576 198 15 "taurine transporter subunit" +BW25113_0367 tauC 0 382427 383254 1 1561 0.07729468599033816 828 64 "taurine transporter subunit" +BW25113_0367__5prime tauC__5prime 0 382229 382426 1 138 0.045454545454545456 198 9 "taurine transporter subunit" +BW25113_0367__3prime tauC__3prime 0 383255 383452 1 530 0.1414141414141414 198 28 "taurine transporter subunit" +BW25113_0368 tauD 0 383251 384102 1 1977 0.09859154929577464 852 84 "taurine dioxygenase and 2-oxoglutarate-dependent" +BW25113_0368__5prime tauD__5prime 0 383053 383250 1 387 0.0707070707070707 198 14 "taurine dioxygenase and 2-oxoglutarate-dependent" +BW25113_0368__3prime tauD__3prime 0 384103 384300 1 774 0.1111111111111111 198 22 "taurine dioxygenase and 2-oxoglutarate-dependent" +BW25113_0369 hemB 0 384209 385183 -1 416 0.012307692307692308 975 12 "5-aminolevulinate dehydratase (porphobilinogen synthase)" +BW25113_0369__5prime hemB__5prime 0 385184 385381 -1 2199 0.23232323232323232 198 46 "5-aminolevulinate dehydratase (porphobilinogen synthase)" +BW25113_0369__3prime hemB__3prime 0 384011 384208 -1 760 0.13636363636363635 198 27 "5-aminolevulinate dehydratase (porphobilinogen synthase)" +BW25113_4580 yaiT 0 385707 389874 1 55275 0.29822456813819576 4168 1243 "385706_389874" +BW25113_4580__5prime yaiT__5prime 0 385509 385706 1 973 0.15656565656565657 198 31 "385706_389874" +BW25113_4580__3prime yaiT__3prime 0 389875 390072 1 1428 0.23232323232323232 198 46 "385706_389874" +387164_388422 387164_388422 0 387165 388422 -1 5153 0.21860095389507153 1258 275 "387164_388422" +387164_388422__5prime 387164_388422__5prime 0 388423 388620 -1 784 0.16666666666666666 198 33 "387164_388422" +387164_388422__3prime 387164_388422__3prime 0 386967 387164 -1 2342 0.3333333333333333 198 66 "387164_388422" +BW25113_0372 insF1 0 387195 388061 -1 4136 0.24567474048442905 867 213 "IS3 transposase B" +BW25113_0372__5prime insF1__5prime 0 388062 388259 -1 288 0.12121212121212122 198 24 "IS3 transposase B" +BW25113_0372__3prime insF1__3prime 0 386997 387194 -1 2160 0.36363636363636365 198 72 "IS3 transposase B" +BW25113_0373 insE1 0 388058 388357 -1 593 0.13 300 39 "IS3 transposase A" +BW25113_0373__5prime insE1__5prime 0 388358 388555 -1 625 0.1414141414141414 198 28 "IS3 transposase A" +BW25113_0373__3prime insE1__3prime 0 387860 388057 -1 595 0.1919191919191919 198 38 "IS3 transposase A" +BW25113_0375 yaiV 0 389962 390585 1 4875 0.2516025641025641 624 157 "putative transcriptional regulator" +BW25113_0375__5prime yaiV__5prime 0 389764 389961 1 7323 0.398989898989899 198 79 "putative transcriptional regulator" +BW25113_0375__3prime yaiV__3prime 0 390586 390783 1 2918 0.36363636363636365 198 72 "putative transcriptional regulator" +BW25113_0376 ampH 0 390586 391743 -1 8362 0.21502590673575128 1158 249 "D-alanyl-D-alanine-carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase" +BW25113_0376__5prime ampH__5prime 0 391744 391941 -1 872 0.15656565656565657 198 31 "D-alanyl-D-alanine-carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase" +BW25113_0376__3prime ampH__3prime 0 390388 390585 -1 2552 0.3484848484848485 198 69 "D-alanyl-D-alanine-carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase" +BW25113_0377 sbmA 0 392095 393315 1 3794 0.13022113022113022 1221 159 "microcin B17 transporter" +BW25113_0377__5prime sbmA__5prime 0 391897 392094 1 522 0.1414141414141414 198 28 "microcin B17 transporter" +BW25113_0377__3prime sbmA__3prime 0 393316 393513 1 492 0.09090909090909091 198 18 "microcin B17 transporter" +BW25113_0378 yaiW 0 393328 394422 1 2519 0.1050228310502283 1095 115 "putative lipoprotein" +BW25113_0378__5prime yaiW__5prime 0 393130 393327 1 630 0.17676767676767677 198 35 "putative lipoprotein" +BW25113_0378__3prime yaiW__3prime 0 394423 394620 1 307 0.06060606060606061 198 12 "putative lipoprotein" +394435_394470 394435_394470 0 394436 394470 1 21 0.02857142857142857 35 1 "394435_394470" +394435_394470__5prime 394435_394470__5prime 0 394238 394435 1 451 0.12626262626262627 198 25 "394435_394470" +394435_394470__3prime 394435_394470__3prime 0 394471 394668 1 301 0.08080808080808081 198 16 "394435_394470" +BW25113_0379 yaiY 0 394481 394789 -1 362 0.06796116504854369 309 21 "DUF2755 family inner membrane protein" +BW25113_0379__5prime yaiY__5prime 0 394790 394987 -1 248 0.0707070707070707 198 14 "DUF2755 family inner membrane protein" +BW25113_0379__3prime yaiY__3prime 0 394283 394480 -1 538 0.11616161616161616 198 23 "DUF2755 family inner membrane protein" +BW25113_0380 yaiZ 0 395049 395261 1 537 0.107981220657277 213 23 "DUF2754 family putative inner membrane protein" +BW25113_0380__5prime yaiZ__5prime 0 394851 395048 1 232 0.07575757575757576 198 15 "DUF2754 family putative inner membrane protein" +BW25113_0380__3prime yaiZ__3prime 0 395262 395459 1 685 0.09090909090909091 198 18 "DUF2754 family putative inner membrane protein" +BW25113_0381 ddlA 0 395285 396379 -1 3073 0.11598173515981736 1095 127 "D-alanine-D-alanine ligase A" +BW25113_0381__5prime ddlA__5prime 0 396380 396577 -1 701 0.16666666666666666 198 33 "D-alanine-D-alanine ligase A" +BW25113_0381__3prime ddlA__3prime 0 395087 395284 -1 468 0.09090909090909091 198 18 "D-alanine-D-alanine ligase A" +BW25113_0382 iraP 0 396842 397102 1 6998 0.42911877394636017 261 112 "anti-RssB factor and RpoS stabilzer during Pi starvation; anti-adapter protein" +BW25113_0382__5prime iraP__5prime 0 396644 396841 1 486 0.12121212121212122 198 24 "anti-RssB factor and RpoS stabilzer during Pi starvation; anti-adapter protein" +BW25113_0382__3prime iraP__3prime 0 397103 397300 1 2317 0.26262626262626265 198 52 "anti-RssB factor and RpoS stabilzer during Pi starvation; anti-adapter protein" +BW25113_0383 phoA 0 397203 398618 1 7714 0.19138418079096045 1416 271 "bacterial alkaline phosphatase" +BW25113_0383__5prime phoA__5prime 0 397005 397202 1 2114 0.2474747474747475 198 49 "bacterial alkaline phosphatase" +BW25113_0383__3prime phoA__3prime 0 398619 398816 1 327 0.0707070707070707 198 14 "bacterial alkaline phosphatase" +BW25113_0384 psiF 0 398737 399057 1 1208 0.16510903426791276 321 53 "PsiF family protein" +BW25113_0384__5prime psiF__5prime 0 398539 398736 1 577 0.09090909090909091 198 18 "PsiF family protein" +BW25113_0384__3prime psiF__3prime 0 399058 399255 1 412 0.09595959595959595 198 19 "PsiF family protein" +BW25113_0385 yaiC 0 399159 400274 1 2733 0.10304659498207885 1116 115 "diguanylate cyclase and cellulose regualtor" +BW25113_0385__5prime yaiC__5prime 0 398961 399158 1 587 0.09595959595959595 198 19 "diguanylate cyclase and cellulose regualtor" +BW25113_0385__3prime yaiC__3prime 0 400275 400472 1 582 0.1111111111111111 198 22 "diguanylate cyclase and cellulose regualtor" +BW25113_0386 proC 0 400291 401100 -1 1636 0.08518518518518518 810 69 "pyrroline-5-carboxylate reductase and NAD(P)-binding" +BW25113_0386__5prime proC__5prime 0 401101 401298 -1 297 0.10606060606060606 198 21 "pyrroline-5-carboxylate reductase and NAD(P)-binding" +BW25113_0386__3prime proC__3prime 0 400093 400290 -1 233 0.10101010101010101 198 20 "pyrroline-5-carboxylate reductase and NAD(P)-binding" +BW25113_0387 yaiI 0 401220 401678 1 640 0.08496732026143791 459 39 "UPF0178 family protein" +BW25113_0387__5prime yaiI__5prime 0 401022 401219 1 236 0.07575757575757576 198 15 "UPF0178 family protein" +BW25113_0387__3prime yaiI__3prime 0 401679 401876 1 70 0.020202020202020204 198 4 "UPF0178 family protein" +BW25113_0388 aroL 0 401861 402385 1 975 0.06857142857142857 525 36 "shikimate kinase II" +BW25113_0388__5prime aroL__5prime 0 401663 401860 1 40 0.010101010101010102 198 2 "shikimate kinase II" +BW25113_0388__3prime aroL__3prime 0 402386 402583 1 976 0.1919191919191919 198 38 "shikimate kinase II" +BW25113_0389 yaiA 0 402435 402626 1 1207 0.203125 192 39 "OxyR-regulated conserved protein" +BW25113_0389__5prime yaiA__5prime 0 402237 402434 1 542 0.08080808080808081 198 16 "OxyR-regulated conserved protein" +BW25113_0389__3prime yaiA__3prime 0 402627 402824 1 905 0.16666666666666666 198 33 "OxyR-regulated conserved protein" +BW25113_0390 aroM 0 402884 403561 1 1988 0.15634218289085547 678 106 "AroM family protein" +BW25113_0390__5prime aroM__5prime 0 402686 402883 1 614 0.15656565656565657 198 31 "AroM family protein" +BW25113_0390__3prime aroM__3prime 0 403562 403759 1 997 0.22727272727272727 198 45 "AroM family protein" +BW25113_0391 yaiE 0 403633 403917 1 5204 0.3298245614035088 285 94 "UPF0345 family protein" +BW25113_0391__5prime yaiE__5prime 0 403435 403632 1 757 0.16666666666666666 198 33 "UPF0345 family protein" +BW25113_0391__3prime yaiE__3prime 0 403918 404115 1 468 0.12626262626262627 198 25 "UPF0345 family protein" +BW25113_0392 ykiA 0 404065 404406 1 5418 0.4298245614035088 342 147 "404064_404406" +BW25113_0392__5prime ykiA__5prime 0 403867 404064 1 3313 0.15656565656565657 198 31 "404064_404406" +BW25113_0392__3prime ykiA__3prime 0 404407 404604 1 1492 0.21212121212121213 198 42 "404064_404406" +404507_404544 404507_404544 0 404508 404544 1 728 0.24324324324324326 37 9 "404507_404544" +404507_404544__5prime 404507_404544__5prime 0 404310 404507 1 1042 0.2474747474747475 198 49 "404507_404544" +404507_404544__3prime 404507_404544__3prime 0 404545 404742 1 568 0.1111111111111111 198 22 "404507_404544" +BW25113_0393 rdgC 0 404564 405475 -1 3160 0.13157894736842105 912 120 "nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function" +BW25113_0393__5prime rdgC__5prime 0 405476 405673 -1 797 0.17676767676767677 198 35 "nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function" +BW25113_0393__3prime rdgC__3prime 0 404366 404563 -1 1505 0.22727272727272727 198 45 "nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function" +BW25113_0394 mak 0 405600 406508 1 2051 0.11661166116611661 909 106 "manno(fructo)kinase" +BW25113_0394__5prime mak__5prime 0 405402 405599 1 511 0.11616161616161616 198 23 "manno(fructo)kinase" +BW25113_0394__3prime mak__3prime 0 406509 406706 1 460 0.12121212121212122 198 24 "manno(fructo)kinase" +406533_406724 406533_406724 0 406534 406724 1 435 0.1099476439790576 191 21 "406533_406724" +406533_406724__5prime 406533_406724__5prime 0 406336 406533 1 556 0.11616161616161616 198 23 "406533_406724" +406533_406724__3prime 406533_406724__3prime 0 406725 406922 1 2705 0.42424242424242425 198 84 "406533_406724" +BW25113_0396 araJ 0 406753 407937 -1 12492 0.24050632911392406 1185 285 "arabinose-inducible putative transporter and MFS family" +BW25113_0396__5prime araJ__5prime 0 407938 408135 -1 294 0.06565656565656566 198 13 "arabinose-inducible putative transporter and MFS family" +BW25113_0396__3prime araJ__3prime 0 406555 406752 -1 736 0.15151515151515152 198 30 "arabinose-inducible putative transporter and MFS family" +BW25113_0397 sbcC 0 408063 411209 -1 7870 0.11471242453129965 3147 361 "exonuclease and dsDNA and ATP-dependent" +BW25113_0397__5prime sbcC__5prime 0 411210 411407 -1 403 0.08585858585858586 198 17 "exonuclease and dsDNA and ATP-dependent" +BW25113_0397__3prime sbcC__3prime 0 407865 408062 -1 288 0.05555555555555555 198 11 "exonuclease and dsDNA and ATP-dependent" +BW25113_0398 sbcD 0 411206 412408 -1 3361 0.10723192019950124 1203 129 "exonuclease and dsDNA and ATP-dependent" +BW25113_0398__5prime sbcD__5prime 0 412409 412606 -1 263 0.09595959595959595 198 19 "exonuclease and dsDNA and ATP-dependent" +BW25113_0398__3prime sbcD__3prime 0 411008 411205 -1 339 0.09595959595959595 198 19 "exonuclease and dsDNA and ATP-dependent" +BW25113_0399 phoB 0 412598 413287 1 2682 0.1318840579710145 690 91 "response regulator in two-component regulatory system with PhoR (or CreC)" +BW25113_0399__5prime phoB__5prime 0 412400 412597 1 321 0.12121212121212122 198 24 "response regulator in two-component regulatory system with PhoR (or CreC)" +BW25113_0399__3prime phoB__3prime 0 413288 413485 1 402 0.05555555555555555 198 11 "response regulator in two-component regulatory system with PhoR (or CreC)" +BW25113_0400 phoR 0 413345 414640 1 3591 0.10030864197530864 1296 130 "sensory histidine kinase in two-component regulatory system with PhoB" +BW25113_0400__5prime phoR__5prime 0 413147 413344 1 949 0.12121212121212122 198 24 "sensory histidine kinase in two-component regulatory system with PhoB" +BW25113_0400__3prime phoR__3prime 0 414641 414838 1 215 0.06565656565656566 198 13 "sensory histidine kinase in two-component regulatory system with PhoB" +BW25113_0401 brnQ 0 415047 416366 1 5150 0.1409090909090909 1320 186 "branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile and Leu and and Val" +BW25113_0401__5prime brnQ__5prime 0 414849 415046 1 245 0.08080808080808081 198 16 "branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile and Leu and and Val" +BW25113_0401__3prime brnQ__3prime 0 416367 416564 1 760 0.12121212121212122 198 24 "branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile and Leu and and Val" +BW25113_0402 proY 0 416442 417815 1 3912 0.09534206695778748 1374 131 "proline-specific permease" +BW25113_0402__5prime proY__5prime 0 416244 416441 1 1086 0.17676767676767677 198 35 "proline-specific permease" +BW25113_0402__3prime proY__3prime 0 417816 418013 1 519 0.1111111111111111 198 22 "proline-specific permease" +417827_417860 417827_417860 0 417828 417860 1 71 0.09090909090909091 33 3 "417827_417860" +417827_417860__5prime 417827_417860__5prime 0 417630 417827 1 310 0.06060606060606061 198 12 "417827_417860" +417827_417860__3prime 417827_417860__3prime 0 417861 418058 1 555 0.12626262626262627 198 25 "417827_417860" +BW25113_0403 malZ 0 417974 419788 1 4303 0.11129476584022038 1815 202 "maltodextrin glucosidase" +BW25113_0403__5prime malZ__5prime 0 417776 417973 1 320 0.0707070707070707 198 14 "maltodextrin glucosidase" +BW25113_0403__3prime malZ__3prime 0 419789 419986 1 287 0.08585858585858586 198 17 "maltodextrin glucosidase" +BW25113_0404 acpH 0 419793 420374 -1 878 0.058419243986254296 582 34 "acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase" +BW25113_0404__5prime acpH__5prime 0 420375 420572 -1 363 0.0707070707070707 198 14 "acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase" +BW25113_0404__3prime acpH__3prime 0 419595 419792 -1 290 0.08585858585858586 198 17 "acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase" +BW25113_0405 queA 0 420467 421537 1 2435 0.0915032679738562 1071 98 "S-adenosylmethionine:tRNA ribosyltransferase-isomerase" +BW25113_0405__5prime queA__5prime 0 420269 420466 1 165 0.030303030303030304 198 6 "S-adenosylmethionine:tRNA ribosyltransferase-isomerase" +BW25113_0405__3prime queA__3prime 0 421538 421735 1 473 0.13636363636363635 198 27 "S-adenosylmethionine:tRNA ribosyltransferase-isomerase" +BW25113_0406 tgt 0 421593 422720 1 3351 0.13120567375886524 1128 148 "tRNA-guanine transglycosylase" +BW25113_0406__5prime tgt__5prime 0 421395 421592 1 243 0.06565656565656566 198 13 "tRNA-guanine transglycosylase" +BW25113_0406__3prime tgt__3prime 0 422721 422918 1 181 0.0707070707070707 198 14 "tRNA-guanine transglycosylase" +BW25113_0407 yajC 0 422743 423075 1 419 0.07807807807807808 333 26 "SecYEG protein translocase auxillary subunit" +BW25113_0407__5prime yajC__5prime 0 422545 422742 1 244 0.06565656565656566 198 13 "SecYEG protein translocase auxillary subunit" +BW25113_0407__3prime yajC__3prime 0 423076 423273 1 104 0.03535353535353535 198 7 "SecYEG protein translocase auxillary subunit" +BW25113_0408 secD 0 423103 424950 1 253 0.00974025974025974 1848 18 "SecYEG protein translocase auxillary subunit" +BW25113_0408__5prime secD__5prime 0 422905 423102 1 323 0.08080808080808081 198 16 "SecYEG protein translocase auxillary subunit" +BW25113_0408__3prime secD__3prime 0 424951 425148 1 120 0.030303030303030304 198 6 "SecYEG protein translocase auxillary subunit" +BW25113_0409 secF 0 424961 425932 1 198 0.01131687242798354 972 11 "SecYEG protein translocase auxillary subunit" +BW25113_0409__5prime secF__5prime 0 424763 424960 1 227 0.06565656565656566 198 13 "SecYEG protein translocase auxillary subunit" +BW25113_0409__3prime secF__3prime 0 425933 426130 1 234 0.050505050505050504 198 10 "SecYEG protein translocase auxillary subunit" +BW25113_0410 yajD 0 426061 426408 1 1171 0.11206896551724138 348 39 "HNH nuclease family protein" +BW25113_0410__5prime yajD__5prime 0 425863 426060 1 100 0.03535353535353535 198 7 "HNH nuclease family protein" +BW25113_0410__3prime yajD__3prime 0 426409 426606 1 188 0.050505050505050504 198 10 "HNH nuclease family protein" +426423_426521 426423_426521 0 426424 426521 1 0 0.0 98 0 "426423_426521" +426423_426521__5prime 426423_426521__5prime 0 426226 426423 1 760 0.11616161616161616 198 23 "426423_426521" +426423_426521__3prime 426423_426521__3prime 0 426522 426719 1 450 0.09090909090909091 198 18 "426423_426521" +BW25113_0411 tsx 0 426585 427469 -1 2795 0.096045197740113 885 85 "nucleoside channel and receptor of phage T6 and colicin K" +BW25113_0411__5prime tsx__5prime 0 427470 427667 -1 253 0.05555555555555555 198 11 "nucleoside channel and receptor of phage T6 and colicin K" +BW25113_0411__3prime tsx__3prime 0 426387 426584 -1 106 0.020202020202020204 198 4 "nucleoside channel and receptor of phage T6 and colicin K" +BW25113_0412 yajI 0 427768 428307 -1 1996 0.13333333333333333 540 72 "putative lipoprotein" +BW25113_0412__5prime yajI__5prime 0 428308 428505 -1 383 0.0707070707070707 198 14 "putative lipoprotein" +BW25113_0412__3prime yajI__3prime 0 427570 427767 -1 252 0.050505050505050504 198 10 "putative lipoprotein" +BW25113_0413 nrdR 0 428458 428907 1 296 0.05333333333333334 450 24 "Nrd regulon repressor" +BW25113_0413__5prime nrdR__5prime 0 428260 428457 1 389 0.07575757575757576 198 15 "Nrd regulon repressor" +BW25113_0413__3prime nrdR__3prime 0 428908 429105 1 58 0.025252525252525252 198 5 "Nrd regulon repressor" +BW25113_0414 ribD 0 428911 430014 1 51 0.0036231884057971015 1104 4 "fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase" +BW25113_0414__5prime ribD__5prime 0 428713 428910 1 163 0.0707070707070707 198 14 "fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase" +BW25113_0414__3prime ribD__3prime 0 430015 430212 1 30 0.020202020202020204 198 4 "fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase" +BW25113_0415 ribE 0 430103 430573 1 28 0.008492569002123142 471 4 "riboflavin synthase beta chain" +BW25113_0415__5prime ribE__5prime 0 429905 430102 1 30 0.020202020202020204 198 4 "riboflavin synthase beta chain" +BW25113_0415__3prime ribE__3prime 0 430574 430771 1 0 0.0 198 0 "riboflavin synthase beta chain" +BW25113_0416 nusB 0 430593 431012 1 197 0.023809523809523808 420 10 "transcription antitermination protein" +BW25113_0416__5prime nusB__5prime 0 430395 430592 1 28 0.020202020202020204 198 4 "transcription antitermination protein" +BW25113_0416__3prime nusB__3prime 0 431013 431210 1 211 0.03535353535353535 198 7 "transcription antitermination protein" +BW25113_0417 thiL 0 431090 432067 1 108 0.010224948875255624 978 10 "thiamine monophosphate kinase" +BW25113_0417__5prime thiL__5prime 0 430892 431089 1 333 0.050505050505050504 198 10 "thiamine monophosphate kinase" +BW25113_0417__3prime thiL__3prime 0 432068 432265 1 313 0.06565656565656566 198 13 "thiamine monophosphate kinase" +BW25113_0418 pgpA 0 432045 432563 1 887 0.08285163776493257 519 43 "phosphatidylglycerophosphatase A" +BW25113_0418__5prime pgpA__5prime 0 431847 432044 1 32 0.020202020202020204 198 4 "phosphatidylglycerophosphatase A" +BW25113_0418__3prime pgpA__3prime 0 432564 432761 1 304 0.09595959595959595 198 19 "phosphatidylglycerophosphatase A" +432575_432612 432575_432612 0 432576 432612 1 94 0.1891891891891892 37 7 "432575_432612" +432575_432612__5prime 432575_432612__5prime 0 432378 432575 1 366 0.12121212121212122 198 24 "432575_432612" +432575_432612__3prime 432575_432612__3prime 0 432613 432810 1 320 0.06060606060606061 198 12 "432575_432612" +BW25113_0419 yajO 0 432617 433591 -1 2370 0.10461538461538461 975 102 "2-carboxybenzaldehyde reductase" +BW25113_0419__5prime yajO__5prime 0 433592 433789 -1 582 0.13131313131313133 198 26 "2-carboxybenzaldehyde reductase" +BW25113_0419__3prime yajO__3prime 0 432419 432616 -1 440 0.1414141414141414 198 28 "2-carboxybenzaldehyde reductase" +BW25113_0420 dxs 0 433771 435633 -1 70 0.0005367686527106817 1863 1 "1-deoxyxylulose-5-phosphate synthase and thiamine triphosphate-binding and FAD-requiring" +BW25113_0420__5prime dxs__5prime 0 435634 435831 -1 0 0.0 198 0 "1-deoxyxylulose-5-phosphate synthase and thiamine triphosphate-binding and FAD-requiring" +BW25113_0420__3prime dxs__3prime 0 433573 433770 -1 628 0.15151515151515152 198 30 "1-deoxyxylulose-5-phosphate synthase and thiamine triphosphate-binding and FAD-requiring" +BW25113_0421 ispA 0 435658 436557 -1 0 0.0 900 0 "geranyltranstransferase" +BW25113_0421__5prime ispA__5prime 0 436558 436755 -1 173 0.03535353535353535 198 7 "geranyltranstransferase" +BW25113_0421__3prime ispA__3prime 0 435460 435657 -1 0 0.0 198 0 "geranyltranstransferase" +BW25113_0422 xseB 0 436557 436799 -1 173 0.02880658436213992 243 7 "exonuclease VII small subunit" +BW25113_0422__5prime xseB__5prime 0 436800 436997 -1 524 0.14646464646464646 198 29 "exonuclease VII small subunit" +BW25113_0422__3prime xseB__3prime 0 436359 436556 -1 0 0.0 198 0 "exonuclease VII small subunit" +BW25113_0423 thiI 0 437005 438453 1 3013 0.1028295376121463 1449 149 "tRNA s(4)U8 sulfurtransferase" +BW25113_0423__5prime thiI__5prime 0 436807 437004 1 524 0.14646464646464646 198 29 "tRNA s(4)U8 sulfurtransferase" +BW25113_0423__3prime thiI__3prime 0 438454 438651 1 369 0.09090909090909091 198 18 "tRNA s(4)U8 sulfurtransferase" +438473_438505 438473_438505 0 438474 438505 1 0 0.0 32 0 "438473_438505" +438473_438505__5prime 438473_438505__5prime 0 438276 438473 1 884 0.13131313131313133 198 26 "438473_438505" +438473_438505__3prime 438473_438505__3prime 0 438506 438703 1 369 0.09090909090909091 198 18 "438473_438505" +BW25113_0424 yajL 0 438507 439097 -1 1386 0.11505922165820642 591 68 "oxidative-stress-resistance chaperone" +BW25113_0424__5prime yajL__5prime 0 439098 439295 -1 176 0.045454545454545456 198 9 "oxidative-stress-resistance chaperone" +BW25113_0424__3prime yajL__3prime 0 438309 438506 -1 884 0.13131313131313133 198 26 "oxidative-stress-resistance chaperone" +BW25113_0425 panE 0 439060 439971 -1 2912 0.12828947368421054 912 117 "2-dehydropantoate reductase and NADPH-specific" +BW25113_0425__5prime panE__5prime 0 439972 440169 -1 823 0.14646464646464646 198 29 "2-dehydropantoate reductase and NADPH-specific" +BW25113_0425__3prime panE__3prime 0 438862 439059 -1 685 0.15151515151515152 198 30 "2-dehydropantoate reductase and NADPH-specific" +BW25113_0426 yajQ 0 440139 440630 1 571 0.06504065040650407 492 32 "phage Phi6 host factor and ATP/GTP binding protein" +BW25113_0426__5prime yajQ__5prime 0 439941 440138 1 842 0.16161616161616163 198 32 "phage Phi6 host factor and ATP/GTP binding protein" +BW25113_0426__3prime yajQ__3prime 0 440631 440828 1 207 0.050505050505050504 198 10 "phage Phi6 host factor and ATP/GTP binding protein" +440655_440742 440655_440742 0 440656 440742 1 126 0.10344827586206896 87 9 "440655_440742" +440655_440742__5prime 440655_440742__5prime 0 440458 440655 1 80 0.020202020202020204 198 4 "440655_440742" +440655_440742__3prime 440655_440742__3prime 0 440743 440940 1 186 0.020202020202020204 198 4 "440655_440742" +BW25113_0427 yajR 0 440758 442122 -1 2120 0.07765567765567766 1365 106 "putative transporter" +BW25113_0427__5prime yajR__5prime 0 442123 442320 -1 341 0.10101010101010101 198 20 "putative transporter" +BW25113_0427__3prime yajR__3prime 0 440560 440757 -1 206 0.06565656565656566 198 13 "putative transporter" +BW25113_0428 cyoE 0 442271 443161 -1 2238 0.12457912457912458 891 111 "protoheme IX farnesyltransferase" +BW25113_0428__5prime cyoE__5prime 0 443162 443359 -1 312 0.11616161616161616 198 23 "protoheme IX farnesyltransferase" +BW25113_0428__3prime cyoE__3prime 0 442073 442270 -1 427 0.0707070707070707 198 14 "protoheme IX farnesyltransferase" +BW25113_0429 cyoD 0 443173 443502 -1 670 0.12121212121212122 330 40 "cytochrome o ubiquinol oxidase subunit IV" +BW25113_0429__5prime cyoD__5prime 0 443503 443700 -1 363 0.12121212121212122 198 24 "cytochrome o ubiquinol oxidase subunit IV" +BW25113_0429__3prime cyoD__3prime 0 442975 443172 -1 219 0.09595959595959595 198 19 "cytochrome o ubiquinol oxidase subunit IV" +BW25113_0430 cyoC 0 443502 444116 -1 732 0.0943089430894309 615 58 "cytochrome o ubiquinol oxidase subunit III" +BW25113_0430__5prime cyoC__5prime 0 444117 444314 -1 496 0.09090909090909091 198 18 "cytochrome o ubiquinol oxidase subunit III" +BW25113_0430__3prime cyoC__3prime 0 443304 443501 -1 358 0.08585858585858586 198 17 "cytochrome o ubiquinol oxidase subunit III" +BW25113_0431 cyoB 0 444106 446097 -1 4292 0.10943775100401607 1992 218 "cytochrome o ubiquinol oxidase subunit I" +BW25113_0431__5prime cyoB__5prime 0 446098 446295 -1 860 0.15151515151515152 198 30 "cytochrome o ubiquinol oxidase subunit I" +BW25113_0431__3prime cyoB__3prime 0 443908 444105 -1 196 0.08585858585858586 198 17 "cytochrome o ubiquinol oxidase subunit I" +BW25113_0432 cyoA 0 446119 447066 -1 3478 0.16244725738396623 948 154 "cytochrome o ubiquinol oxidase subunit II" +BW25113_0432__5prime cyoA__5prime 0 447067 447264 -1 612 0.14646464646464646 198 29 "cytochrome o ubiquinol oxidase subunit II" +BW25113_0432__3prime cyoA__3prime 0 445921 446118 -1 421 0.15151515151515152 198 30 "cytochrome o ubiquinol oxidase subunit II" +BW25113_0433 ampG 0 447526 449001 -1 4331 0.13279132791327913 1476 196 "muropeptide transporter" +BW25113_0433__5prime ampG__5prime 0 449002 449199 -1 949 0.17676767676767677 198 35 "muropeptide transporter" +BW25113_0433__3prime ampG__3prime 0 447328 447525 -1 101 0.030303030303030304 198 6 "muropeptide transporter" +BW25113_0434 yajG 0 449045 449623 -1 2153 0.15889464594127806 579 92 "putative lipoprotein" +BW25113_0434__5prime yajG__5prime 0 449624 449821 -1 333 0.09090909090909091 198 18 "putative lipoprotein" +BW25113_0434__3prime yajG__3prime 0 448847 449044 -1 783 0.14646464646464646 198 29 "putative lipoprotein" +BW25113_0435 bolA 0 449928 450245 1 1124 0.14465408805031446 318 46 "stationary-phase morphogene and transcriptional repressor for mreB; also regulator for dacA and dacC and and ampC" +BW25113_0435__5prime bolA__5prime 0 449730 449927 1 355 0.09090909090909091 198 18 "stationary-phase morphogene and transcriptional repressor for mreB; also regulator for dacA and dacC and and ampC" +BW25113_0435__3prime bolA__3prime 0 450246 450443 1 12 0.010101010101010102 198 2 "stationary-phase morphogene and transcriptional repressor for mreB; also regulator for dacA and dacC and and ampC" +BW25113_0436 tig 0 450589 451887 1 3801 0.11547344110854503 1299 150 "peptidyl-prolyl cis/trans isomerase (trigger factor)" +BW25113_0436__5prime tig__5prime 0 450391 450588 1 294 0.06565656565656566 198 13 "peptidyl-prolyl cis/trans isomerase (trigger factor)" +BW25113_0436__3prime tig__3prime 0 451888 452085 1 404 0.08585858585858586 198 17 "peptidyl-prolyl cis/trans isomerase (trigger factor)" +BW25113_0437 clpP 0 452133 452756 1 1242 0.12179487179487179 624 76 "proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases" +BW25113_0437__5prime clpP__5prime 0 451935 452132 1 309 0.09595959595959595 198 19 "proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases" +BW25113_0437__3prime clpP__3prime 0 452757 452954 1 490 0.1111111111111111 198 22 "proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases" +BW25113_0438 clpX 0 452882 454156 1 2567 0.08235294117647059 1275 105 "ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease" +BW25113_0438__5prime clpX__5prime 0 452684 452881 1 471 0.12626262626262627 198 25 "ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease" +BW25113_0438__3prime clpX__3prime 0 454157 454354 1 158 0.050505050505050504 198 10 "ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease" +BW25113_0439 lon 0 454344 456698 1 1954 0.059447983014861996 2355 140 "DNA-binding ATP-dependent protease La" +BW25113_0439__5prime lon__5prime 0 454146 454343 1 158 0.050505050505050504 198 10 "DNA-binding ATP-dependent protease La" +BW25113_0439__3prime lon__3prime 0 456699 456896 1 558 0.15656565656565657 198 31 "DNA-binding ATP-dependent protease La" +BW25113_0439 lon 0 454564 455664 1 925 0.06993642143505904 1101 77 "454563_455664" +BW25113_0439__5prime lon__5prime 0 454366 454563 1 47 0.020202020202020204 198 4 "454563_455664" +BW25113_0439__3prime lon__3prime 0 455665 455862 1 150 0.0707070707070707 198 14 "454563_455664" +BW25113_0440 hupB 0 456907 457179 1 593 0.10256410256410256 273 28 "HU and DNA-binding transcriptional regulator and beta subunit" +BW25113_0440__5prime hupB__5prime 0 456709 456906 1 496 0.13131313131313133 198 26 "HU and DNA-binding transcriptional regulator and beta subunit" +BW25113_0440__3prime hupB__3prime 0 457180 457377 1 662 0.19696969696969696 198 39 "HU and DNA-binding transcriptional regulator and beta subunit" +BW25113_0441 ppiD 0 457371 459242 1 5639 0.13675213675213677 1872 256 "periplasmic folding chaperone and has an inactive PPIase domain" +BW25113_0441__5prime ppiD__5prime 0 457173 457370 1 584 0.17676767676767677 198 35 "periplasmic folding chaperone and has an inactive PPIase domain" +BW25113_0441__3prime ppiD__3prime 0 459243 459440 1 394 0.09090909090909091 198 18 "periplasmic folding chaperone and has an inactive PPIase domain" +BW25113_0442 ybaV 0 459393 459764 1 1496 0.16129032258064516 372 60 "putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein" +BW25113_0442__5prime ybaV__5prime 0 459195 459392 1 217 0.07575757575757576 198 15 "putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein" +BW25113_0442__3prime ybaV__3prime 0 459765 459962 1 445 0.1111111111111111 198 22 "putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein" +BW25113_0443 fadM 0 459858 460256 1 1059 0.12781954887218044 399 51 "long-chain acyl-CoA thioesterase III" +BW25113_0443__5prime fadM__5prime 0 459660 459857 1 671 0.16161616161616163 198 32 "long-chain acyl-CoA thioesterase III" +BW25113_0443__3prime fadM__3prime 0 460257 460454 1 386 0.08080808080808081 198 16 "long-chain acyl-CoA thioesterase III" +460268_460293 460268_460293 0 460269 460293 1 37 0.08 25 2 "460268_460293" +460268_460293__5prime 460268_460293__5prime 0 460071 460268 1 585 0.13131313131313133 198 26 "460268_460293" +460268_460293__3prime 460268_460293__3prime 0 460294 460491 1 349 0.0707070707070707 198 14 "460268_460293" +BW25113_0444 queC 0 460308 461003 -1 1530 0.10201149425287356 696 71 "7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis" +BW25113_0444__5prime queC__5prime 0 461004 461201 -1 631 0.06060606060606061 198 12 "7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis" +BW25113_0444__3prime queC__3prime 0 460110 460307 -1 519 0.13636363636363635 198 27 "7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis" +BW25113_0445 ybaE 0 461068 462768 -1 6803 0.13639035861258084 1701 232 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_0445__5prime ybaE__5prime 0 462769 462966 -1 280 0.10101010101010101 198 20 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_0445__3prime ybaE__3prime 0 460870 461067 -1 499 0.11616161616161616 198 23 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_0446 cof 0 462868 463686 1 2430 0.10989010989010989 819 90 "thiamine pyrimidine pyrophosphate hydrolase; HMP-PP phosphatase" +BW25113_0446__5prime cof__5prime 0 462670 462867 1 446 0.09595959595959595 198 19 "thiamine pyrimidine pyrophosphate hydrolase; HMP-PP phosphatase" +BW25113_0446__3prime cof__3prime 0 463687 463884 1 115 0.05555555555555555 198 11 "thiamine pyrimidine pyrophosphate hydrolase; HMP-PP phosphatase" +BW25113_0447 ybaO 0 463839 464297 1 992 0.11328976034858387 459 52 "putative DNA-binding transcriptional regulator" +BW25113_0447__5prime ybaO__5prime 0 463641 463838 1 813 0.10606060606060606 198 21 "putative DNA-binding transcriptional regulator" +BW25113_0447__3prime ybaO__3prime 0 464298 464495 1 491 0.13131313131313133 198 26 "putative DNA-binding transcriptional regulator" +BW25113_0448 mdlA 0 464327 466099 1 4529 0.11562323745064862 1773 205 "putative multidrug transporter subunit of ABC superfamily and ATP-binding component" +BW25113_0448__5prime mdlA__5prime 0 464129 464326 1 479 0.12626262626262627 198 25 "putative multidrug transporter subunit of ABC superfamily and ATP-binding component" +BW25113_0448__3prime mdlA__3prime 0 466100 466297 1 167 0.045454545454545456 198 9 "putative multidrug transporter subunit of ABC superfamily and ATP-binding component" +BW25113_0449 mdlB 0 466092 467873 1 4150 0.10718294051627385 1782 191 "putative multidrug transporter subunit of ABC superfamily and ATP-binding component" +BW25113_0449__5prime mdlB__5prime 0 465894 466091 1 831 0.1111111111111111 198 22 "putative multidrug transporter subunit of ABC superfamily and ATP-binding component" +BW25113_0449__3prime mdlB__3prime 0 467874 468071 1 589 0.10101010101010101 198 20 "putative multidrug transporter subunit of ABC superfamily and ATP-binding component" +BW25113_0450 glnK 0 468054 468392 1 335 0.07079646017699115 339 24 "nitrogen assimilation regulatory protein for GlnL and GlnE and and AmtB" +BW25113_0450__5prime glnK__5prime 0 467856 468053 1 612 0.10606060606060606 198 21 "nitrogen assimilation regulatory protein for GlnL and GlnE and and AmtB" +BW25113_0450__3prime glnK__3prime 0 468393 468590 1 518 0.11616161616161616 198 23 "nitrogen assimilation regulatory protein for GlnL and GlnE and and AmtB" +BW25113_0451 amtB 0 468422 469708 1 2592 0.10334110334110334 1287 133 "ammonium transporter" +BW25113_0451__5prime amtB__5prime 0 468224 468421 1 353 0.06060606060606061 198 12 "ammonium transporter" +BW25113_0451__3prime amtB__3prime 0 469709 469906 1 565 0.15656565656565657 198 31 "ammonium transporter" +469726_469749 469726_469749 0 469727 469749 1 26 0.13043478260869565 23 3 "469726_469749" +469726_469749__5prime 469726_469749__5prime 0 469529 469726 1 154 0.06565656565656566 198 13 "469726_469749" +469726_469749__3prime 469726_469749__3prime 0 469750 469947 1 647 0.17676767676767677 198 35 "469726_469749" +BW25113_0452 tesB 0 469757 470617 -1 1726 0.08362369337979095 861 72 "acyl-CoA thioesterase 2" +BW25113_0452__5prime tesB__5prime 0 470618 470815 -1 295 0.05555555555555555 198 11 "acyl-CoA thioesterase 2" +BW25113_0452__3prime tesB__3prime 0 469559 469756 -1 175 0.07575757575757576 198 15 "acyl-CoA thioesterase 2" +BW25113_0453 ybaY 0 470835 471407 1 1583 0.11867364746945899 573 68 "outer membrane lipoprotein" +BW25113_0453__5prime ybaY__5prime 0 470637 470834 1 237 0.045454545454545456 198 9 "outer membrane lipoprotein" +BW25113_0453__3prime ybaY__3prime 0 471408 471605 1 587 0.13636363636363635 198 27 "outer membrane lipoprotein" +BW25113_0454 ybaZ 0 471438 471827 -1 557 0.07179487179487179 390 28 "excision repair protein and alkyltransferase-like protein ATL" +BW25113_0454__5prime ybaZ__5prime 0 471828 472025 -1 186 0.045454545454545456 198 9 "excision repair protein and alkyltransferase-like protein ATL" +BW25113_0454__3prime ybaZ__3prime 0 471240 471437 -1 378 0.12626262626262627 198 25 "excision repair protein and alkyltransferase-like protein ATL" +BW25113_0455 ffs 0 471904 472017 1 83 0.017543859649122806 114 2 "4.5S sRNA component of Signal Recognition Particle (SRP)" +BW25113_0455__5prime ffs__5prime 0 471706 471903 1 103 0.03535353535353535 198 7 "4.5S sRNA component of Signal Recognition Particle (SRP)" +BW25113_0455__3prime ffs__3prime 0 472018 472215 1 362 0.10606060606060606 198 21 "4.5S sRNA component of Signal Recognition Particle (SRP)" +BW25113_0456 ybaA 0 472128 472481 1 497 0.08757062146892655 354 31 "DUF1428 family protein" +BW25113_0456__5prime ybaA__5prime 0 471930 472127 1 126 0.025252525252525252 198 5 "DUF1428 family protein" +BW25113_0456__3prime ybaA__3prime 0 472482 472679 1 1359 0.2222222222222222 198 44 "DUF1428 family protein" +BW25113_0457 ylaB 0 472523 474073 -1 8580 0.19213410702772404 1551 298 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_0457__5prime ylaB__5prime 0 474074 474271 -1 1664 0.21212121212121213 198 42 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_0457__3prime ylaB__3prime 0 472325 472522 -1 178 0.05555555555555555 198 11 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_0458 ylaC 0 474237 474707 -1 1585 0.14225053078556263 471 67 "DUF1449 family inner membrane protein" +BW25113_0458__5prime ylaC__5prime 0 474708 474905 -1 817 0.11616161616161616 198 23 "DUF1449 family inner membrane protein" +BW25113_0458__3prime ylaC__3prime 0 474039 474236 -1 1756 0.22727272727272727 198 45 "DUF1449 family inner membrane protein" +BW25113_0459 maa 0 474823 475374 -1 7130 0.34601449275362317 552 191 "maltose O-acetyltransferase" +BW25113_0459__5prime maa__5prime 0 475375 475572 -1 2214 0.24242424242424243 198 48 "maltose O-acetyltransferase" +BW25113_0459__3prime maa__3prime 0 474625 474822 -1 422 0.08080808080808081 198 16 "maltose O-acetyltransferase" +BW25113_0460 hha 0 475546 475764 -1 1128 0.2831050228310502 219 62 "modulator of gene expression and with H-NS" +BW25113_0460__5prime hha__5prime 0 475765 475962 -1 1909 0.2474747474747475 198 49 "modulator of gene expression and with H-NS" +BW25113_0460__3prime hha__3prime 0 475348 475545 -1 2154 0.22727272727272727 198 45 "modulator of gene expression and with H-NS" +BW25113_0461 tomB 0 475790 476164 -1 3705 0.296 375 111 "Hha toxicity attenuator; conjugation-related protein" +BW25113_0461__5prime tomB__5prime 0 476165 476362 -1 2297 0.3383838383838384 198 67 "Hha toxicity attenuator; conjugation-related protein" +BW25113_0461__3prime tomB__3prime 0 475592 475789 -1 1198 0.2777777777777778 198 55 "Hha toxicity attenuator; conjugation-related protein" +BW25113_0462 acrB 0 476710 479859 -1 13694 0.14285714285714285 3150 450 "multidrug efflux system protein" +BW25113_0462__5prime acrB__5prime 0 479860 480057 -1 799 0.15151515151515152 198 30 "multidrug efflux system protein" +BW25113_0462__3prime acrB__3prime 0 476512 476709 -1 1181 0.23232323232323232 198 46 "multidrug efflux system protein" +BW25113_0463 acrA 0 479882 481075 -1 4391 0.14321608040201006 1194 171 "multidrug efflux system" +BW25113_0463__5prime acrA__5prime 0 481076 481273 -1 293 0.0707070707070707 198 14 "multidrug efflux system" +BW25113_0463__3prime acrA__3prime 0 479684 479881 -1 583 0.1414141414141414 198 28 "multidrug efflux system" +BW25113_0464 acrR 0 481217 481864 1 5714 0.25617283950617287 648 166 "transcriptional repressor" +BW25113_0464__5prime acrR__5prime 0 481019 481216 1 345 0.10606060606060606 198 21 "transcriptional repressor" +BW25113_0464__3prime acrR__3prime 0 481865 482062 1 1032 0.25757575757575757 198 51 "transcriptional repressor" +BW25113_0465 mscK 0 481992 485354 1 10520 0.13232233125185847 3363 445 "mechanosensitive channel protein and intermediate conductance and K+ regulated" +BW25113_0465__5prime mscK__5prime 0 481794 481991 1 3287 0.3888888888888889 198 77 "mechanosensitive channel protein and intermediate conductance and K+ regulated" +BW25113_0465__3prime mscK__3prime 0 485355 485552 1 886 0.1717171717171717 198 34 "mechanosensitive channel protein and intermediate conductance and K+ regulated" +485414_485512 485414_485512 0 485415 485512 1 505 0.17346938775510204 98 17 "485414_485512" +485414_485512__5prime 485414_485512__5prime 0 485217 485414 1 1097 0.1717171717171717 198 34 "485414_485512" +485414_485512__3prime 485414_485512__3prime 0 485513 485710 1 265 0.0707070707070707 198 14 "485414_485512" +BW25113_0466 ybaM 0 485566 485727 -1 144 0.043209876543209874 162 7 "DUF2496 family protein" +BW25113_0466__5prime ybaM__5prime 0 485728 485925 -1 562 0.09595959595959595 198 19 "DUF2496 family protein" +BW25113_0466__3prime ybaM__3prime 0 485368 485565 -1 805 0.16666666666666666 198 33 "DUF2496 family protein" +BW25113_0467 priC 0 485741 486268 -1 1080 0.09659090909090909 528 51 '"primosomal replication protein N''''"' +BW25113_0467__5prime priC__5prime 0 486269 486466 -1 212 0.05555555555555555 198 11 '"primosomal replication protein N''''"' +BW25113_0467__3prime priC__3prime 0 485543 485740 -1 211 0.04040404040404041 198 8 '"primosomal replication protein N''''"' +BW25113_0468 ybaN 0 486338 486715 1 341 0.042328042328042326 378 16 "DUF454 family inner membrane protein" +BW25113_0468__5prime ybaN__5prime 0 486140 486337 1 191 0.06565656565656566 198 13 "DUF454 family inner membrane protein" +BW25113_0468__3prime ybaN__3prime 0 486716 486913 1 399 0.14646464646464646 198 29 "DUF454 family inner membrane protein" +BW25113_0469 apt 0 486868 487419 1 1258 0.10326086956521739 552 57 "adenine phosphoribosyltransferase" +BW25113_0469__5prime apt__5prime 0 486670 486867 1 298 0.1111111111111111 198 22 "adenine phosphoribosyltransferase" +BW25113_0469__3prime apt__3prime 0 487420 487617 1 26 0.010101010101010102 198 2 "adenine phosphoribosyltransferase" +BW25113_0470 dnaX 0 487548 489479 1 19 0.0010351966873706005 1932 2 "DNA polymerase III/DNA elongation factor III and tau and gamma subunits" +BW25113_0470__5prime dnaX__5prime 0 487350 487547 1 592 0.05555555555555555 198 11 "DNA polymerase III/DNA elongation factor III and tau and gamma subunits" +BW25113_0470__3prime dnaX__3prime 0 489480 489677 1 524 0.1111111111111111 198 22 "DNA polymerase III/DNA elongation factor III and tau and gamma subunits" +BW25113_0471 ybaB 0 489532 489861 1 315 0.07272727272727272 330 24 "DNA-binding protein and putative nucleoid-associated protein" +BW25113_0471__5prime ybaB__5prime 0 489334 489531 1 394 0.0707070707070707 198 14 "DNA-binding protein and putative nucleoid-associated protein" +BW25113_0471__3prime ybaB__3prime 0 489862 490059 1 641 0.1414141414141414 198 28 "DNA-binding protein and putative nucleoid-associated protein" +BW25113_0472 recR 0 489861 490466 1 1614 0.12376237623762376 606 75 "gap repair protein" +BW25113_0472__5prime recR__5prime 0 489663 489860 1 214 0.09090909090909091 198 18 "gap repair protein" +BW25113_0472__3prime recR__3prime 0 490467 490664 1 199 0.050505050505050504 198 10 "gap repair protein" +BW25113_0473 htpG 0 490576 492450 1 6548 0.1504 1875 282 "protein refolding molecular co-chaperone Hsp90 and Hsp70-dependent; heat-shock protein; ATPase" +BW25113_0473__5prime htpG__5prime 0 490378 490575 1 375 0.07575757575757576 198 15 "protein refolding molecular co-chaperone Hsp90 and Hsp70-dependent; heat-shock protein; ATPase" +BW25113_0473__3prime htpG__3prime 0 492451 492648 1 223 0.06565656565656566 198 13 "protein refolding molecular co-chaperone Hsp90 and Hsp70-dependent; heat-shock protein; ATPase" +492456_492482 492456_492482 0 492457 492482 1 13 0.038461538461538464 26 1 "492456_492482" +492456_492482__5prime 492456_492482__5prime 0 492259 492456 1 390 0.13636363636363635 198 27 "492456_492482" +492456_492482__3prime 492456_492482__3prime 0 492483 492680 1 210 0.06060606060606061 198 12 "492456_492482" +BW25113_0474 adk 0 492631 493275 1 0 0.0 645 0 "adenylate kinase" +BW25113_0474__5prime adk__5prime 0 492433 492630 1 241 0.08080808080808081 198 16 "adenylate kinase" +BW25113_0474__3prime adk__3prime 0 493276 493473 1 356 0.0707070707070707 198 14 "adenylate kinase" +493371_493389 493371_493389 0 493372 493389 1 0 0.0 18 0 "493371_493389" +493371_493389__5prime 493371_493389__5prime 0 493174 493371 1 351 0.06565656565656566 198 13 "493371_493389" +493371_493389__3prime 493371_493389__3prime 0 493390 493587 1 44 0.025252525252525252 198 5 "493371_493389" +BW25113_0475 hemH 0 493511 494473 1 56 0.006230529595015576 963 6 "ferrochelatase" +BW25113_0475__5prime hemH__5prime 0 493313 493510 1 395 0.09090909090909091 198 18 "ferrochelatase" +BW25113_0475__3prime hemH__3prime 0 494474 494671 1 378 0.13131313131313133 198 26 "ferrochelatase" +BW25113_0476 aes 0 494470 495429 -1 1270 0.075 960 72 "acetyl esterase" +BW25113_0476__5prime aes__5prime 0 495430 495627 -1 171 0.07575757575757576 198 15 "acetyl esterase" +BW25113_0476__3prime aes__3prime 0 494272 494469 -1 37 0.020202020202020204 198 4 "acetyl esterase" +BW25113_0477 gsk 0 495581 496885 1 3777 0.14022988505747128 1305 183 "inosine/guanosine kinase" +BW25113_0477__5prime gsk__5prime 0 495383 495580 1 96 0.04040404040404041 198 8 "inosine/guanosine kinase" +BW25113_0477__3prime gsk__3prime 0 496886 497083 1 110 0.030303030303030304 198 6 "inosine/guanosine kinase" +496899_496983 496899_496983 0 496900 496983 1 52 0.023809523809523808 84 2 "496899_496983" +496899_496983__5prime 496899_496983__5prime 0 496702 496899 1 528 0.14646464646464646 198 29 "496899_496983" +496899_496983__3prime 496899_496983__3prime 0 496984 497181 1 382 0.05555555555555555 198 11 "496899_496983" +BW25113_0478 ybaL 0 497018 498694 -1 6112 0.13178294573643412 1677 221 "inner membrane putative NAD(P)-binding transporter" +BW25113_0478__5prime ybaL__5prime 0 498695 498892 -1 41 0.015151515151515152 198 3 "inner membrane putative NAD(P)-binding transporter" +BW25113_0478__3prime ybaL__3prime 0 496820 497017 -1 265 0.07575757575757576 198 15 "inner membrane putative NAD(P)-binding transporter" +498884_498885 498884_498885 0 498885 498885 1 0 0.0 1 0 "498884_498885" +498884_498885__5prime 498884_498885__5prime 0 498687 498884 1 135 0.020202020202020204 198 4 "498884_498885" +498884_498885__3prime 498884_498885__3prime 0 498886 499083 1 206 0.06060606060606061 198 12 "498884_498885" +BW25113_0479 fsr 0 498932 500152 -1 3200 0.10810810810810811 1221 132 "putative fosmidomycin efflux system protein" +BW25113_0479__5prime fsr__5prime 0 500153 500350 -1 180 0.0707070707070707 198 14 "putative fosmidomycin efflux system protein" +BW25113_0479__3prime fsr__3prime 0 498734 498931 -1 15 0.010101010101010102 198 2 "putative fosmidomycin efflux system protein" +BW25113_0480 ushA 0 500370 502022 1 3556 0.1088929219600726 1653 180 '"bifunctional UDP-sugar hydrolase/5''-nucleotidase"' +BW25113_0480__5prime ushA__5prime 0 500172 500369 1 221 0.08080808080808081 198 16 '"bifunctional UDP-sugar hydrolase/5''-nucleotidase"' +BW25113_0480__3prime ushA__3prime 0 502023 502220 1 209 0.06565656565656566 198 13 '"bifunctional UDP-sugar hydrolase/5''-nucleotidase"' +502031_502051 502031_502051 0 502032 502051 1 96 0.2 20 4 "502031_502051" +502031_502051__5prime 502031_502051__5prime 0 501834 502031 1 304 0.12626262626262627 198 25 "502031_502051" +502031_502051__3prime 502031_502051__3prime 0 502052 502249 1 145 0.06060606060606061 198 12 "502031_502051" +BW25113_0481 ybaK 0 502059 502538 -1 655 0.07083333333333333 480 34 "Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase" +BW25113_0481__5prime ybaK__5prime 0 502539 502736 -1 334 0.08585858585858586 198 17 "Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase" +BW25113_0481__3prime ybaK__3prime 0 501861 502058 -1 382 0.13636363636363635 198 27 "Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase" +BW25113_4585 chiX 0 502660 502743 1 107 0.03571428571428571 84 3 "sRNA antisense regulator of OM chitoporin ChiP(YbfM) and Hfq-dependent" +BW25113_4585__5prime chiX__5prime 0 502462 502659 1 233 0.07575757575757576 198 15 "sRNA antisense regulator of OM chitoporin ChiP(YbfM) and Hfq-dependent" +BW25113_4585__3prime chiX__3prime 0 502744 502941 1 909 0.19696969696969696 198 39 "sRNA antisense regulator of OM chitoporin ChiP(YbfM) and Hfq-dependent" +BW25113_0482 ybaP 0 502742 503536 -1 2595 0.1421383647798742 795 113 "TraB family protein" +BW25113_0482__5prime ybaP__5prime 0 503537 503734 -1 147 0.07575757575757576 198 15 "TraB family protein" +BW25113_0482__3prime ybaP__3prime 0 502544 502741 -1 334 0.08585858585858586 198 17 "TraB family protein" +BW25113_0483 ybaQ 0 503674 504015 1 407 0.05847953216374269 342 20 "putative DNA-binding transcriptional regulator" +BW25113_0483__5prime ybaQ__5prime 0 503476 503673 1 245 0.10101010101010101 198 20 "putative DNA-binding transcriptional regulator" +BW25113_0483__3prime ybaQ__3prime 0 504016 504213 1 665 0.15656565656565657 198 31 "putative DNA-binding transcriptional regulator" +504037_504273 504037_504273 0 504038 504273 1 708 0.15677966101694915 236 37 "504037_504273" +504037_504273__5prime 504037_504273__5prime 0 503840 504037 1 261 0.04040404040404041 198 8 "504037_504273" +504037_504273__3prime 504037_504273__3prime 0 504274 504471 1 1031 0.15151515151515152 198 30 "504037_504273" +BW25113_0484 copA 0 504331 506835 -1 8294 0.1313373253493014 2505 329 "copper transporter" +BW25113_0484__5prime copA__5prime 0 506836 507033 -1 133 0.050505050505050504 198 10 "copper transporter" +BW25113_0484__3prime copA__3prime 0 504133 504330 -1 752 0.14646464646464646 198 29 "copper transporter" +BW25113_0485 glsA 0 507097 508029 1 2943 0.1157556270096463 933 108 "glutaminase 1" +BW25113_0485__5prime glsA__5prime 0 506899 507096 1 94 0.050505050505050504 198 10 "glutaminase 1" +BW25113_0485__3prime glsA__3prime 0 508030 508227 1 277 0.10101010101010101 198 20 "glutaminase 1" +BW25113_0486 ybaT 0 508032 509324 1 3204 0.09899458623356536 1293 128 "putative amino acid transporter" +BW25113_0486__5prime ybaT__5prime 0 507834 508031 1 276 0.06060606060606061 198 12 "putative amino acid transporter" +BW25113_0486__3prime ybaT__3prime 0 509325 509522 1 558 0.10606060606060606 198 21 "putative amino acid transporter" +BW25113_0487 cueR 0 509449 509856 1 1068 0.08823529411764706 408 36 "copper-responsive regulon transcriptional regulator" +BW25113_0487__5prime cueR__5prime 0 509251 509448 1 1440 0.14646464646464646 198 29 "copper-responsive regulon transcriptional regulator" +BW25113_0487__3prime cueR__3prime 0 509857 510054 1 476 0.14646464646464646 198 29 "copper-responsive regulon transcriptional regulator" +BW25113_0488 ybbJ 0 509857 510315 -1 924 0.12854030501089325 459 59 "inner membrane protein that stimulates the ftsH htpX mutant suppressor activity of QmcA" +BW25113_0488__5prime ybbJ__5prime 0 510316 510513 -1 716 0.15151515151515152 198 30 "inner membrane protein that stimulates the ftsH htpX mutant suppressor activity of QmcA" +BW25113_0488__3prime ybbJ__3prime 0 509659 509856 -1 590 0.08080808080808081 198 16 "inner membrane protein that stimulates the ftsH htpX mutant suppressor activity of QmcA" +BW25113_0489 qmcA 0 510312 511229 -1 3413 0.1568627450980392 918 144 "PHB domain membrane-anchored putative protease" +BW25113_0489__5prime qmcA__5prime 0 511230 511427 -1 797 0.1919191919191919 198 38 "PHB domain membrane-anchored putative protease" +BW25113_0489__3prime qmcA__3prime 0 510114 510311 -1 448 0.15151515151515152 198 30 "PHB domain membrane-anchored putative protease" +BW25113_0490 fetA 0 511375 512052 1 7619 0.3525073746312684 678 239 "iron exporter and ATP-binding subunit and ABC transporter FetAB subunit; peroxide resistance protein" +BW25113_0490__5prime fetA__5prime 0 511177 511374 1 862 0.18181818181818182 198 36 "iron exporter and ATP-binding subunit and ABC transporter FetAB subunit; peroxide resistance protein" +BW25113_0490__3prime fetA__3prime 0 512053 512250 1 1892 0.35858585858585856 198 71 "iron exporter and ATP-binding subunit and ABC transporter FetAB subunit; peroxide resistance protein" +BW25113_0491 fetB 0 512039 512818 1 6775 0.3333333333333333 780 260 "iron exporter permease subunit and ABC transporter FetAB; peroxide resistance protein" +BW25113_0491__5prime fetB__5prime 0 511841 512038 1 1635 0.35858585858585856 198 71 "iron exporter permease subunit and ABC transporter FetAB; peroxide resistance protein" +BW25113_0491__3prime fetB__3prime 0 512819 513016 1 1074 0.12626262626262627 198 25 "iron exporter permease subunit and ABC transporter FetAB; peroxide resistance protein" +512824_512850 512824_512850 0 512825 512850 1 53 0.23076923076923078 26 6 "512824_512850" +512824_512850__5prime 512824_512850__5prime 0 512627 512824 1 2079 0.2676767676767677 198 53 "512824_512850" +512824_512850__3prime 512824_512850__3prime 0 512851 513048 1 1160 0.10101010101010101 198 20 "512824_512850" +BW25113_0492 ybbN 0 512881 513735 -1 2918 0.08771929824561403 855 75 "DnaK co-chaperone and thioredoxin-like protein" +BW25113_0492__5prime ybbN__5prime 0 513736 513933 -1 668 0.15151515151515152 198 30 "DnaK co-chaperone and thioredoxin-like protein" +BW25113_0492__3prime ybbN__3prime 0 512683 512880 -1 1841 0.23232323232323232 198 46 "DnaK co-chaperone and thioredoxin-like protein" +BW25113_0493 ybbO 0 513796 514605 -1 2216 0.11975308641975309 810 97 "putative oxidoreductase" +BW25113_0493__5prime ybbO__5prime 0 514606 514803 -1 549 0.1414141414141414 198 28 "putative oxidoreductase" +BW25113_0493__3prime ybbO__3prime 0 513598 513795 -1 515 0.08585858585858586 198 17 "putative oxidoreductase" +BW25113_0494 tesA 0 514595 515221 -1 1280 0.10047846889952153 627 63 "multifunctional acyl-CoA thioesterase 1; protease I; lysophospholipase L1" +BW25113_0494__5prime tesA__5prime 0 515222 515419 -1 641 0.11616161616161616 198 23 "multifunctional acyl-CoA thioesterase 1; protease I; lysophospholipase L1" +BW25113_0494__3prime tesA__3prime 0 514397 514594 -1 219 0.050505050505050504 198 10 "multifunctional acyl-CoA thioesterase 1; protease I; lysophospholipase L1" +514681_514907 514681_514907 0 514682 514907 1 511 0.13274336283185842 226 30 "514681_514907" +514681_514907__5prime 514681_514907__5prime 0 514484 514681 1 247 0.06060606060606061 198 12 "514681_514907" +514681_514907__3prime 514681_514907__3prime 0 514908 515105 1 529 0.09595959595959595 198 19 "514681_514907" +BW25113_0495 ybbA 0 515189 515875 1 1526 0.09170305676855896 687 63 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_0495__5prime ybbA__5prime 0 514991 515188 1 395 0.0707070707070707 198 14 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_0495__3prime ybbA__3prime 0 515876 516073 1 442 0.08080808080808081 198 16 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_0496 ybbP 0 515872 518286 1 7584 0.1349896480331263 2415 326 "putative ABC transporter permease" +BW25113_0496__5prime ybbP__5prime 0 515674 515871 1 248 0.08585858585858586 198 17 "putative ABC transporter permease" +BW25113_0496__3prime ybbP__3prime 0 518287 518484 1 241 0.06565656565656566 198 13 "putative ABC transporter permease" +BW25113_0497 rhsD 0 518717 522997 1 21554 0.16024293389395 4281 686 "Rhs family putative polymorphic toxin" +BW25113_0497__5prime rhsD__5prime 0 518519 518716 1 149 0.03535353535353535 198 7 "Rhs family putative polymorphic toxin" +BW25113_0497__3prime rhsD__3prime 0 522998 523195 1 77 0.06060606060606061 198 12 "Rhs family putative polymorphic toxin" +BW25113_0498 ybbC 0 523037 523405 1 516 0.11924119241192412 369 44 "putative immunity protein" +BW25113_0498__5prime ybbC__5prime 0 522839 523036 1 396 0.10101010101010101 198 20 "putative immunity protein" +BW25113_0498__3prime ybbC__3prime 0 523406 523603 1 4783 0.5858585858585859 198 116 "putative immunity protein" +BW25113_0499 rhsH 0 523408 524115 1 12202 0.3912429378531073 708 277 "523407_524115" +BW25113_0499__5prime rhsH__5prime 0 523210 523407 1 457 0.17676767676767677 198 35 "523407_524115" +BW25113_0499__3prime rhsH__3prime 0 524116 524313 1 113 0.05555555555555555 198 11 "523407_524115" +BW25113_0501 ybbD 0 524096 524586 1 1745 0.12016293279022404 491 59 "524095_524586" +BW25113_0501__5prime ybbD__5prime 0 523898 524095 1 1125 0.20202020202020202 198 40 "524095_524586" +BW25113_0501__3prime ybbD__3prime 0 524587 524784 1 1483 0.31313131313131315 198 62 "524095_524586" +BW25113_4632 ylbI 0 524956 525048 1 1781 0.46236559139784944 93 43 "524955_525048" +BW25113_4632__5prime ylbI__5prime 0 524758 524955 1 1442 0.17676767676767677 198 35 "524955_525048" +BW25113_4632__3prime ylbI__3prime 0 525049 525246 1 746 0.18181818181818182 198 36 "524955_525048" +BW25113_0502 ylbG 0 525051 525472 -1 1184 0.14454976303317535 422 61 "525050_525472" +BW25113_0502__5prime ylbG__5prime 0 525473 525670 -1 664 0.1414141414141414 198 28 "525050_525472" +BW25113_0502__3prime ylbG__3prime 0 524853 525050 -1 1959 0.26262626262626265 198 52 "525050_525472" +BW25113_0503 mnmH 0 525588 526682 -1 2280 0.09406392694063927 1095 103 "tRNA 2-selenouridine synthase and selenophosphate-dependent" +BW25113_0503__5prime mnmH__5prime 0 526683 526880 -1 279 0.07575757575757576 198 15 "tRNA 2-selenouridine synthase and selenophosphate-dependent" +BW25113_0503__3prime mnmH__3prime 0 525390 525587 -1 409 0.12121212121212122 198 24 "tRNA 2-selenouridine synthase and selenophosphate-dependent" +BW25113_0504 allS 0 526751 527677 -1 1688 0.07227615965480043 927 67 "allD operon transcriptional activator" +BW25113_0504__5prime allS__5prime 0 527678 527875 -1 143 0.04040404040404041 198 8 "allD operon transcriptional activator" +BW25113_0504__3prime allS__3prime 0 526553 526750 -1 833 0.13636363636363635 198 27 "allD operon transcriptional activator" +BW25113_0505 allA 0 527907 528389 1 446 0.045548654244306416 483 22 "ureidoglycolate lyase and releasing urea" +BW25113_0505__5prime allA__5prime 0 527709 527906 1 169 0.045454545454545456 198 9 "ureidoglycolate lyase and releasing urea" +BW25113_0505__3prime allA__3prime 0 528390 528587 1 554 0.09595959595959595 198 19 "ureidoglycolate lyase and releasing urea" +BW25113_0506 allR 0 528467 529282 1 2736 0.11519607843137254 816 94 "transcriptional repressor of all and gcl operons; glyoxylate-induced" +BW25113_0506__5prime allR__5prime 0 528269 528466 1 238 0.06060606060606061 198 12 "transcriptional repressor of all and gcl operons; glyoxylate-induced" +BW25113_0506__3prime allR__3prime 0 529283 529480 1 607 0.08080808080808081 198 16 "transcriptional repressor of all and gcl operons; glyoxylate-induced" +BW25113_0507 gcl 0 529372 531153 1 9926 0.1644219977553311 1782 293 "glyoxylate carboligase" +BW25113_0507__5prime gcl__5prime 0 529174 529371 1 396 0.07575757575757576 198 15 "glyoxylate carboligase" +BW25113_0507__3prime gcl__3prime 0 531154 531351 1 1088 0.2222222222222222 198 44 "glyoxylate carboligase" +BW25113_0508 hyi 0 531166 531942 1 6954 0.2767052767052767 777 215 "hydroxypyruvate isomerase" +BW25113_0508__5prime hyi__5prime 0 530968 531165 1 2393 0.398989898989899 198 79 "hydroxypyruvate isomerase" +BW25113_0508__3prime hyi__3prime 0 531943 532140 1 2392 0.3434343434343434 198 68 "hydroxypyruvate isomerase" +BW25113_0509 glxR 0 532042 532920 1 8646 0.30602957906712175 879 269 "tartronate semialdehyde reductase and NADH-dependent" +BW25113_0509__5prime glxR__5prime 0 531844 532041 1 3494 0.2878787878787879 198 57 "tartronate semialdehyde reductase and NADH-dependent" +BW25113_0509__3prime glxR__3prime 0 532921 533118 1 161 0.06060606060606061 198 12 "tartronate semialdehyde reductase and NADH-dependent" +BW25113_0511 ybbW 0 533089 534543 1 19408 0.3532646048109966 1455 514 "putative allantoin transporter" +BW25113_0511__5prime ybbW__5prime 0 532891 533088 1 1163 0.1111111111111111 198 22 "putative allantoin transporter" +BW25113_0511__3prime ybbW__3prime 0 534544 534741 1 1496 0.17676767676767677 198 35 "putative allantoin transporter" +BW25113_0512 allB 0 534603 535964 1 5259 0.13069016152716592 1362 178 "allantoinase" +BW25113_0512__5prime allB__5prime 0 534405 534602 1 794 0.1919191919191919 198 38 "allantoinase" +BW25113_0512__3prime allB__3prime 0 535965 536162 1 520 0.14646464646464646 198 29 "allantoinase" +BW25113_0513 ybbY 0 536021 537322 1 11664 0.22580645161290322 1302 294 "putative uracil/xanthine transporter" +BW25113_0513__5prime ybbY__5prime 0 535823 536020 1 486 0.11616161616161616 198 23 "putative uracil/xanthine transporter" +BW25113_0513__3prime ybbY__3prime 0 537323 537520 1 1265 0.17676767676767677 198 35 "putative uracil/xanthine transporter" +BW25113_0514 glxK 0 537344 538489 1 6046 0.18150087260034903 1146 208 "glycerate kinase II" +BW25113_0514__5prime glxK__5prime 0 537146 537343 1 3779 0.3888888888888889 198 77 "glycerate kinase II" +BW25113_0514__3prime glxK__3prime 0 538490 538687 1 5489 0.494949494949495 198 98 "glycerate kinase II" +538542_538639 538542_538639 0 538543 538639 1 2562 0.5876288659793815 97 57 "538542_538639" +538542_538639__5prime 538542_538639__5prime 0 538345 538542 1 4352 0.42424242424242425 198 84 "538542_538639" +538542_538639__3prime 538542_538639__3prime 0 538640 538837 1 3753 0.398989898989899 198 79 "538542_538639" +BW25113_0515 allE 0 538717 539502 -1 11297 0.3575063613231552 786 281 "S-ureidoglycine aminohydrolase" +BW25113_0515__5prime allE__5prime 0 539503 539700 -1 1896 0.2828282828282828 198 56 "S-ureidoglycine aminohydrolase" +BW25113_0515__3prime allE__3prime 0 538519 538716 -1 5428 0.4797979797979798 198 95 "S-ureidoglycine aminohydrolase" +BW25113_0516 allC 0 539513 540748 -1 10857 0.2928802588996764 1236 362 "allantoate amidohydrolase" +BW25113_0516__5prime allC__5prime 0 540749 540946 -1 635 0.18686868686868688 198 37 "allantoate amidohydrolase" +BW25113_0516__3prime allC__3prime 0 539315 539512 -1 1364 0.2222222222222222 198 44 "allantoate amidohydrolase" +BW25113_0517 allD 0 540770 541819 -1 7336 0.24 1050 252 "ureidoglycolate dehydrogenase" +BW25113_0517__5prime allD__5prime 0 541820 542017 -1 562 0.16161616161616163 198 32 "ureidoglycolate dehydrogenase" +BW25113_0517__3prime allD__3prime 0 540572 540769 -1 1939 0.3686868686868687 198 73 "ureidoglycolate dehydrogenase" +BW25113_0518 fdrA 0 542136 543803 1 4868 0.10671462829736211 1668 178 "putative NAD(P)-binding acyl-CoA synthetase" +BW25113_0518__5prime fdrA__5prime 0 541938 542135 1 3847 0.20202020202020202 198 40 "putative NAD(P)-binding acyl-CoA synthetase" +BW25113_0518__3prime fdrA__3prime 0 543804 544001 1 458 0.10606060606060606 198 21 "putative NAD(P)-binding acyl-CoA synthetase" +BW25113_4572 ylbE 0 543813 545072 1 2454 0.08253968253968254 1260 104 "NO-induced DUF1116 protein" +BW25113_4572__5prime ylbE__5prime 0 543615 543812 1 428 0.05555555555555555 198 11 "NO-induced DUF1116 protein" +BW25113_4572__3prime ylbE__3prime 0 545073 545270 1 626 0.15151515151515152 198 30 "NO-induced DUF1116 protein" +BW25113_0520 ylbF 0 545083 545898 1 2210 0.13602941176470587 816 111 "putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein" +BW25113_0520__5prime ylbF__5prime 0 544885 545082 1 200 0.08080808080808081 198 16 "putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein" +BW25113_0520__3prime ylbF__3prime 0 545899 546096 1 487 0.11616161616161616 198 23 "putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein" +BW25113_0521 ybcF 0 545895 546788 1 2018 0.1040268456375839 894 93 "putative carbonate kinase" +BW25113_0521__5prime ybcF__5prime 0 545697 545894 1 637 0.13131313131313133 198 26 "putative carbonate kinase" +BW25113_0521__3prime ybcF__3prime 0 546789 546986 1 657 0.1111111111111111 198 22 "putative carbonate kinase" +546809_546966 546809_546966 0 546810 546966 1 275 0.06369426751592357 157 10 "546809_546966" +546809_546966__5prime 546809_546966__5prime 0 546612 546809 1 710 0.18686868686868688 198 37 "546809_546966" +546809_546966__3prime 546809_546966__3prime 0 546967 547164 1 594 0.11616161616161616 198 23 "546809_546966" +BW25113_0522 purK 0 546983 548050 -1 2612 0.09269662921348315 1068 99 "N5-carboxyaminoimidazole ribonucleotide synthase" +BW25113_0522__5prime purK__5prime 0 548051 548248 -1 623 0.07575757575757576 198 15 "N5-carboxyaminoimidazole ribonucleotide synthase" +BW25113_0522__3prime purK__3prime 0 546785 546982 -1 696 0.13131313131313133 198 26 "N5-carboxyaminoimidazole ribonucleotide synthase" +BW25113_0523 purE 0 548047 548556 -1 1593 0.10784313725490197 510 55 "N5-carboxyaminoimidazole ribonucleotide mutase" +BW25113_0523__5prime purE__5prime 0 548557 548754 -1 95 0.04040404040404041 198 8 "N5-carboxyaminoimidazole ribonucleotide mutase" +BW25113_0523__3prime purE__3prime 0 547849 548046 -1 75 0.03535353535353535 198 7 "N5-carboxyaminoimidazole ribonucleotide mutase" +BW25113_0524 lpxH 0 548674 549396 -1 13 0.0013831258644536654 723 1 "UDP-2 and 3-diacylglucosamine pyrophosphohydrolase" +BW25113_0524__5prime lpxH__5prime 0 549397 549594 -1 0 0.0 198 0 "UDP-2 and 3-diacylglucosamine pyrophosphohydrolase" +BW25113_0524__3prime lpxH__3prime 0 548476 548673 -1 331 0.09090909090909091 198 18 "UDP-2 and 3-diacylglucosamine pyrophosphohydrolase" +BW25113_0525 ppiB 0 549399 549893 -1 53 0.00404040404040404 495 2 "peptidyl-prolyl cis-trans isomerase B (rotamase B)" +BW25113_0525__5prime ppiB__5prime 0 549894 550091 -1 194 0.050505050505050504 198 10 "peptidyl-prolyl cis-trans isomerase B (rotamase B)" +BW25113_0525__3prime ppiB__3prime 0 549201 549398 -1 0 0.0 198 0 "peptidyl-prolyl cis-trans isomerase B (rotamase B)" +BW25113_0526 cysS 0 550067 551452 1 51 0.005050505050505051 1386 7 "cysteinyl-tRNA synthetase" +BW25113_0526__5prime cysS__5prime 0 549869 550066 1 194 0.050505050505050504 198 10 "cysteinyl-tRNA synthetase" +BW25113_0526__3prime cysS__3prime 0 551453 551650 1 404 0.08080808080808081 198 16 "cysteinyl-tRNA synthetase" +551462_551488 551462_551488 0 551463 551488 1 104 0.11538461538461539 26 3 "551462_551488" +551462_551488__5prime 551462_551488__5prime 0 551265 551462 1 37 0.030303030303030304 198 6 "551462_551488" +551462_551488__3prime 551462_551488__3prime 0 551489 551686 1 520 0.13636363636363635 198 27 "551462_551488" +BW25113_0527 ybcI 0 551488 552009 -1 1807 0.13984674329501914 522 73 "DUF457 family inner membrane protein" +BW25113_0527__5prime ybcI__5prime 0 552010 552207 -1 371 0.12121212121212122 198 24 "DUF457 family inner membrane protein" +BW25113_0527__3prime ybcI__3prime 0 551290 551487 -1 119 0.04040404040404041 198 8 "DUF457 family inner membrane protein" +BW25113_0528 ybcJ 0 552117 552329 -1 317 0.08450704225352113 213 18 "ribosome-associated protein; putative RNA-binding protein" +BW25113_0528__5prime ybcJ__5prime 0 552330 552527 -1 154 0.04040404040404041 198 8 "ribosome-associated protein; putative RNA-binding protein" +BW25113_0528__3prime ybcJ__3prime 0 551919 552116 -1 488 0.1414141414141414 198 28 "ribosome-associated protein; putative RNA-binding protein" +BW25113_0529 folD 0 552331 553197 -1 154 0.00922722029988466 867 8 "bifunctional 5 and 10-methylene-tetrahydrofolate dehydrogenase/ 5 and 10-methylene-tetrahydrofolate cyclohydrolase" +BW25113_0529__5prime folD__5prime 0 553198 553395 -1 1121 0.1717171717171717 198 34 "bifunctional 5 and 10-methylene-tetrahydrofolate dehydrogenase/ 5 and 10-methylene-tetrahydrofolate cyclohydrolase" +BW25113_0529__3prime folD__3prime 0 552133 552330 -1 283 0.0707070707070707 198 14 "bifunctional 5 and 10-methylene-tetrahydrofolate dehydrogenase/ 5 and 10-methylene-tetrahydrofolate cyclohydrolase" +BW25113_0530 sfmA 0 553668 554210 1 7523 0.43830570902394106 543 238 "FimA homolog" +BW25113_0530__5prime sfmA__5prime 0 553470 553667 1 147 0.06565656565656566 198 13 "FimA homolog" +BW25113_0530__3prime sfmA__3prime 0 554211 554408 1 535 0.1919191919191919 198 38 "FimA homolog" +BW25113_0531 sfmC 0 554430 555122 1 9100 0.3722943722943723 693 258 "putative periplasmic pilus chaperone" +BW25113_0531__5prime sfmC__5prime 0 554232 554429 1 571 0.20707070707070707 198 41 "putative periplasmic pilus chaperone" +BW25113_0531__3prime sfmC__3prime 0 555123 555320 1 2170 0.2222222222222222 198 44 "putative periplasmic pilus chaperone" +BW25113_0532 sfmD 0 555153 557756 1 38571 0.3317972350230415 2604 864 "putative outer membrane export usher protein" +BW25113_0532__5prime sfmD__5prime 0 554955 555152 1 3672 0.4444444444444444 198 88 "putative outer membrane export usher protein" +BW25113_0532__3prime sfmD__3prime 0 557757 557954 1 1238 0.2878787878787879 198 57 "putative outer membrane export usher protein" +BW25113_0532 sfmD 0 557551 557700 1 2583 0.4666666666666667 150 70 "557550_557700" +BW25113_0532__5prime sfmD__5prime 0 557353 557550 1 2456 0.2878787878787879 198 57 "557550_557700" +BW25113_0532__3prime sfmD__3prime 0 557701 557898 1 1603 0.25757575757575757 198 51 "557550_557700" +BW25113_0533 sfmH 0 557792 558775 1 9379 0.2764227642276423 984 272 "FimA homolog" +BW25113_0533__5prime sfmH__5prime 0 557594 557791 1 2985 0.35858585858585856 198 71 "FimA homolog" +BW25113_0533__3prime sfmH__3prime 0 558776 558973 1 1431 0.22727272727272727 198 45 "FimA homolog" +BW25113_0534 sfmF 0 558786 559301 1 6122 0.2751937984496124 516 142 "FimA homolog" +BW25113_0534__5prime sfmF__5prime 0 558588 558785 1 847 0.18686868686868688 198 37 "FimA homolog" +BW25113_0534__3prime sfmF__3prime 0 559302 559499 1 451 0.13636363636363635 198 27 "FimA homolog" +BW25113_0535 sfmZ 0 559304 559936 -1 4918 0.21169036334913113 633 134 "response regulator family protein" +BW25113_0535__5prime sfmZ__5prime 0 559937 560134 -1 1585 0.2828282828282828 198 56 "response regulator family protein" +BW25113_0535__3prime sfmZ__3prime 0 559106 559303 -1 3567 0.3333333333333333 198 66 "response regulator family protein" +BW25113_0536 argU 0 560179 560255 1 25 0.05194805194805195 77 4 "tRNA-Arg" +BW25113_0536__5prime argU__5prime 0 559981 560178 1 1068 0.2676767676767677 198 53 "tRNA-Arg" +BW25113_0536__3prime argU__3prime 0 560256 560453 1 984 0.12121212121212122 198 24 "tRNA-Arg" +560257_581559 560257_581559 0 560258 581559 1 154653 0.23213782743404376 21302 4945 "560257_581559" +560257_581559__5prime 560257_581559__5prime 0 560060 560257 1 660 0.18181818181818182 198 36 "560257_581559" +560257_581559__3prime 560257_581559__3prime 0 581560 581757 1 1221 0.2474747474747475 198 49 "560257_581559" +BW25113_0537 intD 0 560271 561434 -1 3590 0.13659793814432988 1164 159 "DLP12 prophage; putative phage integrase" +BW25113_0537__5prime intD__5prime 0 561435 561632 -1 2095 0.19696969696969696 198 39 "DLP12 prophage; putative phage integrase" +BW25113_0537__3prime intD__3prime 0 560073 560270 -1 625 0.17676767676767677 198 35 "DLP12 prophage; putative phage integrase" +BW25113_4633 xisD 0 561314 561535 -1 2036 0.21621621621621623 222 48 "561313_561535" +BW25113_4633__5prime xisD__5prime 0 561536 561733 -1 648 0.1414141414141414 198 28 "561313_561535" +BW25113_4633__3prime xisD__3prime 0 561116 561313 -1 647 0.15656565656565657 198 31 "561313_561535" +BW25113_0539 exoD 0 561554 561832 -1 811 0.14336917562724014 279 40 "561553_561832" +BW25113_0539__5prime exoD__5prime 0 561833 562030 -1 1031 0.13131313131313133 198 26 "561553_561832" +BW25113_0539__3prime exoD__3prime 0 561356 561553 -1 2020 0.1919191919191919 198 38 "561553_561832" +BW25113_4508 peaD 0 561832 562143 1 1127 0.11538461538461539 312 36 "561831_562143" +BW25113_4508__5prime peaD__5prime 0 561634 561831 1 611 0.16161616161616163 198 32 "561831_562143" +BW25113_4508__3prime peaD__3prime 0 562144 562341 1 426 0.17676767676767677 198 35 "561831_562143" +BW25113_0542 renD 0 562140 563703 1 8957 0.2774936061381074 1564 434 "562139_563703" +BW25113_0542__5prime renD__5prime 0 561942 562139 1 923 0.13131313131313133 198 26 "562139_563703" +BW25113_0542__3prime renD__3prime 0 563704 563901 1 3400 0.4393939393939394 198 87 "562139_563703" +BW25113_0540 insE1 0 562298 562597 1 636 0.17333333333333334 300 52 "IS3 transposase A" +BW25113_0540__5prime insE1__5prime 0 562100 562297 1 360 0.14646464646464646 198 29 "IS3 transposase A" +BW25113_0540__3prime insE1__3prime 0 562598 562795 1 592 0.2222222222222222 198 44 "IS3 transposase A" +BW25113_0541 insF1 0 562594 563460 1 3978 0.25720876585928487 867 223 "IS3 transposase B" +BW25113_0541__5prime insF1__5prime 0 562396 562593 1 313 0.15151515151515152 198 30 "IS3 transposase B" +BW25113_0541__3prime insF1__3prime 0 563461 563658 1 3408 0.5151515151515151 198 102 "IS3 transposase B" +BW25113_0543 emrE 0 563771 564103 1 5901 0.40540540540540543 333 135 "DLP12 prophage; multidrug resistance protein" +BW25113_0543__5prime emrE__5prime 0 563573 563770 1 2135 0.48484848484848486 198 96 "DLP12 prophage; multidrug resistance protein" +BW25113_0543__3prime emrE__3prime 0 564104 564301 1 73 0.025252525252525252 198 5 "DLP12 prophage; multidrug resistance protein" +BW25113_0544 ybcK 0 564358 565884 1 9984 0.2174197773411919 1527 332 "DLP12 prophage; putative recombinase" +BW25113_0544__5prime ybcK__5prime 0 564160 564357 1 528 0.15151515151515152 198 30 "DLP12 prophage; putative recombinase" +BW25113_0544__3prime ybcK__3prime 0 565885 566082 1 950 0.22727272727272727 198 45 "DLP12 prophage; putative recombinase" +BW25113_0545 ybcL 0 566349 566900 1 10817 0.42391304347826086 552 234 "inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein and UPF0098 family" +BW25113_0545__5prime ybcL__5prime 0 566151 566348 1 554 0.15151515151515152 198 30 "inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein and UPF0098 family" +BW25113_0545__3prime ybcL__3prime 0 566901 567098 1 1630 0.29797979797979796 198 59 "inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein and UPF0098 family" +566776_568034 566776_568034 0 566777 568034 1 9832 0.26947535771065184 1258 339 "566776_568034" +566776_568034__5prime 566776_568034__5prime 0 566579 566776 1 4764 0.5202020202020202 198 103 "566776_568034" +566776_568034__3prime 566776_568034__3prime 0 568035 568232 1 391 0.09090909090909091 198 18 "566776_568034" +BW25113_0546 ybcM 0 566910 567707 1 3828 0.22055137844611528 798 176 "DLP12 prophage; putative DNA-binding transcriptional regulator" +BW25113_0546__5prime ybcM__5prime 0 566712 566909 1 2728 0.4090909090909091 198 81 "DLP12 prophage; putative DNA-binding transcriptional regulator" +BW25113_0546__3prime ybcM__3prime 0 567708 567905 1 1683 0.3181818181818182 198 63 "DLP12 prophage; putative DNA-binding transcriptional regulator" +BW25113_4588 ylcH 0 567824 567925 1 2102 0.4117647058823529 102 42 "uncharacterized protein and DLP12 prophage" +BW25113_4588__5prime ylcH__5prime 0 567626 567823 1 1037 0.23737373737373738 198 47 "uncharacterized protein and DLP12 prophage" +BW25113_4588__3prime ylcH__3prime 0 567926 568123 1 1649 0.20707070707070707 198 41 "uncharacterized protein and DLP12 prophage" +BW25113_0547 ybcN 0 567922 568377 1 2619 0.1425438596491228 456 65 "DLP12 prophage; uncharacterized protein" +BW25113_0547__5prime ybcN__5prime 0 567724 567921 1 2766 0.37373737373737376 198 74 "DLP12 prophage; uncharacterized protein" +BW25113_0547__3prime ybcN__3prime 0 568378 568575 1 1368 0.1717171717171717 198 34 "DLP12 prophage; uncharacterized protein" +BW25113_0548 ninE 0 568377 568547 1 1368 0.19883040935672514 171 34 "DLP12 prophage; conserved protein" +BW25113_0548__5prime ninE__5prime 0 568179 568376 1 686 0.08585858585858586 198 17 "DLP12 prophage; conserved protein" +BW25113_0548__3prime ninE__3prime 0 568548 568745 1 536 0.07575757575757576 198 15 "DLP12 prophage; conserved protein" +BW25113_0549 ybcO 0 568540 568830 1 1081 0.12371134020618557 291 36 "DLP12 prophage; uncharacterized protein" +BW25113_0549__5prime ybcO__5prime 0 568342 568539 1 1322 0.1717171717171717 198 34 "DLP12 prophage; uncharacterized protein" +BW25113_0549__3prime ybcO__3prime 0 568831 569028 1 887 0.2222222222222222 198 44 "DLP12 prophage; uncharacterized protein" +BW25113_0550 rusA 0 568827 569189 1 1797 0.2231404958677686 363 81 "DLP12 prophage; endonuclease RUS" +BW25113_0550__5prime rusA__5prime 0 568629 568826 1 788 0.12121212121212122 198 24 "DLP12 prophage; endonuclease RUS" +BW25113_0550__3prime rusA__3prime 0 569190 569387 1 2006 0.3181818181818182 198 63 "DLP12 prophage; endonuclease RUS" +BW25113_4509 ylcG 0 569186 569326 1 1626 0.3404255319148936 141 48 "uncharacterized protein and DLP12 prophage" +BW25113_4509__5prime ylcG__5prime 0 568988 569185 1 1042 0.21717171717171718 198 43 "uncharacterized protein and DLP12 prophage" +BW25113_4509__3prime ylcG__3prime 0 569327 569524 1 2214 0.29797979797979796 198 59 "uncharacterized protein and DLP12 prophage" +BW25113_0551 quuD 0 569412 569795 1 4441 0.3203125 384 123 "DLP12 prophage; putative antitermination protein" +BW25113_0551__5prime quuD__5prime 0 569214 569411 1 2095 0.3181818181818182 198 63 "DLP12 prophage; putative antitermination protein" +BW25113_0551__3prime quuD__3prime 0 569796 569993 1 2016 0.21212121212121213 198 42 "DLP12 prophage; putative antitermination protein" +BW25113_0553 nmpC 0 569985 572281 -1 16108 0.24684370918589466 2297 567 "569984_572281" +BW25113_0553__5prime nmpC__5prime 0 572282 572479 -1 220 0.04040404040404041 198 8 "569984_572281" +BW25113_0553__3prime nmpC__3prime 0 569787 569984 -1 1101 0.18686868686868688 198 37 "569984_572281" +570046_571241 570046_571241 0 570047 571241 -1 2561 0.17656903765690377 1195 211 "570046_571241" +570046_571241__5prime 570046_571241__5prime 0 571242 571439 -1 1476 0.2828282828282828 198 56 "570046_571241" +570046_571241__3prime 570046_571241__3prime 0 569849 570046 -1 5034 0.4090909090909091 198 81 "570046_571241" +BW25113_0552 insH1 0 570193 571209 -1 2222 0.18289085545722714 1017 186 "IS5 transposase and trans-activator" +BW25113_0552__5prime insH1__5prime 0 571210 571407 -1 1562 0.30808080808080807 198 61 "IS5 transposase and trans-activator" +BW25113_0552__3prime insH1__3prime 0 569995 570192 -1 3203 0.26262626262626265 198 52 "IS5 transposase and trans-activator" +BW25113_0554 essD 0 572854 573069 1 3199 0.4305555555555556 216 93 "DLP12 prophage; putative phage lysis protein" +BW25113_0554__5prime essD__5prime 0 572656 572853 1 3450 0.3434343434343434 198 68 "DLP12 prophage; putative phage lysis protein" +BW25113_0554__3prime essD__3prime 0 573070 573267 1 2888 0.398989898989899 198 79 "DLP12 prophage; putative phage lysis protein" +BW25113_0555 rrrD 0 573069 573566 1 5231 0.3293172690763052 498 164 "DLP12 prophage; putative lysozyme" +BW25113_0555__5prime rrrD__5prime 0 572871 573068 1 3121 0.45454545454545453 198 90 "DLP12 prophage; putative lysozyme" +BW25113_0555__3prime rrrD__3prime 0 573567 573764 1 1657 0.2828282828282828 198 56 "DLP12 prophage; putative lysozyme" +BW25113_0556 rzpD 0 573563 574024 1 5010 0.3528138528138528 462 163 "DLP12 prophage; putative murein endopeptidase" +BW25113_0556__5prime rzpD__5prime 0 573365 573562 1 1458 0.29797979797979796 198 59 "DLP12 prophage; putative murein endopeptidase" +BW25113_0556__3prime rzpD__3prime 0 574025 574222 1 2096 0.25252525252525254 198 50 "DLP12 prophage; putative murein endopeptidase" +BW25113_4510 rzoD 0 573783 573965 1 2398 0.4098360655737705 183 75 "DLP12 prophage; putative lipoprotein" +BW25113_4510__5prime rzoD__5prime 0 573585 573782 1 1051 0.24242424242424243 198 48 "DLP12 prophage; putative lipoprotein" +BW25113_4510__3prime rzoD__3prime 0 573966 574163 1 1982 0.32323232323232326 198 64 "DLP12 prophage; putative lipoprotein" +BW25113_4510 rzoD 0 573850 573867 1 487 0.7222222222222222 18 13 "573849_573867" +BW25113_4510__5prime rzoD__5prime 0 573652 573849 1 1046 0.2222222222222222 198 44 "573849_573867" +BW25113_4510__3prime rzoD__3prime 0 573868 574065 1 3106 0.46464646464646464 198 92 "573849_573867" +BW25113_0557 borD 0 574056 574349 -1 5212 0.37755102040816324 294 111 "DLP12 prophage; putative lipoprotein" +BW25113_0557__5prime borD__5prime 0 574350 574547 -1 2733 0.2727272727272727 198 54 "DLP12 prophage; putative lipoprotein" +BW25113_0557__3prime borD__3prime 0 573858 574055 -1 3406 0.4898989898989899 198 97 "DLP12 prophage; putative lipoprotein" +BW25113_0558 ybcV 0 574640 575050 -1 1192 0.145985401459854 411 60 "DLP12 prophage; uncharacterized protein" +BW25113_0558__5prime ybcV__5prime 0 575051 575248 -1 2154 0.31313131313131315 198 62 "DLP12 prophage; uncharacterized protein" +BW25113_0558__3prime ybcV__3prime 0 574442 574639 -1 4856 0.48484848484848486 198 96 "DLP12 prophage; uncharacterized protein" +575114_575278 575114_575278 0 575115 575278 1 1781 0.31097560975609756 164 51 "575114_575278" +575114_575278__5prime 575114_575278__5prime 0 574917 575114 1 985 0.16666666666666666 198 33 "575114_575278" +575114_575278__3prime 575114_575278__3prime 0 575279 575476 1 1341 0.31313131313131315 198 62 "575114_575278" +BW25113_0559 ybcW 0 575336 575542 1 1943 0.3671497584541063 207 76 "DLP12 prophage; uncharacterized protein" +BW25113_0559__5prime ybcW__5prime 0 575138 575335 1 1821 0.31313131313131315 198 62 "DLP12 prophage; uncharacterized protein" +BW25113_0559__3prime ybcW__3prime 0 575543 575740 1 2279 0.3181818181818182 198 63 "DLP12 prophage; uncharacterized protein" +BW25113_4589 ylcI 0 575707 575901 -1 808 0.13846153846153847 195 27 "DUF3950 family protein and DLP12 prophage" +BW25113_4589__5prime ylcI__5prime 0 575902 576099 -1 455 0.12626262626262627 198 25 "DUF3950 family protein and DLP12 prophage" +BW25113_4589__3prime ylcI__3prime 0 575509 575706 -1 2271 0.37373737373737376 198 74 "DUF3950 family protein and DLP12 prophage" +BW25113_0560 nohD 0 576290 576835 1 763 0.054945054945054944 546 30 "DLP12 prophage; DNA packaging protein" +BW25113_0560__5prime nohD__5prime 0 576092 576289 1 17 0.010101010101010102 198 2 "DLP12 prophage; DNA packaging protein" +BW25113_0560__3prime nohD__3prime 0 576836 577033 1 673 0.14646464646464646 198 29 "DLP12 prophage; DNA packaging protein" +BW25113_4634 aaaD 0 576810 577118 1 916 0.14563106796116504 309 45 "576809_577118" +BW25113_4634__5prime aaaD__5prime 0 576612 576809 1 112 0.050505050505050504 198 10 "576809_577118" +BW25113_4634__3prime aaaD__3prime 0 577119 577316 1 819 0.2222222222222222 198 44 "576809_577118" +BW25113_0561 tfaD 0 577116 577553 1 1508 0.1963470319634703 438 86 "577115_577553" +BW25113_0561__5prime tfaD__5prime 0 576918 577115 1 557 0.13131313131313133 198 26 "577115_577553" +BW25113_0561__3prime tfaD__3prime 0 577554 577751 1 961 0.21717171717171718 198 43 "577115_577553" +BW25113_0562 ybcY 0 577608 578262 -1 5784 0.2641221374045801 655 173 "577607_578262" +BW25113_0562__5prime ybcY__5prime 0 578263 578460 -1 2256 0.3484848484848485 198 69 "577607_578262" +BW25113_0562__3prime ybcY__3prime 0 577410 577607 -1 901 0.21212121212121213 198 42 "577607_578262" +BW25113_0563 tfaX 0 578409 578591 1 4732 0.47540983606557374 183 87 "578408_578591" +BW25113_0563__5prime tfaX__5prime 0 578211 578408 1 1080 0.24242424242424243 198 48 "578408_578591" +BW25113_0563__3prime tfaX__3prime 0 578592 578789 1 253 0.08585858585858586 198 17 "578408_578591" +BW25113_0564 appY 0 579137 579886 1 1985 0.15333333333333332 750 115 "global transcriptional activator; DLP12 prophage" +BW25113_0564__5prime appY__5prime 0 578939 579136 1 211 0.030303030303030304 198 6 "global transcriptional activator; DLP12 prophage" +BW25113_0564__3prime appY__3prime 0 579887 580084 1 82 0.03535353535353535 198 7 "global transcriptional activator; DLP12 prophage" +BW25113_0565 ompT 0 580136 581089 -1 15575 0.3909853249475891 954 373 "DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)" +BW25113_0565__5prime ompT__5prime 0 581090 581287 -1 209 0.0707070707070707 198 14 "DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)" +BW25113_0565__3prime ompT__3prime 0 579938 580135 -1 191 0.07575757575757576 198 15 "DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)" +BW25113_4635 pauD 0 581513 581557 1 94 0.24444444444444444 45 11 "tRNA-OTHER" +BW25113_4635__5prime pauD__5prime 0 581315 581512 1 516 0.16161616161616163 198 32 "tRNA-OTHER" +BW25113_4635__3prime pauD__3prime 0 581558 581755 1 1261 0.25252525252525254 198 50 "tRNA-OTHER" +BW25113_0566 envY 0 581603 582364 -1 5300 0.20603674540682415 762 157 "porin thermoregulatory transcriptional activator" +BW25113_0566__5prime envY__5prime 0 582365 582562 -1 631 0.16161616161616163 198 32 "porin thermoregulatory transcriptional activator" +BW25113_0566__3prime envY__3prime 0 581405 581602 -1 840 0.2474747474747475 198 49 "porin thermoregulatory transcriptional activator" +BW25113_0567 ybcH 0 582547 583437 -1 2287 0.09427609427609428 891 84 "PRK09936 family protein" +BW25113_0567__5prime ybcH__5prime 0 583438 583635 -1 740 0.10606060606060606 198 21 "PRK09936 family protein" +BW25113_0567__3prime ybcH__3prime 0 582349 582546 -1 794 0.18686868686868688 198 37 "PRK09936 family protein" +BW25113_0568 nfrA 0 583438 586410 -1 7330 0.10662630339724184 2973 317 "bacteriophage N4 receptor and outer membrane subunit" +BW25113_0568__5prime nfrA__5prime 0 586411 586608 -1 1633 0.24242424242424243 198 48 "bacteriophage N4 receptor and outer membrane subunit" +BW25113_0568__3prime nfrA__3prime 0 583240 583437 -1 815 0.10101010101010101 198 20 "bacteriophage N4 receptor and outer membrane subunit" +BW25113_0569 nfrB 0 586397 588634 -1 7057 0.1063449508489723 2238 238 "bacteriophage N4 receptor and inner membrane subunit" +BW25113_0569__5prime nfrB__5prime 0 588635 588832 -1 0 0.0 198 0 "bacteriophage N4 receptor and inner membrane subunit" +BW25113_0569__3prime nfrB__3prime 0 586199 586396 -1 1203 0.21717171717171718 198 43 "bacteriophage N4 receptor and inner membrane subunit" +BW25113_0570 cusS 0 588784 590226 -1 3171 0.0990990990990991 1443 143 "sensory histidine kinase in two-component regulatory system with CusR and senses copper ions" +BW25113_0570__5prime cusS__5prime 0 590227 590424 -1 525 0.11616161616161616 198 23 "sensory histidine kinase in two-component regulatory system with CusR and senses copper ions" +BW25113_0570__3prime cusS__3prime 0 588586 588783 -1 52 0.010101010101010102 198 2 "sensory histidine kinase in two-component regulatory system with CusR and senses copper ions" +BW25113_0571 cusR 0 590216 590899 -1 1070 0.08187134502923976 684 56 "response regulator in two-component regulatory system with CusS" +BW25113_0571__5prime cusR__5prime 0 590900 591097 -1 124 0.03535353535353535 198 7 "response regulator in two-component regulatory system with CusS" +BW25113_0571__3prime cusR__3prime 0 590018 590215 -1 445 0.1414141414141414 198 28 "response regulator in two-component regulatory system with CusS" +BW25113_0572 cusC 0 591056 592429 1 7465 0.22343522561863174 1374 307 "copper/silver efflux system and outer membrane component" +BW25113_0572__5prime cusC__5prime 0 590858 591055 1 136 0.045454545454545456 198 9 "copper/silver efflux system and outer membrane component" +BW25113_0572__3prime cusC__3prime 0 592430 592627 1 1584 0.3686868686868687 198 73 "copper/silver efflux system and outer membrane component" +BW25113_0573 cusF 0 592587 592919 1 6073 0.35435435435435436 333 118 "periplasmic copper-and silver-binding protein" +BW25113_0573__5prime cusF__5prime 0 592389 592586 1 1597 0.3484848484848485 198 69 "periplasmic copper-and silver-binding protein" +BW25113_0573__3prime cusF__3prime 0 592920 593117 1 608 0.13131313131313133 198 26 "periplasmic copper-and silver-binding protein" +BW25113_0574 cusB 0 592935 594158 1 3087 0.1111111111111111 1224 136 "copper/silver efflux system and membrane fusion protein" +BW25113_0574__5prime cusB__5prime 0 592737 592934 1 4350 0.31313131313131315 198 62 "copper/silver efflux system and membrane fusion protein" +BW25113_0574__3prime cusB__3prime 0 594159 594356 1 705 0.15151515151515152 198 30 "copper/silver efflux system and membrane fusion protein" +BW25113_0575 cusA 0 594170 597313 1 5362 0.0846055979643766 3144 266 "copper/silver efflux system and membrane component" +BW25113_0575__5prime cusA__5prime 0 593972 594169 1 428 0.08585858585858586 198 17 "copper/silver efflux system and membrane component" +BW25113_0575__3prime cusA__3prime 0 597314 597511 1 200 0.09090909090909091 198 18 "copper/silver efflux system and membrane component" +BW25113_0576 pheP 0 597415 598791 1 4352 0.12200435729847495 1377 168 "phenylalanine transporter" +BW25113_0576__5prime pheP__5prime 0 597217 597414 1 208 0.08080808080808081 198 16 "phenylalanine transporter" +BW25113_0576__3prime pheP__3prime 0 598792 598989 1 2378 0.29797979797979796 198 59 "phenylalanine transporter" +BW25113_0577 ybdG 0 598872 600119 -1 15910 0.3405448717948718 1248 425 "mechanosensitive channel protein and miniconductance" +BW25113_0577__5prime ybdG__5prime 0 600120 600317 -1 2726 0.32323232323232326 198 64 "mechanosensitive channel protein and miniconductance" +BW25113_0577__3prime ybdG__3prime 0 598674 598871 -1 2904 0.3838383838383838 198 76 "mechanosensitive channel protein and miniconductance" +BW25113_0578 nfsB 0 600227 600880 -1 3183 0.1559633027522936 654 102 "dihydropteridine reductase and NAD(P)H-dependent and oxygen-insensitive" +BW25113_0578__5prime nfsB__5prime 0 600881 601078 -1 263 0.06565656565656566 198 13 "dihydropteridine reductase and NAD(P)H-dependent and oxygen-insensitive" +BW25113_0578__3prime nfsB__3prime 0 600029 600226 -1 2763 0.3787878787878788 198 75 "dihydropteridine reductase and NAD(P)H-dependent and oxygen-insensitive" +BW25113_0579 ybdF 0 600974 601342 -1 688 0.12466124661246612 369 46 "DUF419 family protein" +BW25113_0579__5prime ybdF__5prime 0 601343 601540 -1 276 0.05555555555555555 198 11 "DUF419 family protein" +BW25113_0579__3prime ybdF__3prime 0 600776 600973 -1 287 0.10101010101010101 198 20 "DUF419 family protein" +BW25113_0580 ybdJ 0 601407 601655 -1 772 0.08433734939759036 249 21 "DUF1158 family putative inner membrane protein" +BW25113_0580__5prime ybdJ__5prime 0 601656 601853 -1 179 0.05555555555555555 198 11 "DUF1158 family putative inner membrane protein" +BW25113_0580__3prime ybdJ__3prime 0 601209 601406 -1 272 0.09090909090909091 198 18 "DUF1158 family putative inner membrane protein" +BW25113_0581 ybdK 0 601721 602839 -1 2313 0.10723860589812333 1119 120 "weak gamma-glutamyl:cysteine ligase" +BW25113_0581__5prime ybdK__5prime 0 602840 603037 -1 587 0.1111111111111111 198 22 "weak gamma-glutamyl:cysteine ligase" +BW25113_0581__3prime ybdK__3prime 0 601523 601720 -1 750 0.08080808080808081 198 16 "weak gamma-glutamyl:cysteine ligase" +BW25113_4700 sokE 0 603190 603248 1 299 0.2711864406779661 59 16 "sRNA at remnant mokE/hokE locus" +BW25113_4700__5prime sokE__5prime 0 602992 603189 1 310 0.06060606060606061 198 12 "sRNA at remnant mokE/hokE locus" +BW25113_4700__3prime sokE__3prime 0 603249 603446 1 573 0.10606060606060606 198 21 "sRNA at remnant mokE/hokE locus" +BW25113_4415 hokE 0 603292 603444 1 495 0.11764705882352941 153 18 "toxic polypeptide and small" +BW25113_4415__5prime hokE__5prime 0 603094 603291 1 577 0.12626262626262627 198 25 "toxic polypeptide and small" +BW25113_4415__3prime hokE__3prime 0 603445 603642 1 420 0.16161616161616163 198 32 "toxic polypeptide and small" +BW25113_0582 insL1 0 603521 604633 1 2104 0.14824797843665768 1113 165 "IS186 transposase" +BW25113_0582__5prime insL1__5prime 0 603323 603520 1 540 0.14646464646464646 198 29 "IS186 transposase" +BW25113_0582__3prime insL1__3prime 0 604634 604831 1 667 0.21717171717171718 198 43 "IS186 transposase" +BW25113_0583 entD 0 604915 605535 -1 1762 0.10950080515297907 621 68 "phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex" +BW25113_0583__5prime entD__5prime 0 605536 605733 -1 542 0.1414141414141414 198 28 "phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex" +BW25113_0583__3prime entD__3prime 0 604717 604914 -1 564 0.19696969696969696 198 39 "phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex" +605572_605670 605572_605670 0 605573 605670 1 134 0.11224489795918367 98 11 "605572_605670" +605572_605670__5prime 605572_605670__5prime 0 605375 605572 1 625 0.09595959595959595 198 19 "605572_605670" +605572_605670__3prime 605572_605670__3prime 0 605671 605868 1 966 0.16666666666666666 198 33 "605572_605670" +BW25113_0584 fepA 0 605710 607950 -1 4906 0.10977242302543508 2241 246 "iron-enterobactin outer membrane transporter" +BW25113_0584__5prime fepA__5prime 0 607951 608148 -1 118 0.050505050505050504 198 10 "iron-enterobactin outer membrane transporter" +BW25113_0584__3prime fepA__3prime 0 605512 605709 -1 301 0.09090909090909091 198 18 "iron-enterobactin outer membrane transporter" +608006_609351 608006_609351 0 608007 609351 1 1454 0.06319702602230483 1345 85 "608006_609351" +608006_609351__5prime 608006_609351__5prime 0 607809 608006 1 176 0.08585858585858586 198 17 "608006_609351" +608006_609351__3prime 608006_609351__3prime 0 609352 609549 1 319 0.08080808080808081 198 16 "608006_609351" +BW25113_0585 fes 0 608193 609395 1 1462 0.0714879467996675 1203 86 "enterobactin/ferric enterobactin esterase" +BW25113_0585__5prime fes__5prime 0 607995 608192 1 36 0.025252525252525252 198 5 "enterobactin/ferric enterobactin esterase" +BW25113_0585__3prime fes__3prime 0 609396 609593 1 525 0.13636363636363635 198 27 "enterobactin/ferric enterobactin esterase" +BW25113_4511 ybdZ 0 609398 609616 1 564 0.1324200913242009 219 29 "stimulator of EntF adenylation activity and MbtH-like" +BW25113_4511__5prime ybdZ__5prime 0 609200 609397 1 125 0.04040404040404041 198 8 "stimulator of EntF adenylation activity and MbtH-like" +BW25113_4511__3prime ybdZ__3prime 0 609617 609814 1 480 0.10101010101010101 198 20 "stimulator of EntF adenylation activity and MbtH-like" +BW25113_0586 entF 0 609613 613494 1 13170 0.11488923235445647 3882 446 "enterobactin synthase multienzyme complex component and ATP-dependent" +BW25113_0586__5prime entF__5prime 0 609415 609612 1 490 0.11616161616161616 198 23 "enterobactin synthase multienzyme complex component and ATP-dependent" +BW25113_0586__3prime entF__3prime 0 613495 613692 1 593 0.11616161616161616 198 23 "enterobactin synthase multienzyme complex component and ATP-dependent" +BW25113_0587 fepE 0 613710 614843 1 8619 0.23633156966490299 1134 268 "regulator of length of O-antigen component of lipopolysaccharide chains" +BW25113_0587__5prime fepE__5prime 0 613512 613709 1 1041 0.16666666666666666 198 33 "regulator of length of O-antigen component of lipopolysaccharide chains" +BW25113_0587__3prime fepE__3prime 0 614844 615041 1 90 0.045454545454545456 198 9 "regulator of length of O-antigen component of lipopolysaccharide chains" +BW25113_0588 fepC 0 614840 615655 -1 562 0.056372549019607844 816 46 "iron-enterobactin transporter subunit" +BW25113_0588__5prime fepC__5prime 0 615656 615853 -1 115 0.030303030303030304 198 6 "iron-enterobactin transporter subunit" +BW25113_0588__3prime fepC__3prime 0 614642 614839 -1 1754 0.25252525252525254 198 50 "iron-enterobactin transporter subunit" +BW25113_0589 fepG 0 615652 616644 -1 386 0.023162134944612285 993 23 "iron-enterobactin transporter subunit" +BW25113_0589__5prime fepG__5prime 0 616645 616842 -1 44 0.020202020202020204 198 4 "iron-enterobactin transporter subunit" +BW25113_0589__3prime fepG__3prime 0 615454 615651 -1 131 0.05555555555555555 198 11 "iron-enterobactin transporter subunit" +BW25113_0590 fepD 0 616641 617645 -1 771 0.06467661691542288 1005 65 "iron-enterobactin transporter subunit" +BW25113_0590__5prime fepD__5prime 0 617646 617843 -1 33 0.010101010101010102 198 2 "iron-enterobactin transporter subunit" +BW25113_0590__3prime fepD__3prime 0 616443 616640 -1 74 0.010101010101010102 198 2 "iron-enterobactin transporter subunit" +BW25113_0591 entS 0 617756 619006 1 2655 0.09192645883293366 1251 115 "enterobactin exporter and iron-regulated" +BW25113_0591__5prime entS__5prime 0 617558 617755 1 136 0.03535353535353535 198 7 "enterobactin exporter and iron-regulated" +BW25113_0591__3prime entS__3prime 0 619007 619204 1 180 0.06565656565656566 198 13 "enterobactin exporter and iron-regulated" +BW25113_0592 fepB 0 619010 619966 -1 531 0.047021943573667714 957 45 "iron-enterobactin transporter subunit" +BW25113_0592__5prime fepB__5prime 0 619967 620164 -1 1566 0.21717171717171718 198 43 "iron-enterobactin transporter subunit" +BW25113_0592__3prime fepB__3prime 0 618812 619009 -1 300 0.050505050505050504 198 10 "iron-enterobactin transporter subunit" +BW25113_0593 entC 0 620341 621516 1 2937 0.0977891156462585 1176 115 "isochorismate synthase 1" +BW25113_0593__5prime entC__5prime 0 620143 620340 1 88 0.04040404040404041 198 8 "isochorismate synthase 1" +BW25113_0593__3prime entC__3prime 0 621517 621714 1 567 0.09595959595959595 198 19 "isochorismate synthase 1" +BW25113_0594 entE 0 621526 623136 1 3465 0.10614525139664804 1611 171 "2 and 3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex" +BW25113_0594__5prime entE__5prime 0 621328 621525 1 895 0.12121212121212122 198 24 "2 and 3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex" +BW25113_0594__3prime entE__3prime 0 623137 623334 1 243 0.09090909090909091 198 18 "2 and 3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex" +BW25113_0595 entB 0 623150 624007 1 1641 0.09557109557109557 858 82 "isochorismatase" +BW25113_0595__5prime entB__5prime 0 622952 623149 1 461 0.10101010101010101 198 20 "isochorismatase" +BW25113_0595__3prime entB__3prime 0 624008 624205 1 308 0.07575757575757576 198 15 "isochorismatase" +BW25113_0596 entA 0 624007 624753 1 1300 0.09772423025435073 747 73 "2 and 3-dihydro-2 and 3-dihydroxybenzoate dehydrogenase" +BW25113_0596__5prime entA__5prime 0 623809 624006 1 268 0.06565656565656566 198 13 "2 and 3-dihydro-2 and 3-dihydroxybenzoate dehydrogenase" +BW25113_0596__3prime entA__3prime 0 624754 624951 1 408 0.08585858585858586 198 17 "2 and 3-dihydro-2 and 3-dihydroxybenzoate dehydrogenase" +BW25113_0597 entH 0 624756 625169 1 919 0.0893719806763285 414 37 "enterobactin synthesis proofreading thioesterase" +BW25113_0597__5prime entH__5prime 0 624558 624755 1 595 0.12626262626262627 198 25 "enterobactin synthesis proofreading thioesterase" +BW25113_0597__3prime entH__3prime 0 625170 625367 1 404 0.050505050505050504 198 10 "enterobactin synthesis proofreading thioesterase" +BW25113_0598 cstA 0 625350 627455 1 5856 0.1087369420702754 2106 229 "carbon starvation protein involved in peptide utilization; APC peptide transporter family protein" +BW25113_0598__5prime cstA__5prime 0 625152 625349 1 471 0.05555555555555555 198 11 "carbon starvation protein involved in peptide utilization; APC peptide transporter family protein" +BW25113_0598__3prime cstA__3prime 0 627456 627653 1 870 0.16666666666666666 198 33 "carbon starvation protein involved in peptide utilization; APC peptide transporter family protein" +627570_627604 627570_627604 0 627571 627604 1 5 0.029411764705882353 34 1 "627570_627604" +627570_627604__5prime 627570_627604__5prime 0 627373 627570 1 1010 0.18181818181818182 198 36 "627570_627604" +627570_627604__3prime 627570_627604__3prime 0 627605 627802 1 239 0.09595959595959595 198 19 "627570_627604" +BW25113_4512 ybdD 0 627638 627835 1 366 0.11616161616161616 198 23 "DUF466 family protein" +BW25113_4512__5prime ybdD__5prime 0 627440 627637 1 897 0.18181818181818182 198 36 "DUF466 family protein" +BW25113_4512__3prime ybdD__3prime 0 627836 628033 1 466 0.10606060606060606 198 21 "DUF466 family protein" +BW25113_0599 ybdH 0 627845 628933 -1 2399 0.09641873278236915 1089 105 "putative oxidoreductase" +BW25113_0599__5prime ybdH__5prime 0 628934 629131 -1 185 0.06565656565656566 198 13 "putative oxidoreductase" +BW25113_0599__3prime ybdH__3prime 0 627647 627844 -1 366 0.11616161616161616 198 23 "putative oxidoreductase" +BW25113_0600 ybdL 0 629042 630202 1 2522 0.11283376399655469 1161 131 "methionine aminotransferase and PLP-dependent" +BW25113_0600__5prime ybdL__5prime 0 628844 629041 1 169 0.06060606060606061 198 12 "methionine aminotransferase and PLP-dependent" +BW25113_0600__3prime ybdL__3prime 0 630203 630400 1 882 0.15656565656565657 198 31 "methionine aminotransferase and PLP-dependent" +BW25113_0601 ybdM 0 630203 630832 -1 2213 0.13015873015873017 630 82 "Spo0J family protein and ParB-like nuclease domain" +BW25113_0601__5prime ybdM__5prime 0 630833 631030 -1 736 0.16161616161616163 198 32 "Spo0J family protein and ParB-like nuclease domain" +BW25113_0601__3prime ybdM__3prime 0 630005 630202 -1 385 0.09090909090909091 198 18 "Spo0J family protein and ParB-like nuclease domain" +BW25113_0602 ybdN 0 630805 632025 -1 7135 0.18591318591318592 1221 227 "PAPS reductase-like domain protein" +BW25113_0602__5prime ybdN__5prime 0 632026 632223 -1 1010 0.18686868686868688 198 37 "PAPS reductase-like domain protein" +BW25113_0602__3prime ybdN__3prime 0 630607 630804 -1 653 0.12121212121212122 198 24 "PAPS reductase-like domain protein" +BW25113_0603 ybdO 0 632172 633074 -1 6156 0.21816168327796234 903 197 "putative DNA-binding transcriptional regulator" +BW25113_0603__5prime ybdO__5prime 0 633075 633272 -1 968 0.1414141414141414 198 28 "putative DNA-binding transcriptional regulator" +BW25113_0603__3prime ybdO__3prime 0 631974 632171 -1 1406 0.24242424242424243 198 48 "putative DNA-binding transcriptional regulator" +BW25113_0604 dsbG 0 633283 634029 -1 4400 0.1646586345381526 747 123 "thiol:disulfide interchange protein and periplasmic" +BW25113_0604__5prime dsbG__5prime 0 634030 634227 -1 221 0.06060606060606061 198 12 "thiol:disulfide interchange protein and periplasmic" +BW25113_0604__3prime dsbG__3prime 0 633085 633282 -1 611 0.12626262626262627 198 25 "thiol:disulfide interchange protein and periplasmic" +BW25113_0605 ahpC 0 634401 634964 1 1213 0.11170212765957446 564 63 "alkyl hydroperoxide reductase and C22 subunit" +BW25113_0605__5prime ahpC__5prime 0 634203 634400 1 334 0.06565656565656566 198 13 "alkyl hydroperoxide reductase and C22 subunit" +BW25113_0605__3prime ahpC__3prime 0 634965 635162 1 84 0.04040404040404041 198 8 "alkyl hydroperoxide reductase and C22 subunit" +BW25113_0606 ahpF 0 635209 636774 1 4128 0.1251596424010217 1566 196 "alkyl hydroperoxide reductase and F52a subunit and FAD/NAD(P)-binding" +BW25113_0606__5prime ahpF__5prime 0 635011 635208 1 171 0.06565656565656566 198 13 "alkyl hydroperoxide reductase and F52a subunit and FAD/NAD(P)-binding" +BW25113_0606__3prime ahpF__3prime 0 636775 636972 1 141 0.045454545454545456 198 9 "alkyl hydroperoxide reductase and F52a subunit and FAD/NAD(P)-binding" +BW25113_0607 uspG 0 636895 637323 -1 1906 0.12121212121212122 429 52 "universal stress protein UP12" +BW25113_0607__5prime uspG__5prime 0 637324 637521 -1 1140 0.20202020202020202 198 40 "universal stress protein UP12" +BW25113_0607__3prime uspG__3prime 0 636697 636894 -1 196 0.06060606060606061 198 12 "universal stress protein UP12" +BW25113_0608 ybdR 0 637544 638782 1 4357 0.13236481033091202 1239 164 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_0608__5prime ybdR__5prime 0 637346 637543 1 937 0.18686868686868688 198 37 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_0608__3prime ybdR__3prime 0 638783 638980 1 150 0.06060606060606061 198 12 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_0610 rnk 0 639013 639423 -1 858 0.12165450121654502 411 50 "regulator of nucleoside diphosphate kinase" +BW25113_0610__5prime rnk__5prime 0 639424 639621 -1 399 0.1111111111111111 198 22 "regulator of nucleoside diphosphate kinase" +BW25113_0610__3prime rnk__3prime 0 638815 639012 -1 185 0.0707070707070707 198 14 "regulator of nucleoside diphosphate kinase" +BW25113_0611 rna 0 639653 640459 -1 1352 0.05947955390334572 807 48 "ribonuclease I" +BW25113_0611__5prime rna__5prime 0 640460 640657 -1 100 0.030303030303030304 198 6 "ribonuclease I" +BW25113_0611__3prime rna__3prime 0 639455 639652 -1 397 0.1111111111111111 198 22 "ribonuclease I" +BW25113_0612 citT 0 640573 642036 -1 4502 0.11270491803278689 1464 165 "citrate:succinate antiporter" +BW25113_0612__5prime citT__5prime 0 642037 642234 -1 262 0.08080808080808081 198 16 "citrate:succinate antiporter" +BW25113_0612__3prime citT__3prime 0 640375 640572 -1 136 0.04040404040404041 198 8 "citrate:succinate antiporter" +BW25113_0613 citG 0 642087 642965 -1 2068 0.13310580204778158 879 117 '"2-(5''''-triphosphoribosyl)-3''-dephosphocoenzyme-A synthase"' +BW25113_0613__5prime citG__5prime 0 642966 643163 -1 474 0.09090909090909091 198 18 '"2-(5''''-triphosphoribosyl)-3''-dephosphocoenzyme-A synthase"' +BW25113_0613__3prime citG__3prime 0 641889 642086 -1 273 0.0707070707070707 198 14 '"2-(5''''-triphosphoribosyl)-3''-dephosphocoenzyme-A synthase"' +BW25113_0614 citX 0 642940 643491 -1 1408 0.10326086956521739 552 57 "apo-citrate lyase phosphoribosyl-dephospho-CoA transferase" +BW25113_0614__5prime citX__5prime 0 643492 643689 -1 570 0.13636363636363635 198 27 "apo-citrate lyase phosphoribosyl-dephospho-CoA transferase" +BW25113_0614__3prime citX__3prime 0 642742 642939 -1 491 0.11616161616161616 198 23 "apo-citrate lyase phosphoribosyl-dephospho-CoA transferase" +BW25113_0615 citF 0 643495 645027 -1 2899 0.09067188519243313 1533 139 "citrate lyase and citrate-ACP transferase (alpha) subunit" +BW25113_0615__5prime citF__5prime 0 645028 645225 -1 294 0.09090909090909091 198 18 "citrate lyase and citrate-ACP transferase (alpha) subunit" +BW25113_0615__3prime citF__3prime 0 643297 643494 -1 747 0.13636363636363635 198 27 "citrate lyase and citrate-ACP transferase (alpha) subunit" +643634_643839 643634_643839 0 643635 643839 1 638 0.11707317073170732 205 24 "643634_643839" +643634_643839__5prime 643634_643839__5prime 0 643437 643634 1 496 0.15151515151515152 198 30 "643634_643839" +643634_643839__3prime 643634_643839__3prime 0 643840 644037 1 405 0.1111111111111111 198 22 "643634_643839" +BW25113_0616 citE 0 645038 645946 -1 1263 0.06930693069306931 909 63 "citrate lyase and citryl-ACP lyase (beta) subunit" +BW25113_0616__5prime citE__5prime 0 645947 646144 -1 392 0.10101010101010101 198 20 "citrate lyase and citryl-ACP lyase (beta) subunit" +BW25113_0616__3prime citE__3prime 0 644840 645037 -1 304 0.08585858585858586 198 17 "citrate lyase and citryl-ACP lyase (beta) subunit" +BW25113_0617 citD 0 645943 646239 -1 467 0.08080808080808081 297 24 "citrate lyase and acyl carrier (gamma) subunit" +BW25113_0617__5prime citD__5prime 0 646240 646437 -1 232 0.07575757575757576 198 15 "citrate lyase and acyl carrier (gamma) subunit" +BW25113_0617__3prime citD__3prime 0 645745 645942 -1 394 0.06565656565656566 198 13 "citrate lyase and acyl carrier (gamma) subunit" +BW25113_0618 citC 0 646254 647312 -1 5606 0.20113314447592068 1059 213 "[citrate [pro-3S]-lyase] ligase" +BW25113_0618__5prime citC__5prime 0 647313 647510 -1 399 0.1717171717171717 198 34 "[citrate [pro-3S]-lyase] ligase" +BW25113_0618__3prime citC__3prime 0 646056 646253 -1 199 0.045454545454545456 198 9 "[citrate [pro-3S]-lyase] ligase" +BW25113_0619 citA 0 647691 649349 1 8723 0.17058468957203135 1659 283 "sensory histidine kinase in two-component regulatory system with CitB" +BW25113_0619__5prime citA__5prime 0 647493 647690 1 186 0.06565656565656566 198 13 "sensory histidine kinase in two-component regulatory system with CitB" +BW25113_0619__3prime citA__3prime 0 649350 649547 1 649 0.16666666666666666 198 33 "sensory histidine kinase in two-component regulatory system with CitB" +BW25113_0620 citB 0 649318 649998 1 3395 0.1894273127753304 681 129 "response regulator in two-component regulatory system with CitA" +BW25113_0620__5prime citB__5prime 0 649120 649317 1 1447 0.2828282828282828 198 56 "response regulator in two-component regulatory system with CitA" +BW25113_0620__3prime citB__3prime 0 649999 650196 1 624 0.10606060606060606 198 21 "response regulator in two-component regulatory system with CitA" +650007_650030 650007_650030 0 650008 650030 1 0 0.0 23 0 "650007_650030" +650007_650030__5prime 650007_650030__5prime 0 649810 650007 1 964 0.16666666666666666 198 33 "650007_650030" +650007_650030__3prime 650007_650030__3prime 0 650031 650228 1 643 0.11616161616161616 198 23 "650007_650030" +BW25113_0621 dcuC 0 650039 651424 -1 6121 0.1782106782106782 1386 247 "anaerobic C4-dicarboxylate transport" +BW25113_0621__5prime dcuC__5prime 0 651425 651622 -1 303 0.12626262626262627 198 25 "anaerobic C4-dicarboxylate transport" +BW25113_0621__3prime dcuC__3prime 0 649841 650038 -1 940 0.15656565656565657 198 31 "anaerobic C4-dicarboxylate transport" +BW25113_0622 pagP 0 652013 652573 1 3610 0.2014260249554367 561 113 "phospholipid:lipid A palmitoyltransferase" +BW25113_0622__5prime pagP__5prime 0 651815 652012 1 620 0.1111111111111111 198 22 "phospholipid:lipid A palmitoyltransferase" +BW25113_0622__3prime pagP__3prime 0 652574 652771 1 48 0.010101010101010102 198 2 "phospholipid:lipid A palmitoyltransferase" +BW25113_0623 cspE 0 652748 652957 1 264 0.09523809523809523 210 20 "constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein" +BW25113_0623__5prime cspE__5prime 0 652550 652747 1 41 0.005050505050505051 198 1 "constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein" +BW25113_0623__3prime cspE__3prime 0 652958 653155 1 224 0.05555555555555555 198 11 "constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein" +BW25113_0624 flc 0 653011 653394 -1 738 0.078125 384 30 "fluoride efflux channel and dual topology membrane protein" +BW25113_0624__5prime flc__5prime 0 653395 653592 -1 182 0.06565656565656566 198 13 "fluoride efflux channel and dual topology membrane protein" +BW25113_0624__3prime flc__3prime 0 652813 653010 -1 195 0.07575757575757576 198 15 "fluoride efflux channel and dual topology membrane protein" +BW25113_4581 ybeM 0 653487 654274 1 1812 0.0901015228426396 788 71 "653486_654274" +BW25113_4581__5prime ybeM__5prime 0 653289 653486 1 168 0.0707070707070707 198 14 "653486_654274" +BW25113_4581__3prime ybeM__3prime 0 654275 654472 1 188 0.050505050505050504 198 10 "653486_654274" +BW25113_0627 tatE 0 654403 654606 1 249 0.0784313725490196 204 16 "TatABCE protein translocation system subunit" +BW25113_0627__5prime tatE__5prime 0 654205 654402 1 155 0.05555555555555555 198 11 "TatABCE protein translocation system subunit" +BW25113_0627__3prime tatE__3prime 0 654607 654804 1 49 0.020202020202020204 198 4 "TatABCE protein translocation system subunit" +BW25113_0628 lipA 0 654707 655672 -1 110 0.012422360248447204 966 12 "lipoate synthase" +BW25113_0628__5prime lipA__5prime 0 655673 655870 -1 271 0.050505050505050504 198 10 "lipoate synthase" +BW25113_0628__3prime lipA__3prime 0 654509 654706 -1 112 0.04040404040404041 198 8 "lipoate synthase" +BW25113_0629 ybeF 0 655881 656834 -1 7239 0.24423480083857443 954 233 "LysR family putative transcriptional regulator" +BW25113_0629__5prime ybeF__5prime 0 656835 657032 -1 757 0.15151515151515152 198 30 "LysR family putative transcriptional regulator" +BW25113_0629__3prime ybeF__3prime 0 655683 655880 -1 164 0.050505050505050504 198 10 "LysR family putative transcriptional regulator" +BW25113_0630 lipB 0 657093 657734 -1 524 0.0529595015576324 642 34 "octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase" +BW25113_0630__5prime lipB__5prime 0 657735 657932 -1 264 0.08080808080808081 198 16 "octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase" +BW25113_0630__3prime lipB__3prime 0 656895 657092 -1 1108 0.2222222222222222 198 44 "octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase" +BW25113_0631 ybeD 0 657835 658098 -1 82 0.030303030303030304 264 8 "UPF0250 family protein" +BW25113_0631__5prime ybeD__5prime 0 658099 658296 -1 0 0.0 198 0 "UPF0250 family protein" +BW25113_0631__3prime ybeD__3prime 0 657637 657834 -1 188 0.045454545454545456 198 9 "UPF0250 family protein" +BW25113_0632 dacA 0 658208 659419 -1 2400 0.07590759075907591 1212 92 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)" +BW25113_0632__5prime dacA__5prime 0 659420 659617 -1 221 0.08080808080808081 198 16 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)" +BW25113_0632__3prime dacA__3prime 0 658010 658207 -1 0 0.0 198 0 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)" +BW25113_0633 rlpA 0 659558 660646 -1 1694 0.07988980716253444 1089 87 "septal ring protein and suppressor of prc and minor lipoprotein" +BW25113_0633__5prime rlpA__5prime 0 660647 660844 -1 0 0.0 198 0 "septal ring protein and suppressor of prc and minor lipoprotein" +BW25113_0633__3prime rlpA__3prime 0 659360 659557 -1 211 0.09090909090909091 198 18 "septal ring protein and suppressor of prc and minor lipoprotein" +BW25113_0634 mrdB 0 660657 661769 -1 7 0.0008984725965858042 1113 1 "cell wall shape-determining protein" +BW25113_0634__5prime mrdB__5prime 0 661770 661967 -1 78 0.020202020202020204 198 4 "cell wall shape-determining protein" +BW25113_0634__3prime mrdB__3prime 0 660459 660656 -1 374 0.12626262626262627 198 25 "cell wall shape-determining protein" +BW25113_0635 mrdA 0 661772 663673 -1 78 0.002103049421661409 1902 4 "transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)" +BW25113_0635__5prime mrdA__5prime 0 663674 663871 -1 248 0.05555555555555555 198 11 "transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)" +BW25113_0635__3prime mrdA__3prime 0 661574 661771 -1 0 0.0 198 0 "transpeptidase involved in peptidoglycan synthesis (penicillin-binding protein 2)" +BW25113_0636 rlmH 0 663704 664171 -1 470 0.03632478632478633 468 17 "23S rRNA m(3)Psi1915 pseudouridine methyltransferase and SAM-dependent" +BW25113_0636__5prime rlmH__5prime 0 664172 664369 -1 508 0.08080808080808081 198 16 "23S rRNA m(3)Psi1915 pseudouridine methyltransferase and SAM-dependent" +BW25113_0636__3prime rlmH__3prime 0 663506 663703 -1 0 0.0 198 0 "23S rRNA m(3)Psi1915 pseudouridine methyltransferase and SAM-dependent" +BW25113_0637 rsfS 0 664175 664492 -1 870 0.06918238993710692 318 22 "ribosomal silencing factor" +BW25113_0637__5prime rsfS__5prime 0 664493 664690 -1 128 0.020202020202020204 198 4 "ribosomal silencing factor" +BW25113_0637__3prime rsfS__3prime 0 663977 664174 -1 45 0.005050505050505051 198 1 "ribosomal silencing factor" +BW25113_0638 cobC 0 664752 665363 -1 1612 0.10294117647058823 612 63 '"putative alpha-ribazole-5''-P phosphatase"' +BW25113_0638__5prime cobC__5prime 0 665364 665561 -1 151 0.05555555555555555 198 11 '"putative alpha-ribazole-5''-P phosphatase"' +BW25113_0638__3prime cobC__3prime 0 664554 664751 -1 122 0.030303030303030304 198 6 '"putative alpha-ribazole-5''-P phosphatase"' +BW25113_0639 nadD 0 665387 666028 -1 116 0.010903426791277258 642 7 "nicotinic acid mononucleotide adenylyltransferase and NAD(P)-dependent" +BW25113_0639__5prime nadD__5prime 0 666029 666226 -1 124 0.03535353535353535 198 7 "nicotinic acid mononucleotide adenylyltransferase and NAD(P)-dependent" +BW25113_0639__3prime nadD__3prime 0 665189 665386 -1 654 0.15151515151515152 198 30 "nicotinic acid mononucleotide adenylyltransferase and NAD(P)-dependent" +BW25113_0640 holA 0 666030 667061 -1 124 0.006782945736434108 1032 7 "DNA polymerase III and delta subunit" +BW25113_0640__5prime holA__5prime 0 667062 667259 -1 0 0.0 198 0 "DNA polymerase III and delta subunit" +BW25113_0640__3prime holA__3prime 0 665832 666029 -1 0 0.0 198 0 "DNA polymerase III and delta subunit" +BW25113_0641 lptE 0 667061 667642 -1 0 0.0 582 0 "LPS assembly OM complex LptDE and lipoprotein component" +BW25113_0641__5prime lptE__5prime 0 667643 667840 -1 0 0.0 198 0 "LPS assembly OM complex LptDE and lipoprotein component" +BW25113_0641__3prime lptE__3prime 0 666863 667060 -1 0 0.0 198 0 "LPS assembly OM complex LptDE and lipoprotein component" +BW25113_0642 leuS 0 667657 670239 -1 0 0.0 2583 0 "leucyl-tRNA synthetase" +BW25113_0642__5prime leuS__5prime 0 670240 670437 -1 103 0.030303030303030304 198 6 "leucyl-tRNA synthetase" +BW25113_0642__3prime leuS__3prime 0 667459 667656 -1 0 0.0 198 0 "leucyl-tRNA synthetase" +BW25113_0643 ybeL 0 670474 670956 1 890 0.11801242236024845 483 57 "DUF1451 family protein" +BW25113_0643__5prime ybeL__5prime 0 670276 670473 1 117 0.04040404040404041 198 8 "DUF1451 family protein" +BW25113_0643__3prime ybeL__3prime 0 670957 671154 1 581 0.13131313131313133 198 26 "DUF1451 family protein" +BW25113_0644 ybeQ 0 671026 672003 -1 7261 0.2474437627811861 978 242 "Sel1 family TPR-like repeat protein" +BW25113_0644__5prime ybeQ__5prime 0 672004 672201 -1 158 0.04040404040404041 198 8 "Sel1 family TPR-like repeat protein" +BW25113_0644__3prime ybeQ__3prime 0 670828 671025 -1 255 0.08585858585858586 198 17 "Sel1 family TPR-like repeat protein" +BW25113_0645 ybeR 0 672167 672874 1 10089 0.3403954802259887 708 241 "uncharacterized protein" +BW25113_0645__5prime ybeR__5prime 0 671969 672166 1 139 0.025252525252525252 198 5 "uncharacterized protein" +BW25113_0645__3prime ybeR__3prime 0 672875 673072 1 3082 0.3787878787878788 198 75 "uncharacterized protein" +BW25113_0646 djlB 0 672871 674298 1 13314 0.3018207282913165 1428 431 "putative HscC co-chaperone and uncharacterized J domain-containing protein" +BW25113_0646__5prime djlB__5prime 0 672673 672870 1 3816 0.2727272727272727 198 54 "putative HscC co-chaperone and uncharacterized J domain-containing protein" +BW25113_0646__3prime djlB__3prime 0 674299 674496 1 2818 0.3888888888888889 198 77 "putative HscC co-chaperone and uncharacterized J domain-containing protein" +BW25113_0647 ybeT 0 674308 674862 -1 8597 0.38738738738738737 555 215 "Sel1 family TPR-like repeat protein" +BW25113_0647__5prime ybeT__5prime 0 674863 675060 -1 417 0.12626262626262627 198 25 "Sel1 family TPR-like repeat protein" +BW25113_0647__3prime ybeT__3prime 0 674110 674307 -1 2192 0.29797979797979796 198 59 "Sel1 family TPR-like repeat protein" +BW25113_0648 ybeU 0 674964 675671 1 5580 0.2542372881355932 708 180 "DUF1266 family protein" +BW25113_0648__5prime ybeU__5prime 0 674766 674963 1 674 0.12121212121212122 198 24 "DUF1266 family protein" +BW25113_0648__3prime ybeU__3prime 0 675672 675869 1 1011 0.16161616161616163 198 32 "DUF1266 family protein" +BW25113_0649 djlC 0 675668 677119 1 4720 0.1446280991735537 1452 210 "J domain-containing HscC co-chaperone; Hsc56" +BW25113_0649__5prime djlC__5prime 0 675470 675667 1 676 0.1919191919191919 198 38 "J domain-containing HscC co-chaperone; Hsc56" +BW25113_0649__3prime djlC__3prime 0 677120 677317 1 112 0.045454545454545456 198 9 "J domain-containing HscC co-chaperone; Hsc56" +677140_677170 677140_677170 0 677141 677170 1 48 0.06666666666666667 30 2 "677140_677170" +677140_677170__5prime 677140_677170__5prime 0 676943 677140 1 292 0.09090909090909091 198 18 "677140_677170" +677140_677170__3prime 677140_677170__3prime 0 677171 677368 1 97 0.05555555555555555 198 11 "677140_677170" +BW25113_0650 hscC 0 677179 678849 -1 7937 0.1549970077797726 1671 259 "Hsp70 family chaperone Hsc62 and binds to RpoD and inhibits transcription" +BW25113_0650__5prime hscC__5prime 0 678850 679047 -1 1508 0.2828282828282828 198 56 "Hsp70 family chaperone Hsc62 and binds to RpoD and inhibits transcription" +BW25113_0650__3prime hscC__3prime 0 676981 677178 -1 311 0.10101010101010101 198 20 "Hsp70 family chaperone Hsc62 and binds to RpoD and inhibits transcription" +BW25113_0651 rihA 0 678933 679868 -1 6554 0.1517094017094017 936 142 "ribonucleoside hydrolase 1" +BW25113_0651__5prime rihA__5prime 0 679869 680066 -1 509 0.07575757575757576 198 15 "ribonucleoside hydrolase 1" +BW25113_0651__3prime rihA__3prime 0 678735 678932 -1 1633 0.29797979797979796 198 59 "ribonucleoside hydrolase 1" +BW25113_0652 gltL 0 679986 680711 -1 1946 0.08402203856749312 726 61 "glutamate and aspartate ABC transporter ATP-binding subunit" +BW25113_0652__5prime gltL__5prime 0 680712 680909 -1 664 0.13131313131313133 198 26 "glutamate and aspartate ABC transporter ATP-binding subunit" +BW25113_0652__3prime gltL__3prime 0 679788 679985 -1 513 0.1111111111111111 198 22 "glutamate and aspartate ABC transporter ATP-binding subunit" +BW25113_0653 gltK 0 680711 681385 -1 1825 0.10518518518518519 675 71 "glutamate and aspartate ABC transporter permease subunit" +BW25113_0653__5prime gltK__5prime 0 681386 681583 -1 451 0.12121212121212122 198 24 "glutamate and aspartate ABC transporter permease subunit" +BW25113_0653__3prime gltK__3prime 0 680513 680710 -1 283 0.050505050505050504 198 10 "glutamate and aspartate ABC transporter permease subunit" +BW25113_0654 gltJ 0 681385 682125 -1 1368 0.08636977058029689 741 64 "glutamate and aspartate ABC transporter permease subunit" +BW25113_0654__5prime gltJ__5prime 0 682126 682323 -1 667 0.1111111111111111 198 22 "glutamate and aspartate ABC transporter permease subunit" +BW25113_0654__3prime gltJ__3prime 0 681187 681384 -1 306 0.10606060606060606 198 21 "glutamate and aspartate ABC transporter permease subunit" +682205_682230 682205_682230 0 682206 682230 1 20 0.12 25 3 "682205_682230" +682205_682230__5prime 682205_682230__5prime 0 682008 682205 1 233 0.09595959595959595 198 19 "682205_682230" +682205_682230__3prime 682205_682230__3prime 0 682231 682428 1 592 0.09090909090909091 198 18 "682205_682230" +BW25113_0655 gltI 0 682295 683203 -1 1501 0.06490649064906491 909 59 "glutamate and aspartate binding protein and periplasmic; part of GltJKLI ABC transporter" +BW25113_0655__5prime gltI__5prime 0 683204 683401 -1 142 0.05555555555555555 198 11 "glutamate and aspartate binding protein and periplasmic; part of GltJKLI ABC transporter" +BW25113_0655__3prime gltI__3prime 0 682097 682294 -1 538 0.09090909090909091 198 18 "glutamate and aspartate binding protein and periplasmic; part of GltJKLI ABC transporter" +683306_684501 683306_684501 0 683307 684501 -1 2544 0.18242677824267783 1195 218 "683306_684501" +683306_684501__5prime 683306_684501__5prime 0 684502 684699 -1 594 0.10606060606060606 198 21 "683306_684501" +683306_684501__3prime 683306_684501__3prime 0 683109 683306 -1 454 0.10606060606060606 198 21 "683306_684501" +BW25113_0656 insH1 0 683453 684469 -1 2262 0.19075712881022616 1017 194 "IS5 transposase and trans-activator" +BW25113_0656__5prime insH1__5prime 0 684470 684667 -1 713 0.16666666666666666 198 33 "IS5 transposase and trans-activator" +BW25113_0656__3prime insH1__3prime 0 683255 683452 -1 139 0.06565656565656566 198 13 "IS5 transposase and trans-activator" +684719_684753 684719_684753 0 684720 684753 1 76 0.14705882352941177 34 5 "684719_684753" +684719_684753__5prime 684719_684753__5prime 0 684522 684719 1 517 0.09595959595959595 198 19 "684719_684753" +684719_684753__3prime 684719_684753__3prime 0 684754 684951 1 209 0.04040404040404041 198 8 "684719_684753" +BW25113_0657 lnt 0 684799 686337 -1 222 0.00649772579597141 1539 10 "apolipoprotein N-acyltransferase" +BW25113_0657__5prime lnt__5prime 0 686338 686535 -1 450 0.045454545454545456 198 9 "apolipoprotein N-acyltransferase" +BW25113_0657__3prime lnt__3prime 0 684601 684798 -1 307 0.09595959595959595 198 19 "apolipoprotein N-acyltransferase" +BW25113_0658 ybeX 0 686362 687240 -1 1997 0.08873720136518772 879 78 "putative ion transport" +BW25113_0658__5prime ybeX__5prime 0 687241 687438 -1 198 0.08080808080808081 198 16 "putative ion transport" +BW25113_0658__3prime ybeX__3prime 0 686164 686361 -1 85 0.025252525252525252 198 5 "putative ion transport" +BW25113_0659 ybeY 0 687330 687797 -1 188 0.029914529914529916 468 14 '"ssRNA-specific endoribonuclease; co-endoribonuclease working with RNase R in 16S rRNA 3'' end maturation and quality control; rRNA transcription antitermination factor"' +BW25113_0659__5prime ybeY__5prime 0 687798 687995 -1 679 0.12626262626262627 198 25 '"ssRNA-specific endoribonuclease; co-endoribonuclease working with RNase R in 16S rRNA 3'' end maturation and quality control; rRNA transcription antitermination factor"' +BW25113_0659__3prime ybeY__3prime 0 687132 687329 -1 200 0.07575757575757576 198 15 '"ssRNA-specific endoribonuclease; co-endoribonuclease working with RNase R in 16S rRNA 3'' end maturation and quality control; rRNA transcription antitermination factor"' +BW25113_0660 ybeZ 0 687794 688834 -1 2463 0.07204610951008646 1041 75 "PhoH-like heat shock protein" +BW25113_0660__5prime ybeZ__5prime 0 688835 689032 -1 622 0.11616161616161616 198 23 "PhoH-like heat shock protein" +BW25113_0660__3prime ybeZ__3prime 0 687596 687793 -1 25 0.015151515151515152 198 3 "PhoH-like heat shock protein" +BW25113_0661 miaB 0 688987 690411 -1 2626 0.09824561403508772 1425 140 "tRNA-i(6)A37 methylthiotransferase" +BW25113_0661__5prime miaB__5prime 0 690412 690609 -1 207 0.07575757575757576 198 15 "tRNA-i(6)A37 methylthiotransferase" +BW25113_0661__3prime miaB__3prime 0 688789 688986 -1 568 0.09090909090909091 198 18 "tRNA-i(6)A37 methylthiotransferase" +BW25113_0662 ubiF 0 690557 691732 1 250 0.015306122448979591 1176 18 "2-octaprenyl-3-methyl-6-methoxy-1 and 4-benzoquinol oxygenase" +BW25113_0662__5prime ubiF__5prime 0 690359 690556 1 234 0.09090909090909091 198 18 "2-octaprenyl-3-methyl-6-methoxy-1 and 4-benzoquinol oxygenase" +BW25113_0662__3prime ubiF__3prime 0 691733 691930 1 326 0.06060606060606061 198 12 "2-octaprenyl-3-methyl-6-methoxy-1 and 4-benzoquinol oxygenase" +691762_691833 691762_691833 0 691763 691833 1 84 0.08450704225352113 71 6 "691762_691833" +691762_691833__5prime 691762_691833__5prime 0 691565 691762 1 297 0.06565656565656566 198 13 "691762_691833" +691762_691833__3prime 691762_691833__3prime 0 691834 692031 1 251 0.0707070707070707 198 14 "691762_691833" +BW25113_0664 glnX 0 691886 691960 -1 90 0.06666666666666667 75 5 "tRNA-Gln" +BW25113_0664__5prime glnX__5prime 0 691961 692158 -1 340 0.11616161616161616 198 23 "tRNA-Gln" +BW25113_0664__3prime glnX__3prime 0 691688 691885 -1 355 0.07575757575757576 198 15 "tRNA-Gln" +BW25113_0665 glnV 0 691998 692072 -1 183 0.13333333333333333 75 10 "tRNA-Gln" +BW25113_0665__5prime glnV__5prime 0 692073 692270 -1 99 0.050505050505050504 198 10 "tRNA-Gln" +BW25113_0665__3prime glnV__3prime 0 691800 691997 -1 226 0.07575757575757576 198 15 "tRNA-Gln" +BW25113_0666 metU 0 692120 692196 -1 47 0.06493506493506493 77 5 "tRNA-Met" +BW25113_0666__5prime metU__5prime 0 692197 692394 -1 39 0.020202020202020204 198 4 "tRNA-Met" +BW25113_0666__3prime metU__3prime 0 691922 692119 -1 394 0.12626262626262627 198 25 "tRNA-Met" +BW25113_0668 glnW 0 692212 692286 -1 18 0.013333333333333334 75 1 "tRNA-Gln" +BW25113_0668__5prime glnW__5prime 0 692287 692484 -1 21 0.015151515151515152 198 3 "tRNA-Gln" +BW25113_0668__3prime glnW__3prime 0 692014 692211 -1 264 0.09595959595959595 198 19 "tRNA-Gln" +BW25113_0670 glnU 0 692321 692395 -1 0 0.0 75 0 "tRNA-Gln" +BW25113_0670__5prime glnU__5prime 0 692396 692593 -1 26 0.015151515151515152 198 3 "tRNA-Gln" +BW25113_0670__3prime glnU__3prime 0 692123 692320 -1 86 0.045454545454545456 198 9 "tRNA-Gln" +BW25113_0672 leuW 0 692419 692503 -1 0 0.0 85 0 "tRNA-Leu" +BW25113_0672__5prime leuW__5prime 0 692504 692701 -1 26 0.015151515151515152 198 3 "tRNA-Leu" +BW25113_0672__3prime leuW__3prime 0 692221 692418 -1 39 0.020202020202020204 198 4 "tRNA-Leu" +BW25113_0673 metT 0 692513 692589 -1 26 0.03896103896103896 77 3 "tRNA-Met" +BW25113_0673__5prime metT__5prime 0 692590 692787 -1 157 0.04040404040404041 198 8 "tRNA-Met" +BW25113_0673__3prime metT__3prime 0 692315 692512 -1 0 0.0 198 0 "tRNA-Met" +BW25113_0674 asnB 0 692969 694633 -1 5113 0.12552552552552554 1665 209 "asparagine synthetase B" +BW25113_0674__5prime asnB__5prime 0 694634 694831 -1 210 0.015151515151515152 198 3 "asparagine synthetase B" +BW25113_0674__3prime asnB__3prime 0 692771 692968 -1 253 0.13131313131313133 198 26 "asparagine synthetase B" +694880_694978 694880_694978 0 694881 694978 1 71 0.07142857142857142 98 7 "694880_694978" +694880_694978__5prime 694880_694978__5prime 0 694683 694880 1 210 0.015151515151515152 198 3 "694880_694978" +694880_694978__3prime 694880_694978__3prime 0 694979 695176 1 659 0.13636363636363635 198 27 "694880_694978" +BW25113_0675 umpH 0 695030 695782 -1 1975 0.10624169986719788 753 80 "UMP phosphatase" +BW25113_0675__5prime umpH__5prime 0 695783 695980 -1 519 0.12121212121212122 198 24 "UMP phosphatase" +BW25113_0675__3prime umpH__3prime 0 694832 695029 -1 166 0.08080808080808081 198 16 "UMP phosphatase" +BW25113_0676 nagC 0 695830 697050 -1 2731 0.09582309582309582 1221 117 "N-acetylglucosamine-inducible nag divergent operon transcriptional repressor" +BW25113_0676__5prime nagC__5prime 0 697051 697248 -1 494 0.10101010101010101 198 20 "N-acetylglucosamine-inducible nag divergent operon transcriptional repressor" +BW25113_0676__3prime nagC__3prime 0 695632 695829 -1 472 0.1414141414141414 198 28 "N-acetylglucosamine-inducible nag divergent operon transcriptional repressor" +BW25113_0677 nagA 0 697059 698207 -1 2773 0.12358572671888599 1149 142 "N-acetylglucosamine-6-phosphate deacetylase" +BW25113_0677__5prime nagA__5prime 0 698208 698405 -1 656 0.12121212121212122 198 24 "N-acetylglucosamine-6-phosphate deacetylase" +BW25113_0677__3prime nagA__3prime 0 696861 697058 -1 534 0.07575757575757576 198 15 "N-acetylglucosamine-6-phosphate deacetylase" +BW25113_0678 nagB 0 698267 699067 -1 1586 0.08239700374531835 801 66 "glucosamine-6-phosphate deaminase" +BW25113_0678__5prime nagB__5prime 0 699068 699265 -1 102 0.010101010101010102 198 2 "glucosamine-6-phosphate deaminase" +BW25113_0678__3prime nagB__3prime 0 698069 698266 -1 609 0.15151515151515152 198 30 "glucosamine-6-phosphate deaminase" +BW25113_0679 nagE 0 699400 701346 1 4625 0.10888546481766821 1947 212 "fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB and and IIA components" +BW25113_0679__5prime nagE__5prime 0 699202 699399 1 151 0.04040404040404041 198 8 "fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB and and IIA components" +BW25113_0679__3prime nagE__3prime 0 701347 701544 1 274 0.08080808080808081 198 16 "fused N-acetyl glucosamine specific PTS enzyme: IIC and IIB and and IIA components" +BW25113_0679 nagE 0 700469 700469 1 0 0.0 1 0 "700468_700469" +BW25113_0679__5prime nagE__5prime 0 700271 700468 1 813 0.1717171717171717 198 34 "700468_700469" +BW25113_0679__3prime nagE__3prime 0 700470 700667 1 593 0.10606060606060606 198 21 "700468_700469" +701352_701388 701352_701388 0 701353 701388 1 10 0.027777777777777776 36 1 "701352_701388" +701352_701388__5prime 701352_701388__5prime 0 701155 701352 1 447 0.05555555555555555 198 11 "701352_701388" +701352_701388__3prime 701352_701388__3prime 0 701389 701586 1 264 0.07575757575757576 198 15 "701352_701388" +BW25113_0680 glnS 0 701549 703213 1 344 0.006006006006006006 1665 10 "glutamyl-tRNA synthetase" +BW25113_0680__5prime glnS__5prime 0 701351 701548 1 274 0.08080808080808081 198 16 "glutamyl-tRNA synthetase" +BW25113_0680__3prime glnS__3prime 0 703214 703411 1 650 0.10606060606060606 198 21 "glutamyl-tRNA synthetase" +703225_703390 703225_703390 0 703226 703390 1 650 0.12727272727272726 165 21 "703225_703390" +703225_703390__5prime 703225_703390__5prime 0 703028 703225 1 305 0.030303030303030304 198 6 "703225_703390" +703225_703390__3prime 703225_703390__3prime 0 703391 703588 1 112 0.030303030303030304 198 6 "703225_703390" +BW25113_0681 chiP 0 703790 705196 1 3801 0.11940298507462686 1407 168 "chitoporin and uptake of chitosugars" +BW25113_0681__5prime chiP__5prime 0 703592 703789 1 53 0.025252525252525252 198 5 "chitoporin and uptake of chitosugars" +BW25113_0681__3prime chiP__3prime 0 705197 705394 1 370 0.07575757575757576 198 15 "chitoporin and uptake of chitosugars" +BW25113_0682 chiQ 0 705246 705572 1 774 0.09785932721712538 327 32 "chitosugar-induced verified lipoprotein" +BW25113_0682__5prime chiQ__5prime 0 705048 705245 1 87 0.04040404040404041 198 8 "chitosugar-induced verified lipoprotein" +BW25113_0682__3prime chiQ__3prime 0 705573 705770 1 211 0.06060606060606061 198 12 "chitosugar-induced verified lipoprotein" +BW25113_0683 fur 0 705656 706102 -1 478 0.053691275167785234 447 24 "ferric iron uptake regulon transcriptional repressor; autorepressor" +BW25113_0683__5prime fur__5prime 0 706103 706300 -1 90 0.05555555555555555 198 11 "ferric iron uptake regulon transcriptional repressor; autorepressor" +BW25113_0683__3prime fur__3prime 0 705458 705655 -1 313 0.0707070707070707 198 14 "ferric iron uptake regulon transcriptional repressor; autorepressor" +BW25113_4637 uof 0 706095 706181 -1 169 0.08045977011494253 87 7 "ryhB-regulated fur leader peptide" +BW25113_4637__5prime uof__5prime 0 706182 706379 -1 123 0.06060606060606061 198 12 "ryhB-regulated fur leader peptide" +BW25113_4637__3prime uof__3prime 0 705897 706094 -1 86 0.025252525252525252 198 5 "ryhB-regulated fur leader peptide" +706363_706396 706363_706396 0 706364 706396 1 33 0.06060606060606061 33 2 "706363_706396" +706363_706396__5prime 706363_706396__5prime 0 706166 706363 1 100 0.05555555555555555 198 11 "706363_706396" +706363_706396__3prime 706363_706396__3prime 0 706397 706594 1 26 0.015151515151515152 198 3 "706363_706396" +BW25113_0684 fldA 0 706391 706921 -1 26 0.005649717514124294 531 3 "flavodoxin 1" +BW25113_0684__5prime fldA__5prime 0 706922 707119 -1 736 0.12626262626262627 198 25 "flavodoxin 1" +BW25113_0684__3prime fldA__3prime 0 706193 706390 -1 133 0.06565656565656566 198 13 "flavodoxin 1" +BW25113_0685 ybfE 0 707061 707354 -1 493 0.09863945578231292 294 29 "LexA-regulated protein and CopB family" +BW25113_0685__5prime ybfE__5prime 0 707355 707552 -1 415 0.09090909090909091 198 18 "LexA-regulated protein and CopB family" +BW25113_0685__3prime ybfE__3prime 0 706863 707060 -1 663 0.09595959595959595 198 19 "LexA-regulated protein and CopB family" +BW25113_0686 ybfF 0 707494 708258 -1 1692 0.10065359477124183 765 77 "acyl-CoA esterase" +BW25113_0686__5prime ybfF__5prime 0 708259 708456 -1 554 0.12626262626262627 198 25 "acyl-CoA esterase" +BW25113_0686__3prime ybfF__3prime 0 707296 707493 -1 435 0.10101010101010101 198 20 "acyl-CoA esterase" +BW25113_0687 seqA 0 708443 708988 1 1085 0.10256410256410256 546 56 "negative modulator of initiation of replication" +BW25113_0687__5prime seqA__5prime 0 708245 708442 1 537 0.1111111111111111 198 22 "negative modulator of initiation of replication" +BW25113_0687__3prime seqA__3prime 0 708989 709186 1 477 0.15151515151515152 198 30 "negative modulator of initiation of replication" +BW25113_0688 pgm 0 709014 710654 1 1848 0.07678244972577697 1641 126 "phosphoglucomutase" +BW25113_0688__5prime pgm__5prime 0 708816 709013 1 645 0.13636363636363635 198 27 "phosphoglucomutase" +BW25113_0688__3prime pgm__3prime 0 710655 710852 1 233 0.0707070707070707 198 14 "phosphoglucomutase" +710719_710817 710719_710817 0 710720 710817 1 228 0.1326530612244898 98 13 "710719_710817" +710719_710817__5prime 710719_710817__5prime 0 710522 710719 1 22 0.015151515151515152 198 3 "710719_710817" +710719_710817__3prime 710719_710817__3prime 0 710818 711015 1 1048 0.24242424242424243 198 48 "710719_710817" +BW25113_0689 ybfP 0 710868 711362 1 3323 0.27070707070707073 495 134 "lipoprotein" +BW25113_0689__5prime ybfP__5prime 0 710670 710867 1 261 0.09090909090909091 198 18 "lipoprotein" +BW25113_0689__3prime ybfP__3prime 0 711363 711560 1 1922 0.2878787878787879 198 57 "lipoprotein" +BW25113_0691 ybfG 0 711403 712053 -1 6822 0.38095238095238093 651 248 "711402_712053" +BW25113_0691__5prime ybfG__5prime 0 712054 712251 -1 1363 0.24242424242424243 198 48 "711402_712053" +BW25113_0691__3prime ybfG__3prime 0 711205 711402 -1 2021 0.3181818181818182 198 63 "711402_712053" +BW25113_4636 ybfI 0 712177 712326 -1 1993 0.35333333333333333 150 53 "712176_712326" +BW25113_4636__5prime ybfI__5prime 0 712327 712524 -1 5518 0.4444444444444444 198 88 "712176_712326" +BW25113_4636__3prime ybfI__3prime 0 711979 712176 -1 2156 0.29797979797979796 198 59 "712176_712326" +BW25113_0692 potE 0 712402 713721 -1 9518 0.175 1320 231 "putrescine/proton symporter: putrescine/ornithine antiporter" +BW25113_0692__5prime potE__5prime 0 713722 713919 -1 709 0.16666666666666666 198 33 "putrescine/proton symporter: putrescine/ornithine antiporter" +BW25113_0692__3prime potE__3prime 0 712204 712401 -1 1910 0.2727272727272727 198 54 "putrescine/proton symporter: putrescine/ornithine antiporter" +BW25113_0693 speF 0 713718 715916 -1 9084 0.14415643474306503 2199 317 "ornithine decarboxylase isozyme and inducible" +BW25113_0693__5prime speF__5prime 0 715917 716114 -1 882 0.1919191919191919 198 38 "ornithine decarboxylase isozyme and inducible" +BW25113_0693__3prime speF__3prime 0 713520 713717 -1 466 0.16161616161616163 198 32 "ornithine decarboxylase isozyme and inducible" +BW25113_4590 ybfK 0 716039 716296 1 4383 0.42248062015503873 258 109 "uncharacterized protein" +BW25113_4590__5prime ybfK__5prime 0 715841 716038 1 496 0.12626262626262627 198 25 "uncharacterized protein" +BW25113_4590__3prime ybfK__3prime 0 716297 716494 1 271 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_0694 kdpE 0 716512 717189 -1 2623 0.14749262536873156 678 100 "response regulator in two-component regulatory system with KdpD" +BW25113_0694__5prime kdpE__5prime 0 717190 717387 -1 311 0.07575757575757576 198 15 "response regulator in two-component regulatory system with KdpD" +BW25113_0694__3prime kdpE__3prime 0 716314 716511 -1 271 0.03535353535353535 198 7 "response regulator in two-component regulatory system with KdpD" +BW25113_0695 kdpD 0 717186 719870 -1 4546 0.08305400372439478 2685 223 "fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein" +BW25113_0695__5prime kdpD__5prime 0 719871 720068 -1 495 0.12626262626262627 198 25 "fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein" +BW25113_0695__3prime kdpD__3prime 0 716988 717185 -1 470 0.08080808080808081 198 16 "fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein" +BW25113_0696 kdpC 0 719863 720435 -1 1449 0.10471204188481675 573 60 "potassium translocating ATPase and subunit C" +BW25113_0696__5prime kdpC__5prime 0 720436 720633 -1 371 0.1111111111111111 198 22 "potassium translocating ATPase and subunit C" +BW25113_0696__3prime kdpC__3prime 0 719665 719862 -1 418 0.08585858585858586 198 17 "potassium translocating ATPase and subunit C" +BW25113_0697 kdpB 0 720444 722492 -1 5095 0.10004880429477794 2049 205 "potassium translocating ATPase and subunit B" +BW25113_0697__5prime kdpB__5prime 0 722493 722690 -1 519 0.12626262626262627 198 25 "potassium translocating ATPase and subunit B" +BW25113_0697__3prime kdpB__3prime 0 720246 720443 -1 778 0.14646464646464646 198 29 "potassium translocating ATPase and subunit B" +BW25113_0698 kdpA 0 722515 724188 -1 4070 0.1111111111111111 1674 186 "potassium translocating ATPase and subunit A" +BW25113_0698__5prime kdpA__5prime 0 724189 724386 -1 271 0.0707070707070707 198 14 "potassium translocating ATPase and subunit A" +BW25113_0698__3prime kdpA__3prime 0 722317 722514 -1 486 0.15151515151515152 198 30 "potassium translocating ATPase and subunit A" +BW25113_4513 kdpF 0 724188 724277 -1 252 0.12222222222222222 90 11 "potassium ion accessory transporter subunit" +BW25113_4513__5prime kdpF__5prime 0 724278 724475 -1 19 0.015151515151515152 198 3 "potassium ion accessory transporter subunit" +BW25113_4513__3prime kdpF__3prime 0 723990 724187 -1 573 0.10606060606060606 198 21 "potassium ion accessory transporter subunit" +BW25113_0699 ybfA 0 724590 724796 1 208 0.10628019323671498 207 22 "DUF2517 family protein" +BW25113_0699__5prime ybfA__5prime 0 724392 724589 1 27 0.010101010101010102 198 2 "DUF2517 family protein" +BW25113_0699__3prime ybfA__3prime 0 724797 724994 1 63 0.045454545454545456 198 9 "DUF2517 family protein" +BW25113_0700 rhsC 0 725039 729232 1 22256 0.21435383881735814 4194 899 "Rhs family putative polymorphic toxin" +BW25113_0700__5prime rhsC__5prime 0 724841 725038 1 85 0.045454545454545456 198 9 "Rhs family putative polymorphic toxin" +BW25113_0700__3prime rhsC__3prime 0 729233 729430 1 910 0.17676767676767677 198 35 "Rhs family putative polymorphic toxin" +BW25113_0702 ybfB 0 729232 729558 1 1175 0.17737003058103976 327 58 "putative membrane protein" +BW25113_0702__5prime ybfB__5prime 0 729034 729231 1 1006 0.21212121212121213 198 42 "putative membrane protein" +BW25113_0702__3prime ybfB__3prime 0 729559 729756 1 1132 0.32323232323232326 198 64 "putative membrane protein" +BW25113_0703 rhsO 0 729589 731109 1 20711 0.32938856015779094 1521 501 "729588_731109" +BW25113_0703__5prime rhsO__5prime 0 729391 729588 1 360 0.15151515151515152 198 30 "729588_731109" +BW25113_0703__3prime rhsO__3prime 0 731110 731307 1 515 0.20202020202020202 198 40 "729588_731109" +BW25113_0704 ybfC 0 731106 731675 1 2095 0.15964912280701754 570 91 "putative periplasmic protein" +BW25113_0704__5prime ybfC__5prime 0 730908 731105 1 2488 0.30808080808080807 198 61 "putative periplasmic protein" +BW25113_0704__3prime ybfC__3prime 0 731676 731873 1 140 0.045454545454545456 198 9 "putative periplasmic protein" +BW25113_4514 ybfQ 0 731901 732140 1 2254 0.25833333333333336 240 62 "731900_732140" +BW25113_4514__5prime ybfQ__5prime 0 731703 731900 1 140 0.045454545454545456 198 9 "731900_732140" +BW25113_4514__3prime ybfQ__3prime 0 732141 732338 1 103 0.04040404040404041 198 8 "731900_732140" +BW25113_0705 ybfL 0 732281 733417 1 12352 0.32717678100263853 1137 372 "732280_733417" +BW25113_0705__5prime ybfL__5prime 0 732083 732280 1 1581 0.17676767676767677 198 35 "732280_733417" +BW25113_0705__3prime ybfL__3prime 0 733418 733615 1 362 0.08080808080808081 198 16 "732280_733417" +BW25113_0706 ybfD 0 733548 734309 1 8101 0.2952755905511811 762 225 "H repeat-associated putative transposase" +BW25113_0706__5prime ybfD__5prime 0 733350 733547 1 1098 0.19696969696969696 198 39 "H repeat-associated putative transposase" +BW25113_0706__3prime ybfD__3prime 0 734310 734507 1 3163 0.35353535353535354 198 70 "H repeat-associated putative transposase" +BW25113_0707 ybgA 0 734457 734966 1 2111 0.13725490196078433 510 70 "DUF1722 family protein" +BW25113_0707__5prime ybgA__5prime 0 734259 734456 1 2817 0.36363636363636365 198 72 "DUF1722 family protein" +BW25113_0707__3prime ybgA__3prime 0 734967 735164 1 516 0.13636363636363635 198 27 "DUF1722 family protein" +BW25113_0708 phr 0 734963 736381 1 1942 0.0711768851303735 1419 101 "deoxyribodipyrimidine photolyase and FAD-binding" +BW25113_0708__5prime phr__5prime 0 734765 734962 1 288 0.09090909090909091 198 18 "deoxyribodipyrimidine photolyase and FAD-binding" +BW25113_0708__3prime phr__3prime 0 736382 736579 1 111 0.045454545454545456 198 9 "deoxyribodipyrimidine photolyase and FAD-binding" +736409_736515 736409_736515 0 736410 736515 1 53 0.04716981132075472 106 5 "736409_736515" +736409_736515__5prime 736409_736515__5prime 0 736212 736409 1 143 0.03535353535353535 198 7 "736409_736515" +736409_736515__3prime 736409_736515__3prime 0 736516 736713 1 335 0.11616161616161616 198 23 "736409_736515" +BW25113_0709 dtpD 0 736531 738012 -1 3669 0.10863697705802969 1482 161 "dipeptide and tripeptide permease D" +BW25113_0709__5prime dtpD__5prime 0 738013 738210 -1 12 0.005050505050505051 198 1 "dipeptide and tripeptide permease D" +BW25113_0709__3prime dtpD__3prime 0 736333 736530 -1 145 0.06565656565656566 198 13 "dipeptide and tripeptide permease D" +BW25113_0710 ybgI 0 738283 739026 1 1140 0.08064516129032258 744 60 "NIF3 family metal-binding protein" +BW25113_0710__5prime ybgI__5prime 0 738085 738282 1 82 0.045454545454545456 198 9 "NIF3 family metal-binding protein" +BW25113_0710__3prime ybgI__3prime 0 739027 739224 1 239 0.06060606060606061 198 12 "NIF3 family metal-binding protein" +BW25113_0711 ybgJ 0 739049 739705 1 1497 0.1080669710806697 657 71 "putative allophanate hydrolase and subunit 1" +BW25113_0711__5prime ybgJ__5prime 0 738851 739048 1 304 0.06565656565656566 198 13 "putative allophanate hydrolase and subunit 1" +BW25113_0711__3prime ybgJ__3prime 0 739706 739903 1 791 0.17676767676767677 198 35 "putative allophanate hydrolase and subunit 1" +BW25113_0712 ybgK 0 739699 740631 1 2624 0.11039657020364416 933 103 "putative allophanate hydrolase and subunit 2" +BW25113_0712__5prime ybgK__5prime 0 739501 739698 1 482 0.12626262626262627 198 25 "putative allophanate hydrolase and subunit 2" +BW25113_0712__3prime ybgK__3prime 0 740632 740829 1 148 0.050505050505050504 198 10 "putative allophanate hydrolase and subunit 2" +BW25113_0713 ybgL 0 740621 741355 1 797 0.06394557823129252 735 47 "UPF0271 family protein" +BW25113_0713__5prime ybgL__5prime 0 740423 740620 1 963 0.14646464646464646 198 29 "UPF0271 family protein" +BW25113_0713__3prime ybgL__3prime 0 741356 741553 1 308 0.08585858585858586 198 17 "UPF0271 family protein" +BW25113_0714 nei 0 741391 742182 1 1385 0.07828282828282829 792 62 "endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase" +BW25113_0714__5prime nei__5prime 0 741193 741390 1 276 0.05555555555555555 198 11 "endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase" +BW25113_0714__3prime nei__3prime 0 742183 742380 1 1055 0.10101010101010101 198 20 "endonuclease VIII/ 5-formyluracil/5-hydroxymethyluracil DNA glycosylase" +BW25113_0715 abrB 0 742179 743225 -1 3238 0.09742120343839542 1047 102 "regulator of aidB expression; inner membrane protein" +BW25113_0715__5prime abrB__5prime 0 743226 743423 -1 507 0.12121212121212122 198 24 "regulator of aidB expression; inner membrane protein" +BW25113_0715__3prime abrB__3prime 0 741981 742178 -1 123 0.05555555555555555 198 11 "regulator of aidB expression; inner membrane protein" +BW25113_0716 ybgO 0 743377 744438 -1 2526 0.12335216572504708 1062 131 "putative fimbrial protein" +BW25113_0716__5prime ybgO__5prime 0 744439 744636 -1 321 0.12121212121212122 198 24 "putative fimbrial protein" +BW25113_0716__3prime ybgO__3prime 0 743179 743376 -1 367 0.1111111111111111 198 22 "putative fimbrial protein" +BW25113_0717 ybgP 0 744435 745163 -1 1164 0.09465020576131687 729 69 "putative periplasmic pilin chaperone" +BW25113_0717__5prime ybgP__5prime 0 745164 745361 -1 646 0.15151515151515152 198 30 "putative periplasmic pilin chaperone" +BW25113_0717__3prime ybgP__3prime 0 744237 744434 -1 131 0.045454545454545456 198 9 "putative periplasmic pilin chaperone" +BW25113_0718 ybgQ 0 745178 747625 -1 9829 0.1642156862745098 2448 402 "putative outer membrane protein" +BW25113_0718__5prime ybgQ__5prime 0 747626 747823 -1 1590 0.3282828282828283 198 65 "putative outer membrane protein" +BW25113_0718__3prime ybgQ__3prime 0 744980 745177 -1 248 0.08585858585858586 198 17 "putative outer membrane protein" +BW25113_0719 ybgD 0 747685 748251 -1 10638 0.3897707231040564 567 221 "putative fimbrial-like adhesin protein" +BW25113_0719__5prime ybgD__5prime 0 748252 748449 -1 720 0.14646464646464646 198 29 "putative fimbrial-like adhesin protein" +BW25113_0719__3prime ybgD__3prime 0 747487 747684 -1 1387 0.2222222222222222 198 44 "putative fimbrial-like adhesin protein" +BW25113_0720 gltA 0 748641 749924 -1 2447 0.08255451713395638 1284 106 "citrate synthase" +BW25113_0720__5prime gltA__5prime 0 749925 750122 -1 199 0.0707070707070707 198 14 "citrate synthase" +BW25113_0720__3prime gltA__3prime 0 748443 748640 -1 154 0.03535353535353535 198 7 "citrate synthase" +BW25113_0721 sdhC 0 750633 751022 1 157 0.03333333333333333 390 13 "succinate dehydrogenase and membrane subunit and binds cytochrome b556" +BW25113_0721__5prime sdhC__5prime 0 750435 750632 1 499 0.10101010101010101 198 20 "succinate dehydrogenase and membrane subunit and binds cytochrome b556" +BW25113_0721__3prime sdhC__3prime 0 751023 751220 1 147 0.0707070707070707 198 14 "succinate dehydrogenase and membrane subunit and binds cytochrome b556" +BW25113_0722 sdhD 0 751016 751363 1 338 0.08333333333333333 348 29 "succinate dehydrogenase and membrane subunit and binds cytochrome b556" +BW25113_0722__5prime sdhD__5prime 0 750818 751015 1 106 0.03535353535353535 198 7 "succinate dehydrogenase and membrane subunit and binds cytochrome b556" +BW25113_0722__3prime sdhD__3prime 0 751364 751561 1 208 0.06060606060606061 198 12 "succinate dehydrogenase and membrane subunit and binds cytochrome b556" +BW25113_0723 sdhA 0 751363 753129 1 1406 0.04923599320882852 1767 87 "succinate dehydrogenase and flavoprotein subunit" +BW25113_0723__5prime sdhA__5prime 0 751165 751362 1 265 0.11616161616161616 198 23 "succinate dehydrogenase and flavoprotein subunit" +BW25113_0723__3prime sdhA__3prime 0 753130 753327 1 241 0.08585858585858586 198 17 "succinate dehydrogenase and flavoprotein subunit" +BW25113_0724 sdhB 0 753145 753861 1 635 0.07112970711297072 717 51 "succinate dehydrogenase and FeS subunit" +BW25113_0724__5prime sdhB__5prime 0 752947 753144 1 21 0.010101010101010102 198 2 "succinate dehydrogenase and FeS subunit" +BW25113_0724__3prime sdhB__3prime 0 753862 754059 1 71 0.030303030303030304 198 6 "succinate dehydrogenase and FeS subunit" +753864_753982 753864_753982 0 753865 753982 1 36 0.025423728813559324 118 3 "753864_753982" +753864_753982__5prime 753864_753982__5prime 0 753667 753864 1 134 0.06060606060606061 198 12 "753864_753982" +753864_753982__3prime 753864_753982__3prime 0 753983 754180 1 386 0.10101010101010101 198 20 "753864_753982" +BW25113_0726 sucA 0 754162 756963 1 739 0.021056388294075662 2802 59 "2-oxoglutarate decarboxylase and thiamine triphosphate-binding" +BW25113_0726__5prime sucA__5prime 0 753964 754161 1 370 0.10101010101010101 198 20 "2-oxoglutarate decarboxylase and thiamine triphosphate-binding" +BW25113_0726__3prime sucA__3prime 0 756964 757161 1 232 0.030303030303030304 198 6 "2-oxoglutarate decarboxylase and thiamine triphosphate-binding" +BW25113_0727 sucB 0 756978 758195 1 445 0.0180623973727422 1218 22 "dihydrolipoyltranssuccinase" +BW25113_0727__5prime sucB__5prime 0 756780 756977 1 172 0.025252525252525252 198 5 "dihydrolipoyltranssuccinase" +BW25113_0727__3prime sucB__3prime 0 758196 758393 1 303 0.08585858585858586 198 17 "dihydrolipoyltranssuccinase" +758217_758384 758217_758384 0 758218 758384 1 211 0.08982035928143713 167 15 "758217_758384" +758217_758384__5prime 758217_758384__5prime 0 758020 758217 1 300 0.06060606060606061 198 12 "758217_758384" +758217_758384__3prime 758217_758384__3prime 0 758385 758582 1 857 0.12121212121212122 198 24 "758217_758384" +BW25113_0728 sucC 0 758470 759636 1 1750 0.0702656383890317 1167 82 "succinyl-CoA synthetase and beta subunit" +BW25113_0728__5prime sucC__5prime 0 758272 758469 1 469 0.10101010101010101 198 20 "succinyl-CoA synthetase and beta subunit" +BW25113_0728__3prime sucC__3prime 0 759637 759834 1 420 0.0707070707070707 198 14 "succinyl-CoA synthetase and beta subunit" +BW25113_0729 sucD 0 759636 760505 1 1003 0.05172413793103448 870 45 "succinyl-CoA synthetase and NAD(P)-binding and alpha subunit" +BW25113_0729__5prime sucD__5prime 0 759438 759635 1 208 0.050505050505050504 198 10 "succinyl-CoA synthetase and NAD(P)-binding and alpha subunit" +BW25113_0729__3prime sucD__3prime 0 760506 760703 1 157 0.050505050505050504 198 10 "succinyl-CoA synthetase and NAD(P)-binding and alpha subunit" +BW25113_0730 mngR 0 760609 761331 -1 843 0.05532503457814661 723 40 "Transcriptional repressor for the mannosyl-D-glycerate catabolic operon" +BW25113_0730__5prime mngR__5prime 0 761332 761529 -1 160 0.050505050505050504 198 10 "Transcriptional repressor for the mannosyl-D-glycerate catabolic operon" +BW25113_0730__3prime mngR__3prime 0 760411 760608 -1 247 0.05555555555555555 198 11 "Transcriptional repressor for the mannosyl-D-glycerate catabolic operon" +BW25113_0731 mngA 0 761440 763416 1 3104 0.07486090035407182 1977 148 "fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component" +BW25113_0731__5prime mngA__5prime 0 761242 761439 1 155 0.025252525252525252 198 5 "fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component" +BW25113_0731__3prime mngA__3prime 0 763417 763614 1 656 0.14646464646464646 198 29 "fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component" +BW25113_0732 mngB 0 763434 766067 1 8243 0.1211085801063022 2634 319 "alpha-mannosidase" +BW25113_0732__5prime mngB__5prime 0 763236 763433 1 165 0.050505050505050504 198 10 "alpha-mannosidase" +BW25113_0732__3prime mngB__3prime 0 766068 766265 1 544 0.1414141414141414 198 28 "alpha-mannosidase" +766130_766229 766130_766229 0 766131 766229 1 305 0.1717171717171717 99 17 "766130_766229" +766130_766229__5prime 766130_766229__5prime 0 765933 766130 1 471 0.12121212121212122 198 24 "766130_766229" +766130_766229__3prime 766130_766229__3prime 0 766230 766427 1 288 0.06060606060606061 198 12 "766130_766229" +BW25113_0733 cydA 0 766914 768482 1 879 0.03824091778202677 1569 60 "cytochrome d terminal oxidase and subunit I" +BW25113_0733__5prime cydA__5prime 0 766716 766913 1 95 0.050505050505050504 198 10 "cytochrome d terminal oxidase and subunit I" +BW25113_0733__3prime cydA__3prime 0 768483 768680 1 88 0.025252525252525252 198 5 "cytochrome d terminal oxidase and subunit I" +BW25113_0734 cydB 0 768498 769637 1 810 0.058771929824561406 1140 67 "cytochrome d terminal oxidase and subunit II" +BW25113_0734__5prime cydB__5prime 0 768300 768497 1 245 0.07575757575757576 198 15 "cytochrome d terminal oxidase and subunit II" +BW25113_0734__3prime cydB__3prime 0 769638 769835 1 141 0.06565656565656566 198 13 "cytochrome d terminal oxidase and subunit II" +BW25113_4515 cydX 0 769652 769765 1 64 0.05263157894736842 114 6 "cytochrome d (bd-I) ubiquinol oxidase subunit X" +BW25113_4515__5prime cydX__5prime 0 769454 769651 1 216 0.08585858585858586 198 17 "cytochrome d (bd-I) ubiquinol oxidase subunit X" +BW25113_4515__3prime cydX__3prime 0 769766 769963 1 452 0.10606060606060606 198 21 "cytochrome d (bd-I) ubiquinol oxidase subunit X" +BW25113_0735 ybgE 0 769765 770058 1 452 0.07142857142857142 294 21 "putative inner membrane protein in cydABX-ybgE operon" +BW25113_0735__5prime ybgE__5prime 0 769567 769764 1 165 0.08585858585858586 198 17 "putative inner membrane protein in cydABX-ybgE operon" +BW25113_0735__3prime ybgE__3prime 0 770059 770256 1 462 0.08585858585858586 198 17 "putative inner membrane protein in cydABX-ybgE operon" +BW25113_0736 ybgC 0 770208 770612 1 608 0.08148148148148149 405 33 "acyl-CoA thioester hydrolase" +BW25113_0736__5prime ybgC__5prime 0 770010 770207 1 190 0.05555555555555555 198 11 "acyl-CoA thioester hydrolase" +BW25113_0736__3prime ybgC__3prime 0 770613 770810 1 219 0.09090909090909091 198 18 "acyl-CoA thioester hydrolase" +BW25113_0737 tolQ 0 770609 771301 1 928 0.08802308802308802 693 61 "membrane spanning protein in TolA-TolQ-TolR complex" +BW25113_0737__5prime tolQ__5prime 0 770411 770608 1 171 0.08585858585858586 198 17 "membrane spanning protein in TolA-TolQ-TolR complex" +BW25113_0737__3prime tolQ__3prime 0 771302 771499 1 847 0.18686868686868688 198 37 "membrane spanning protein in TolA-TolQ-TolR complex" +BW25113_0738 tolR 0 771305 771733 1 1375 0.13986013986013987 429 60 "membrane spanning protein in TolA-TolQ-TolR complex" +BW25113_0738__5prime tolR__5prime 0 771107 771304 1 301 0.08585858585858586 198 17 "membrane spanning protein in TolA-TolQ-TolR complex" +BW25113_0738__3prime tolR__3prime 0 771734 771931 1 679 0.12626262626262627 198 25 "membrane spanning protein in TolA-TolQ-TolR complex" +BW25113_0739 tolA 0 771798 773063 1 1472 0.05608214849921011 1266 71 "membrane anchored protein in TolA-TolQ-TolR complex" +BW25113_0739__5prime tolA__5prime 0 771600 771797 1 462 0.10606060606060606 198 21 "membrane anchored protein in TolA-TolQ-TolR complex" +BW25113_0739__3prime tolA__3prime 0 773064 773261 1 637 0.1414141414141414 198 28 "membrane anchored protein in TolA-TolQ-TolR complex" +BW25113_0740 tolB 0 773196 774488 1 2267 0.09126063418406806 1293 118 "periplasmic protein" +BW25113_0740__5prime tolB__5prime 0 772998 773195 1 544 0.12626262626262627 198 25 "periplasmic protein" +BW25113_0740__3prime tolB__3prime 0 774489 774686 1 188 0.09090909090909091 198 18 "periplasmic protein" +BW25113_0741 pal 0 774523 775044 1 1158 0.12835249042145594 522 67 "peptidoglycan-associated outer membrane lipoprotein" +BW25113_0741__5prime pal__5prime 0 774325 774522 1 350 0.06060606060606061 198 12 "peptidoglycan-associated outer membrane lipoprotein" +BW25113_0741__3prime pal__3prime 0 775045 775242 1 568 0.1414141414141414 198 28 "peptidoglycan-associated outer membrane lipoprotein" +BW25113_0742 ybgF 0 775054 775845 1 1710 0.10858585858585859 792 86 "periplasmic TolA-binding protein" +BW25113_0742__5prime ybgF__5prime 0 774856 775053 1 655 0.15151515151515152 198 30 "periplasmic TolA-binding protein" +BW25113_0742__3prime ybgF__3prime 0 775846 776043 1 6 0.005050505050505051 198 1 "periplasmic TolA-binding protein" +BW25113_0743 lysT 0 776010 776085 1 89 0.11842105263157894 76 9 "tRNA-Lys" +BW25113_0743__5prime lysT__5prime 0 775812 776009 1 15 0.010101010101010102 198 2 "tRNA-Lys" +BW25113_0743__3prime lysT__3prime 0 776086 776283 1 272 0.1414141414141414 198 28 "tRNA-Lys" +BW25113_0744 valT 0 776221 776296 1 121 0.14473684210526316 76 11 "tRNA-Val" +BW25113_0744__5prime valT__5prime 0 776023 776220 1 234 0.12626262626262627 198 25 "tRNA-Val" +BW25113_0744__3prime valT__3prime 0 776297 776494 1 495 0.10101010101010101 198 20 "tRNA-Val" +BW25113_0745 lysW 0 776299 776374 1 71 0.10526315789473684 76 8 "tRNA-Lys" +BW25113_0745__5prime lysW__5prime 0 776101 776298 1 294 0.14646464646464646 198 29 "tRNA-Lys" +BW25113_0745__3prime lysW__3prime 0 776375 776572 1 677 0.1414141414141414 198 28 "tRNA-Lys" +BW25113_0746 valZ 0 776524 776599 1 188 0.17105263157894737 76 13 "tRNA-Val" +BW25113_0746__5prime valZ__5prime 0 776326 776523 1 650 0.12626262626262627 198 25 "tRNA-Val" +BW25113_0746__3prime valZ__3prime 0 776600 776797 1 74 0.050505050505050504 198 10 "tRNA-Val" +BW25113_0747 lysY 0 776603 776678 1 0 0.0 76 0 "tRNA-Lys" +BW25113_0747__5prime lysY__5prime 0 776405 776602 1 786 0.16161616161616163 198 32 "tRNA-Lys" +BW25113_0747__3prime lysY__3prime 0 776679 776876 1 138 0.07575757575757576 198 15 "tRNA-Lys" +BW25113_0748 lysZ 0 776825 776900 1 84 0.07894736842105263 76 6 "tRNA-Lys" +BW25113_0748__5prime lysZ__5prime 0 776627 776824 1 131 0.0707070707070707 198 14 "tRNA-Lys" +BW25113_0748__3prime lysZ__3prime 0 776901 777098 1 293 0.10606060606060606 198 21 "tRNA-Lys" +BW25113_0749 lysQ 0 777033 777108 1 56 0.07894736842105263 76 6 "tRNA-Lys" +BW25113_0749__5prime lysQ__5prime 0 776835 777032 1 326 0.10606060606060606 198 21 "tRNA-Lys" +BW25113_0749__3prime lysQ__3prime 0 777109 777306 1 196 0.08585858585858586 198 17 "tRNA-Lys" +BW25113_0750 nadA 0 777541 778584 1 2175 0.08524904214559387 1044 89 "quinolinate synthase and subunit A" +BW25113_0750__5prime nadA__5prime 0 777343 777540 1 400 0.13131313131313133 198 26 "quinolinate synthase and subunit A" +BW25113_0750__3prime nadA__3prime 0 778585 778782 1 745 0.17676767676767677 198 35 "quinolinate synthase and subunit A" +BW25113_0751 pnuC 0 778622 779341 1 1847 0.12222222222222222 720 88 "nicotinamide riboside transporter" +BW25113_0751__5prime pnuC__5prime 0 778424 778621 1 329 0.08080808080808081 198 16 "nicotinamide riboside transporter" +BW25113_0751__3prime pnuC__3prime 0 779342 779539 1 297 0.09595959595959595 198 19 "nicotinamide riboside transporter" +BW25113_0752 zitB 0 779338 780279 -1 2311 0.11252653927813164 942 106 "zinc efflux system" +BW25113_0752__5prime zitB__5prime 0 780280 780477 -1 205 0.0707070707070707 198 14 "zinc efflux system" +BW25113_0752__3prime zitB__3prime 0 779140 779337 -1 639 0.13636363636363635 198 27 "zinc efflux system" +BW25113_0753 ybgS 0 780393 780773 -1 1687 0.15485564304461943 381 59 "putative periplasmic protein" +BW25113_0753__5prime ybgS__5prime 0 780774 780971 -1 280 0.09595959595959595 198 19 "putative periplasmic protein" +BW25113_0753__3prime ybgS__3prime 0 780195 780392 -1 509 0.15151515151515152 198 30 "putative periplasmic protein" +BW25113_0754 aroG 0 781089 782141 1 1824 0.07597340930674264 1053 80 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and phenylalanine repressible" +BW25113_0754__5prime aroG__5prime 0 780891 781088 1 142 0.05555555555555555 198 11 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and phenylalanine repressible" +BW25113_0754__3prime aroG__3prime 0 782142 782339 1 327 0.09090909090909091 198 18 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and phenylalanine repressible" +782190_782225 782190_782225 0 782191 782225 1 164 0.2 35 7 "782190_782225" +782190_782225__5prime 782190_782225__5prime 0 781993 782190 1 480 0.1111111111111111 198 22 "782190_782225" +782190_782225__3prime 782190_782225__3prime 0 782226 782423 1 114 0.03535353535353535 198 7 "782190_782225" +BW25113_0755 gpmA 0 782299 783051 -1 2156 0.10756972111553785 753 81 "phosphoglyceromutase 1" +BW25113_0755__5prime gpmA__5prime 0 783052 783249 -1 300 0.03535353535353535 198 7 "phosphoglyceromutase 1" +BW25113_0755__3prime gpmA__3prime 0 782101 782298 -1 257 0.0707070707070707 198 14 "phosphoglyceromutase 1" +BW25113_0756 galM 0 783253 784293 -1 2000 0.08645533141210375 1041 90 "aldose 1-epimerase; type-1 mutarotase" +BW25113_0756__5prime galM__5prime 0 784294 784491 -1 413 0.050505050505050504 198 10 "aldose 1-epimerase; type-1 mutarotase" +BW25113_0756__3prime galM__3prime 0 783055 783252 -1 308 0.04040404040404041 198 8 "aldose 1-epimerase; type-1 mutarotase" +BW25113_0757 galK 0 784287 785435 -1 2810 0.10182767624020887 1149 117 "galactokinase" +BW25113_0757__5prime galK__5prime 0 785436 785633 -1 290 0.09595959595959595 198 19 "galactokinase" +BW25113_0757__3prime galK__3prime 0 784089 784286 -1 342 0.08080808080808081 198 16 "galactokinase" +BW25113_0758 galT 0 785439 786485 -1 1917 0.08595988538681948 1047 90 "galactose-1-phosphate uridylyltransferase" +BW25113_0758__5prime galT__5prime 0 786486 786683 -1 396 0.08585858585858586 198 17 "galactose-1-phosphate uridylyltransferase" +BW25113_0758__3prime galT__3prime 0 785241 785438 -1 888 0.16161616161616163 198 32 "galactose-1-phosphate uridylyltransferase" +BW25113_0759 galE 0 786495 787511 -1 1929 0.08652900688298919 1017 88 "UDP-galactose-4-epimerase" +BW25113_0759__5prime galE__5prime 0 787512 787709 -1 86 0.04040404040404041 198 8 "UDP-galactose-4-epimerase" +BW25113_0759__3prime galE__3prime 0 786297 786494 -1 287 0.06060606060606061 198 12 "UDP-galactose-4-epimerase" +787719_787753 787719_787753 0 787720 787753 1 0 0.0 34 0 "787719_787753" +787719_787753__5prime 787719_787753__5prime 0 787522 787719 1 86 0.04040404040404041 198 8 "787719_787753" +787719_787753__3prime 787719_787753__3prime 0 787754 787951 1 647 0.15151515151515152 198 30 "787719_787753" +BW25113_0760 modF 0 787772 789244 -1 3818 0.1079429735234216 1473 159 "fused molybdate transporter subunits of ABC superfamily: ATP-binding components" +BW25113_0760__5prime modF__5prime 0 789245 789442 -1 1220 0.21717171717171718 198 43 "fused molybdate transporter subunits of ABC superfamily: ATP-binding components" +BW25113_0760__3prime modF__3prime 0 787574 787771 -1 287 0.0707070707070707 198 14 "fused molybdate transporter subunits of ABC superfamily: ATP-binding components" +BW25113_0761 modE 0 789312 790100 -1 3377 0.14575411913814956 789 115 "transcriptional repressor for the molybdenum transport operon modABC" +BW25113_0761__5prime modE__5prime 0 790101 790298 -1 426 0.13131313131313133 198 26 "transcriptional repressor for the molybdenum transport operon modABC" +BW25113_0761__3prime modE__3prime 0 789114 789311 -1 160 0.050505050505050504 198 10 "transcriptional repressor for the molybdenum transport operon modABC" +BW25113_0762 acrZ 0 790229 790378 1 101 0.04666666666666667 150 7 "AcrAB-TolC efflux pump accessory protein and membrane-associated" +BW25113_0762__5prime acrZ__5prime 0 790031 790228 1 441 0.12626262626262627 198 25 "AcrAB-TolC efflux pump accessory protein and membrane-associated" +BW25113_0762__3prime acrZ__3prime 0 790379 790576 1 129 0.03535353535353535 198 7 "AcrAB-TolC efflux pump accessory protein and membrane-associated" +BW25113_0763 modA 0 790545 791318 1 2167 0.12144702842377261 774 94 "molybdate transporter subunit" +BW25113_0763__5prime modA__5prime 0 790347 790544 1 129 0.03535353535353535 198 7 "molybdate transporter subunit" +BW25113_0763__3prime modA__3prime 0 791319 791516 1 558 0.14646464646464646 198 29 "molybdate transporter subunit" +BW25113_0764 modB 0 791318 792007 1 1519 0.1072463768115942 690 74 "molybdate transporter subunit" +BW25113_0764__5prime modB__5prime 0 791120 791317 1 628 0.15656565656565657 198 31 "molybdate transporter subunit" +BW25113_0764__3prime modB__3prime 0 792008 792205 1 353 0.08080808080808081 198 16 "molybdate transporter subunit" +BW25113_0765 modC 0 792010 793068 1 2136 0.08970727101038715 1059 95 "molybdate transporter subunit" +BW25113_0765__5prime modC__5prime 0 791812 792009 1 296 0.09595959595959595 198 19 "molybdate transporter subunit" +BW25113_0765__3prime modC__3prime 0 793069 793266 1 448 0.0707070707070707 198 14 "molybdate transporter subunit" +BW25113_0766 ybhA 0 793069 793887 -1 2075 0.11233211233211234 819 92 "pyridoxal phosphate (PLP) phosphatase" +BW25113_0766__5prime ybhA__5prime 0 793888 794085 -1 270 0.050505050505050504 198 10 "pyridoxal phosphate (PLP) phosphatase" +BW25113_0766__3prime ybhA__3prime 0 792871 793068 -1 485 0.09090909090909091 198 18 "pyridoxal phosphate (PLP) phosphatase" +BW25113_0767 pgl 0 794042 795037 1 1636 0.0893574297188755 996 89 "6-phosphogluconolactonase" +BW25113_0767__5prime pgl__5prime 0 793844 794041 1 332 0.0707070707070707 198 14 "6-phosphogluconolactonase" +BW25113_0767__3prime pgl__3prime 0 795038 795235 1 220 0.06060606060606061 198 12 "6-phosphogluconolactonase" +BW25113_0768 ybhD 0 795078 796031 -1 4363 0.16561844863731656 954 158 "putative DNA-binding transcriptional regulator" +BW25113_0768__5prime ybhD__5prime 0 796032 796229 -1 174 0.07575757575757576 198 15 "putative DNA-binding transcriptional regulator" +BW25113_0768__3prime ybhD__3prime 0 794880 795077 -1 340 0.09090909090909091 198 18 "putative DNA-binding transcriptional regulator" +BW25113_0769 ybhH 0 796215 797267 1 15321 0.33048433048433046 1053 348 "putative PrpF family isomerase" +BW25113_0769__5prime ybhH__5prime 0 796017 796214 1 156 0.0707070707070707 198 14 "putative PrpF family isomerase" +BW25113_0769__3prime ybhH__3prime 0 797268 797465 1 1290 0.23232323232323232 198 46 "putative PrpF family isomerase" +BW25113_0770 ybhI 0 797343 798776 1 16416 0.3305439330543933 1434 474 "putative transporter" +BW25113_0770__5prime ybhI__5prime 0 797145 797342 1 4115 0.29292929292929293 198 58 "putative transporter" +BW25113_0770__3prime ybhI__3prime 0 798777 798974 1 1764 0.4595959595959596 198 91 "putative transporter" +BW25113_0771 ybhJ 0 798959 801220 1 9349 0.1286472148541114 2262 291 "putative hydratase" +BW25113_0771__5prime ybhJ__5prime 0 798761 798958 1 1852 0.4898989898989899 198 97 "putative hydratase" +BW25113_0771__3prime ybhJ__3prime 0 801221 801418 1 439 0.10101010101010101 198 20 "putative hydratase" +801259_801437 801259_801437 0 801260 801437 1 429 0.11235955056179775 178 20 "801259_801437" +801259_801437__5prime 801259_801437__5prime 0 801062 801259 1 721 0.15151515151515152 198 30 "801259_801437" +801259_801437__3prime 801259_801437__3prime 0 801438 801635 1 588 0.12121212121212122 198 24 "801259_801437" +BW25113_0772 ybhC 0 801454 802737 -1 4193 0.12071651090342679 1284 155 "acyl-CoA thioesterase and lipoprotein" +BW25113_0772__5prime ybhC__5prime 0 802738 802935 -1 276 0.07575757575757576 198 15 "acyl-CoA thioesterase and lipoprotein" +BW25113_0772__3prime ybhC__3prime 0 801256 801453 -1 458 0.11616161616161616 198 23 "acyl-CoA thioesterase and lipoprotein" +BW25113_0773 ybhB 0 802889 803365 -1 1177 0.13417190775681342 477 64 "kinase inhibitor homolog and UPF0098 family" +BW25113_0773__5prime ybhB__5prime 0 803366 803563 -1 189 0.045454545454545456 198 9 "kinase inhibitor homolog and UPF0098 family" +BW25113_0773__3prime ybhB__3prime 0 802691 802888 -1 216 0.050505050505050504 198 10 "kinase inhibitor homolog and UPF0098 family" +BW25113_0774 bioA 0 803424 804713 -1 2517 0.1 1290 129 "7 and 8-diaminopelargonic acid synthase and PLP-dependent" +BW25113_0774__5prime bioA__5prime 0 804714 804911 -1 296 0.0707070707070707 198 14 "7 and 8-diaminopelargonic acid synthase and PLP-dependent" +BW25113_0774__3prime bioA__3prime 0 803226 803423 -1 166 0.0707070707070707 198 14 "7 and 8-diaminopelargonic acid synthase and PLP-dependent" +BW25113_0775 bioB 0 804800 805840 1 2048 0.09990393852065321 1041 104 "biotin synthase" +BW25113_0775__5prime bioB__5prime 0 804602 804799 1 540 0.11616161616161616 198 23 "biotin synthase" +BW25113_0775__3prime bioB__3prime 0 805841 806038 1 392 0.08585858585858586 198 17 "biotin synthase" +BW25113_0776 bioF 0 805837 806991 1 2459 0.1038961038961039 1155 120 "8-amino-7-oxononanoate synthase" +BW25113_0776__5prime bioF__5prime 0 805639 805836 1 244 0.0707070707070707 198 14 "8-amino-7-oxononanoate synthase" +BW25113_0776__3prime bioF__3prime 0 806992 807189 1 541 0.12626262626262627 198 25 "8-amino-7-oxononanoate synthase" +BW25113_0777 bioC 0 806978 807733 1 2682 0.14417989417989419 756 109 "malonyl-ACP O-methyltransferase and SAM-dependent" +BW25113_0777__5prime bioC__5prime 0 806780 806977 1 280 0.0707070707070707 198 14 "malonyl-ACP O-methyltransferase and SAM-dependent" +BW25113_0777__3prime bioC__3prime 0 807734 807931 1 165 0.050505050505050504 198 10 "malonyl-ACP O-methyltransferase and SAM-dependent" +BW25113_0778 bioD 0 807726 808403 1 1053 0.11356932153392331 678 77 "dethiobiotin synthetase" +BW25113_0778__5prime bioD__5prime 0 807528 807725 1 514 0.12121212121212122 198 24 "dethiobiotin synthetase" +BW25113_0778__3prime bioD__3prime 0 808404 808601 1 269 0.08585858585858586 198 17 "dethiobiotin synthetase" +BW25113_0779 uvrB 0 808982 811003 1 4413 0.08902077151335312 2022 180 "excinulease of nucleotide excision repair and DNA damage recognition component" +BW25113_0779__5prime uvrB__5prime 0 808784 808981 1 193 0.05555555555555555 198 11 "excinulease of nucleotide excision repair and DNA damage recognition component" +BW25113_0779__3prime uvrB__3prime 0 811004 811201 1 388 0.09595959595959595 198 19 "excinulease of nucleotide excision repair and DNA damage recognition component" +811040_811137 811040_811137 0 811041 811137 1 291 0.1134020618556701 97 11 "811040_811137" +811040_811137__5prime 811040_811137__5prime 0 810843 811040 1 342 0.07575757575757576 198 15 "811040_811137" +811040_811137__3prime 811040_811137__3prime 0 811138 811335 1 379 0.10101010101010101 198 20 "811040_811137" +BW25113_0780 ybhK 0 811195 812103 -1 1552 0.09350935093509351 909 85 "putative NAD(P)-binding transferase" +BW25113_0780__5prime ybhK__5prime 0 812104 812301 -1 614 0.13131313131313133 198 26 "putative NAD(P)-binding transferase" +BW25113_0780__3prime ybhK__3prime 0 810997 811194 -1 365 0.08080808080808081 198 16 "putative NAD(P)-binding transferase" +BW25113_0781 moaA 0 812500 813489 1 2059 0.09292929292929293 990 92 "molybdopterin biosynthesis protein A" +BW25113_0781__5prime moaA__5prime 0 812302 812499 1 303 0.1111111111111111 198 22 "molybdopterin biosynthesis protein A" +BW25113_0781__3prime moaA__3prime 0 813490 813687 1 240 0.050505050505050504 198 10 "molybdopterin biosynthesis protein A" +BW25113_0782 moaB 0 813511 814023 1 1501 0.12475633528265107 513 64 "inactive molybdopterin adenylyltransferase" +BW25113_0782__5prime moaB__5prime 0 813313 813510 1 551 0.10101010101010101 198 20 "inactive molybdopterin adenylyltransferase" +BW25113_0782__3prime moaB__3prime 0 814024 814221 1 608 0.09595959595959595 198 19 "inactive molybdopterin adenylyltransferase" +BW25113_0783 moaC 0 814026 814511 1 928 0.07613168724279835 486 37 "molybdopterin biosynthesis and protein C" +BW25113_0783__5prime moaC__5prime 0 813828 814025 1 449 0.08585858585858586 198 17 "molybdopterin biosynthesis and protein C" +BW25113_0783__3prime moaC__3prime 0 814512 814709 1 179 0.05555555555555555 198 11 "molybdopterin biosynthesis and protein C" +BW25113_0784 moaD 0 814504 814749 1 179 0.044715447154471545 246 11 "molybdopterin synthase and small subunit" +BW25113_0784__5prime moaD__5prime 0 814306 814503 1 185 0.06060606060606061 198 12 "molybdopterin synthase and small subunit" +BW25113_0784__3prime moaD__3prime 0 814750 814947 1 730 0.15151515151515152 198 30 "molybdopterin synthase and small subunit" +BW25113_0785 moaE 0 814751 815203 1 1135 0.11920529801324503 453 54 "molybdopterin synthase and large subunit" +BW25113_0785__5prime moaE__5prime 0 814553 814750 1 134 0.050505050505050504 198 10 "molybdopterin synthase and large subunit" +BW25113_0785__3prime moaE__3prime 0 815204 815401 1 698 0.11616161616161616 198 23 "molybdopterin synthase and large subunit" +815213_815240 815213_815240 0 815214 815240 1 96 0.14814814814814814 27 4 "815213_815240" +815213_815240__5prime 815213_815240__5prime 0 815016 815213 1 219 0.06565656565656566 198 13 "815213_815240" +815213_815240__3prime 815213_815240__3prime 0 815241 815438 1 658 0.12121212121212122 198 24 "815213_815240" +BW25113_0786 ybhL 0 815340 816044 1 4075 0.2297872340425532 705 162 "UPF0005 family inner membrane protein" +BW25113_0786__5prime ybhL__5prime 0 815142 815339 1 449 0.09090909090909091 198 18 "UPF0005 family inner membrane protein" +BW25113_0786__3prime ybhL__3prime 0 816045 816242 1 574 0.15656565656565657 198 31 "UPF0005 family inner membrane protein" +BW25113_0787 ybhM 0 816249 816962 1 11635 0.3011204481792717 714 215 "UPF0005 family inner membrane protein" +BW25113_0787__5prime ybhM__5prime 0 816051 816248 1 574 0.15656565656565657 198 31 "UPF0005 family inner membrane protein" +BW25113_0787__3prime ybhM__3prime 0 816963 817160 1 1094 0.17676767676767677 198 35 "UPF0005 family inner membrane protein" +BW25113_0788 ybhN 0 816998 817954 -1 2993 0.10867293625914315 957 104 "UPF0104 family inner membrane protein" +BW25113_0788__5prime ybhN__5prime 0 817955 818152 -1 143 0.03535353535353535 198 7 "UPF0104 family inner membrane protein" +BW25113_0788__3prime ybhN__3prime 0 816800 816997 -1 3841 0.30303030303030304 198 60 "UPF0104 family inner membrane protein" +BW25113_0789 clsB 0 817954 819195 -1 1359 0.05475040257648953 1242 68 "cardiolipin synthase 2" +BW25113_0789__5prime clsB__5prime 0 819196 819393 -1 185 0.050505050505050504 198 10 "cardiolipin synthase 2" +BW25113_0789__3prime clsB__3prime 0 817756 817953 -1 295 0.0707070707070707 198 14 "cardiolipin synthase 2" +BW25113_0790 ybhP 0 819192 819953 -1 865 0.07086614173228346 762 54 "endo/exonuclease/phosphatase family protein" +BW25113_0790__5prime ybhP__5prime 0 819954 820151 -1 628 0.10606060606060606 198 21 "endo/exonuclease/phosphatase family protein" +BW25113_0790__3prime ybhP__3prime 0 818994 819191 -1 277 0.07575757575757576 198 15 "endo/exonuclease/phosphatase family protein" +BW25113_0791 ybhQ 0 820086 820496 1 1278 0.12408759124087591 411 51 "inner membrane protein" +BW25113_0791__5prime ybhQ__5prime 0 819888 820085 1 533 0.11616161616161616 198 23 "inner membrane protein" +BW25113_0791__3prime ybhQ__3prime 0 820497 820694 1 277 0.09595959595959595 198 19 "inner membrane protein" +BW25113_0792 ybhR 0 820458 821564 -1 2181 0.10478771454381211 1107 116 "inner membrane putative ABC superfamily transporter permease" +BW25113_0792__5prime ybhR__5prime 0 821565 821762 -1 247 0.06060606060606061 198 12 "inner membrane putative ABC superfamily transporter permease" +BW25113_0792__3prime ybhR__3prime 0 820260 820457 -1 466 0.10606060606060606 198 21 "inner membrane putative ABC superfamily transporter permease" +BW25113_0793 ybhS 0 821575 822708 -1 2046 0.06437389770723104 1134 73 "inner membrane putative ABC superfamily transporter permease" +BW25113_0793__5prime ybhS__5prime 0 822709 822906 -1 565 0.14646464646464646 198 29 "inner membrane putative ABC superfamily transporter permease" +BW25113_0793__3prime ybhS__3prime 0 821377 821574 -1 485 0.12121212121212122 198 24 "inner membrane putative ABC superfamily transporter permease" +BW25113_0794 ybhF 0 822701 824437 -1 3591 0.1001727115716753 1737 174 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0794__5prime ybhF__5prime 0 824438 824635 -1 340 0.09090909090909091 198 18 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0794__3prime ybhF__3prime 0 822503 822700 -1 272 0.05555555555555555 198 11 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0795 ybhG 0 824430 825428 -1 2141 0.1001001001001001 999 100 "putative membrane fusion protein (MFP) component of efflux pump and membrane anchor" +BW25113_0795__5prime ybhG__5prime 0 825429 825626 -1 91 0.015151515151515152 198 3 "putative membrane fusion protein (MFP) component of efflux pump and membrane anchor" +BW25113_0795__3prime ybhG__3prime 0 824232 824429 -1 607 0.15656565656565657 198 31 "putative membrane fusion protein (MFP) component of efflux pump and membrane anchor" +BW25113_0796 ybiH 0 825428 826099 -1 1161 0.0818452380952381 672 55 "DUF1956 domain-containing tetR family putative transcriptional regulator" +BW25113_0796__5prime ybiH__5prime 0 826100 826297 -1 362 0.1111111111111111 198 22 "DUF1956 domain-containing tetR family putative transcriptional regulator" +BW25113_0796__3prime ybiH__3prime 0 825230 825427 -1 372 0.11616161616161616 198 23 "DUF1956 domain-containing tetR family putative transcriptional regulator" +BW25113_0797 rhlE 0 826328 827692 1 2485 0.09377289377289377 1365 128 "ATP-dependent RNA helicase" +BW25113_0797__5prime rhlE__5prime 0 826130 826327 1 362 0.11616161616161616 198 23 "ATP-dependent RNA helicase" +BW25113_0797__3prime rhlE__3prime 0 827693 827890 1 177 0.050505050505050504 198 10 "ATP-dependent RNA helicase" +827744_827842 827744_827842 0 827745 827842 1 63 0.04081632653061224 98 4 "827744_827842" +827744_827842__5prime 827744_827842__5prime 0 827547 827744 1 233 0.08080808080808081 198 16 "827744_827842" +827744_827842__3prime 827744_827842__3prime 0 827843 828040 1 151 0.06565656565656566 198 13 "827744_827842" +BW25113_0798 ybiA 0 827924 828406 -1 782 0.06418219461697723 483 31 "DUF1768 family protein" +BW25113_0798__5prime ybiA__5prime 0 828407 828604 -1 398 0.0707070707070707 198 14 "DUF1768 family protein" +BW25113_0798__3prime ybiA__3prime 0 827726 827923 -1 171 0.0707070707070707 198 14 "DUF1768 family protein" +BW25113_0799 dinG 0 828526 830676 1 4024 0.08693630869363086 2151 187 "ATP-dependent DNA helicase" +BW25113_0799__5prime dinG__5prime 0 828328 828525 1 338 0.06060606060606061 198 12 "ATP-dependent DNA helicase" +BW25113_0799__3prime dinG__3prime 0 830677 830874 1 553 0.16161616161616163 198 32 "ATP-dependent DNA helicase" +BW25113_0800 ybiB 0 830704 831666 1 2592 0.1059190031152648 963 102 "putative family 3 glycosyltransferase" +BW25113_0800__5prime ybiB__5prime 0 830506 830703 1 242 0.0707070707070707 198 14 "putative family 3 glycosyltransferase" +BW25113_0800__3prime ybiB__3prime 0 831667 831864 1 147 0.015151515151515152 198 3 "putative family 3 glycosyltransferase" +831677_831701 831677_831701 0 831678 831701 1 0 0.0 24 0 "831677_831701" +831677_831701__5prime 831677_831701__5prime 0 831480 831677 1 281 0.045454545454545456 198 9 "831677_831701" +831677_831701__3prime 831677_831701__3prime 0 831702 831899 1 248 0.050505050505050504 198 10 "831677_831701" +BW25113_0801 ybiC 0 831807 832892 1 2447 0.08839779005524862 1086 96 "putative dehydrogenase" +BW25113_0801__5prime ybiC__5prime 0 831609 831806 1 143 0.025252525252525252 198 5 "putative dehydrogenase" +BW25113_0801__3prime ybiC__3prime 0 832893 833090 1 895 0.1111111111111111 198 22 "putative dehydrogenase" +832994_833117 832994_833117 0 832995 833117 1 658 0.08130081300813008 123 10 "832994_833117" +832994_833117__5prime 832994_833117__5prime 0 832797 832994 1 436 0.09090909090909091 198 18 "832994_833117" +832994_833117__3prime 832994_833117__3prime 0 833118 833315 1 83 0.04040404040404041 198 8 "832994_833117" +BW25113_0802 ybiJ 0 833121 833381 -1 194 0.04980842911877394 261 13 "DUF1471 family putative periplasmic protein" +BW25113_0802__5prime ybiJ__5prime 0 833382 833579 -1 208 0.06565656565656566 198 13 "DUF1471 family putative periplasmic protein" +BW25113_0802__3prime ybiJ__3prime 0 832923 833120 -1 998 0.12121212121212122 198 24 "DUF1471 family putative periplasmic protein" +BW25113_0803 ybiI 0 833646 833912 -1 655 0.1198501872659176 267 32 "DksA-type zinc finger protein" +BW25113_0803__5prime ybiI__5prime 0 833913 834110 -1 276 0.050505050505050504 198 10 "DksA-type zinc finger protein" +BW25113_0803__3prime ybiI__3prime 0 833448 833645 -1 153 0.06060606060606061 198 12 "DksA-type zinc finger protein" +BW25113_0804 ybiX 0 833986 834663 -1 1258 0.09882005899705015 678 67 "Fe(II)-dependent oxygenase superfamily protein" +BW25113_0804__5prime ybiX__5prime 0 834664 834861 -1 131 0.015151515151515152 198 3 "Fe(II)-dependent oxygenase superfamily protein" +BW25113_0804__3prime ybiX__3prime 0 833788 833985 -1 639 0.1414141414141414 198 28 "Fe(II)-dependent oxygenase superfamily protein" +BW25113_0805 fiu 0 834705 836987 -1 4047 0.08234778799824792 2283 188 "catecholate siderophore receptor Fiu" +BW25113_0805__5prime fiu__5prime 0 836988 837185 -1 5 0.005050505050505051 198 1 "catecholate siderophore receptor Fiu" +BW25113_0805__3prime fiu__3prime 0 834507 834704 -1 102 0.050505050505050504 198 10 "catecholate siderophore receptor Fiu" +BW25113_0806 mcbA 0 837252 837512 -1 382 0.06896551724137931 261 18 "colanic acid mucoidy stimulation protein" +BW25113_0806__5prime mcbA__5prime 0 837513 837710 -1 297 0.025252525252525252 198 5 "colanic acid mucoidy stimulation protein" +BW25113_0806__3prime mcbA__3prime 0 837054 837251 -1 70 0.025252525252525252 198 5 "colanic acid mucoidy stimulation protein" +BW25113_0807 rlmF 0 837788 838714 1 2174 0.10679611650485436 927 99 "23S rRNA m(6)A1618 methyltransferase and SAM-dependent" +BW25113_0807__5prime rlmF__5prime 0 837590 837787 1 157 0.005050505050505051 198 1 "23S rRNA m(6)A1618 methyltransferase and SAM-dependent" +BW25113_0807__3prime rlmF__3prime 0 838715 838912 1 891 0.13131313131313133 198 26 "23S rRNA m(6)A1618 methyltransferase and SAM-dependent" +BW25113_0808 ybiO 0 838711 840936 -1 6151 0.09883198562443846 2226 220 "mechanosensitive channel protein and intermediate conductance" +BW25113_0808__5prime ybiO__5prime 0 840937 841134 -1 353 0.06060606060606061 198 12 "mechanosensitive channel protein and intermediate conductance" +BW25113_0808__3prime ybiO__3prime 0 838513 838710 -1 388 0.09595959595959595 198 19 "mechanosensitive channel protein and intermediate conductance" +841086_841185 841086_841185 0 841087 841185 1 304 0.16161616161616163 99 16 "841086_841185" +841086_841185__5prime 841086_841185__5prime 0 840889 841086 1 564 0.06565656565656566 198 13 "841086_841185" +841086_841185__3prime 841086_841185__3prime 0 841186 841383 1 92 0.04040404040404041 198 8 "841086_841185" +BW25113_0809 glnQ 0 841197 841919 -1 954 0.08437067773167359 723 61 "glutamine transporter subunit" +BW25113_0809__5prime glnQ__5prime 0 841920 842117 -1 420 0.09595959595959595 198 19 "glutamine transporter subunit" +BW25113_0809__3prime glnQ__3prime 0 840999 841196 -1 418 0.11616161616161616 198 23 "glutamine transporter subunit" +BW25113_0810 glnP 0 841916 842575 -1 1074 0.08181818181818182 660 54 "glutamine transporter subunit" +BW25113_0810__5prime glnP__5prime 0 842576 842773 -1 492 0.10101010101010101 198 20 "glutamine transporter subunit" +BW25113_0810__3prime glnP__3prime 0 841718 841915 -1 239 0.10606060606060606 198 21 "glutamine transporter subunit" +BW25113_0811 glnH 0 842714 843460 -1 2068 0.107095046854083 747 80 "glutamine transporter subunit" +BW25113_0811__5prime glnH__5prime 0 843461 843658 -1 199 0.07575757575757576 198 15 "glutamine transporter subunit" +BW25113_0811__3prime glnH__3prime 0 842516 842713 -1 468 0.09090909090909091 198 18 "glutamine transporter subunit" +842815_842970 842815_842970 0 842816 842970 1 484 0.10967741935483871 155 17 "842815_842970" +842815_842970__5prime 842815_842970__5prime 0 842618 842815 1 762 0.15151515151515152 198 30 "842815_842970" +842815_842970__3prime 842815_842970__3prime 0 842971 843168 1 643 0.12121212121212122 198 24 "842815_842970" +BW25113_0812 dps 0 843864 844367 -1 2210 0.17857142857142858 504 90 "Fe-binding and storage protein; stress-inducible DNA-binding protetin" +BW25113_0812__5prime dps__5prime 0 844368 844565 -1 733 0.15151515151515152 198 30 "Fe-binding and storage protein; stress-inducible DNA-binding protetin" +BW25113_0812__3prime dps__3prime 0 843666 843863 -1 315 0.0707070707070707 198 14 "Fe-binding and storage protein; stress-inducible DNA-binding protetin" +BW25113_0813 rhtA 0 844666 845553 -1 3586 0.15427927927927929 888 137 "threonine and homoserine efflux system" +BW25113_0813__5prime rhtA__5prime 0 845554 845751 -1 687 0.1111111111111111 198 22 "threonine and homoserine efflux system" +BW25113_0813__3prime rhtA__3prime 0 844468 844665 -1 39 0.020202020202020204 198 4 "threonine and homoserine efflux system" +BW25113_0814 ompX 0 845906 846421 1 1649 0.15310077519379844 516 79 "outer membrane protein X" +BW25113_0814__5prime ompX__5prime 0 845708 845905 1 51 0.020202020202020204 198 4 "outer membrane protein X" +BW25113_0814__3prime ompX__3prime 0 846422 846619 1 88 0.04040404040404041 198 8 "outer membrane protein X" +BW25113_0815 ybiP 0 846470 848053 -1 4394 0.12121212121212122 1584 192 "putative EptAB family phosphoethanolamine transferase and inner membrane protein" +BW25113_0815__5prime ybiP__5prime 0 848054 848251 -1 684 0.15151515151515152 198 30 "putative EptAB family phosphoethanolamine transferase and inner membrane protein" +BW25113_0815__3prime ybiP__3prime 0 846272 846469 -1 505 0.13131313131313133 198 26 "putative EptAB family phosphoethanolamine transferase and inner membrane protein" +BW25113_4705 mntS 0 848325 848453 -1 147 0.10852713178294573 129 14 "Mn(2)-response protein and MntR-repressed" +BW25113_4705__5prime mntS__5prime 0 848454 848651 -1 416 0.1111111111111111 198 22 "Mn(2)-response protein and MntR-repressed" +BW25113_4705__3prime mntS__3prime 0 848127 848324 -1 434 0.09595959595959595 198 19 "Mn(2)-response protein and MntR-repressed" +BW25113_0817 mntR 0 848639 849106 1 1015 0.09188034188034189 468 43 "Mn(2+)-responsive manganese regulon transcriptional regulator" +BW25113_0817__5prime mntR__5prime 0 848441 848638 1 416 0.1111111111111111 198 22 "Mn(2+)-responsive manganese regulon transcriptional regulator" +BW25113_0817__3prime mntR__3prime 0 849107 849304 1 507 0.13131313131313133 198 26 "Mn(2+)-responsive manganese regulon transcriptional regulator" +BW25113_0818 ybiR 0 849103 850221 1 2044 0.1063449508489723 1119 119 "putative transporter" +BW25113_0818__5prime ybiR__5prime 0 848905 849102 1 246 0.08080808080808081 198 16 "putative transporter" +BW25113_0818__3prime ybiR__3prime 0 850222 850419 1 650 0.09595959595959595 198 19 "putative transporter" +BW25113_0819 ldtB 0 850280 851200 -1 3754 0.14223669923995658 921 131 "L and D-transpeptidase linking Lpp to murein" +BW25113_0819__5prime ldtB__5prime 0 851201 851398 -1 434 0.1111111111111111 198 22 "L and D-transpeptidase linking Lpp to murein" +BW25113_0819__3prime ldtB__3prime 0 850082 850279 -1 435 0.12626262626262627 198 25 "L and D-transpeptidase linking Lpp to murein" +BW25113_0820 ybiT 0 851419 853011 1 2519 0.08035153797865663 1593 128 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0820__5prime ybiT__5prime 0 851221 851418 1 561 0.13131313131313133 198 26 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0820__3prime ybiT__3prime 0 853012 853209 1 604 0.12121212121212122 198 24 "putative transporter subunit of ABC superfamily: ATP-binding component" +853071_853169 853071_853169 0 853072 853169 1 152 0.061224489795918366 98 6 "853071_853169" +853071_853169__5prime 853071_853169__5prime 0 852874 853071 1 458 0.1111111111111111 198 22 "853071_853169" +853071_853169__3prime 853071_853169__3prime 0 853170 853367 1 376 0.09595959595959595 198 19 "853071_853169" +BW25113_0821 ybiU 0 853252 854517 -1 3669 0.11137440758293839 1266 141 "DUF1479 family protein" +BW25113_0821__5prime ybiU__5prime 0 854518 854715 -1 254 0.06565656565656566 198 13 "DUF1479 family protein" +BW25113_0821__3prime ybiU__3prime 0 853054 853251 -1 381 0.1111111111111111 198 22 "DUF1479 family protein" +BW25113_0822 ybiV 0 854669 855484 -1 1770 0.07965686274509803 816 65 "sugar phosphatase; preference for fructose-1-P and ribose-5-P and glucose-6-P" +BW25113_0822__5prime ybiV__5prime 0 855485 855682 -1 224 0.050505050505050504 198 10 "sugar phosphatase; preference for fructose-1-P and ribose-5-P and glucose-6-P" +BW25113_0822__3prime ybiV__3prime 0 854471 854668 -1 251 0.03535353535353535 198 7 "sugar phosphatase; preference for fructose-1-P and ribose-5-P and glucose-6-P" +BW25113_0823 ybiW 0 855630 858062 -1 5437 0.09658857377722976 2433 235 "putative pyruvate formate lyase" +BW25113_0823__5prime ybiW__5prime 0 858063 858260 -1 144 0.025252525252525252 198 5 "putative pyruvate formate lyase" +BW25113_0823__3prime ybiW__3prime 0 855432 855629 -1 91 0.015151515151515152 198 3 "putative pyruvate formate lyase" +BW25113_0824 ybiY 0 858068 858967 -1 1631 0.09666666666666666 900 87 "putative pyruvate formate lyase activating enzyme" +BW25113_0824__5prime ybiY__5prime 0 858968 859165 -1 121 0.045454545454545456 198 9 "putative pyruvate formate lyase activating enzyme" +BW25113_0824__3prime ybiY__3prime 0 857870 858067 -1 522 0.09595959595959595 198 19 "putative pyruvate formate lyase activating enzyme" +BW25113_0825 fsaA 0 859098 859760 1 1105 0.07541478129713423 663 50 "fructose-6-phosphate aldolase 1" +BW25113_0825__5prime fsaA__5prime 0 858900 859097 1 164 0.0707070707070707 198 14 "fructose-6-phosphate aldolase 1" +BW25113_0825__3prime fsaA__3prime 0 859761 859958 1 188 0.045454545454545456 198 9 "fructose-6-phosphate aldolase 1" +859788_859826 859788_859826 0 859789 859826 1 0 0.0 38 0 "859788_859826" +859788_859826__5prime 859788_859826__5prime 0 859591 859788 1 453 0.10606060606060606 198 21 "859788_859826" +859788_859826__3prime 859788_859826__3prime 0 859827 860024 1 182 0.025252525252525252 198 5 "859788_859826" +BW25113_0826 moeB 0 859836 860585 -1 1530 0.08266666666666667 750 62 "molybdopterin synthase sulfurylase" +BW25113_0826__5prime moeB__5prime 0 860586 860783 -1 784 0.1717171717171717 198 34 "molybdopterin synthase sulfurylase" +BW25113_0826__3prime moeB__3prime 0 859638 859835 -1 271 0.08080808080808081 198 16 "molybdopterin synthase sulfurylase" +BW25113_0827 moeA 0 860585 861820 -1 2406 0.09870550161812297 1236 122 "molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein" +BW25113_0827__5prime moeA__5prime 0 861821 862018 -1 95 0.045454545454545456 198 9 "molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein" +BW25113_0827__3prime moeA__3prime 0 860387 860584 -1 260 0.07575757575757576 198 15 "molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein" +BW25113_0828 iaaA 0 862024 862989 1 2315 0.12525879917184266 966 121 "Isoaspartyl peptidase" +BW25113_0828__5prime iaaA__5prime 0 861826 862023 1 95 0.045454545454545456 198 9 "Isoaspartyl peptidase" +BW25113_0828__3prime iaaA__3prime 0 862990 863187 1 664 0.12121212121212122 198 24 "Isoaspartyl peptidase" +BW25113_0829 gsiA 0 862976 864847 1 5776 0.11217948717948718 1872 210 "glutathione transporter ATP-binding protein and ABC superfamily" +BW25113_0829__5prime gsiA__5prime 0 862778 862975 1 500 0.12121212121212122 198 24 "glutathione transporter ATP-binding protein and ABC superfamily" +BW25113_0829__3prime gsiA__3prime 0 864848 865045 1 809 0.11616161616161616 198 23 "glutathione transporter ATP-binding protein and ABC superfamily" +BW25113_0830 gsiB 0 864867 866405 1 3685 0.09096816114359974 1539 140 "glutathione periplasmic binding protein and ABC superfamily transporter" +BW25113_0830__5prime gsiB__5prime 0 864669 864866 1 380 0.09090909090909091 198 18 "glutathione periplasmic binding protein and ABC superfamily transporter" +BW25113_0830__3prime gsiB__3prime 0 866406 866603 1 144 0.06565656565656566 198 13 "glutathione periplasmic binding protein and ABC superfamily transporter" +BW25113_0831 gsiC 0 866423 867343 1 1522 0.0998914223669924 921 92 "glutathione transporter and permease component and ABC superfamily" +BW25113_0831__5prime gsiC__5prime 0 866225 866422 1 259 0.06060606060606061 198 12 "glutathione transporter and permease component and ABC superfamily" +BW25113_0831__3prime gsiC__3prime 0 867344 867541 1 446 0.09090909090909091 198 18 "glutathione transporter and permease component and ABC superfamily" +BW25113_0832 gsiD 0 867346 868257 1 3190 0.14802631578947367 912 135 "glutathione transporter and permease component and ABC superfamily" +BW25113_0832__5prime gsiD__5prime 0 867148 867345 1 233 0.08585858585858586 198 17 "glutathione transporter and permease component and ABC superfamily" +BW25113_0832__3prime gsiD__3prime 0 868258 868455 1 219 0.05555555555555555 198 11 "glutathione transporter and permease component and ABC superfamily" +BW25113_0833 yliE 0 868435 870783 1 21536 0.2515964240102171 2349 591 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_0833__5prime yliE__5prime 0 868237 868434 1 241 0.06060606060606061 198 12 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_0833__3prime yliE__3prime 0 870784 870981 1 3119 0.36363636363636365 198 72 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_0834 yliF 0 870791 872119 1 14031 0.29571106094808125 1329 393 "putative membrane-anchored diguanylate cyclase" +BW25113_0834__5prime yliF__5prime 0 870593 870790 1 3107 0.3838383838383838 198 76 "putative membrane-anchored diguanylate cyclase" +BW25113_0834__3prime yliF__3prime 0 872120 872317 1 900 0.18686868686868688 198 37 "putative membrane-anchored diguanylate cyclase" +BW25113_0835 rimO 0 872166 873491 -1 3243 0.1048265460030166 1326 139 "ribosomal protein S12 methylthiotransferase; radical SAM superfamily" +BW25113_0835__5prime rimO__5prime 0 873492 873689 -1 274 0.08585858585858586 198 17 "ribosomal protein S12 methylthiotransferase; radical SAM superfamily" +BW25113_0835__3prime rimO__3prime 0 871968 872165 -1 1571 0.1919191919191919 198 38 "ribosomal protein S12 methylthiotransferase; radical SAM superfamily" +BW25113_0836 bssR 0 873704 874087 1 851 0.0859375 384 33 "repressor of biofilm formation by indole transport regulation" +BW25113_0836__5prime bssR__5prime 0 873506 873703 1 274 0.08585858585858586 198 17 "repressor of biofilm formation by indole transport regulation" +BW25113_0836__3prime bssR__3prime 0 874088 874285 1 175 0.05555555555555555 198 11 "repressor of biofilm formation by indole transport regulation" +BW25113_0837 yliI 0 874198 875313 1 1706 0.06630824372759857 1116 74 "soluble aldose sugar dehydrogenase" +BW25113_0837__5prime yliI__5prime 0 874000 874197 1 386 0.10606060606060606 198 21 "soluble aldose sugar dehydrogenase" +BW25113_0837__3prime yliI__3prime 0 875314 875511 1 1047 0.13636363636363635 198 27 "soluble aldose sugar dehydrogenase" +BW25113_0838 gstB 0 875310 875936 -1 1841 0.09728867623604466 627 61 "glutathione S-transferase" +BW25113_0838__5prime gstB__5prime 0 875937 876134 -1 261 0.025252525252525252 198 5 "glutathione S-transferase" +BW25113_0838__3prime gstB__3prime 0 875112 875309 -1 451 0.07575757575757576 198 15 "glutathione S-transferase" +BW25113_0839 dacC 0 876183 877385 1 2750 0.09891936824605153 1203 119 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)" +BW25113_0839__5prime dacC__5prime 0 875985 876182 1 0 0.0 198 0 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)" +BW25113_0839__3prime dacC__3prime 0 877386 877583 1 264 0.08080808080808081 198 16 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)" +877395_877422 877395_877422 0 877396 877422 1 0 0.0 27 0 "877395_877422" +877395_877422__5prime 877395_877422__5prime 0 877198 877395 1 264 0.06565656565656566 198 13 "877395_877422" +877395_877422__3prime 877395_877422__3prime 0 877423 877620 1 344 0.10606060606060606 198 21 "877395_877422" +BW25113_0840 deoR 0 877432 878190 -1 986 0.06851119894598155 759 52 "deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx" +BW25113_0840__5prime deoR__5prime 0 878191 878388 -1 616 0.13636363636363635 198 27 "deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx" +BW25113_0840__3prime deoR__3prime 0 877234 877431 -1 265 0.06565656565656566 198 13 "deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx" +BW25113_0841 ybjG 0 878248 878844 -1 1379 0.1323283082077052 597 79 "undecaprenyl pyrophosphate phosphatase" +BW25113_0841__5prime ybjG__5prime 0 878845 879042 -1 2218 0.30303030303030304 198 60 "undecaprenyl pyrophosphate phosphatase" +BW25113_0841__3prime ybjG__3prime 0 878050 878247 -1 506 0.09090909090909091 198 18 "undecaprenyl pyrophosphate phosphatase" +BW25113_0842 mdfA 0 879129 880361 1 2570 0.08921330089213302 1233 110 "multidrug efflux system protein" +BW25113_0842__5prime mdfA__5prime 0 878931 879128 1 1196 0.20202020202020202 198 40 "multidrug efflux system protein" +BW25113_0842__3prime mdfA__3prime 0 880362 880559 1 234 0.06060606060606061 198 12 "multidrug efflux system protein" +BW25113_0843 ybjH 0 880402 880686 -1 524 0.10175438596491228 285 29 "uncharacterized protein" +BW25113_0843__5prime ybjH__5prime 0 880687 880884 -1 57 0.025252525252525252 198 5 "uncharacterized protein" +BW25113_0843__3prime ybjH__3prime 0 880204 880401 -1 58 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_0844 ybjI 0 880772 881587 -1 3670 0.14950980392156862 816 122 "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" +BW25113_0844__5prime ybjI__5prime 0 881588 881785 -1 714 0.12626262626262627 198 25 "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" +BW25113_0844__3prime ybjI__3prime 0 880574 880771 -1 322 0.09090909090909091 198 18 "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" +BW25113_0845 ybjJ 0 881587 882795 -1 3056 0.130686517783292 1209 158 "putative transporter" +BW25113_0845__5prime ybjJ__5prime 0 882796 882993 -1 70 0.020202020202020204 198 4 "putative transporter" +BW25113_0845__3prime ybjJ__3prime 0 881389 881586 -1 795 0.13636363636363635 198 27 "putative transporter" +BW25113_0846 rcdA 0 882879 883415 1 597 0.0446927374301676 537 24 "transcriptional regulator of csgD and ybiJI; autoregulator" +BW25113_0846__5prime rcdA__5prime 0 882681 882878 1 170 0.050505050505050504 198 10 "transcriptional regulator of csgD and ybiJI; autoregulator" +BW25113_0846__3prime rcdA__3prime 0 883416 883613 1 391 0.09090909090909091 198 18 "transcriptional regulator of csgD and ybiJI; autoregulator" +BW25113_4417 rybB 0 883432 883510 -1 66 0.0759493670886076 79 6 "sRNA antisense regulator of ompC and ompW mRNA instability and Hfq-dependent" +BW25113_4417__5prime rybB__5prime 0 883511 883708 -1 644 0.14646464646464646 198 29 "sRNA antisense regulator of ompC and ompW mRNA instability and Hfq-dependent" +BW25113_4417__3prime rybB__3prime 0 883234 883431 -1 240 0.04040404040404041 198 8 "sRNA antisense regulator of ompC and ompW mRNA instability and Hfq-dependent" +BW25113_0847 ybjL 0 883590 885275 -1 4390 0.12158956109134045 1686 205 "putative transporter" +BW25113_0847__5prime ybjL__5prime 0 885276 885473 -1 375 0.10606060606060606 198 21 "putative transporter" +BW25113_0847__3prime ybjL__3prime 0 883392 883589 -1 411 0.07575757575757576 198 15 "putative transporter" +BW25113_0848 ybjM 0 885545 885922 1 1159 0.1111111111111111 378 42 "inner membrane protein" +BW25113_0848__5prime ybjM__5prime 0 885347 885544 1 874 0.20707070707070707 198 41 "inner membrane protein" +BW25113_0848__3prime ybjM__3prime 0 885923 886120 1 327 0.10101010101010101 198 20 "inner membrane protein" +BW25113_0849 grxA 0 885952 886209 -1 819 0.12403100775193798 258 32 "glutaredoxin 1 and redox coenzyme for ribonucleotide reductase (RNR1a)" +BW25113_0849__5prime grxA__5prime 0 886210 886407 -1 398 0.09090909090909091 198 18 "glutaredoxin 1 and redox coenzyme for ribonucleotide reductase (RNR1a)" +BW25113_0849__3prime grxA__3prime 0 885754 885951 -1 430 0.09595959595959595 198 19 "glutaredoxin 1 and redox coenzyme for ribonucleotide reductase (RNR1a)" +BW25113_0850 ybjC 0 886369 886656 1 1004 0.1076388888888889 288 31 "DUF1418 family protein" +BW25113_0850__5prime ybjC__5prime 0 886171 886368 1 769 0.11616161616161616 198 23 "DUF1418 family protein" +BW25113_0850__3prime ybjC__3prime 0 886657 886854 1 595 0.17676767676767677 198 35 "DUF1418 family protein" +BW25113_0851 nfsA 0 886640 887362 1 1949 0.1396957123098202 723 101 "nitroreductase A and NADPH-dependent and FMN-dependent" +BW25113_0851__5prime nfsA__5prime 0 886442 886639 1 964 0.13636363636363635 198 27 "nitroreductase A and NADPH-dependent and FMN-dependent" +BW25113_0851__3prime nfsA__3prime 0 887363 887560 1 899 0.13131313131313133 198 26 "nitroreductase A and NADPH-dependent and FMN-dependent" +BW25113_0852 rimK 0 887423 888325 1 2072 0.10299003322259136 903 93 "ribosomal protein S6 modification protein" +BW25113_0852__5prime rimK__5prime 0 887225 887422 1 692 0.09595959595959595 198 19 "ribosomal protein S6 modification protein" +BW25113_0852__3prime rimK__3prime 0 888326 888523 1 103 0.025252525252525252 198 5 "ribosomal protein S6 modification protein" +BW25113_0853 ybjN 0 888413 888889 1 416 0.06289308176100629 477 30 "negative regulator of motility; multicopy suppressor of coaA(Ts)" +BW25113_0853__5prime ybjN__5prime 0 888215 888412 1 239 0.08080808080808081 198 16 "negative regulator of motility; multicopy suppressor of coaA(Ts)" +BW25113_0853__3prime ybjN__3prime 0 888890 889087 1 25 0.010101010101010102 198 2 "negative regulator of motility; multicopy suppressor of coaA(Ts)" +BW25113_0854 potF 0 889240 890352 1 1541 0.07457322551662174 1113 83 "putrescine transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_0854__5prime potF__5prime 0 889042 889239 1 89 0.030303030303030304 198 6 "putrescine transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_0854__3prime potF__3prime 0 890353 890550 1 386 0.13636363636363635 198 27 "putrescine transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_0855 potG 0 890447 891580 1 2342 0.10670194003527336 1134 121 "putrescine transporter subunit: ATP-binding component of ABC superfamily" +BW25113_0855__5prime potG__5prime 0 890249 890446 1 578 0.16161616161616163 198 32 "putrescine transporter subunit: ATP-binding component of ABC superfamily" +BW25113_0855__3prime potG__3prime 0 891581 891778 1 159 0.07575757575757576 198 15 "putrescine transporter subunit: ATP-binding component of ABC superfamily" +BW25113_0856 potH 0 891590 892543 1 1814 0.0639412997903564 954 61 "putrescine transporter subunit: membrane component of ABC superfamily" +BW25113_0856__5prime potH__5prime 0 891392 891589 1 554 0.1111111111111111 198 22 "putrescine transporter subunit: membrane component of ABC superfamily" +BW25113_0856__3prime potH__3prime 0 892544 892741 1 241 0.07575757575757576 198 15 "putrescine transporter subunit: membrane component of ABC superfamily" +BW25113_0857 potI 0 892540 893385 1 873 0.0591016548463357 846 50 "putrescine transporter subunit: membrane component of ABC superfamily" +BW25113_0857__5prime potI__5prime 0 892342 892539 1 504 0.030303030303030304 198 6 "putrescine transporter subunit: membrane component of ABC superfamily" +BW25113_0857__3prime potI__3prime 0 893386 893583 1 256 0.045454545454545456 198 9 "putrescine transporter subunit: membrane component of ABC superfamily" +BW25113_0858 ybjO 0 893445 893933 1 1264 0.11860940695296524 489 58 "DUF2593 family inner membrane protein" +BW25113_0858__5prime ybjO__5prime 0 893247 893444 1 292 0.06060606060606061 198 12 "DUF2593 family inner membrane protein" +BW25113_0858__3prime ybjO__3prime 0 893934 894131 1 663 0.10606060606060606 198 21 "DUF2593 family inner membrane protein" +BW25113_0859 rlmC 0 893974 895101 1 3434 0.11613475177304965 1128 131 "23S rRNA m(5)U747 methyltransferase and SAM-dependent" +BW25113_0859__5prime rlmC__5prime 0 893776 893973 1 627 0.16161616161616163 198 32 "23S rRNA m(5)U747 methyltransferase and SAM-dependent" +BW25113_0859__3prime rlmC__3prime 0 895102 895299 1 372 0.09595959595959595 198 19 "23S rRNA m(5)U747 methyltransferase and SAM-dependent" +895151_895249 895151_895249 0 895152 895249 1 285 0.11224489795918367 98 11 "895151_895249" +895151_895249__5prime 895151_895249__5prime 0 894954 895151 1 316 0.09090909090909091 198 18 "895151_895249" +895151_895249__3prime 895151_895249__3prime 0 895250 895447 1 407 0.1111111111111111 198 22 "895151_895249" +BW25113_0860 artJ 0 895300 896031 -1 692 0.04918032786885246 732 36 "arginine binding protein and periplasmic" +BW25113_0860__5prime artJ__5prime 0 896032 896229 -1 84 0.04040404040404041 198 8 "arginine binding protein and periplasmic" +BW25113_0860__3prime artJ__3prime 0 895102 895299 -1 372 0.09595959595959595 198 19 "arginine binding protein and periplasmic" +896204_896291 896204_896291 0 896205 896291 1 227 0.13793103448275862 87 12 "896204_896291" +896204_896291__5prime 896204_896291__5prime 0 896007 896204 1 39 0.015151515151515152 198 3 "896204_896291" +896204_896291__3prime 896204_896291__3prime 0 896292 896489 1 551 0.12626262626262627 198 25 "896204_896291" +BW25113_0861 artM 0 896322 896990 -1 2348 0.13602391629297458 669 91 "arginine transporter subunit" +BW25113_0861__5prime artM__5prime 0 896991 897188 -1 517 0.10101010101010101 198 20 "arginine transporter subunit" +BW25113_0861__3prime artM__3prime 0 896124 896321 -1 271 0.07575757575757576 198 15 "arginine transporter subunit" +BW25113_0862 artQ 0 896990 897706 -1 1830 0.09065550906555091 717 65 "arginine transporter subunit" +BW25113_0862__5prime artQ__5prime 0 897707 897904 -1 760 0.12121212121212122 198 24 "arginine transporter subunit" +BW25113_0862__3prime artQ__3prime 0 896792 896989 -1 610 0.10101010101010101 198 20 "arginine transporter subunit" +BW25113_0863 artI 0 897713 898444 -1 1582 0.10245901639344263 732 75 "arginine transporter subunit" +BW25113_0863__5prime artI__5prime 0 898445 898642 -1 211 0.06565656565656566 198 13 "arginine transporter subunit" +BW25113_0863__3prime artI__3prime 0 897515 897712 -1 599 0.09595959595959595 198 19 "arginine transporter subunit" +BW25113_0864 artP 0 898462 899190 -1 1836 0.10699588477366255 729 78 "arginine transporter subunit" +BW25113_0864__5prime artP__5prime 0 899191 899388 -1 290 0.07575757575757576 198 15 "arginine transporter subunit" +BW25113_0864__3prime artP__3prime 0 898264 898461 -1 184 0.030303030303030304 198 6 "arginine transporter subunit" +BW25113_0865 ybjP 0 899408 899923 -1 2663 0.20348837209302326 516 105 "lipoprotein" +BW25113_0865__5prime ybjP__5prime 0 899924 900121 -1 215 0.06060606060606061 198 12 "lipoprotein" +BW25113_0865__3prime ybjP__3prime 0 899210 899407 -1 216 0.0707070707070707 198 14 "lipoprotein" +BW25113_0866 ybjQ 0 900049 900372 1 543 0.08641975308641975 324 28 "UPF0145 family protein" +BW25113_0866__5prime ybjQ__5prime 0 899851 900048 1 616 0.13636363636363635 198 27 "UPF0145 family protein" +BW25113_0866__3prime ybjQ__3prime 0 900373 900570 1 457 0.1414141414141414 198 28 "UPF0145 family protein" +BW25113_0867 amiD 0 900369 901199 1 1574 0.11311672683513839 831 94 "1 and 6-anhydro-N-acetylmuramyl-L-alanine amidase and Zn-dependent; OM lipoprotein" +BW25113_0867__5prime amiD__5prime 0 900171 900368 1 318 0.08080808080808081 198 16 "1 and 6-anhydro-N-acetylmuramyl-L-alanine amidase and Zn-dependent; OM lipoprotein" +BW25113_0867__3prime amiD__3prime 0 901200 901397 1 182 0.05555555555555555 198 11 "1 and 6-anhydro-N-acetylmuramyl-L-alanine amidase and Zn-dependent; OM lipoprotein" +BW25113_0868 ybjS 0 901196 902209 -1 2085 0.09566074950690336 1014 97 "putative NAD(P)H-dependent oxidoreductase with NAD(P)-binding Rossmann-fold domain" +BW25113_0868__5prime ybjS__5prime 0 902210 902407 -1 238 0.0707070707070707 198 14 "putative NAD(P)H-dependent oxidoreductase with NAD(P)-binding Rossmann-fold domain" +BW25113_0868__3prime ybjS__3prime 0 900998 901195 -1 476 0.13636363636363635 198 27 "putative NAD(P)H-dependent oxidoreductase with NAD(P)-binding Rossmann-fold domain" +BW25113_0869 ybjT 0 902308 903738 -1 2706 0.09503843466107617 1431 136 "putative NAD-dependent oxidoreductase" +BW25113_0869__5prime ybjT__5prime 0 903739 903936 -1 390 0.10101010101010101 198 20 "putative NAD-dependent oxidoreductase" +BW25113_0869__3prime ybjT__3prime 0 902110 902307 -1 153 0.06060606060606061 198 12 "putative NAD-dependent oxidoreductase" +BW25113_0870 ltaE 0 903749 904750 -1 1943 0.07984031936127745 1002 80 "L-allo-threonine aldolase and PLP-dependent" +BW25113_0870__5prime ltaE__5prime 0 904751 904948 -1 430 0.10101010101010101 198 20 "L-allo-threonine aldolase and PLP-dependent" +BW25113_0870__3prime ltaE__3prime 0 903551 903748 -1 364 0.1111111111111111 198 22 "L-allo-threonine aldolase and PLP-dependent" +BW25113_0871 poxB 0 904787 906505 -1 3562 0.09016870273414776 1719 155 "pyruvate dehydrogenase (pyruvate oxidase) and thiamine triphosphate-binding and FAD-binding" +BW25113_0871__5prime poxB__5prime 0 906506 906703 -1 451 0.10606060606060606 198 21 "pyruvate dehydrogenase (pyruvate oxidase) and thiamine triphosphate-binding and FAD-binding" +BW25113_0871__3prime poxB__3prime 0 904589 904786 -1 653 0.11616161616161616 198 23 "pyruvate dehydrogenase (pyruvate oxidase) and thiamine triphosphate-binding and FAD-binding" +906602_906628 906602_906628 0 906603 906628 1 0 0.0 26 0 "906602_906628" +906602_906628__5prime 906602_906628__5prime 0 906405 906602 1 400 0.12626262626262627 198 25 "906602_906628" +906602_906628__3prime 906602_906628__3prime 0 906629 906826 1 625 0.10101010101010101 198 20 "906602_906628" +BW25113_0872 hcr 0 906638 907606 -1 1881 0.0784313725490196 969 76 "HCP oxidoreductase and NADH-dependent" +BW25113_0872__5prime hcr__5prime 0 907607 907804 -1 180 0.06060606060606061 198 12 "HCP oxidoreductase and NADH-dependent" +BW25113_0872__3prime hcr__3prime 0 906440 906637 -1 196 0.0707070707070707 198 14 "HCP oxidoreductase and NADH-dependent" +BW25113_0873 hcp 0 907618 909270 -1 2693 0.07259528130671507 1653 120 "hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases" +BW25113_0873__5prime hcp__5prime 0 909271 909468 -1 444 0.08080808080808081 198 16 "hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases" +BW25113_0873__3prime hcp__3prime 0 907420 907617 -1 221 0.03535353535353535 198 7 "hybrid-cluster [4Fe-2S-2O] protein in anaerobic terminal reductases" +907939_908196 907939_908196 0 907940 908196 1 388 0.09727626459143969 257 25 "907939_908196" +907939_908196__5prime 907939_908196__5prime 0 907742 907939 1 427 0.09090909090909091 198 18 "907939_908196" +907939_908196__3prime 907939_908196__3prime 0 908197 908394 1 59 0.020202020202020204 198 4 "907939_908196" +BW25113_0874 ybjE 0 909414 910313 -1 5297 0.21777777777777776 900 196 "putative transporter" +BW25113_0874__5prime ybjE__5prime 0 910314 910511 -1 348 0.08585858585858586 198 17 "putative transporter" +BW25113_0874__3prime ybjE__3prime 0 909216 909413 -1 465 0.045454545454545456 198 9 "putative transporter" +BW25113_0875 aqpZ 0 910808 911503 -1 2201 0.11350574712643678 696 79 "aquaporin Z" +BW25113_0875__5prime aqpZ__5prime 0 911504 911701 -1 531 0.09595959595959595 198 19 "aquaporin Z" +BW25113_0875__3prime aqpZ__3prime 0 910610 910807 -1 371 0.1111111111111111 198 22 "aquaporin Z" +BW25113_0876 ybjD 0 911929 913587 1 4246 0.11030741410488246 1659 183 "putative OLD family ATP-dependent endonuclease; DUF2813 family protein" +BW25113_0876__5prime ybjD__5prime 0 911731 911928 1 648 0.12121212121212122 198 24 "putative OLD family ATP-dependent endonuclease; DUF2813 family protein" +BW25113_0876__3prime ybjD__3prime 0 913588 913785 1 587 0.07575757575757576 198 15 "putative OLD family ATP-dependent endonuclease; DUF2813 family protein" +BW25113_0877 ybjX 0 913584 914576 -1 3329 0.11983887210473314 993 119 "DUF535 family protein" +BW25113_0877__5prime ybjX__5prime 0 914577 914774 -1 493 0.07575757575757576 198 15 "DUF535 family protein" +BW25113_0877__3prime ybjX__3prime 0 913386 913583 -1 424 0.09595959595959595 198 19 "DUF535 family protein" +BW25113_0878 macA 0 914691 915806 1 2408 0.08512544802867383 1116 95 "macrolide transporter subunit and membrane fusion protein (MFP) component" +BW25113_0878__5prime macA__5prime 0 914493 914690 1 434 0.0707070707070707 198 14 "macrolide transporter subunit and membrane fusion protein (MFP) component" +BW25113_0878__3prime macA__3prime 0 915807 916004 1 688 0.12121212121212122 198 24 "macrolide transporter subunit and membrane fusion protein (MFP) component" +BW25113_0879 macB 0 915803 917749 1 4209 0.08269131997945557 1947 161 "fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component" +BW25113_0879__5prime macB__5prime 0 915605 915802 1 202 0.030303030303030304 198 6 "fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component" +BW25113_0879__3prime macB__3prime 0 917750 917947 1 1284 0.16161616161616163 198 32 "fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component" +BW25113_0880 cspD 0 917822 918046 -1 1332 0.16 225 36 "inhibitor of DNA replication and cold shock protein homolog" +BW25113_0880__5prime cspD__5prime 0 918047 918244 -1 241 0.04040404040404041 198 8 "inhibitor of DNA replication and cold shock protein homolog" +BW25113_0880__3prime cspD__3prime 0 917624 917821 -1 169 0.045454545454545456 198 9 "inhibitor of DNA replication and cold shock protein homolog" +917886_918048 917886_918048 0 917887 918048 1 490 0.16049382716049382 162 26 "917886_918048" +917886_918048__5prime 917886_918048__5prime 0 917689 917886 1 1011 0.09595959595959595 198 19 "917886_918048" +917886_918048__3prime 917886_918048__3prime 0 918049 918246 1 241 0.04040404040404041 198 8 "917886_918048" +BW25113_0881 clpS 0 918369 918689 1 629 0.13707165109034267 321 44 "regulatory protein for ClpA substrate specificity" +BW25113_0881__5prime clpS__5prime 0 918171 918368 1 268 0.06060606060606061 198 12 "regulatory protein for ClpA substrate specificity" +BW25113_0881__3prime clpS__3prime 0 918690 918887 1 286 0.07575757575757576 198 15 "regulatory protein for ClpA substrate specificity" +BW25113_0882 clpA 0 918720 920996 1 5081 0.1111111111111111 2277 253 "ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease and chaperone activity" +BW25113_0882__5prime clpA__5prime 0 918522 918719 1 344 0.13131313131313133 198 26 "ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease and chaperone activity" +BW25113_0882__3prime clpA__3prime 0 920997 921194 1 95 0.04040404040404041 198 8 "ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease and chaperone activity" +BW25113_0883 serW 0 921340 921427 -1 163 0.1590909090909091 88 14 "tRNA-Ser" +BW25113_0883__5prime serW__5prime 0 921428 921625 -1 74 0.030303030303030304 198 6 "tRNA-Ser" +BW25113_0883__3prime serW__3prime 0 921142 921339 -1 313 0.10101010101010101 198 20 "tRNA-Ser" +BW25113_0884 infA 0 921681 921899 -1 0 0.0 219 0 "translation initiation factor IF-1" +BW25113_0884__5prime infA__5prime 0 921900 922097 -1 287 0.07575757575757576 198 15 "translation initiation factor IF-1" +BW25113_0884__3prime infA__3prime 0 921483 921680 -1 50 0.030303030303030304 198 6 "translation initiation factor IF-1" +BW25113_0885 aat 0 922184 922888 -1 1418 0.09787234042553192 705 69 "leucyl/phenylalanyl-tRNA-protein transferase" +BW25113_0885__5prime aat__5prime 0 922889 923086 -1 180 0.07575757575757576 198 15 "leucyl/phenylalanyl-tRNA-protein transferase" +BW25113_0885__3prime aat__3prime 0 921986 922183 -1 276 0.0707070707070707 198 14 "leucyl/phenylalanyl-tRNA-protein transferase" +BW25113_0886 cydC 0 922930 924651 -1 1097 0.05168408826945412 1722 89 "fused glutathione and cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0886__5prime cydC__5prime 0 924652 924849 -1 280 0.08585858585858586 198 17 "fused glutathione and cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0886__3prime cydC__3prime 0 922732 922929 -1 323 0.0707070707070707 198 14 "fused glutathione and cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0887 cydD 0 924652 926418 -1 1045 0.04697226938313526 1767 83 "fused glutathione and cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0887__5prime cydD__5prime 0 926419 926616 -1 478 0.09595959595959595 198 19 "fused glutathione and cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0887__3prime cydD__3prime 0 924454 924651 -1 388 0.12626262626262627 198 25 "fused glutathione and cysteine exporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0888 trxB 0 926541 927506 -1 945 0.047619047619047616 966 46 "thioredoxin reductase and FAD/NAD(P)-binding" +BW25113_0888__5prime trxB__5prime 0 927507 927704 -1 190 0.06565656565656566 198 13 "thioredoxin reductase and FAD/NAD(P)-binding" +BW25113_0888__3prime trxB__3prime 0 926343 926540 -1 292 0.06060606060606061 198 12 "thioredoxin reductase and FAD/NAD(P)-binding" +BW25113_0889 lrp 0 928051 928545 1 1371 0.1414141414141414 495 70 "leucine-responsive global transcriptional regulator" +BW25113_0889__5prime lrp__5prime 0 927853 928050 1 752 0.16666666666666666 198 33 "leucine-responsive global transcriptional regulator" +BW25113_0889__3prime lrp__3prime 0 928546 928743 1 271 0.10606060606060606 198 21 "leucine-responsive global transcriptional regulator" +BW25113_0890 ftsK 0 928680 932669 1 3767 0.05137844611528822 3990 205 "DNA translocase at septal ring sorting daughter chromsomes" +BW25113_0890__5prime ftsK__5prime 0 928482 928679 1 303 0.12121212121212122 198 24 "DNA translocase at septal ring sorting daughter chromsomes" +BW25113_0890__3prime ftsK__3prime 0 932670 932867 1 243 0.045454545454545456 198 9 "DNA translocase at septal ring sorting daughter chromsomes" +932679_932715 932679_932715 0 932680 932715 1 29 0.027777777777777776 36 1 "932679_932715" +932679_932715__5prime 932679_932715__5prime 0 932482 932679 1 387 0.09090909090909091 198 18 "932679_932715" +932679_932715__3prime 932679_932715__3prime 0 932716 932913 1 214 0.04040404040404041 198 8 "932679_932715" +BW25113_0891 lolA 0 932828 933439 1 15 0.0032679738562091504 612 2 "lipoprotein chaperone" +BW25113_0891__5prime lolA__5prime 0 932630 932827 1 402 0.09090909090909091 198 18 "lipoprotein chaperone" +BW25113_0891__3prime lolA__3prime 0 933440 933637 1 377 0.10606060606060606 198 21 "lipoprotein chaperone" +BW25113_0892 rarA 0 933450 934793 1 2692 0.0900297619047619 1344 121 "DNA-dependent ATPase involved in processing recombination intermediates at replication forks" +BW25113_0892__5prime rarA__5prime 0 933252 933449 1 15 0.010101010101010102 198 2 "DNA-dependent ATPase involved in processing recombination intermediates at replication forks" +BW25113_0892__3prime rarA__3prime 0 934794 934991 1 6 0.005050505050505051 198 1 "DNA-dependent ATPase involved in processing recombination intermediates at replication forks" +BW25113_0893 serS 0 934884 936176 1 6 0.0007733952049497294 1293 1 "seryl-tRNA synthetase and also charges selenocysteinyl-tRNA with serine" +BW25113_0893__5prime serS__5prime 0 934686 934883 1 99 0.04040404040404041 198 8 "seryl-tRNA synthetase and also charges selenocysteinyl-tRNA with serine" +BW25113_0893__3prime serS__3prime 0 936177 936374 1 77 0.030303030303030304 198 6 "seryl-tRNA synthetase and also charges selenocysteinyl-tRNA with serine" +BW25113_0894 dmsA 0 936415 938859 1 3057 0.06339468302658487 2445 155 "dimethyl sulfoxide reductase and anaerobic and subunit A" +BW25113_0894__5prime dmsA__5prime 0 936217 936414 1 266 0.05555555555555555 198 11 "dimethyl sulfoxide reductase and anaerobic and subunit A" +BW25113_0894__3prime dmsA__3prime 0 938860 939057 1 239 0.0707070707070707 198 14 "dimethyl sulfoxide reductase and anaerobic and subunit A" +BW25113_0895 dmsB 0 938870 939487 1 858 0.06796116504854369 618 42 "dimethyl sulfoxide reductase and anaerobic and subunit B" +BW25113_0895__5prime dmsB__5prime 0 938672 938869 1 618 0.10101010101010101 198 20 "dimethyl sulfoxide reductase and anaerobic and subunit B" +BW25113_0895__3prime dmsB__3prime 0 939488 939685 1 165 0.06060606060606061 198 12 "dimethyl sulfoxide reductase and anaerobic and subunit B" +BW25113_0896 dmsC 0 939489 940352 1 1341 0.06365740740740741 864 55 "dimethyl sulfoxide reductase and anaerobic and subunit C" +BW25113_0896__5prime dmsC__5prime 0 939291 939488 1 134 0.05555555555555555 198 11 "dimethyl sulfoxide reductase and anaerobic and subunit C" +BW25113_0896__3prime dmsC__3prime 0 940353 940550 1 463 0.15656565656565657 198 31 "dimethyl sulfoxide reductase and anaerobic and subunit C" +BW25113_0897 ycaC 0 940387 941013 -1 1436 0.13556618819776714 627 85 "putative isochorismatase family hydrolase" +BW25113_0897__5prime ycaC__5prime 0 941014 941211 -1 175 0.050505050505050504 198 10 "putative isochorismatase family hydrolase" +BW25113_0897__3prime ycaC__3prime 0 940189 940386 -1 431 0.07575757575757576 198 15 "putative isochorismatase family hydrolase" +BW25113_0898 ycaD 0 941327 942475 1 4150 0.14186248912097477 1149 163 "putative MFS-type transporter" +BW25113_0898__5prime ycaD__5prime 0 941129 941326 1 52 0.04040404040404041 198 8 "putative MFS-type transporter" +BW25113_0898__3prime ycaD__3prime 0 942476 942673 1 519 0.12626262626262627 198 25 "putative MFS-type transporter" +BW25113_0899 ycaM 0 942685 944115 1 13743 0.29350104821802936 1431 420 "putative transporter" +BW25113_0899__5prime ycaM__5prime 0 942487 942684 1 580 0.12626262626262627 198 25 "putative transporter" +BW25113_0899__3prime ycaM__3prime 0 944116 944313 1 3425 0.35858585858585856 198 71 "putative transporter" +BW25113_0900 ycaN 0 944116 945024 -1 9954 0.28272827282728275 909 257 "LysR family putative transcriptional regulator" +BW25113_0900__5prime ycaN__5prime 0 945025 945222 -1 3206 0.35858585858585856 198 71 "LysR family putative transcriptional regulator" +BW25113_0900__3prime ycaN__3prime 0 943918 944115 -1 2054 0.2828282828282828 198 56 "LysR family putative transcriptional regulator" +BW25113_0901 ycaK 0 945124 945714 1 6785 0.27918781725888325 591 165 "putative NAD(P)H-dependent oxidoreductase" +BW25113_0901__5prime ycaK__5prime 0 944926 945123 1 5160 0.46464646464646464 198 92 "putative NAD(P)H-dependent oxidoreductase" +BW25113_0901__3prime ycaK__3prime 0 945715 945912 1 2001 0.16161616161616163 198 32 "putative NAD(P)H-dependent oxidoreductase" +BW25113_0902 pflA 0 945796 946536 -1 3011 0.11605937921727395 741 86 "[formate-C-acetyltransferase 1]-activating enzyme; pyruvate formate-lyase 1-activating enzyme" +BW25113_0902__5prime pflA__5prime 0 946537 946734 -1 290 0.09090909090909091 198 18 "[formate-C-acetyltransferase 1]-activating enzyme; pyruvate formate-lyase 1-activating enzyme" +BW25113_0902__3prime pflA__3prime 0 945598 945795 -1 1648 0.25757575757575757 198 51 "[formate-C-acetyltransferase 1]-activating enzyme; pyruvate formate-lyase 1-activating enzyme" +BW25113_0903 pflB 0 946728 949010 -1 5370 0.0994305738063951 2283 227 "formate C-acetyltransferase 1 and anaerobic; pyruvate formate-lyase 1" +BW25113_0903__5prime pflB__5prime 0 949011 949208 -1 185 0.06565656565656566 198 13 "formate C-acetyltransferase 1 and anaerobic; pyruvate formate-lyase 1" +BW25113_0903__3prime pflB__3prime 0 946530 946727 -1 242 0.07575757575757576 198 15 "formate C-acetyltransferase 1 and anaerobic; pyruvate formate-lyase 1" +BW25113_0904 focA 0 949065 949922 -1 2802 0.13053613053613053 858 112 "formate channel" +BW25113_0904__5prime focA__5prime 0 949923 950120 -1 399 0.10606060606060606 198 21 "formate channel" +BW25113_0904__3prime focA__3prime 0 948867 949064 -1 186 0.08585858585858586 198 17 "formate channel" +BW25113_0905 ycaO 0 950328 952088 -1 4982 0.12265758091993186 1761 216 "ribosomal protein S12 methylthiotransferase accessory factor" +BW25113_0905__5prime ycaO__5prime 0 952089 952286 -1 304 0.08585858585858586 198 17 "ribosomal protein S12 methylthiotransferase accessory factor" +BW25113_0905__3prime ycaO__3prime 0 950130 950327 -1 390 0.07575757575757576 198 15 "ribosomal protein S12 methylthiotransferase accessory factor" +BW25113_0906 ycaP 0 952218 952910 1 1960 0.1038961038961039 693 72 "UPF0702 family putative inner membrane protein" +BW25113_0906__5prime ycaP__5prime 0 952020 952217 1 293 0.09090909090909091 198 18 "UPF0702 family putative inner membrane protein" +BW25113_0906__3prime ycaP__3prime 0 952911 953108 1 448 0.08585858585858586 198 17 "UPF0702 family putative inner membrane protein" +BW25113_0907 serC 0 953109 954197 1 2117 0.08631772268135904 1089 94 "3-phosphoserine/phosphohydroxythreonine aminotransferase" +BW25113_0907__5prime serC__5prime 0 952911 953108 1 448 0.08585858585858586 198 17 "3-phosphoserine/phosphohydroxythreonine aminotransferase" +BW25113_0907__3prime serC__3prime 0 954198 954395 1 466 0.12121212121212122 198 24 "3-phosphoserine/phosphohydroxythreonine aminotransferase" +BW25113_0908 aroA 0 954268 955551 1 2856 0.09890965732087227 1284 127 "5-enolpyruvylshikimate-3-phosphate synthetase" +BW25113_0908__5prime aroA__5prime 0 954070 954267 1 131 0.030303030303030304 198 6 "5-enolpyruvylshikimate-3-phosphate synthetase" +BW25113_0908__3prime aroA__3prime 0 955552 955749 1 262 0.015151515151515152 198 3 "5-enolpyruvylshikimate-3-phosphate synthetase" +BW25113_0909 ycaL 0 955720 956484 1 1640 0.11895424836601307 765 91 "putative peptidase-related chaperone" +BW25113_0909__5prime ycaL__5prime 0 955522 955719 1 267 0.020202020202020204 198 4 "putative peptidase-related chaperone" +BW25113_0909__3prime ycaL__3prime 0 956485 956682 1 442 0.05555555555555555 198 11 "putative peptidase-related chaperone" +BW25113_0910 cmk 0 956657 957340 1 118 0.01608187134502924 684 11 "cytidylate kinase" +BW25113_0910__5prime cmk__5prime 0 956459 956656 1 442 0.05555555555555555 198 11 "cytidylate kinase" +BW25113_0910__3prime cmk__3prime 0 957341 957538 1 0 0.0 198 0 "cytidylate kinase" +BW25113_0911 rpsA 0 957451 959124 1 30 0.002986857825567503 1674 5 "30S ribosomal subunit protein S1" +BW25113_0911__5prime rpsA__5prime 0 957253 957450 1 23 0.020202020202020204 198 4 "30S ribosomal subunit protein S1" +BW25113_0911__3prime rpsA__3prime 0 959125 959322 1 192 0.045454545454545456 198 9 "30S ribosomal subunit protein S1" +BW25113_0912 ihfB 0 959284 959568 1 451 0.056140350877192984 285 16 "integration host factor (IHF) and DNA-binding protein and beta subunit" +BW25113_0912__5prime ihfB__5prime 0 959086 959283 1 188 0.045454545454545456 198 9 "integration host factor (IHF) and DNA-binding protein and beta subunit" +BW25113_0912__3prime ihfB__3prime 0 959569 959766 1 135 0.020202020202020204 198 4 "integration host factor (IHF) and DNA-binding protein and beta subunit" +BW25113_0913 ycaI 0 959776 962040 1 5713 0.11655629139072848 2265 264 "ComEC family inner membrane protein" +BW25113_0913__5prime ycaI__5prime 0 959578 959775 1 135 0.020202020202020204 198 4 "ComEC family inner membrane protein" +BW25113_0913__3prime ycaI__3prime 0 962041 962238 1 0 0.0 198 0 "ComEC family inner membrane protein" +BW25113_0914 msbA 0 962077 963825 1 0 0.0 1749 0 "fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0914__5prime msbA__5prime 0 961879 962076 1 149 0.0707070707070707 198 14 "fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0914__3prime msbA__3prime 0 963826 964023 1 0 0.0 198 0 "fused lipid transporter subunits of ABC superfamily: membrane component/ATP-binding component" +BW25113_0915 lpxK 0 963822 964808 1 40 0.00303951367781155 987 3 '"lipid A 4''kinase"' +BW25113_0915__5prime lpxK__5prime 0 963624 963821 1 0 0.0 198 0 '"lipid A 4''kinase"' +BW25113_0915__3prime lpxK__3prime 0 964809 965006 1 225 0.09090909090909091 198 18 '"lipid A 4''kinase"' +BW25113_0916 ycaQ 0 964845 966077 1 2008 0.07785888077858881 1233 96 "DUF1006 family protein with C-terminal wHTH domain" +BW25113_0916__5prime ycaQ__5prime 0 964647 964844 1 56 0.025252525252525252 198 5 "DUF1006 family protein with C-terminal wHTH domain" +BW25113_0916__3prime ycaQ__3prime 0 966078 966275 1 155 0.030303030303030304 198 6 "DUF1006 family protein with C-terminal wHTH domain" +BW25113_0917 ycaR 0 966129 966311 1 183 0.03825136612021858 183 7 "peroxide and acid resistance protein and UPF0434 family" +BW25113_0917__5prime ycaR__5prime 0 965931 966128 1 301 0.05555555555555555 198 11 "peroxide and acid resistance protein and UPF0434 family" +BW25113_0917__3prime ycaR__3prime 0 966312 966509 1 0 0.0 198 0 "peroxide and acid resistance protein and UPF0434 family" +BW25113_0918 kdsB 0 966308 967054 1 0 0.0 747 0 "3-deoxy-manno-octulosonate cytidylyltransferase" +BW25113_0918__5prime kdsB__5prime 0 966110 966307 1 236 0.050505050505050504 198 10 "3-deoxy-manno-octulosonate cytidylyltransferase" +BW25113_0918__3prime kdsB__3prime 0 967055 967252 1 754 0.10101010101010101 198 20 "3-deoxy-manno-octulosonate cytidylyltransferase" +BW25113_0919 ycbJ 0 967208 968101 1 3095 0.09172259507829977 894 82 "protein kinase-like domain protein" +BW25113_0919__5prime ycbJ__5prime 0 967010 967207 1 220 0.050505050505050504 198 10 "protein kinase-like domain protein" +BW25113_0919__3prime ycbJ__3prime 0 968102 968299 1 222 0.08585858585858586 198 17 "protein kinase-like domain protein" +BW25113_0920 ycbC 0 968078 968857 -1 759 0.06794871794871794 780 53 "DUF218 superfamily protein" +BW25113_0920__5prime ycbC__5prime 0 968858 969055 -1 114 0.025252525252525252 198 5 "DUF218 superfamily protein" +BW25113_0920__3prime ycbC__3prime 0 967880 968077 -1 116 0.020202020202020204 198 4 "DUF218 superfamily protein" +BW25113_0921 smtA 0 968993 969778 1 1953 0.0916030534351145 786 72 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0921__5prime smtA__5prime 0 968795 968992 1 164 0.030303030303030304 198 6 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0921__3prime smtA__3prime 0 969779 969976 1 60 0.020202020202020204 198 4 "putative S-adenosyl-L-methionine-dependent methyltransferase" +BW25113_0922 mukF 0 969775 971097 1 60 0.0030234315948601664 1323 4 "chromosome condensin MukBEF and kleisin-like subunit and binds calcium" +BW25113_0922__5prime mukF__5prime 0 969577 969774 1 182 0.05555555555555555 198 11 "chromosome condensin MukBEF and kleisin-like subunit and binds calcium" +BW25113_0922__3prime mukF__3prime 0 971098 971295 1 0 0.0 198 0 "chromosome condensin MukBEF and kleisin-like subunit and binds calcium" +BW25113_0922 mukF 0 970347 970508 1 0 0.0 162 0 "970346_970508" +BW25113_0922__5prime mukF__5prime 0 970149 970346 1 0 0.0 198 0 "970346_970508" +BW25113_0922__3prime mukF__3prime 0 970509 970706 1 0 0.0 198 0 "970346_970508" +BW25113_0923 mukE 0 971078 971782 1 53 0.0070921985815602835 705 5 "chromosome condensin MukBEF and MukE localization factor" +BW25113_0923__5prime mukE__5prime 0 970880 971077 1 0 0.0 198 0 "chromosome condensin MukBEF and MukE localization factor" +BW25113_0923__3prime mukE__3prime 0 971783 971980 1 0 0.0 198 0 "chromosome condensin MukBEF and MukE localization factor" +BW25113_0924 mukB 0 971782 976242 1 13 0.00022416498542927594 4461 1 "chromosome condensin MukBEF and ATPase and DNA-binding subunit" +BW25113_0924__5prime mukB__5prime 0 971584 971781 1 53 0.025252525252525252 198 5 "chromosome condensin MukBEF and ATPase and DNA-binding subunit" +BW25113_0924__3prime mukB__3prime 0 976243 976440 1 120 0.030303030303030304 198 6 "chromosome condensin MukBEF and ATPase and DNA-binding subunit" +BW25113_0925 ldtD 0 976503 978350 1 5753 0.12824675324675325 1848 237 "murein L and D-transpeptidase" +BW25113_0925__5prime ldtD__5prime 0 976305 976502 1 301 0.09090909090909091 198 18 "murein L and D-transpeptidase" +BW25113_0925__3prime ldtD__3prime 0 978351 978548 1 293 0.10606060606060606 198 21 "murein L and D-transpeptidase" +BW25113_0926 ycbK 0 978531 979079 1 1741 0.13296903460837886 549 73 "M15A protease-related family periplasmic protein" +BW25113_0926__5prime ycbK__5prime 0 978333 978530 1 293 0.10606060606060606 198 21 "M15A protease-related family periplasmic protein" +BW25113_0926__3prime ycbK__3prime 0 979080 979277 1 825 0.1414141414141414 198 28 "M15A protease-related family periplasmic protein" +BW25113_0927 ycbL 0 979106 979753 1 1716 0.11728395061728394 648 76 "putative metal-binding enzyme" +BW25113_0927__5prime ycbL__5prime 0 978908 979105 1 970 0.13131313131313133 198 26 "putative metal-binding enzyme" +BW25113_0927__3prime ycbL__3prime 0 979754 979951 1 154 0.050505050505050504 198 10 "putative metal-binding enzyme" +979816_979914 979816_979914 0 979817 979914 1 103 0.061224489795918366 98 6 "979816_979914" +979816_979914__5prime 979816_979914__5prime 0 979619 979816 1 184 0.08080808080808081 198 16 "979816_979914" +979816_979914__3prime 979816_979914__3prime 0 979915 980112 1 300 0.09090909090909091 198 18 "979816_979914" +BW25113_0928 aspC 0 979975 981165 -1 1600 0.0764063811922754 1191 91 "aspartate aminotransferase and PLP-dependent" +BW25113_0928__5prime aspC__5prime 0 981166 981363 -1 103 0.05555555555555555 198 11 "aspartate aminotransferase and PLP-dependent" +BW25113_0928__3prime aspC__3prime 0 979777 979974 -1 154 0.050505050505050504 198 10 "aspartate aminotransferase and PLP-dependent" +BW25113_0929 ompF 0 981350 982438 -1 3224 0.10651974288337925 1089 116 "outer membrane porin 1a (Ia;b;F)" +BW25113_0929__5prime ompF__5prime 0 982439 982636 -1 26 0.005050505050505051 198 1 "outer membrane porin 1a (Ia;b;F)" +BW25113_0929__3prime ompF__3prime 0 981152 981349 -1 88 0.050505050505050504 198 10 "outer membrane porin 1a (Ia;b;F)" +BW25113_0930 asnS 0 983041 984441 -1 0 0.0 1401 0 "asparaginyl tRNA synthetase" +BW25113_0930__5prime asnS__5prime 0 984442 984639 -1 157 0.06060606060606061 198 12 "asparaginyl tRNA synthetase" +BW25113_0930__3prime asnS__3prime 0 982843 983040 -1 77 0.04040404040404041 198 8 "asparaginyl tRNA synthetase" +BW25113_0931 pncB 0 984610 985812 -1 2678 0.09808811305070657 1203 118 "nicotinate phosphoribosyltransferase" +BW25113_0931__5prime pncB__5prime 0 985813 986010 -1 482 0.12626262626262627 198 25 "nicotinate phosphoribosyltransferase" +BW25113_0931__3prime pncB__3prime 0 984412 984609 -1 91 0.03535353535353535 198 7 "nicotinate phosphoribosyltransferase" +BW25113_0932 pepN 0 986078 988690 1 6098 0.10065059318790662 2613 263 "aminopeptidase N" +BW25113_0932__5prime pepN__5prime 0 985880 986077 1 440 0.08080808080808081 198 16 "aminopeptidase N" +BW25113_0932__3prime pepN__3prime 0 988691 988888 1 159 0.045454545454545456 198 9 "aminopeptidase N" +BW25113_0933 ssuB 0 988733 989500 -1 772 0.0625 768 48 "alkanesulfonate transporter subunit" +BW25113_0933__5prime ssuB__5prime 0 989501 989698 -1 270 0.05555555555555555 198 11 "alkanesulfonate transporter subunit" +BW25113_0933__3prime ssuB__3prime 0 988535 988732 -1 97 0.04040404040404041 198 8 "alkanesulfonate transporter subunit" +BW25113_0934 ssuC 0 989497 990288 -1 1188 0.06186868686868687 792 49 "putative alkanesulfonate transporter subunit" +BW25113_0934__5prime ssuC__5prime 0 990289 990486 -1 36 0.015151515151515152 198 3 "putative alkanesulfonate transporter subunit" +BW25113_0934__3prime ssuC__3prime 0 989299 989496 -1 161 0.05555555555555555 198 11 "putative alkanesulfonate transporter subunit" +BW25113_0935 ssuD 0 990299 991444 -1 1329 0.0636998254799302 1146 73 "alkanesulfonate monooxygenase and FMNH(2)-dependent" +BW25113_0935__5prime ssuD__5prime 0 991445 991642 -1 214 0.07575757575757576 198 15 "alkanesulfonate monooxygenase and FMNH(2)-dependent" +BW25113_0935__3prime ssuD__3prime 0 990101 990298 -1 422 0.06565656565656566 198 13 "alkanesulfonate monooxygenase and FMNH(2)-dependent" +BW25113_0936 ssuA 0 991441 992400 -1 1244 0.08125 960 78 "aliphatic sulfonate binding protein and SsuABC ABC transporter" +BW25113_0936__5prime ssuA__5prime 0 992401 992598 -1 246 0.045454545454545456 198 9 "aliphatic sulfonate binding protein and SsuABC ABC transporter" +BW25113_0936__3prime ssuA__3prime 0 991243 991440 -1 43 0.030303030303030304 198 6 "aliphatic sulfonate binding protein and SsuABC ABC transporter" +BW25113_0937 ssuE 0 992393 992968 -1 1537 0.11284722222222222 576 65 "NAD(P)H-dependent FMN reductase" +BW25113_0937__5prime ssuE__5prime 0 992969 993166 -1 159 0.05555555555555555 198 11 "NAD(P)H-dependent FMN reductase" +BW25113_0937__3prime ssuE__3prime 0 992195 992392 -1 245 0.06565656565656566 198 13 "NAD(P)H-dependent FMN reductase" +BW25113_0938 elfA 0 993324 993863 1 6071 0.3277777777777778 540 177 "laminin-binding fimbrin subunit" +BW25113_0938__5prime elfA__5prime 0 993126 993323 1 81 0.025252525252525252 198 5 "laminin-binding fimbrin subunit" +BW25113_0938__3prime elfA__3prime 0 993864 994061 1 778 0.1919191919191919 198 38 "laminin-binding fimbrin subunit" +BW25113_0939 elfD 0 993946 994647 1 5869 0.22364672364672364 702 157 "putative periplasmic pilin chaperone" +BW25113_0939__5prime elfD__5prime 0 993748 993945 1 430 0.10606060606060606 198 21 "putative periplasmic pilin chaperone" +BW25113_0939__3prime elfD__3prime 0 994648 994845 1 1736 0.2777777777777778 198 55 "putative periplasmic pilin chaperone" +BW25113_0940 elfC 0 994672 997272 1 12915 0.17377931564782775 2601 452 "putative outer membrane fimbrial subunit export usher protein" +BW25113_0940__5prime elfC__5prime 0 994474 994671 1 286 0.09595959595959595 198 19 "putative outer membrane fimbrial subunit export usher protein" +BW25113_0940__3prime elfC__3prime 0 997273 997470 1 1284 0.17676767676767677 198 35 "putative outer membrane fimbrial subunit export usher protein" +BW25113_0941 elfG 0 997263 998333 1 3833 0.11858076563958916 1071 127 "putative fimbrial-like adhesin protein" +BW25113_0941__5prime elfG__5prime 0 997065 997262 1 439 0.12121212121212122 198 24 "putative fimbrial-like adhesin protein" +BW25113_0941__3prime elfG__3prime 0 998334 998531 1 280 0.025252525252525252 198 5 "putative fimbrial-like adhesin protein" +BW25113_0942 ycbU 0 998345 998887 1 798 0.07366482504604052 543 40 "putative fimbriae protein" +BW25113_0942__5prime ycbU__5prime 0 998147 998344 1 509 0.08585858585858586 198 17 "putative fimbriae protein" +BW25113_0942__3prime ycbU__3prime 0 998888 999085 1 553 0.12121212121212122 198 24 "putative fimbriae protein" +BW25113_0943 ycbV 0 998895 999410 1 1222 0.11434108527131782 516 59 "putative fimbrial-like adhesin protein" +BW25113_0943__5prime ycbV__5prime 0 998697 998894 1 318 0.09595959595959595 198 19 "putative fimbrial-like adhesin protein" +BW25113_0943__3prime ycbV__3prime 0 999411 999608 1 387 0.10101010101010101 198 20 "putative fimbrial-like adhesin protein" +BW25113_0944 ycbF 0 999403 1000113 1 1696 0.10689170182841069 711 76 "putative periplasmic pilin chaperone" +BW25113_0944__5prime ycbF__5prime 0 999205 999402 1 379 0.1111111111111111 198 22 "putative periplasmic pilin chaperone" +BW25113_0944__3prime ycbF__3prime 0 1000114 1000311 1 286 0.05555555555555555 198 11 "putative periplasmic pilin chaperone" +BW25113_0945 pyrD 0 1000224 1001234 1 4441 0.17012858555885263 1011 172 "dihydro-orotate oxidase and FMN-linked" +BW25113_0945__5prime pyrD__5prime 0 1000026 1000223 1 195 0.030303030303030304 198 6 "dihydro-orotate oxidase and FMN-linked" +BW25113_0945__3prime pyrD__3prime 0 1001235 1001432 1 1058 0.15151515151515152 198 30 "dihydro-orotate oxidase and FMN-linked" +BW25113_0946 zapC 0 1001408 1001950 1 1550 0.10681399631675875 543 58 "FtsZ stabilizer" +BW25113_0946__5prime zapC__5prime 0 1001210 1001407 1 977 0.13636363636363635 198 27 "FtsZ stabilizer" +BW25113_0946__3prime zapC__3prime 0 1001951 1002148 1 372 0.07575757575757576 198 15 "FtsZ stabilizer" +BW25113_0947 ycbX 0 1001947 1003056 -1 2324 0.08558558558558559 1110 95 "6-N-hydroxylaminopurine detoxification oxidoreductase" +BW25113_0947__5prime ycbX__5prime 0 1003057 1003254 -1 468 0.09595959595959595 198 19 "6-N-hydroxylaminopurine detoxification oxidoreductase" +BW25113_0947__3prime ycbX__3prime 0 1001749 1001946 -1 508 0.11616161616161616 198 23 "6-N-hydroxylaminopurine detoxification oxidoreductase" +BW25113_0948 rlmL 0 1003300 1005408 1 4847 0.09862494073020389 2109 208 "fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase and SAM-dependent" +BW25113_0948__5prime rlmL__5prime 0 1003102 1003299 1 428 0.1111111111111111 198 22 "fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase and SAM-dependent" +BW25113_0948__3prime rlmL__3prime 0 1005409 1005606 1 231 0.03535353535353535 198 7 "fused 23S rRNA m(2)G2445 and m(7)G2069 methyltransferase and SAM-dependent" +BW25113_0949 uup 0 1005420 1007327 1 2380 0.06446540880503145 1908 123 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0949__5prime uup__5prime 0 1005222 1005419 1 231 0.04040404040404041 198 8 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_0949__3prime uup__3prime 0 1007328 1007525 1 262 0.10101010101010101 198 20 "putative transporter subunit of ABC superfamily: ATP-binding component" +1007374_1007403 1007374_1007403 0 1007375 1007403 1 18 0.034482758620689655 29 1 "1007374_1007403" +1007374_1007403__5prime 1007374_1007403__5prime 0 1007177 1007374 1 212 0.0707070707070707 198 14 "1007374_1007403" +1007374_1007403__3prime 1007374_1007403__3prime 0 1007404 1007601 1 286 0.10606060606060606 198 21 "1007374_1007403" +BW25113_0950 pqiA 0 1007457 1008710 1 2601 0.10845295055821372 1254 136 "paraquat-inducible and SoxRS-regulated inner membrane protein" +BW25113_0950__5prime pqiA__5prime 0 1007259 1007456 1 234 0.09090909090909091 198 18 "paraquat-inducible and SoxRS-regulated inner membrane protein" +BW25113_0950__3prime pqiA__3prime 0 1008711 1008908 1 127 0.04040404040404041 198 8 "paraquat-inducible and SoxRS-regulated inner membrane protein" +BW25113_0951 pqiB 0 1008715 1010355 1 3297 0.09262644728823888 1641 152 "paraquat-inducible and SoxRS-regulated MCE domain protein" +BW25113_0951__5prime pqiB__5prime 0 1008517 1008714 1 452 0.05555555555555555 198 11 "paraquat-inducible and SoxRS-regulated MCE domain protein" +BW25113_0951__3prime pqiB__3prime 0 1010356 1010553 1 700 0.1717171717171717 198 34 "paraquat-inducible and SoxRS-regulated MCE domain protein" +BW25113_0952 pqiC 0 1010352 1010915 1 1533 0.12943262411347517 564 73 "DUF330 family putative lipoprotein" +BW25113_0952__5prime pqiC__5prime 0 1010154 1010351 1 420 0.1111111111111111 198 22 "DUF330 family putative lipoprotein" +BW25113_0952__3prime pqiC__3prime 0 1010916 1011113 1 11 0.010101010101010102 198 2 "DUF330 family putative lipoprotein" +BW25113_0953 rmf 0 1011171 1011338 1 313 0.08928571428571429 168 15 "ribosome modulation factor" +BW25113_0953__5prime rmf__5prime 0 1010973 1011170 1 0 0.0 198 0 "ribosome modulation factor" +BW25113_0953__3prime rmf__3prime 0 1011339 1011536 1 43 0.020202020202020204 198 4 "ribosome modulation factor" +BW25113_0954 fabA 0 1011408 1011926 -1 36 0.005780346820809248 519 3 "beta-hydroxydecanoyl thioester dehydrase" +BW25113_0954__5prime fabA__5prime 0 1011927 1012124 -1 436 0.07575757575757576 198 15 "beta-hydroxydecanoyl thioester dehydrase" +BW25113_0954__3prime fabA__3prime 0 1011210 1011407 -1 285 0.06060606060606061 198 12 "beta-hydroxydecanoyl thioester dehydrase" +BW25113_0955 ycbZ 0 1011995 1013755 -1 2764 0.0817717206132879 1761 144 "putative peptidase" +BW25113_0955__5prime ycbZ__5prime 0 1013756 1013953 -1 197 0.050505050505050504 198 10 "putative peptidase" +BW25113_0955__3prime ycbZ__3prime 0 1011797 1011994 -1 158 0.015151515151515152 198 3 "putative peptidase" +BW25113_0956 matP 0 1013941 1014393 1 435 0.04856512141280353 453 22 "Ter macrodomain organizer matS-binding protein" +BW25113_0956__5prime matP__5prime 0 1013743 1013940 1 190 0.045454545454545456 198 9 "Ter macrodomain organizer matS-binding protein" +BW25113_0956__3prime matP__3prime 0 1014394 1014591 1 258 0.10606060606060606 198 21 "Ter macrodomain organizer matS-binding protein" +BW25113_0957 ompA 0 1014469 1015509 -1 1492 0.0643611911623439 1041 67 "outer membrane protein A (3a;II*;G;d)" +BW25113_0957__5prime ompA__5prime 0 1015510 1015707 -1 232 0.07575757575757576 198 15 "outer membrane protein A (3a;II*;G;d)" +BW25113_0957__3prime ompA__3prime 0 1014271 1014468 -1 178 0.030303030303030304 198 6 "outer membrane protein A (3a;II*;G;d)" +BW25113_0958 sulA 0 1015866 1016375 -1 1635 0.12156862745098039 510 62 "SOS cell division inhibitor" +BW25113_0958__5prime sulA__5prime 0 1016376 1016573 -1 42 0.020202020202020204 198 4 "SOS cell division inhibitor" +BW25113_0958__3prime sulA__3prime 0 1015668 1015865 -1 101 0.010101010101010102 198 2 "SOS cell division inhibitor" +BW25113_0959 sxy 0 1016594 1017223 1 2756 0.09841269841269841 630 62 "CRP-S-dependent promoter expression factor" +BW25113_0959__5prime sxy__5prime 0 1016396 1016593 1 42 0.020202020202020204 198 4 "CRP-S-dependent promoter expression factor" +BW25113_0959__3prime sxy__3prime 0 1017224 1017421 1 490 0.08080808080808081 198 16 "CRP-S-dependent promoter expression factor" +BW25113_0960 yccS 0 1017186 1019339 -1 4954 0.10259981429897864 2154 221 "putative transporter and FUSC superfamily inner membrane protein and tandem domains" +BW25113_0960__5prime yccS__5prime 0 1019340 1019537 -1 509 0.12626262626262627 198 25 "putative transporter and FUSC superfamily inner membrane protein and tandem domains" +BW25113_0960__3prime yccS__3prime 0 1016988 1017185 -1 179 0.06565656565656566 198 13 "putative transporter and FUSC superfamily inner membrane protein and tandem domains" +BW25113_0961 yccF 0 1019358 1019804 -1 865 0.09395973154362416 447 42 "DUF307 family inner membrane protein" +BW25113_0961__5prime yccF__5prime 0 1019805 1020002 -1 477 0.10101010101010101 198 20 "DUF307 family inner membrane protein" +BW25113_0961__3prime yccF__3prime 0 1019160 1019357 -1 299 0.06060606060606061 198 12 "DUF307 family inner membrane protein" +BW25113_0962 helD 0 1019927 1021981 1 3042 0.06763990267639902 2055 139 "DNA helicase IV" +BW25113_0962__5prime helD__5prime 0 1019729 1019926 1 439 0.09090909090909091 198 18 "DNA helicase IV" +BW25113_0962__3prime helD__3prime 0 1021982 1022179 1 507 0.11616161616161616 198 23 "DNA helicase IV" +BW25113_0963 mgsA 0 1022013 1022471 -1 1506 0.13725490196078433 459 63 "methylglyoxal synthase" +BW25113_0963__5prime mgsA__5prime 0 1022472 1022669 -1 90 0.005050505050505051 198 1 "methylglyoxal synthase" +BW25113_0963__3prime mgsA__3prime 0 1021815 1022012 -1 219 0.015151515151515152 198 3 "methylglyoxal synthase" +BW25113_0964 yccT 0 1022567 1023229 -1 939 0.06033182503770739 663 40 "UPF0319 family protein" +BW25113_0964__5prime yccT__5prime 0 1023230 1023427 -1 522 0.11616161616161616 198 23 "UPF0319 family protein" +BW25113_0964__3prime yccT__3prime 0 1022369 1022566 -1 539 0.06060606060606061 198 12 "UPF0319 family protein" +BW25113_0965 yccU 0 1023402 1023815 1 544 0.08454106280193237 414 35 "putative CoA-binding protein" +BW25113_0965__5prime yccU__5prime 0 1023204 1023401 1 522 0.11616161616161616 198 23 "putative CoA-binding protein" +BW25113_0965__3prime yccU__3prime 0 1023816 1024013 1 585 0.10606060606060606 198 21 "putative CoA-binding protein" +1023821_1023845 1023821_1023845 0 1023822 1023845 1 0 0.0 24 0 "1023821_1023845" +1023821_1023845__5prime 1023821_1023845__5prime 0 1023624 1023821 1 281 0.08080808080808081 198 16 "1023821_1023845" +1023821_1023845__3prime 1023821_1023845__3prime 0 1023846 1024043 1 654 0.12121212121212122 198 24 "1023821_1023845" +BW25113_0966 hspQ 0 1023860 1024177 -1 943 0.1069182389937107 318 34 "heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein" +BW25113_0966__5prime hspQ__5prime 0 1024178 1024375 -1 210 0.06060606060606061 198 12 "heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein" +BW25113_0966__3prime hspQ__3prime 0 1023662 1023859 -1 281 0.08080808080808081 198 16 "heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein" +BW25113_0967 rlmI 0 1024235 1025425 -1 1826 0.0688497061293031 1191 82 "23S rRNA m(5)C1962 methyltransferase and SAM-dependent" +BW25113_0967__5prime rlmI__5prime 0 1025426 1025623 -1 294 0.08585858585858586 198 17 "23S rRNA m(5)C1962 methyltransferase and SAM-dependent" +BW25113_0967__3prime rlmI__3prime 0 1024037 1024234 -1 289 0.050505050505050504 198 10 "23S rRNA m(5)C1962 methyltransferase and SAM-dependent" +BW25113_0968 yccX 0 1025520 1025798 1 492 0.07168458781362007 279 20 "weak acylphosphatase" +BW25113_0968__5prime yccX__5prime 0 1025322 1025519 1 272 0.08585858585858586 198 17 "weak acylphosphatase" +BW25113_0968__3prime yccX__3prime 0 1025799 1025996 1 0 0.0 198 0 "weak acylphosphatase" +BW25113_0969 tusE 0 1025795 1026124 -1 74 0.006060606060606061 330 2 "mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" +BW25113_0969__5prime tusE__5prime 0 1026125 1026322 -1 339 0.07575757575757576 198 15 "mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" +BW25113_0969__3prime tusE__3prime 0 1025597 1025794 -1 429 0.08585858585858586 198 17 "mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" +BW25113_0970 yccA 0 1026215 1026874 -1 2422 0.17424242424242425 660 115 "HflBKC-binding inner membrane protein and UPF0005 family" +BW25113_0970__5prime yccA__5prime 0 1026875 1027072 -1 779 0.13131313131313133 198 26 "HflBKC-binding inner membrane protein and UPF0005 family" +BW25113_0970__3prime yccA__3prime 0 1026017 1026214 -1 201 0.03535353535353535 198 7 "HflBKC-binding inner membrane protein and UPF0005 family" +BW25113_0971 serT 0 1027081 1027168 -1 0 0.0 88 0 "tRNA-Ser" +BW25113_0971__5prime serT__5prime 0 1027169 1027366 -1 0 0.0 198 0 "tRNA-Ser" +BW25113_0971__3prime serT__3prime 0 1026883 1027080 -1 779 0.13131313131313133 198 26 "tRNA-Ser" +BW25113_0972 hyaA 0 1027595 1028713 1 2424 0.09294012511170688 1119 104 "hydrogenase 1 and small subunit" +BW25113_0972__5prime hyaA__5prime 0 1027397 1027594 1 165 0.08080808080808081 198 16 "hydrogenase 1 and small subunit" +BW25113_0972__3prime hyaA__3prime 0 1028714 1028911 1 548 0.0707070707070707 198 14 "hydrogenase 1 and small subunit" +BW25113_0973 hyaB 0 1028710 1030503 1 2952 0.06075808249721293 1794 109 "hydrogenase 1 and large subunit" +BW25113_0973__5prime hyaB__5prime 0 1028512 1028709 1 606 0.06060606060606061 198 12 "hydrogenase 1 and large subunit" +BW25113_0973__3prime hyaB__3prime 0 1030504 1030701 1 774 0.1717171717171717 198 34 "hydrogenase 1 and large subunit" +BW25113_0974 hyaC 0 1030522 1031229 1 1926 0.12429378531073447 708 88 "hydrogenase 1 and b-type cytochrome subunit" +BW25113_0974__5prime hyaC__5prime 0 1030324 1030521 1 619 0.0707070707070707 198 14 "hydrogenase 1 and b-type cytochrome subunit" +BW25113_0974__3prime hyaC__3prime 0 1031230 1031427 1 574 0.15151515151515152 198 30 "hydrogenase 1 and b-type cytochrome subunit" +BW25113_0975 hyaD 0 1031226 1031813 1 1079 0.1054421768707483 588 62 "hydrogenase 1 maturation protease" +BW25113_0975__5prime hyaD__5prime 0 1031028 1031225 1 757 0.13636363636363635 198 27 "hydrogenase 1 maturation protease" +BW25113_0975__3prime hyaD__3prime 0 1031814 1032011 1 252 0.08585858585858586 198 17 "hydrogenase 1 maturation protease" +BW25113_0976 hyaE 0 1031810 1032208 1 723 0.10776942355889724 399 43 "putative HyaA chaperone" +BW25113_0976__5prime hyaE__5prime 0 1031612 1031809 1 222 0.06565656565656566 198 13 "putative HyaA chaperone" +BW25113_0976__3prime hyaE__3prime 0 1032209 1032406 1 307 0.08585858585858586 198 17 "putative HyaA chaperone" +BW25113_0977 hyaF 0 1032205 1033062 1 1532 0.07692307692307693 858 66 "protein involved in nickel incorporation into hydrogenase-1 proteins" +BW25113_0977__5prime hyaF__5prime 0 1032007 1032204 1 438 0.12626262626262627 198 25 "protein involved in nickel incorporation into hydrogenase-1 proteins" +BW25113_0977__3prime hyaF__3prime 0 1033063 1033260 1 349 0.09595959595959595 198 19 "protein involved in nickel incorporation into hydrogenase-1 proteins" +BW25113_0978 cbdA 0 1033196 1034740 1 3381 0.10485436893203884 1545 162 "cytochrome bd-II oxidase and subunit I" +BW25113_0978__5prime cbdA__5prime 0 1032998 1033195 1 219 0.07575757575757576 198 15 "cytochrome bd-II oxidase and subunit I" +BW25113_0978__3prime cbdA__3prime 0 1034741 1034938 1 616 0.1111111111111111 198 22 "cytochrome bd-II oxidase and subunit I" +BW25113_0979 cbdB 0 1034752 1035888 1 3464 0.09938434476693052 1137 113 "cytochrome bd-II oxidase and subunit II" +BW25113_0979__5prime cbdB__5prime 0 1034554 1034751 1 444 0.11616161616161616 198 23 "cytochrome bd-II oxidase and subunit II" +BW25113_0979__3prime cbdB__3prime 0 1035889 1036086 1 864 0.1919191919191919 198 38 "cytochrome bd-II oxidase and subunit II" +BW25113_4592 cbdX 0 1035901 1035993 1 409 0.22580645161290322 93 21 "putative cytochrome bd-II oxidase subunit" +BW25113_4592__5prime cbdX__5prime 0 1035703 1035900 1 1289 0.16161616161616163 198 32 "putative cytochrome bd-II oxidase subunit" +BW25113_4592__3prime cbdX__3prime 0 1035994 1036191 1 1091 0.18181818181818182 198 36 "putative cytochrome bd-II oxidase subunit" +1035998_1036034 1035998_1036034 0 1035999 1036034 1 288 0.2777777777777778 36 10 "1035998_1036034" +1035998_1036034__5prime 1035998_1036034__5prime 0 1035801 1035998 1 1356 0.20707070707070707 198 41 "1035998_1036034" +1035998_1036034__3prime 1035998_1036034__3prime 0 1036035 1036232 1 786 0.12626262626262627 198 25 "1035998_1036034" +BW25113_0980 appA 0 1036073 1037371 1 3178 0.11085450346420324 1299 144 "phosphoanhydride phosphorylase" +BW25113_0980__5prime appA__5prime 0 1035875 1036072 1 994 0.21212121212121213 198 42 "phosphoanhydride phosphorylase" +BW25113_0980__3prime appA__3prime 0 1037372 1037569 1 247 0.07575757575757576 198 15 "phosphoanhydride phosphorylase" +1037440_1037474 1037440_1037474 0 1037441 1037474 1 27 0.029411764705882353 34 1 "1037440_1037474" +1037440_1037474__5prime 1037440_1037474__5prime 0 1037243 1037440 1 199 0.06565656565656566 198 13 "1037440_1037474" +1037440_1037474__3prime 1037440_1037474__3prime 0 1037475 1037672 1 483 0.09090909090909091 198 18 "1037440_1037474" +BW25113_0981 etk 0 1037486 1039666 -1 4247 0.09720311783585511 2181 212 "tyrosine-protein kinase and role in O-antigen capsule formation" +BW25113_0981__5prime etk__5prime 0 1039667 1039864 -1 465 0.11616161616161616 198 23 "tyrosine-protein kinase and role in O-antigen capsule formation" +BW25113_0981__3prime etk__3prime 0 1037288 1037485 -1 163 0.050505050505050504 198 10 "tyrosine-protein kinase and role in O-antigen capsule formation" +BW25113_0982 etp 0 1039686 1040132 -1 728 0.07829977628635347 447 35 "Protein-tyrosine-phosphatase and role in O-antigen capsule formation; dephosphorylates Etk-P" +BW25113_0982__5prime etp__5prime 0 1040133 1040330 -1 571 0.09595959595959595 198 19 "Protein-tyrosine-phosphatase and role in O-antigen capsule formation; dephosphorylates Etk-P" +BW25113_0982__3prime etp__3prime 0 1039488 1039685 -1 367 0.1111111111111111 198 22 "Protein-tyrosine-phosphatase and role in O-antigen capsule formation; dephosphorylates Etk-P" +BW25113_0983 gfcE 0 1040120 1041259 -1 2555 0.08596491228070176 1140 98 "putative O-antigen capsule outer membrane auxillary protein export channel" +BW25113_0983__5prime gfcE__5prime 0 1041260 1041457 -1 490 0.12121212121212122 198 24 "putative O-antigen capsule outer membrane auxillary protein export channel" +BW25113_0983__3prime gfcE__3prime 0 1039922 1040119 -1 186 0.04040404040404041 198 8 "putative O-antigen capsule outer membrane auxillary protein export channel" +BW25113_0984 gfcD 0 1041305 1043401 -1 4644 0.09632808774439676 2097 202 "putative O-antigen capsule production periplasmic protein" +BW25113_0984__5prime gfcD__5prime 0 1043402 1043599 -1 774 0.18181818181818182 198 36 "putative O-antigen capsule production periplasmic protein" +BW25113_0984__3prime gfcD__3prime 0 1041107 1041304 -1 333 0.08080808080808081 198 16 "putative O-antigen capsule production periplasmic protein" +BW25113_0985 gfcC 0 1043401 1044147 -1 2533 0.15796519410977242 747 118 "putative O-antigen capsule production periplasmic protein" +BW25113_0985__5prime gfcC__5prime 0 1044148 1044345 -1 1750 0.3282828282828283 198 65 "putative O-antigen capsule production periplasmic protein" +BW25113_0985__3prime gfcC__3prime 0 1043203 1043400 -1 520 0.08585858585858586 198 17 "putative O-antigen capsule production periplasmic protein" +BW25113_0986 gfcB 0 1044144 1044788 -1 5892 0.3457364341085271 645 223 "O-antigen capsule production lipoprotein" +BW25113_0986__5prime gfcB__5prime 0 1044789 1044986 -1 1750 0.25757575757575757 198 51 "O-antigen capsule production lipoprotein" +BW25113_0986__3prime gfcB__3prime 0 1043946 1044143 -1 684 0.17676767676767677 198 35 "O-antigen capsule production lipoprotein" +BW25113_0987 gfcA 0 1044895 1045200 -1 1694 0.15359477124183007 306 47 "O-antigen capsule production threonine-rich inner membrane protein" +BW25113_0987__5prime gfcA__5prime 0 1045201 1045398 -1 503 0.2222222222222222 198 44 "O-antigen capsule production threonine-rich inner membrane protein" +BW25113_0987__3prime gfcA__3prime 0 1044697 1044894 -1 1029 0.2222222222222222 198 44 "O-antigen capsule production threonine-rich inner membrane protein" +BW25113_4516 insA 0 1045289 1045564 1 677 0.2210144927536232 276 61 "IS1 repressor TnpA" +BW25113_4516__5prime insA__5prime 0 1045091 1045288 1 432 0.11616161616161616 198 23 "IS1 repressor TnpA" +BW25113_4516__3prime insA__3prime 0 1045565 1045762 1 599 0.2222222222222222 198 44 "IS1 repressor TnpA" +BW25113_0988 insB1 0 1045483 1045986 1 1925 0.25793650793650796 504 130 "IS1 transposase B" +BW25113_0988__5prime insB1__5prime 0 1045285 1045482 1 550 0.2474747474747475 198 49 "IS1 transposase B" +BW25113_0988__3prime insB1__3prime 0 1045987 1046184 1 2047 0.2676767676767677 198 53 "IS1 transposase B" +BW25113_0989 cspH 0 1046419 1046631 -1 2267 0.3427230046948357 213 73 "stress protein and member of the CspA-family" +BW25113_0989__5prime cspH__5prime 0 1046632 1046829 -1 1844 0.2727272727272727 198 54 "stress protein and member of the CspA-family" +BW25113_0989__3prime cspH__3prime 0 1046221 1046418 -1 666 0.12626262626262627 198 25 "stress protein and member of the CspA-family" +BW25113_0990 cspG 0 1046917 1047129 1 1096 0.18309859154929578 213 39 "cold shock protein homolog and cold-inducible" +BW25113_0990__5prime cspG__5prime 0 1046719 1046916 1 1186 0.2878787878787879 198 57 "cold shock protein homolog and cold-inducible" +BW25113_0990__3prime cspG__3prime 0 1047130 1047327 1 790 0.16666666666666666 198 33 "cold shock protein homolog and cold-inducible" +BW25113_0991 ymcE 0 1047303 1047533 1 353 0.09956709956709957 231 23 "cold shock gene" +BW25113_0991__5prime ymcE__5prime 0 1047105 1047302 1 1045 0.20202020202020202 198 40 "cold shock gene" +BW25113_0991__3prime ymcE__3prime 0 1047534 1047731 1 83 0.030303030303030304 198 6 "cold shock gene" +BW25113_4517 gnsA 0 1047523 1047696 1 66 0.028735632183908046 174 5 "putative phosphatidylethanolamine synthesis regulator" +BW25113_4517__5prime gnsA__5prime 0 1047325 1047522 1 344 0.1111111111111111 198 22 "putative phosphatidylethanolamine synthesis regulator" +BW25113_4517__3prime gnsA__3prime 0 1047697 1047894 1 503 0.12626262626262627 198 25 "putative phosphatidylethanolamine synthesis regulator" +BW25113_0992 yccM 0 1047745 1048818 -1 3661 0.1266294227188082 1074 136 "putative 4Fe-4S membrane protein" +BW25113_0992__5prime yccM__5prime 0 1048819 1049016 -1 371 0.12626262626262627 198 25 "putative 4Fe-4S membrane protein" +BW25113_0992__3prime yccM__3prime 0 1047547 1047744 -1 44 0.025252525252525252 198 5 "putative 4Fe-4S membrane protein" +BW25113_0993 torS 0 1048890 1051634 -1 3983 0.07140255009107468 2745 196 "hybrid sensory histidine kinase in two-component regulatory system with TorR" +BW25113_0993__5prime torS__5prime 0 1051635 1051832 -1 188 0.03535353535353535 198 7 "hybrid sensory histidine kinase in two-component regulatory system with TorR" +BW25113_0993__3prime torS__3prime 0 1048692 1048889 -1 536 0.11616161616161616 198 23 "hybrid sensory histidine kinase in two-component regulatory system with TorR" +1049777_1050545 1049777_1050545 0 1049778 1050545 1 985 0.06640625 768 51 "1049777_1050545" +1049777_1050545__5prime 1049777_1050545__5prime 0 1049580 1049777 1 177 0.045454545454545456 198 9 "1049777_1050545" +1049777_1050545__3prime 1049777_1050545__3prime 0 1050546 1050743 1 703 0.09595959595959595 198 19 "1049777_1050545" +BW25113_0994 torT 0 1051717 1052745 1 1294 0.0641399416909621 1029 66 "periplasmic sensory protein associated with the TorRS two-component regulatory system" +BW25113_0994__5prime torT__5prime 0 1051519 1051716 1 421 0.11616161616161616 198 23 "periplasmic sensory protein associated with the TorRS two-component regulatory system" +BW25113_0994__3prime torT__3prime 0 1052746 1052943 1 392 0.08585858585858586 198 17 "periplasmic sensory protein associated with the TorRS two-component regulatory system" +BW25113_0995 torR 0 1052718 1053410 -1 1633 0.09668109668109669 693 67 "response regulator in two-component regulatory system with TorS" +BW25113_0995__5prime torR__5prime 0 1053411 1053608 -1 291 0.09090909090909091 198 18 "response regulator in two-component regulatory system with TorS" +BW25113_0995__3prime torR__3prime 0 1052520 1052717 -1 17 0.010101010101010102 198 2 "response regulator in two-component regulatory system with TorS" +BW25113_0996 torC 0 1053540 1054712 1 2001 0.0733162830349531 1173 86 "trimethylamine N-oxide (TMAO) reductase I and cytochrome c-type subunit" +BW25113_0996__5prime torC__5prime 0 1053342 1053539 1 332 0.08585858585858586 198 17 "trimethylamine N-oxide (TMAO) reductase I and cytochrome c-type subunit" +BW25113_0996__3prime torC__3prime 0 1054713 1054910 1 23 0.010101010101010102 198 2 "trimethylamine N-oxide (TMAO) reductase I and cytochrome c-type subunit" +BW25113_0997 torA 0 1054712 1057258 1 4473 0.06949352179034157 2547 177 "trimethylamine N-oxide (TMAO) reductase I and catalytic subunit" +BW25113_0997__5prime torA__5prime 0 1054514 1054711 1 274 0.06565656565656566 198 13 "trimethylamine N-oxide (TMAO) reductase I and catalytic subunit" +BW25113_0997__3prime torA__3prime 0 1057259 1057456 1 406 0.05555555555555555 198 11 "trimethylamine N-oxide (TMAO) reductase I and catalytic subunit" +BW25113_0998 torD 0 1057255 1057854 1 810 0.04833333333333333 600 29 "TorA-maturation chaperone" +BW25113_0998__5prime torD__5prime 0 1057057 1057254 1 825 0.12626262626262627 198 25 "TorA-maturation chaperone" +BW25113_0998__3prime torD__3prime 0 1057855 1058052 1 255 0.08080808080808081 198 16 "TorA-maturation chaperone" +1057862_1057996 1057862_1057996 0 1057863 1057996 1 60 0.029850746268656716 134 4 "1057862_1057996" +1057862_1057996__5prime 1057862_1057996__5prime 0 1057665 1057862 1 278 0.0707070707070707 198 14 "1057862_1057996" +1057862_1057996__3prime 1057862_1057996__3prime 0 1057997 1058194 1 441 0.13131313131313133 198 26 "1057862_1057996" +BW25113_0999 cbpM 0 1058006 1058311 -1 508 0.08496732026143791 306 26 "modulator of CbpA co-chaperone" +BW25113_0999__5prime cbpM__5prime 0 1058312 1058509 -1 135 0.025252525252525252 198 5 "modulator of CbpA co-chaperone" +BW25113_0999__3prime cbpM__3prime 0 1057808 1058005 -1 104 0.045454545454545456 198 9 "modulator of CbpA co-chaperone" +BW25113_1000 cbpA 0 1058311 1059231 -1 1493 0.06188925081433225 921 57 "DnaK co-chaperone; curved DNA-binding protein" +BW25113_1000__5prime cbpA__5prime 0 1059232 1059429 -1 387 0.12121212121212122 198 24 "DnaK co-chaperone; curved DNA-binding protein" +BW25113_1000__3prime cbpA__3prime 0 1058113 1058310 -1 248 0.050505050505050504 198 10 "DnaK co-chaperone; curved DNA-binding protein" +BW25113_1001 yccE 0 1059492 1060748 1 3161 0.1280827366746221 1257 161 "uncharacterized protein" +BW25113_1001__5prime yccE__5prime 0 1059294 1059491 1 373 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_1001__3prime yccE__3prime 0 1060749 1060946 1 1044 0.18686868686868688 198 37 "uncharacterized protein" +BW25113_1002 agp 0 1061041 1062282 1 3565 0.13687600644122383 1242 170 "glucose-1-phosphatase/inositol phosphatase" +BW25113_1002__5prime agp__5prime 0 1060843 1061040 1 1048 0.1717171717171717 198 34 "glucose-1-phosphatase/inositol phosphatase" +BW25113_1002__3prime agp__3prime 0 1062283 1062480 1 376 0.06060606060606061 198 12 "glucose-1-phosphatase/inositol phosphatase" +BW25113_1003 yccJ 0 1062320 1062547 -1 391 0.06140350877192982 228 14 "uncharacterized protein" +BW25113_1003__5prime yccJ__5prime 0 1062548 1062745 -1 527 0.10101010101010101 198 20 "uncharacterized protein" +BW25113_1003__3prime yccJ__3prime 0 1062122 1062319 -1 551 0.13636363636363635 198 27 "uncharacterized protein" +BW25113_1004 wrbA 0 1062568 1063164 -1 1540 0.09882747068676717 597 59 "NAD(P)H:quinone oxidoreductase" +BW25113_1004__5prime wrbA__5prime 0 1063165 1063362 -1 217 0.06060606060606061 198 12 "NAD(P)H:quinone oxidoreductase" +BW25113_1004__3prime wrbA__3prime 0 1062370 1062567 -1 409 0.0707070707070707 198 14 "NAD(P)H:quinone oxidoreductase" +BW25113_4518 ymdF 0 1063537 1063710 1 706 0.1206896551724138 174 21 "KGG family protein" +BW25113_4518__5prime ymdF__5prime 0 1063339 1063536 1 1163 0.19696969696969696 198 39 "KGG family protein" +BW25113_4518__3prime ymdF__3prime 0 1063711 1063908 1 34 0.010101010101010102 198 2 "KGG family protein" +1063809_1063907 1063809_1063907 0 1063810 1063907 1 5 0.01020408163265306 98 1 "1063809_1063907" +1063809_1063907__5prime 1063809_1063907__5prime 0 1063612 1063809 1 338 0.045454545454545456 198 9 "1063809_1063907" +1063809_1063907__3prime 1063809_1063907__3prime 0 1063908 1064105 1 397 0.0707070707070707 198 14 "1063809_1063907" +BW25113_1006 rutG 0 1063967 1065295 -1 3477 0.0835214446952596 1329 111 "pyrimidine permease" +BW25113_1006__5prime rutG__5prime 0 1065296 1065493 -1 413 0.08585858585858586 198 17 "pyrimidine permease" +BW25113_1006__3prime rutG__3prime 0 1063769 1063966 -1 221 0.050505050505050504 198 10 "pyrimidine permease" +BW25113_1007 rutF 0 1065316 1065810 -1 1253 0.09292929292929293 495 46 "flavin:NADH reductase" +BW25113_1007__5prime rutF__5prime 0 1065811 1066008 -1 344 0.06565656565656566 198 13 "flavin:NADH reductase" +BW25113_1007__3prime rutF__3prime 0 1065118 1065315 -1 259 0.10101010101010101 198 20 "flavin:NADH reductase" +BW25113_1008 rutE 0 1065821 1066411 -1 1256 0.07614213197969544 591 45 "putative malonic semialdehyde reductase" +BW25113_1008__5prime rutE__5prime 0 1066412 1066609 -1 591 0.10606060606060606 198 21 "putative malonic semialdehyde reductase" +BW25113_1008__3prime rutE__3prime 0 1065623 1065820 -1 861 0.14646464646464646 198 29 "putative malonic semialdehyde reductase" +BW25113_1009 rutD 0 1066421 1067221 -1 1568 0.11235955056179775 801 90 "putative aminoacrylate hydrolase and reactive intermediate detoxification" +BW25113_1009__5prime rutD__5prime 0 1067222 1067419 -1 312 0.10101010101010101 198 20 "putative aminoacrylate hydrolase and reactive intermediate detoxification" +BW25113_1009__3prime rutD__3prime 0 1066223 1066420 -1 639 0.13636363636363635 198 27 "putative aminoacrylate hydrolase and reactive intermediate detoxification" +BW25113_1010 rutC 0 1067229 1067615 -1 1059 0.1111111111111111 387 43 "putative aminoacrylate deaminase and reactive intermediate detoxification; weak enamine/imine deaminase activity" +BW25113_1010__5prime rutC__5prime 0 1067616 1067813 -1 159 0.0707070707070707 198 14 "putative aminoacrylate deaminase and reactive intermediate detoxification; weak enamine/imine deaminase activity" +BW25113_1010__3prime rutC__3prime 0 1067031 1067228 -1 350 0.11616161616161616 198 23 "putative aminoacrylate deaminase and reactive intermediate detoxification; weak enamine/imine deaminase activity" +BW25113_1011 rutB 0 1067627 1068319 -1 644 0.06204906204906205 693 43 "ureidoacrylate amidohydrolase" +BW25113_1011__5prime rutB__5prime 0 1068320 1068517 -1 177 0.0707070707070707 198 14 "ureidoacrylate amidohydrolase" +BW25113_1011__3prime rutB__3prime 0 1067429 1067626 -1 666 0.1111111111111111 198 22 "ureidoacrylate amidohydrolase" +1068317_1068411 1068317_1068411 0 1068318 1068411 1 82 0.06382978723404255 94 6 "1068317_1068411" +1068317_1068411__5prime 1068317_1068411__5prime 0 1068120 1068317 1 268 0.06565656565656566 198 13 "1068317_1068411" +1068317_1068411__3prime 1068317_1068411__3prime 0 1068412 1068609 1 192 0.05555555555555555 198 11 "1068317_1068411" +BW25113_1012 rutA 0 1068319 1069467 -1 1638 0.07571801566579635 1149 87 "pyrimidine oxygenase and FMN-dependent" +BW25113_1012__5prime rutA__5prime 0 1069468 1069665 -1 41 0.020202020202020204 198 4 "pyrimidine oxygenase and FMN-dependent" +BW25113_1012__3prime rutA__3prime 0 1068121 1068318 -1 268 0.06565656565656566 198 13 "pyrimidine oxygenase and FMN-dependent" +BW25113_1013 rutR 0 1069698 1070336 1 689 0.07981220657276995 639 51 "rut operon transcriptional repressor for" +BW25113_1013__5prime rutR__5prime 0 1069500 1069697 1 150 0.050505050505050504 198 10 "rut operon transcriptional repressor for" +BW25113_1013__3prime rutR__3prime 0 1070337 1070534 1 460 0.0707070707070707 198 14 "rut operon transcriptional repressor for" +1070340_1070368 1070340_1070368 0 1070341 1070368 1 96 0.14285714285714285 28 4 "1070340_1070368" +1070340_1070368__5prime 1070340_1070368__5prime 0 1070143 1070340 1 36 0.025252525252525252 198 5 "1070340_1070368" +1070340_1070368__3prime 1070340_1070368__3prime 0 1070369 1070566 1 531 0.05555555555555555 198 11 "1070340_1070368" +BW25113_1014 putA 0 1070376 1074338 -1 9135 0.08503658844309867 3963 337 "fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase" +BW25113_1014__5prime putA__5prime 0 1074339 1074536 -1 153 0.045454545454545456 198 9 "fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase" +BW25113_1014__3prime putA__3prime 0 1070178 1070375 -1 132 0.045454545454545456 198 9 "fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase" +BW25113_1015 putP 0 1074761 1076269 1 3096 0.0828363154406892 1509 125 "proline:sodium symporter" +BW25113_1015__5prime putP__5prime 0 1074563 1074760 1 366 0.06565656565656566 198 13 "proline:sodium symporter" +BW25113_1015__3prime putP__3prime 0 1076270 1076467 1 668 0.14646464646464646 198 29 "proline:sodium symporter" +1076567_1076601 1076567_1076601 0 1076568 1076601 1 0 0.0 34 0 "1076567_1076601" +1076567_1076601__5prime 1076567_1076601__5prime 0 1076370 1076567 1 511 0.09595959595959595 198 19 "1076567_1076601" +1076567_1076601__3prime 1076567_1076601__3prime 0 1076602 1076799 1 169 0.03535353535353535 198 7 "1076567_1076601" +BW25113_4490 efeU 0 1076812 1077641 1 1644 0.0819277108433735 830 68 "1076811_1077641" +BW25113_4490__5prime efeU__5prime 0 1076614 1076811 1 54 0.015151515151515152 198 3 "1076811_1077641" +BW25113_4490__3prime efeU__3prime 0 1077642 1077839 1 315 0.09595959595959595 198 19 "1076811_1077641" +BW25113_1018 efeO 0 1077699 1078826 1 1851 0.08687943262411348 1128 98 "inactive ferrous ion transporter EfeUOB" +BW25113_1018__5prime efeO__5prime 0 1077501 1077698 1 432 0.09090909090909091 198 18 "inactive ferrous ion transporter EfeUOB" +BW25113_1018__3prime efeO__3prime 0 1078827 1079024 1 696 0.12121212121212122 198 24 "inactive ferrous ion transporter EfeUOB" +BW25113_1019 efeB 0 1078832 1080103 1 2894 0.0959119496855346 1272 122 "deferrrochelatase and periplasmic" +BW25113_1019__5prime efeB__5prime 0 1078634 1078831 1 356 0.10101010101010101 198 20 "deferrrochelatase and periplasmic" +BW25113_1019__3prime efeB__3prime 0 1080104 1080301 1 191 0.045454545454545456 198 9 "deferrrochelatase and periplasmic" +1080137_1080223 1080137_1080223 0 1080138 1080223 1 50 0.05813953488372093 86 5 "1080137_1080223" +1080137_1080223__5prime 1080137_1080223__5prime 0 1079940 1080137 1 179 0.06060606060606061 198 12 "1080137_1080223" +1080137_1080223__3prime 1080137_1080223__3prime 0 1080224 1080421 1 197 0.025252525252525252 198 5 "1080137_1080223" +BW25113_1020 phoH 0 1080448 1081512 1 2909 0.13051643192488263 1065 139 "ATP-binding protein; putative PhoH family P-loop ATPase" +BW25113_1020__5prime phoH__5prime 0 1080250 1080447 1 94 0.015151515151515152 198 3 "ATP-binding protein; putative PhoH family P-loop ATPase" +BW25113_1020__3prime phoH__3prime 0 1081513 1081710 1 2227 0.3383838383838384 198 67 "ATP-binding protein; putative PhoH family P-loop ATPase" +BW25113_1021 pgaD 0 1081562 1081975 -1 3363 0.25120772946859904 414 104 "biofilm PGA synthase PgaCD and regulatory subunit; c-di-GMP-stimulated activity and dimerization" +BW25113_1021__5prime pgaD__5prime 0 1081976 1082173 -1 1446 0.3333333333333333 198 66 "biofilm PGA synthase PgaCD and regulatory subunit; c-di-GMP-stimulated activity and dimerization" +BW25113_1021__3prime pgaD__3prime 0 1081364 1081561 -1 691 0.1919191919191919 198 38 "biofilm PGA synthase PgaCD and regulatory subunit; c-di-GMP-stimulated activity and dimerization" +BW25113_1022 pgaC 0 1081977 1083302 -1 17671 0.30618401206636503 1326 406 "biofilm PGA synthase PgaCD and catalytic subunit; poly-beta-1 and 6-N-acetyl-D-glucosamine synthase; c-di-GMP-stimulated activity and dimerization" +BW25113_1022__5prime pgaC__5prime 0 1083303 1083500 -1 576 0.18686868686868688 198 37 "biofilm PGA synthase PgaCD and catalytic subunit; poly-beta-1 and 6-N-acetyl-D-glucosamine synthase; c-di-GMP-stimulated activity and dimerization" +BW25113_1022__3prime pgaC__3prime 0 1081779 1081976 -1 789 0.16161616161616163 198 32 "biofilm PGA synthase PgaCD and catalytic subunit; poly-beta-1 and 6-N-acetyl-D-glucosamine synthase; c-di-GMP-stimulated activity and dimerization" +BW25113_1023 pgaB 0 1083295 1085313 -1 13032 0.2060425953442298 2019 416 "poly-beta-1 and 6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein" +BW25113_1023__5prime pgaB__5prime 0 1085314 1085511 -1 517 0.11616161616161616 198 23 "poly-beta-1 and 6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein" +BW25113_1023__3prime pgaB__3prime 0 1083097 1083294 -1 4648 0.3484848484848485 198 69 "poly-beta-1 and 6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein" +BW25113_1024 pgaA 0 1085322 1087745 -1 25120 0.2367986798679868 2424 574 "biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 and 6-N-acetyl-D-glucosamine export protein" +BW25113_1024__5prime pgaA__5prime 0 1087746 1087943 -1 567 0.1414141414141414 198 28 "biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 and 6-N-acetyl-D-glucosamine export protein" +BW25113_1024__3prime pgaA__3prime 0 1085124 1085321 -1 769 0.13636363636363635 198 27 "biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 and 6-N-acetyl-D-glucosamine export protein" +BW25113_1025 ycdT 0 1088332 1089690 1 6188 0.1758646063281825 1359 239 "diguanylate cyclase and membrane-anchored" +BW25113_1025__5prime ycdT__5prime 0 1088134 1088331 1 1140 0.20202020202020202 198 40 "diguanylate cyclase and membrane-anchored" +BW25113_1025__3prime ycdT__3prime 0 1089691 1089888 1 1444 0.29797979797979796 198 59 "diguanylate cyclase and membrane-anchored" +1089700_1090958 1089700_1090958 0 1089701 1090958 -1 4805 0.212241653418124 1258 267 "1089700_1090958" +1089700_1090958__5prime 1089700_1090958__5prime 0 1090959 1091156 -1 1051 0.2727272727272727 198 54 "1089700_1090958" +1089700_1090958__3prime 1089700_1090958__3prime 0 1089503 1089700 -1 1447 0.21717171717171718 198 43 "1089700_1090958" +BW25113_1026 insF1 0 1089731 1090597 -1 3956 0.2364475201845444 867 205 "IS3 transposase B" +BW25113_1026__5prime insF1__5prime 0 1090598 1090795 -1 260 0.1111111111111111 198 22 "IS3 transposase B" +BW25113_1026__3prime insF1__3prime 0 1089533 1089730 -1 1484 0.2676767676767677 198 53 "IS3 transposase B" +BW25113_1027 insE1 0 1090594 1090893 -1 514 0.11666666666666667 300 35 "IS3 transposase A" +BW25113_1027__5prime insE1__5prime 0 1090894 1091091 -1 959 0.2828282828282828 198 56 "IS3 transposase A" +BW25113_1027__3prime insE1__3prime 0 1090396 1090593 -1 514 0.16666666666666666 198 33 "IS3 transposase A" +BW25113_1028 ymdE 0 1090961 1091302 1 1880 0.260233918128655 342 89 "1090960_1091302" +BW25113_1028__5prime ymdE__5prime 0 1090763 1090960 1 529 0.1717171717171717 198 34 "1090960_1091302" +BW25113_1028__3prime ymdE__3prime 0 1091303 1091500 1 521 0.13131313131313133 198 26 "1090960_1091302" +BW25113_1029 ycdU 0 1091299 1092285 1 6369 0.20871327254305977 987 206 "putative inner membrane protein" +BW25113_1029__5prime ycdU__5prime 0 1091101 1091298 1 1084 0.23232323232323232 198 46 "putative inner membrane protein" +BW25113_1029__3prime ycdU__3prime 0 1092286 1092483 1 1522 0.25757575757575757 198 51 "putative inner membrane protein" +BW25113_1032 serX 0 1093021 1093108 -1 155 0.1590909090909091 88 14 "tRNA-Ser" +BW25113_1032__5prime serX__5prime 0 1093109 1093306 -1 177 0.04040404040404041 198 8 "tRNA-Ser" +BW25113_1032__3prime serX__3prime 0 1092823 1093020 -1 258 0.12626262626262627 198 25 "tRNA-Ser" +BW25113_1033 ghrA 0 1093342 1094280 1 1330 0.07348242811501597 939 69 "glyoxylate/hydroxypyruvate reductase A" +BW25113_1033__5prime ghrA__5prime 0 1093144 1093341 1 121 0.03535353535353535 198 7 "glyoxylate/hydroxypyruvate reductase A" +BW25113_1033__3prime ghrA__3prime 0 1094281 1094478 1 397 0.14646464646464646 198 29 "glyoxylate/hydroxypyruvate reductase A" +BW25113_1034 ycdX 0 1094335 1095072 1 1339 0.09620596205962059 738 71 "alkaline phosphatase" +BW25113_1034__5prime ycdX__5prime 0 1094137 1094334 1 597 0.15656565656565657 198 31 "alkaline phosphatase" +BW25113_1034__3prime ycdX__3prime 0 1095073 1095270 1 382 0.09595959595959595 198 19 "alkaline phosphatase" +BW25113_1035 ycdY 0 1095096 1095650 1 1121 0.12252252252252252 555 68 "redox enzyme maturation protein (REMP) chaperone for YcdX" +BW25113_1035__5prime ycdY__5prime 0 1094898 1095095 1 504 0.06565656565656566 198 13 "redox enzyme maturation protein (REMP) chaperone for YcdX" +BW25113_1035__3prime ycdY__3prime 0 1095651 1095848 1 226 0.09595959595959595 198 19 "redox enzyme maturation protein (REMP) chaperone for YcdX" +BW25113_1036 ycdZ 0 1095752 1096243 1 1031 0.1016260162601626 492 50 "DUF1097 family inner membrane protein" +BW25113_1036__5prime ycdZ__5prime 0 1095554 1095751 1 303 0.10606060606060606 198 21 "DUF1097 family inner membrane protein" +BW25113_1036__3prime ycdZ__3prime 0 1096244 1096441 1 218 0.06060606060606061 198 12 "DUF1097 family inner membrane protein" +1096276_1096295 1096276_1096295 0 1096277 1096295 1 0 0.0 19 0 "1096276_1096295" +1096276_1096295__5prime 1096276_1096295__5prime 0 1096079 1096276 1 529 0.1414141414141414 198 28 "1096276_1096295" +1096276_1096295__3prime 1096276_1096295__3prime 0 1096296 1096493 1 433 0.09595959595959595 198 19 "1096276_1096295" +BW25113_1037 csgG 0 1096307 1097140 -1 2628 0.1474820143884892 834 123 "curli production assembly/transport outer membrane lipoprotein" +BW25113_1037__5prime csgG__5prime 0 1097141 1097338 -1 785 0.1717171717171717 198 34 "curli production assembly/transport outer membrane lipoprotein" +BW25113_1037__3prime csgG__3prime 0 1096109 1096306 -1 522 0.13636363636363635 198 27 "curli production assembly/transport outer membrane lipoprotein" +BW25113_1038 csgF 0 1097167 1097583 -1 2046 0.19904076738609114 417 83 "curli nucleation outer membrane protein" +BW25113_1038__5prime csgF__5prime 0 1097584 1097781 -1 958 0.14646464646464646 198 29 "curli nucleation outer membrane protein" +BW25113_1038__3prime csgF__3prime 0 1096969 1097166 -1 845 0.21212121212121213 198 42 "curli nucleation outer membrane protein" +BW25113_1039 csgE 0 1097608 1097997 -1 2141 0.17435897435897435 390 68 "curlin secretion specificity factor" +BW25113_1039__5prime csgE__5prime 0 1097998 1098195 -1 336 0.09595959595959595 198 19 "curlin secretion specificity factor" +BW25113_1039__3prime csgE__3prime 0 1097410 1097607 -1 883 0.1919191919191919 198 38 "curlin secretion specificity factor" +BW25113_1040 csgD 0 1098002 1098652 -1 3908 0.21351766513056836 651 139 "csgBAC operon transcriptional regulator" +BW25113_1040__5prime csgD__5prime 0 1098653 1098850 -1 1109 0.18181818181818182 198 36 "csgBAC operon transcriptional regulator" +BW25113_1040__3prime csgD__3prime 0 1097804 1098001 -1 747 0.16666666666666666 198 33 "csgBAC operon transcriptional regulator" +BW25113_1041 csgB 0 1099407 1099862 1 2688 0.23026315789473684 456 105 "curlin nucleator protein and minor subunit in curli complex" +BW25113_1041__5prime csgB__5prime 0 1099209 1099406 1 424 0.09595959595959595 198 19 "curlin nucleator protein and minor subunit in curli complex" +BW25113_1041__3prime csgB__3prime 0 1099863 1100060 1 1327 0.21212121212121213 198 42 "curlin nucleator protein and minor subunit in curli complex" +BW25113_1042 csgA 0 1099903 1100358 1 4582 0.2916666666666667 456 133 "curlin subunit and amyloid curli fibers and cryptic" +BW25113_1042__5prime csgA__5prime 0 1099705 1099902 1 793 0.12626262626262627 198 25 "curlin subunit and amyloid curli fibers and cryptic" +BW25113_1042__3prime csgA__3prime 0 1100359 1100556 1 1289 0.2828282828282828 198 56 "curlin subunit and amyloid curli fibers and cryptic" +BW25113_1043 csgC 0 1100417 1100749 1 1995 0.2552552552552553 333 85 "curli assembly protein" +BW25113_1043__5prime csgC__5prime 0 1100219 1100416 1 2033 0.2777777777777778 198 55 "curli assembly protein" +BW25113_1043__3prime csgC__3prime 0 1100750 1100947 1 1429 0.25252525252525254 198 50 "curli assembly protein" +BW25113_1044 ymdA 0 1100870 1101181 1 2968 0.19230769230769232 312 60 "uncharacterized protein" +BW25113_1044__5prime ymdA__5prime 0 1100672 1100869 1 1206 0.23232323232323232 198 46 "uncharacterized protein" +BW25113_1044__3prime ymdA__3prime 0 1101182 1101379 1 409 0.08080808080808081 198 16 "uncharacterized protein" +BW25113_1045 ymdB 0 1101276 1101809 1 1529 0.12734082397003746 534 68 "O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit" +BW25113_1045__5prime ymdB__5prime 0 1101078 1101275 1 606 0.0707070707070707 198 14 "O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit" +BW25113_1045__3prime ymdB__3prime 0 1101810 1102007 1 317 0.07575757575757576 198 15 "O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit" +BW25113_1046 clsC 0 1101811 1103232 1 4928 0.12025316455696203 1422 171 "stationary phase cardiolipin synthase 3" +BW25113_1046__5prime clsC__5prime 0 1101613 1101810 1 614 0.12626262626262627 198 25 "stationary phase cardiolipin synthase 3" +BW25113_1046__3prime clsC__3prime 0 1103233 1103430 1 1310 0.23737373737373738 198 47 "stationary phase cardiolipin synthase 3" +BW25113_1047 opgC 0 1103240 1104397 -1 8659 0.22452504317789293 1158 260 "osmoregulated periplasmic glucan succinylation membrane protein" +BW25113_1047__5prime opgC__5prime 0 1104398 1104595 -1 1596 0.25252525252525254 198 50 "osmoregulated periplasmic glucan succinylation membrane protein" +BW25113_1047__3prime opgC__3prime 0 1103042 1103239 -1 2193 0.30303030303030304 198 60 "osmoregulated periplasmic glucan succinylation membrane protein" +BW25113_1048 opgG 0 1104791 1106326 1 2483 0.08268229166666667 1536 127 "osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein" +BW25113_1048__5prime opgG__5prime 0 1104593 1104790 1 751 0.12121212121212122 198 24 "osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein" +BW25113_1048__3prime opgG__3prime 0 1106327 1106524 1 331 0.12626262626262627 198 25 "osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein" +BW25113_1049 opgH 0 1106319 1108862 1 4779 0.09669811320754718 2544 246 "membrane glycosyltransferase; nutrient-dependent cell size regulator and FtsZ assembly antagonist" +BW25113_1049__5prime opgH__5prime 0 1106121 1106318 1 300 0.10606060606060606 198 21 "membrane glycosyltransferase; nutrient-dependent cell size regulator and FtsZ assembly antagonist" +BW25113_1049__3prime opgH__3prime 0 1108863 1109060 1 321 0.06565656565656566 198 13 "membrane glycosyltransferase; nutrient-dependent cell size regulator and FtsZ assembly antagonist" +1108872_1108970 1108872_1108970 0 1108873 1108970 1 259 0.08163265306122448 98 8 "1108872_1108970" +1108872_1108970__5prime 1108872_1108970__5prime 0 1108675 1108872 1 341 0.08585858585858586 198 17 "1108872_1108970" +1108872_1108970__3prime 1108872_1108970__3prime 0 1108971 1109168 1 530 0.1111111111111111 198 22 "1108872_1108970" +BW25113_1050 yceK 0 1109035 1109262 1 587 0.10526315789473684 228 24 "outer membrane integrity lipoprotein" +BW25113_1050__5prime yceK__5prime 0 1108837 1109034 1 264 0.045454545454545456 198 9 "outer membrane integrity lipoprotein" +BW25113_1050__3prime yceK__3prime 0 1109263 1109460 1 264 0.09090909090909091 198 18 "outer membrane integrity lipoprotein" +BW25113_1051 msyB 0 1109263 1109637 -1 273 0.050666666666666665 375 19 "multicopy suppressor of secY and secA" +BW25113_1051__5prime msyB__5prime 0 1109638 1109835 -1 207 0.09090909090909091 198 18 "multicopy suppressor of secY and secA" +BW25113_1051__3prime msyB__3prime 0 1109065 1109262 -1 525 0.09595959595959595 198 19 "multicopy suppressor of secY and secA" +BW25113_1053 mdtG 0 1109720 1110946 -1 1798 0.08638956805215973 1227 106 "putative drug efflux system protein" +BW25113_1053__5prime mdtG__5prime 0 1110947 1111144 -1 78 0.025252525252525252 198 5 "putative drug efflux system protein" +BW25113_1053__3prime mdtG__3prime 0 1109522 1109719 -1 43 0.020202020202020204 198 4 "putative drug efflux system protein" +1111081_1111108 1111081_1111108 0 1111082 1111108 1 19 0.07407407407407407 27 2 "1111081_1111108" +1111081_1111108__5prime 1111081_1111108__5prime 0 1110884 1111081 1 132 0.030303030303030304 198 6 "1111081_1111108" +1111081_1111108__3prime 1111081_1111108__3prime 0 1111109 1111306 1 0 0.0 198 0 "1111081_1111108" +BW25113_1054 lpxL 0 1111118 1112038 -1 0 0.0 921 0 "lauryl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_1054__5prime lpxL__5prime 0 1112039 1112236 -1 0 0.0 198 0 "lauryl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_1054__3prime lpxL__3prime 0 1110920 1111117 -1 78 0.025252525252525252 198 5 "lauryl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_1055 yceA 0 1112263 1113315 1 3296 0.1120607787274454 1053 118 "putative rhodanese-related sulfurtransferase" +BW25113_1055__5prime yceA__5prime 0 1112065 1112262 1 282 0.04040404040404041 198 8 "putative rhodanese-related sulfurtransferase" +BW25113_1055__3prime yceA__3prime 0 1113316 1113513 1 1105 0.24242424242424243 198 48 "putative rhodanese-related sulfurtransferase" +1113323_1113344 1113323_1113344 0 1113324 1113344 1 369 0.6666666666666666 21 14 "1113323_1113344" +1113323_1113344__5prime 1113323_1113344__5prime 0 1113126 1113323 1 1494 0.19696969696969696 198 39 "1113323_1113344" +1113323_1113344__3prime 1113323_1113344__3prime 0 1113345 1113542 1 1055 0.20707070707070707 198 41 "1113323_1113344" +BW25113_1056 yceI 0 1113357 1113932 -1 3368 0.2048611111111111 576 118 "secreted protein" +BW25113_1056__5prime yceI__5prime 0 1113933 1114130 -1 750 0.13636363636363635 198 27 "secreted protein" +BW25113_1056__3prime yceI__3prime 0 1113159 1113356 -1 1917 0.2727272727272727 198 54 "secreted protein" +BW25113_1057 yceJ 0 1113936 1114502 -1 4710 0.2821869488536155 567 160 "putative cytochrome b561" +BW25113_1057__5prime yceJ__5prime 0 1114503 1114700 -1 632 0.14646464646464646 198 29 "putative cytochrome b561" +BW25113_1057__3prime yceJ__3prime 0 1113738 1113935 -1 922 0.1919191919191919 198 38 "putative cytochrome b561" +BW25113_1058 yceO 0 1114763 1114903 -1 369 0.16312056737588654 141 23 "uncharacterized protein" +BW25113_1058__5prime yceO__5prime 0 1114904 1115101 -1 1922 0.21717171717171718 198 43 "uncharacterized protein" +BW25113_1058__3prime yceO__3prime 0 1114565 1114762 -1 669 0.13131313131313133 198 26 "uncharacterized protein" +BW25113_1059 solA 0 1114924 1116042 -1 6119 0.1572832886505809 1119 176 "N-methyltryptophan oxidase and FAD-binding" +BW25113_1059__5prime solA__5prime 0 1116043 1116240 -1 795 0.14646464646464646 198 29 "N-methyltryptophan oxidase and FAD-binding" +BW25113_1059__3prime solA__3prime 0 1114726 1114923 -1 625 0.14646464646464646 198 29 "N-methyltryptophan oxidase and FAD-binding" +BW25113_1060 bssS 0 1116157 1116411 -1 2448 0.28627450980392155 255 73 "biofilm regulator" +BW25113_1060__5prime bssS__5prime 0 1116412 1116609 -1 78 0.020202020202020204 198 4 "biofilm regulator" +BW25113_1060__3prime bssS__3prime 0 1115959 1116156 -1 983 0.20202020202020202 198 40 "biofilm regulator" +BW25113_1061 dinI 0 1116698 1116943 -1 667 0.09349593495934959 246 23 "DNA damage-inducible protein I" +BW25113_1061__5prime dinI__5prime 0 1116944 1117141 -1 107 0.03535353535353535 198 7 "DNA damage-inducible protein I" +BW25113_1061__3prime dinI__3prime 0 1116500 1116697 -1 0 0.0 198 0 "DNA damage-inducible protein I" +BW25113_1062 pyrC 0 1117017 1118063 -1 1402 0.06017191977077364 1047 63 "dihydro-orotase" +BW25113_1062__5prime pyrC__5prime 0 1118064 1118261 -1 125 0.04040404040404041 198 8 "dihydro-orotase" +BW25113_1062__3prime pyrC__3prime 0 1116819 1117016 -1 533 0.0707070707070707 198 14 "dihydro-orotase" +BW25113_1063 yceB 0 1118169 1118729 -1 990 0.11051693404634581 561 62 "lipoprotein and DUF1439 family" +BW25113_1063__5prime yceB__5prime 0 1118730 1118927 -1 637 0.12626262626262627 198 25 "lipoprotein and DUF1439 family" +BW25113_1063__3prime yceB__3prime 0 1117971 1118168 -1 146 0.045454545454545456 198 9 "lipoprotein and DUF1439 family" +BW25113_1064 grxB 0 1118863 1119510 -1 996 0.10185185185185185 648 66 "glutaredoxin 2 (Grx2)" +BW25113_1064__5prime grxB__5prime 0 1119511 1119708 -1 398 0.0707070707070707 198 14 "glutaredoxin 2 (Grx2)" +BW25113_1064__3prime grxB__3prime 0 1118665 1118862 -1 758 0.14646464646464646 198 29 "glutaredoxin 2 (Grx2)" +BW25113_1065 mdtH 0 1119574 1120782 -1 3203 0.10587262200165426 1209 128 "multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin" +BW25113_1065__5prime mdtH__5prime 0 1120783 1120980 -1 266 0.1111111111111111 198 22 "multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin" +BW25113_1065__3prime mdtH__3prime 0 1119376 1119573 -1 280 0.08080808080808081 198 16 "multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin" +BW25113_1066 rimJ 0 1121018 1121602 1 2357 0.1675213675213675 585 98 "ribosomal-protein-S5-alanine N-acetyltransferase" +BW25113_1066__5prime rimJ__5prime 0 1120820 1121017 1 421 0.12626262626262627 198 25 "ribosomal-protein-S5-alanine N-acetyltransferase" +BW25113_1066__3prime rimJ__3prime 0 1121603 1121800 1 623 0.13636363636363635 198 27 "ribosomal-protein-S5-alanine N-acetyltransferase" +BW25113_1067 yceH 0 1121613 1122260 1 1418 0.08333333333333333 648 54 "UPF0502 family protein" +BW25113_1067__5prime yceH__5prime 0 1121415 1121612 1 909 0.21717171717171718 198 43 "UPF0502 family protein" +BW25113_1067__3prime yceH__3prime 0 1122261 1122458 1 42 0.020202020202020204 198 4 "UPF0502 family protein" +BW25113_1068 yceM 0 1122262 1123185 1 1512 0.07034632034632035 924 65 "putative oxidoreductase" +BW25113_1068__5prime yceM__5prime 0 1122064 1122261 1 312 0.05555555555555555 198 11 "putative oxidoreductase" +BW25113_1068__3prime yceM__3prime 0 1123186 1123383 1 63 0.025252525252525252 198 5 "putative oxidoreductase" +BW25113_1069 murJ 0 1123295 1124830 1 211 0.00390625 1536 6 "putative peptidoglycan lipid II flippase" +BW25113_1069__5prime murJ__5prime 0 1123097 1123294 1 76 0.030303030303030304 198 6 "putative peptidoglycan lipid II flippase" +BW25113_1069__3prime murJ__3prime 0 1124831 1125028 1 297 0.0707070707070707 198 14 "putative peptidoglycan lipid II flippase" +BW25113_1069 murJ 0 1124034 1124221 1 0 0.0 188 0 "1124033_1124221" +BW25113_1069__5prime murJ__5prime 0 1123836 1124033 1 0 0.0 198 0 "1124033_1124221" +BW25113_1069__3prime murJ__3prime 0 1124222 1124419 1 0 0.0 198 0 "1124033_1124221" +BW25113_1070 flgN 0 1124870 1125286 -1 751 0.05755395683453238 417 24 "export chaperone for FlgK and FlgL" +BW25113_1070__5prime flgN__5prime 0 1125287 1125484 -1 281 0.04040404040404041 198 8 "export chaperone for FlgK and FlgL" +BW25113_1070__3prime flgN__3prime 0 1124672 1124869 -1 243 0.03535353535353535 198 7 "export chaperone for FlgK and FlgL" +BW25113_1071 flgM 0 1125291 1125584 -1 427 0.05782312925170068 294 17 "anti-sigma factor for FliA (sigma 28)" +BW25113_1071__5prime flgM__5prime 0 1125585 1125782 -1 91 0.050505050505050504 198 10 "anti-sigma factor for FliA (sigma 28)" +BW25113_1071__3prime flgM__3prime 0 1125093 1125290 -1 486 0.05555555555555555 198 11 "anti-sigma factor for FliA (sigma 28)" +BW25113_1072 flgA 0 1125660 1126319 -1 1035 0.08333333333333333 660 55 "assembly protein for flagellar basal-body periplasmic P ring" +BW25113_1072__5prime flgA__5prime 0 1126320 1126517 -1 186 0.08585858585858586 198 17 "assembly protein for flagellar basal-body periplasmic P ring" +BW25113_1072__3prime flgA__3prime 0 1125462 1125659 -1 213 0.07575757575757576 198 15 "assembly protein for flagellar basal-body periplasmic P ring" +BW25113_1073 flgB 0 1126474 1126890 1 685 0.08633093525179857 417 36 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1073__5prime flgB__5prime 0 1126276 1126473 1 357 0.12121212121212122 198 24 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1073__3prime flgB__3prime 0 1126891 1127088 1 457 0.08585858585858586 198 17 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1074 flgC 0 1126894 1127298 1 1116 0.11358024691358025 405 46 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1074__5prime flgC__5prime 0 1126696 1126893 1 446 0.1111111111111111 198 22 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1074__3prime flgC__3prime 0 1127299 1127496 1 408 0.10101010101010101 198 20 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1075 flgD 0 1127310 1128005 1 1713 0.10919540229885058 696 76 "flagellar hook assembly protein" +BW25113_1075__5prime flgD__5prime 0 1127112 1127309 1 765 0.15656565656565657 198 31 "flagellar hook assembly protein" +BW25113_1075__3prime flgD__3prime 0 1128006 1128203 1 217 0.0707070707070707 198 14 "flagellar hook assembly protein" +BW25113_1076 flgE 0 1128030 1129238 1 3281 0.10421836228287841 1209 126 "flagellar hook protein" +BW25113_1076__5prime flgE__5prime 0 1127832 1128029 1 489 0.1111111111111111 198 22 "flagellar hook protein" +BW25113_1076__3prime flgE__3prime 0 1129239 1129436 1 185 0.04040404040404041 198 8 "flagellar hook protein" +BW25113_1077 flgF 0 1129258 1130013 1 1446 0.06878306878306878 756 52 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1077__5prime flgF__5prime 0 1129060 1129257 1 514 0.13131313131313133 198 26 "flagellar component of cell-proximal portion of basal-body rod" +BW25113_1077__3prime flgF__3prime 0 1130014 1130211 1 144 0.03535353535353535 198 7 "flagellar component of cell-proximal portion of basal-body rod" +1130041_1130139 1130041_1130139 0 1130042 1130139 1 26 0.030612244897959183 98 3 "1130041_1130139" +1130041_1130139__5prime 1130041_1130139__5prime 0 1129844 1130041 1 390 0.06565656565656566 198 13 "1130041_1130139" +1130041_1130139__3prime 1130041_1130139__3prime 0 1130140 1130337 1 183 0.020202020202020204 198 4 "1130041_1130139" +BW25113_1078 flgG 0 1130185 1130967 1 1245 0.06641123882503193 783 52 "flagellar component of cell-distal portion of basal-body rod" +BW25113_1078__5prime flgG__5prime 0 1129987 1130184 1 144 0.03535353535353535 198 7 "flagellar component of cell-distal portion of basal-body rod" +BW25113_1078__3prime flgG__3prime 0 1130968 1131165 1 376 0.0707070707070707 198 14 "flagellar component of cell-distal portion of basal-body rod" +BW25113_1079 flgH 0 1131020 1131718 1 773 0.05293276108726753 699 37 "flagellar protein of basal-body outer-membrane L ring" +BW25113_1079__5prime flgH__5prime 0 1130822 1131019 1 585 0.10101010101010101 198 20 "flagellar protein of basal-body outer-membrane L ring" +BW25113_1079__3prime flgH__3prime 0 1131719 1131916 1 454 0.10606060606060606 198 21 "flagellar protein of basal-body outer-membrane L ring" +BW25113_1080 flgI 0 1131730 1132827 1 2189 0.10109289617486339 1098 111 "putative flagellar basal body protein" +BW25113_1080__5prime flgI__5prime 0 1131532 1131729 1 144 0.050505050505050504 198 10 "putative flagellar basal body protein" +BW25113_1080__3prime flgI__3prime 0 1132828 1133025 1 381 0.08585858585858586 198 17 "putative flagellar basal body protein" +BW25113_1081 flgJ 0 1132827 1133768 1 1243 0.07218683651804671 942 68 "flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase" +BW25113_1081__5prime flgJ__5prime 0 1132629 1132826 1 431 0.09595959595959595 198 19 "flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase" +BW25113_1081__3prime flgJ__3prime 0 1133769 1133966 1 389 0.06565656565656566 198 13 "flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase" +BW25113_1082 flgK 0 1133834 1135477 1 2358 0.06934306569343066 1644 114 "flagellar hook-filament junction protein 1" +BW25113_1082__5prime flgK__5prime 0 1133636 1133833 1 259 0.05555555555555555 198 11 "flagellar hook-filament junction protein 1" +BW25113_1082__3prime flgK__3prime 0 1135478 1135675 1 414 0.07575757575757576 198 15 "flagellar hook-filament junction protein 1" +BW25113_1083 flgL 0 1135489 1136442 1 1323 0.07127882599580712 954 68 "flagellar hook-filament junction protein" +BW25113_1083__5prime flgL__5prime 0 1135291 1135488 1 471 0.13131313131313133 198 26 "flagellar hook-filament junction protein" +BW25113_1083__3prime flgL__3prime 0 1136443 1136640 1 194 0.030303030303030304 198 6 "flagellar hook-filament junction protein" +BW25113_1084 rne 0 1136638 1139823 -1 2118 0.026679221594475833 3186 85 "fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein" +BW25113_1084__5prime rne__5prime 0 1139824 1140021 -1 215 0.030303030303030304 198 6 "fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein" +BW25113_1084__3prime rne__3prime 0 1136440 1136637 -1 194 0.030303030303030304 198 6 "fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein" +BW25113_1085 yceQ 0 1139958 1140278 1 344 0.04984423676012461 321 16 "uncharacterized protein" +BW25113_1085__5prime yceQ__5prime 0 1139760 1139957 1 215 0.030303030303030304 198 6 "uncharacterized protein" +BW25113_1085__3prime yceQ__3prime 0 1140279 1140476 1 211 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_1086 rluC 0 1140396 1141355 1 2418 0.09479166666666666 960 91 "23S rRNA pseudouridine(955 and 2504 and 2580) synthase" +BW25113_1086__5prime rluC__5prime 0 1140198 1140395 1 289 0.08585858585858586 198 17 "23S rRNA pseudouridine(955 and 2504 and 2580) synthase" +BW25113_1086__3prime rluC__3prime 0 1141356 1141553 1 510 0.09595959595959595 198 19 "23S rRNA pseudouridine(955 and 2504 and 2580) synthase" +1141383_1141458 1141383_1141458 0 1141384 1141458 1 161 0.06666666666666667 75 5 "1141383_1141458" +1141383_1141458__5prime 1141383_1141458__5prime 0 1141186 1141383 1 706 0.1414141414141414 198 28 "1141383_1141458" +1141383_1141458__3prime 1141383_1141458__3prime 0 1141459 1141656 1 756 0.11616161616161616 198 23 "1141383_1141458" +BW25113_1087 yceF 0 1141467 1142051 -1 1556 0.10256410256410256 585 60 "Maf-like protein" +BW25113_1087__5prime yceF__5prime 0 1142052 1142249 -1 439 0.10101010101010101 198 20 "Maf-like protein" +BW25113_1087__3prime yceF__3prime 0 1141269 1141466 -1 696 0.13131313131313133 198 26 "Maf-like protein" +BW25113_4418 psrD 0 1142045 1142213 1 384 0.09467455621301775 169 16 "novel Novel sRNA and function unknown" +BW25113_4418__5prime psrD__5prime 0 1141847 1142044 1 257 0.045454545454545456 198 9 "novel Novel sRNA and function unknown" +BW25113_4418__3prime psrD__3prime 0 1142214 1142411 1 317 0.07575757575757576 198 15 "novel Novel sRNA and function unknown" +BW25113_1088 yceD 0 1142250 1142771 1 839 0.07088122605363985 522 37 "DUF177 family protein" +BW25113_1088__5prime yceD__5prime 0 1142052 1142249 1 439 0.10101010101010101 198 20 "DUF177 family protein" +BW25113_1088__3prime yceD__3prime 0 1142772 1142969 1 119 0.04040404040404041 198 8 "DUF177 family protein" +BW25113_1089 rpmF 0 1142823 1142996 1 85 0.034482758620689655 174 6 "50S ribosomal subunit protein L32" +BW25113_1089__5prime rpmF__5prime 0 1142625 1142822 1 206 0.050505050505050504 198 10 "50S ribosomal subunit protein L32" +BW25113_1089__3prime rpmF__3prime 0 1142997 1143194 1 244 0.025252525252525252 198 5 "50S ribosomal subunit protein L32" +BW25113_1090 plsX 0 1143077 1144147 1 1195 0.05695611577964519 1071 61 "putative phosphate acyltransferase" +BW25113_1090__5prime plsX__5prime 0 1142879 1143076 1 44 0.010101010101010102 198 2 "putative phosphate acyltransferase" +BW25113_1090__3prime plsX__3prime 0 1144148 1144345 1 212 0.04040404040404041 198 8 "putative phosphate acyltransferase" +BW25113_1091 fabH 0 1144215 1145168 1 48 0.007337526205450734 954 7 "3-oxoacyl-[acyl-carrier-protein] synthase III" +BW25113_1091__5prime fabH__5prime 0 1144017 1144214 1 269 0.06565656565656566 198 13 "3-oxoacyl-[acyl-carrier-protein] synthase III" +BW25113_1091__3prime fabH__3prime 0 1145169 1145366 1 0 0.0 198 0 "3-oxoacyl-[acyl-carrier-protein] synthase III" +BW25113_1092 fabD 0 1145184 1146113 1 11 0.002150537634408602 930 2 "malonyl-CoA-[acyl-carrier-protein] transacylase" +BW25113_1092__5prime fabD__5prime 0 1144986 1145183 1 0 0.0 198 0 "malonyl-CoA-[acyl-carrier-protein] transacylase" +BW25113_1092__3prime fabD__3prime 0 1146114 1146311 1 0 0.0 198 0 "malonyl-CoA-[acyl-carrier-protein] transacylase" +BW25113_1093 fabG 0 1146126 1146860 1 0 0.0 735 0 "3-oxoacyl-[acyl-carrier-protein] reductase" +BW25113_1093__5prime fabG__5prime 0 1145928 1146125 1 11 0.010101010101010102 198 2 "3-oxoacyl-[acyl-carrier-protein] reductase" +BW25113_1093__3prime fabG__3prime 0 1146861 1147058 1 0 0.0 198 0 "3-oxoacyl-[acyl-carrier-protein] reductase" +BW25113_1094 acpP 0 1147071 1147307 1 0 0.0 237 0 "acyl carrier protein (ACP)" +BW25113_1094__5prime acpP__5prime 0 1146873 1147070 1 0 0.0 198 0 "acyl carrier protein (ACP)" +BW25113_1094__3prime acpP__3prime 0 1147308 1147505 1 135 0.04040404040404041 198 8 "acyl carrier protein (ACP)" +BW25113_1095 fabF 0 1147395 1148636 1 2352 0.09581320450885668 1242 119 "3-oxoacyl-[acyl-carrier-protein] synthase II" +BW25113_1095__5prime fabF__5prime 0 1147197 1147394 1 12 0.010101010101010102 198 2 "3-oxoacyl-[acyl-carrier-protein] synthase II" +BW25113_1095__3prime fabF__3prime 0 1148637 1148834 1 271 0.045454545454545456 198 9 "3-oxoacyl-[acyl-carrier-protein] synthase II" +BW25113_1096 pabC 0 1148756 1149565 1 1053 0.07160493827160494 810 58 "4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex" +BW25113_1096__5prime pabC__5prime 0 1148558 1148755 1 426 0.09090909090909091 198 18 "4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex" +BW25113_1096__3prime pabC__3prime 0 1149566 1149763 1 248 0.0707070707070707 198 14 "4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex" +BW25113_1097 yceG 0 1149568 1150590 1 1105 0.0469208211143695 1023 48 "septation protein and ampicillin sensitivity" +BW25113_1097__5prime yceG__5prime 0 1149370 1149567 1 238 0.0707070707070707 198 14 "septation protein and ampicillin sensitivity" +BW25113_1097__3prime yceG__3prime 0 1150591 1150788 1 0 0.0 198 0 "septation protein and ampicillin sensitivity" +BW25113_1098 tmk 0 1150580 1151221 1 19 0.001557632398753894 642 1 "thymidylate kinase" +BW25113_1098__5prime tmk__5prime 0 1150382 1150579 1 57 0.020202020202020204 198 4 "thymidylate kinase" +BW25113_1098__3prime tmk__3prime 0 1151222 1151419 1 0 0.0 198 0 "thymidylate kinase" +BW25113_1099 holB 0 1151218 1152222 1 67 0.009950248756218905 1005 10 "DNA polymerase III and delta prime subunit" +BW25113_1099__5prime holB__5prime 0 1151020 1151217 1 19 0.005050505050505051 198 1 "DNA polymerase III and delta prime subunit" +BW25113_1099__3prime holB__3prime 0 1152223 1152420 1 13 0.010101010101010102 198 2 "DNA polymerase III and delta prime subunit" +BW25113_1100 ycfH 0 1152233 1153030 1 1590 0.09523809523809523 798 76 "putative DNase" +BW25113_1100__5prime ycfH__5prime 0 1152035 1152232 1 67 0.050505050505050504 198 10 "putative DNase" +BW25113_1100__3prime ycfH__3prime 0 1153031 1153228 1 89 0.050505050505050504 198 10 "putative DNase" +BW25113_1101 ptsG 0 1153325 1154758 1 2538 0.08856345885634588 1434 127 "fused glucose-specific PTS enzymes: IIB component/IIC component" +BW25113_1101__5prime ptsG__5prime 0 1153127 1153324 1 155 0.08080808080808081 198 16 "fused glucose-specific PTS enzymes: IIB component/IIC component" +BW25113_1101__3prime ptsG__3prime 0 1154759 1154956 1 275 0.08585858585858586 198 17 "fused glucose-specific PTS enzymes: IIB component/IIC component" +BW25113_1102 fhuE 0 1154818 1157007 -1 4483 0.09360730593607305 2190 205 "ferric-rhodotorulic acid outer membrane transporter" +BW25113_1102__5prime fhuE__5prime 0 1157008 1157205 -1 39 0.020202020202020204 198 4 "ferric-rhodotorulic acid outer membrane transporter" +BW25113_1102__3prime fhuE__3prime 0 1154620 1154817 -1 381 0.09090909090909091 198 18 "ferric-rhodotorulic acid outer membrane transporter" +BW25113_1103 hinT 0 1157341 1157700 1 381 0.05555555555555555 360 20 "purine nucleoside phosphoramidase and dadA activator protein" +BW25113_1103__5prime hinT__5prime 0 1157143 1157340 1 511 0.10101010101010101 198 20 "purine nucleoside phosphoramidase and dadA activator protein" +BW25113_1103__3prime hinT__3prime 0 1157701 1157898 1 71 0.010101010101010102 198 2 "purine nucleoside phosphoramidase and dadA activator protein" +BW25113_1104 ycfL 0 1157703 1158080 1 371 0.0582010582010582 378 22 "uncharacterized protein" +BW25113_1104__5prime ycfL__5prime 0 1157505 1157702 1 201 0.050505050505050504 198 10 "uncharacterized protein" +BW25113_1104__3prime ycfL__3prime 0 1158081 1158278 1 255 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_1105 lpoB 0 1158094 1158735 1 741 0.06074766355140187 642 39 "OM lipoprotein stimulator of MrcB transpeptidase" +BW25113_1105__5prime lpoB__5prime 0 1157896 1158093 1 326 0.1111111111111111 198 22 "OM lipoprotein stimulator of MrcB transpeptidase" +BW25113_1105__3prime lpoB__3prime 0 1158736 1158933 1 700 0.14646464646464646 198 29 "OM lipoprotein stimulator of MrcB transpeptidase" +BW25113_1106 thiK 0 1158716 1159540 1 1410 0.07393939393939394 825 61 "thiamine kinase" +BW25113_1106__5prime thiK__5prime 0 1158518 1158715 1 210 0.06060606060606061 198 12 "thiamine kinase" +BW25113_1106__3prime thiK__3prime 0 1159541 1159738 1 463 0.05555555555555555 198 11 "thiamine kinase" +BW25113_1107 nagZ 0 1159551 1160576 1 1179 0.0594541910331384 1026 61 "beta N-acetyl-glucosaminidase" +BW25113_1107__5prime nagZ__5prime 0 1159353 1159550 1 185 0.025252525252525252 198 5 "beta N-acetyl-glucosaminidase" +BW25113_1107__3prime nagZ__3prime 0 1160577 1160774 1 446 0.045454545454545456 198 9 "beta N-acetyl-glucosaminidase" +BW25113_1108 ycfP 0 1160599 1161141 1 659 0.040515653775322284 543 22 "putative UPF0227 family esterase" +BW25113_1108__5prime ycfP__5prime 0 1160401 1160598 1 121 0.045454545454545456 198 9 "putative UPF0227 family esterase" +BW25113_1108__3prime ycfP__3prime 0 1161142 1161339 1 418 0.09595959595959595 198 19 "putative UPF0227 family esterase" +1161194_1161269 1161194_1161269 0 1161195 1161269 1 115 0.06666666666666667 75 5 "1161194_1161269" +1161194_1161269__5prime 1161194_1161269__5prime 0 1160997 1161194 1 191 0.06565656565656566 198 13 "1161194_1161269" +1161194_1161269__3prime 1161194_1161269__3prime 0 1161270 1161467 1 227 0.045454545454545456 198 9 "1161194_1161269" +BW25113_1109 ndh 0 1161541 1162845 1 1513 0.06666666666666667 1305 87 "respiratory NADH dehydrogenase 2/cupric reductase" +BW25113_1109__5prime ndh__5prime 0 1161343 1161540 1 0 0.0 198 0 "respiratory NADH dehydrogenase 2/cupric reductase" +BW25113_1109__3prime ndh__3prime 0 1162846 1163043 1 339 0.050505050505050504 198 10 "respiratory NADH dehydrogenase 2/cupric reductase" +1162857_1162887 1162857_1162887 0 1162858 1162887 1 251 0.13333333333333333 30 4 "1162857_1162887" +1162857_1162887__5prime 1162857_1162887__5prime 0 1162660 1162857 1 286 0.05555555555555555 198 11 "1162857_1162887" +1162857_1162887__3prime 1162857_1162887__3prime 0 1162888 1163085 1 121 0.05555555555555555 198 11 "1162857_1162887" +BW25113_1110 ycfJ 0 1163055 1163594 1 1504 0.13703703703703704 540 74 "uncharacterized protein" +BW25113_1110__5prime ycfJ__5prime 0 1162857 1163054 1 344 0.05555555555555555 198 11 "uncharacterized protein" +BW25113_1110__3prime ycfJ__3prime 0 1163595 1163792 1 282 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_1111 ycfQ 0 1163656 1164288 -1 845 0.06477093206951026 633 41 "repressor for bhsA(ycfR)" +BW25113_1111__5prime ycfQ__5prime 0 1164289 1164486 -1 22 0.010101010101010102 198 2 "repressor for bhsA(ycfR)" +BW25113_1111__3prime ycfQ__3prime 0 1163458 1163655 -1 391 0.10606060606060606 198 21 "repressor for bhsA(ycfR)" +BW25113_1112 bhsA 0 1164529 1164786 1 315 0.06976744186046512 258 18 "biofilm and cell surface and signaling protein" +BW25113_1112__5prime bhsA__5prime 0 1164331 1164528 1 49 0.020202020202020204 198 4 "biofilm and cell surface and signaling protein" +BW25113_1112__3prime bhsA__3prime 0 1164787 1164984 1 260 0.09595959595959595 198 19 "biofilm and cell surface and signaling protein" +BW25113_1113 ldtC 0 1164868 1165830 -1 1455 0.07995846313603323 963 77 "L and D-transpeptidase linking Lpp to murein" +BW25113_1113__5prime ldtC__5prime 0 1165831 1166028 -1 178 0.05555555555555555 198 11 "L and D-transpeptidase linking Lpp to murein" +BW25113_1113__3prime ldtC__3prime 0 1164670 1164867 -1 237 0.08080808080808081 198 16 "L and D-transpeptidase linking Lpp to murein" +BW25113_1114 mfd 0 1165974 1169420 -1 4899 0.05976211198143313 3447 206 "transcription-repair coupling factor" +BW25113_1114__5prime mfd__5prime 0 1169421 1169618 -1 193 0.06060606060606061 198 12 "transcription-repair coupling factor" +BW25113_1114__3prime mfd__3prime 0 1165776 1165973 -1 154 0.050505050505050504 198 10 "transcription-repair coupling factor" +BW25113_1115 ycfT 0 1169548 1170621 -1 2345 0.09404096834264432 1074 101 "inner membrane protein" +BW25113_1115__5prime ycfT__5prime 0 1170622 1170819 -1 290 0.05555555555555555 198 11 "inner membrane protein" +BW25113_1115__3prime ycfT__3prime 0 1169350 1169547 -1 543 0.12626262626262627 198 25 "inner membrane protein" +BW25113_1116 lolC 0 1170883 1172082 1 0 0.0 1200 0 "lipoprotein-releasing system transmembrane protein" +BW25113_1116__5prime lolC__5prime 0 1170685 1170882 1 119 0.030303030303030304 198 6 "lipoprotein-releasing system transmembrane protein" +BW25113_1116__3prime lolC__3prime 0 1172083 1172280 1 0 0.0 198 0 "lipoprotein-releasing system transmembrane protein" +BW25113_1117 lolD 0 1172075 1172776 1 172 0.004273504273504274 702 3 "outer membrane-specific lipoprotein transporter subunit" +BW25113_1117__5prime lolD__5prime 0 1171877 1172074 1 0 0.0 198 0 "outer membrane-specific lipoprotein transporter subunit" +BW25113_1117__3prime lolD__3prime 0 1172777 1172974 1 0 0.0 198 0 "outer membrane-specific lipoprotein transporter subunit" +BW25113_1118 lolE 0 1172776 1174020 1 19 0.0024096385542168677 1245 3 "lipoprotein-releasing system transmembrane protein" +BW25113_1118__5prime lolE__5prime 0 1172578 1172775 1 172 0.015151515151515152 198 3 "lipoprotein-releasing system transmembrane protein" +BW25113_1118__3prime lolE__3prime 0 1174021 1174218 1 437 0.07575757575757576 198 15 "lipoprotein-releasing system transmembrane protein" +BW25113_1119 nagK 0 1174049 1174960 1 1517 0.0581140350877193 912 53 "N-acetyl-D-glucosamine kinase" +BW25113_1119__5prime nagK__5prime 0 1173851 1174048 1 19 0.015151515151515152 198 3 "N-acetyl-D-glucosamine kinase" +BW25113_1119__3prime nagK__3prime 0 1174961 1175158 1 154 0.045454545454545456 198 9 "N-acetyl-D-glucosamine kinase" +BW25113_1120 cobB 0 1175087 1175815 1 1404 0.07681755829903979 729 56 "deacetylase of acs and cheY and chemotaxis regulator" +BW25113_1120__5prime cobB__5prime 0 1174889 1175086 1 185 0.06060606060606061 198 12 "deacetylase of acs and cheY and chemotaxis regulator" +BW25113_1120__3prime cobB__3prime 0 1175816 1176013 1 1306 0.23737373737373738 198 47 "deacetylase of acs and cheY and chemotaxis regulator" +1175809_1175905 1175809_1175905 0 1175810 1175905 1 620 0.2708333333333333 96 26 "1175809_1175905" +1175809_1175905__5prime 1175809_1175905__5prime 0 1175612 1175809 1 912 0.17676767676767677 198 35 "1175809_1175905" +1175809_1175905__3prime 1175809_1175905__3prime 0 1175906 1176103 1 934 0.18686868686868688 198 37 "1175809_1175905" +BW25113_1121 ycfZ 0 1175935 1176723 -1 4671 0.23193916349809887 789 183 "inner membrane protein" +BW25113_1121__5prime ycfZ__5prime 0 1176724 1176921 -1 152 0.06565656565656566 198 13 "inner membrane protein" +BW25113_1121__3prime ycfZ__3prime 0 1175737 1175934 -1 1284 0.2474747474747475 198 49 "inner membrane protein" +BW25113_1122 ymfA 0 1176720 1177181 -1 3596 0.19480519480519481 462 90 "DUF3592 family inner membrane protein" +BW25113_1122__5prime ymfA__5prime 0 1177182 1177379 -1 889 0.12626262626262627 198 25 "DUF3592 family inner membrane protein" +BW25113_1122__3prime ymfA__3prime 0 1176522 1176719 -1 1269 0.22727272727272727 198 45 "DUF3592 family inner membrane protein" +BW25113_1123 potD 0 1177239 1178285 -1 1997 0.08022922636103152 1047 84 "polyamine transporter subunit" +BW25113_1123__5prime potD__5prime 0 1178286 1178483 -1 123 0.030303030303030304 198 6 "polyamine transporter subunit" +BW25113_1123__3prime potD__3prime 0 1177041 1177238 -1 2491 0.3282828282828283 198 65 "polyamine transporter subunit" +BW25113_1124 potC 0 1178282 1179076 -1 1132 0.06037735849056604 795 48 "polyamine transporter subunit" +BW25113_1124__5prime potC__5prime 0 1179077 1179274 -1 466 0.10606060606060606 198 21 "polyamine transporter subunit" +BW25113_1124__3prime potC__3prime 0 1178084 1178281 -1 320 0.10101010101010101 198 20 "polyamine transporter subunit" +BW25113_1125 potB 0 1179073 1179900 -1 1284 0.07246376811594203 828 60 "polyamine transporter subunit" +BW25113_1125__5prime potB__5prime 0 1179901 1180098 -1 194 0.020202020202020204 198 4 "polyamine transporter subunit" +BW25113_1125__3prime potB__3prime 0 1178875 1179072 -1 181 0.05555555555555555 198 11 "polyamine transporter subunit" +BW25113_1126 potA 0 1179914 1181050 -1 1255 0.048372911169744945 1137 55 "polyamine transporter subunit" +BW25113_1126__5prime potA__5prime 0 1181051 1181248 -1 351 0.08080808080808081 198 16 "polyamine transporter subunit" +BW25113_1126__3prime potA__3prime 0 1179716 1179913 -1 360 0.08080808080808081 198 16 "polyamine transporter subunit" +BW25113_1127 pepT 0 1181300 1182526 1 1374 0.06030969845150774 1227 74 "peptidase T" +BW25113_1127__5prime pepT__5prime 0 1181102 1181299 1 355 0.09090909090909091 198 18 "peptidase T" +BW25113_1127__3prime pepT__3prime 0 1182527 1182724 1 342 0.06565656565656566 198 13 "peptidase T" +1182538_1182562 1182538_1182562 0 1182539 1182562 1 0 0.0 24 0 "1182538_1182562" +1182538_1182562__5prime 1182538_1182562__5prime 0 1182341 1182538 1 196 0.03535353535353535 198 7 "1182538_1182562" +1182538_1182562__3prime 1182538_1182562__3prime 0 1182563 1182760 1 351 0.0707070707070707 198 14 "1182538_1182562" +BW25113_1128 roxA 0 1182575 1183696 -1 1473 0.059714795008912656 1122 67 "50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase" +BW25113_1128__5prime roxA__5prime 0 1183697 1183894 -1 161 0.045454545454545456 198 9 "50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase" +BW25113_1128__3prime roxA__3prime 0 1182377 1182574 -1 140 0.020202020202020204 198 4 "50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase" +BW25113_1129 phoQ 0 1183772 1185232 -1 3694 0.09924709103353867 1461 145 "sensory histidine kinase in two-component regulatory system with PhoP" +BW25113_1129__5prime phoQ__5prime 0 1185233 1185430 -1 391 0.1111111111111111 198 22 "sensory histidine kinase in two-component regulatory system with PhoP" +BW25113_1129__3prime phoQ__3prime 0 1183574 1183771 -1 0 0.0 198 0 "sensory histidine kinase in two-component regulatory system with PhoP" +BW25113_1130 phoP 0 1185232 1185903 -1 1669 0.13392857142857142 672 90 "response regulator in two-component regulatory system with PhoQ" +BW25113_1130__5prime phoP__5prime 0 1185904 1186101 -1 379 0.08585858585858586 198 17 "response regulator in two-component regulatory system with PhoQ" +BW25113_1130__3prime phoP__3prime 0 1185034 1185231 -1 537 0.08585858585858586 198 17 "response regulator in two-component regulatory system with PhoQ" +1186035_1186058 1186035_1186058 0 1186036 1186058 1 121 0.17391304347826086 23 4 "1186035_1186058" +1186035_1186058__5prime 1186035_1186058__5prime 0 1185838 1186035 1 266 0.06060606060606061 198 12 "1186035_1186058" +1186035_1186058__3prime 1186035_1186058__3prime 0 1186059 1186256 1 95 0.020202020202020204 198 4 "1186035_1186058" +BW25113_1131 purB 0 1186072 1187442 -1 256 0.01312910284463895 1371 18 "adenylosuccinate lyase" +BW25113_1131__5prime purB__5prime 0 1187443 1187640 -1 218 0.04040404040404041 198 8 "adenylosuccinate lyase" +BW25113_1131__3prime purB__3prime 0 1185874 1186071 -1 341 0.07575757575757576 198 15 "adenylosuccinate lyase" +BW25113_1132 hflD 0 1187446 1188087 -1 449 0.0264797507788162 642 17 "putative lysogenization regulator" +BW25113_1132__5prime hflD__5prime 0 1188088 1188285 -1 143 0.03535353535353535 198 7 "putative lysogenization regulator" +BW25113_1132__3prime hflD__3prime 0 1187248 1187445 -1 0 0.0 198 0 "putative lysogenization regulator" +BW25113_1133 mnmA 0 1188123 1189229 -1 207 0.013550135501355014 1107 15 "tRNA(Gln and Lys and Glu) U34 2-thiouridylase and first step in mnm(5)-s(2)U34-tRNA synthesis" +BW25113_1133__5prime mnmA__5prime 0 1189230 1189427 -1 215 0.050505050505050504 198 10 "tRNA(Gln and Lys and Glu) U34 2-thiouridylase and first step in mnm(5)-s(2)U34-tRNA synthesis" +BW25113_1133__3prime mnmA__3prime 0 1187925 1188122 -1 91 0.020202020202020204 198 4 "tRNA(Gln and Lys and Glu) U34 2-thiouridylase and first step in mnm(5)-s(2)U34-tRNA synthesis" +BW25113_1134 nudJ 0 1189283 1189744 -1 285 0.03896103896103896 462 18 "bifunctional thiamine pyrimidine pyrophosphate hydrolase/ thiamine pyrophosphate hydrolase" +BW25113_1134__5prime nudJ__5prime 0 1189745 1189942 -1 267 0.08080808080808081 198 16 "bifunctional thiamine pyrimidine pyrophosphate hydrolase/ thiamine pyrophosphate hydrolase" +BW25113_1134__3prime nudJ__3prime 0 1189085 1189282 -1 61 0.020202020202020204 198 4 "bifunctional thiamine pyrimidine pyrophosphate hydrolase/ thiamine pyrophosphate hydrolase" +BW25113_1135 rluE 0 1189754 1190407 -1 1167 0.10091743119266056 654 66 "23S rRNA pseudouridine(2457) synthase" +BW25113_1135__5prime rluE__5prime 0 1190408 1190605 -1 108 0.04040404040404041 198 8 "23S rRNA pseudouridine(2457) synthase" +BW25113_1135__3prime rluE__3prime 0 1189556 1189753 -1 82 0.045454545454545456 198 9 "23S rRNA pseudouridine(2457) synthase" +BW25113_1136 icd 0 1190579 1191829 1 687 0.03916866506794564 1251 49 "e14 prophage; isocitrate dehydrogenase and specific for NADP+" +BW25113_1136__5prime icd__5prime 0 1190381 1190578 1 108 0.04040404040404041 198 8 "e14 prophage; isocitrate dehydrogenase and specific for NADP+" +BW25113_1136__3prime icd__3prime 0 1191830 1192027 1 536 0.17676767676767677 198 35 "e14 prophage; isocitrate dehydrogenase and specific for NADP+" +1191675_1206868 1191675_1206868 0 1191676 1206868 1 54682 0.131113012571579 15193 1992 "1191675_1206868" +1191675_1206868__5prime 1191675_1206868__5prime 0 1191478 1191675 1 285 0.12121212121212122 198 24 "1191675_1206868" +1191675_1206868__3prime 1191675_1206868__3prime 0 1206869 1207066 1 1243 0.2676767676767677 198 53 "1191675_1206868" +BW25113_1137 ymfD 0 1192323 1192988 -1 1188 0.07807807807807808 666 52 "e14 prophage; putative SAM-dependent methyltransferase" +BW25113_1137__5prime ymfD__5prime 0 1192989 1193186 -1 153 0.045454545454545456 198 9 "e14 prophage; putative SAM-dependent methyltransferase" +BW25113_1137__3prime ymfD__3prime 0 1192125 1192322 -1 2607 0.47474747474747475 198 94 "e14 prophage; putative SAM-dependent methyltransferase" +BW25113_1138 ymfE 0 1192989 1193693 -1 620 0.0524822695035461 705 37 "e14 prophage; putative inner membrane protein" +BW25113_1138__5prime ymfE__5prime 0 1193694 1193891 -1 1194 0.2222222222222222 198 44 "e14 prophage; putative inner membrane protein" +BW25113_1138__3prime ymfE__3prime 0 1192791 1192988 -1 299 0.06565656565656566 198 13 "e14 prophage; putative inner membrane protein" +BW25113_1139 lit 0 1194151 1195044 1 4195 0.1319910514541387 894 118 "e14 prophage; cell death peptidase and inhibitor of T4 late gene expression" +BW25113_1139__5prime lit__5prime 0 1193953 1194150 1 1687 0.3282828282828283 198 65 "e14 prophage; cell death peptidase and inhibitor of T4 late gene expression" +BW25113_1139__3prime lit__3prime 0 1195045 1195242 1 2346 0.30808080808080807 198 61 "e14 prophage; cell death peptidase and inhibitor of T4 late gene expression" +BW25113_1140 intE 0 1195135 1196262 -1 6187 0.1773049645390071 1128 200 "e14 prophage; putative integrase" +BW25113_1140__5prime intE__5prime 0 1196263 1196460 -1 867 0.11616161616161616 198 23 "e14 prophage; putative integrase" +BW25113_1140__3prime intE__3prime 0 1194937 1195134 -1 1223 0.14646464646464646 198 29 "e14 prophage; putative integrase" +BW25113_1141 xisE 0 1196243 1196488 -1 945 0.10569105691056911 246 26 "e14 prophage; putative excisionase" +BW25113_1141__5prime xisE__5prime 0 1196489 1196686 -1 609 0.16666666666666666 198 33 "e14 prophage; putative excisionase" +BW25113_1141__3prime xisE__3prime 0 1196045 1196242 -1 292 0.06565656565656566 198 13 "e14 prophage; putative excisionase" +BW25113_1143 ymfI 0 1196953 1197294 1 155 0.038011695906432746 342 13 "e14 prophage; uncharacterized protein" +BW25113_1143__5prime ymfI__5prime 0 1196755 1196952 1 237 0.06060606060606061 198 12 "e14 prophage; uncharacterized protein" +BW25113_1143__3prime ymfI__3prime 0 1197295 1197492 1 418 0.14646464646464646 198 29 "e14 prophage; uncharacterized protein" +BW25113_1144 ymfJ 0 1197232 1197540 -1 832 0.13268608414239483 309 41 "e14 prophage; uncharacterized protein" +BW25113_1144__5prime ymfJ__5prime 0 1197541 1197738 -1 21 0.010101010101010102 198 2 "e14 prophage; uncharacterized protein" +BW25113_1144__3prime ymfJ__3prime 0 1197034 1197231 -1 114 0.03535353535353535 198 7 "e14 prophage; uncharacterized protein" +BW25113_1145 cohE 0 1197715 1198389 -1 0 0.0 675 0 "e14 prophage; repressor protein phage e14" +BW25113_1145__5prime cohE__5prime 0 1198390 1198587 -1 111 0.015151515151515152 198 3 "e14 prophage; repressor protein phage e14" +BW25113_1145__3prime cohE__3prime 0 1197517 1197714 -1 21 0.010101010101010102 198 2 "e14 prophage; repressor protein phage e14" +BW25113_1146 croE 0 1198480 1198680 1 88 0.01990049751243781 201 4 "e14 prophage; putative DNA-binding transcriptional regulator" +BW25113_1146__5prime croE__5prime 0 1198282 1198479 1 85 0.005050505050505051 198 1 "e14 prophage; putative DNA-binding transcriptional regulator" +BW25113_1146__3prime croE__3prime 0 1198681 1198878 1 222 0.025252525252525252 198 5 "e14 prophage; putative DNA-binding transcriptional regulator" +BW25113_1147 ymfL 0 1198724 1199281 1 429 0.025089605734767026 558 14 "e14 prophage; putative DNA-binding transcriptional regulator" +BW25113_1147__5prime ymfL__5prime 0 1198526 1198723 1 121 0.020202020202020204 198 4 "e14 prophage; putative DNA-binding transcriptional regulator" +BW25113_1147__3prime ymfL__3prime 0 1199282 1199479 1 603 0.10606060606060606 198 21 "e14 prophage; putative DNA-binding transcriptional regulator" +BW25113_1148 ymfM 0 1199278 1199616 1 1050 0.12389380530973451 339 42 "e14 prophage; uncharacterized protein" +BW25113_1148__5prime ymfM__5prime 0 1199080 1199277 1 100 0.030303030303030304 198 6 "e14 prophage; uncharacterized protein" +BW25113_1148__3prime ymfM__3prime 0 1199617 1199814 1 465 0.13636363636363635 198 27 "e14 prophage; uncharacterized protein" +BW25113_4692 oweE 0 1199626 1199859 1 494 0.12393162393162394 234 29 "1199625_1199859" +BW25113_4692__5prime oweE__5prime 0 1199428 1199625 1 632 0.12121212121212122 198 24 "1199625_1199859" +BW25113_4692__3prime oweE__3prime 0 1199860 1200057 1 252 0.0707070707070707 198 14 "1199625_1199859" +BW25113_4693 aaaE 0 1199860 1200993 1 1862 0.07142857142857142 1134 81 "1199859_1200993" +BW25113_4693__5prime aaaE__5prime 0 1199662 1199859 1 418 0.12121212121212122 198 24 "1199859_1200993" +BW25113_4693__3prime aaaE__3prime 0 1200994 1201191 1 875 0.1111111111111111 198 22 "1199859_1200993" +BW25113_1150 ymfR 0 1201005 1201187 1 843 0.1092896174863388 183 20 "e14 prophage; uncharacterized protein" +BW25113_1150__5prime ymfR__5prime 0 1200807 1201004 1 214 0.050505050505050504 198 10 "e14 prophage; uncharacterized protein" +BW25113_1150__3prime ymfR__3prime 0 1201188 1201385 1 190 0.0707070707070707 198 14 "e14 prophage; uncharacterized protein" +BW25113_1151 beeE 0 1201187 1201598 1 437 0.06553398058252427 412 27 "1201186_1201598" +BW25113_1151__5prime beeE__5prime 0 1200989 1201186 1 769 0.10101010101010101 198 20 "1201186_1201598" +BW25113_1151__3prime beeE__3prime 0 1201599 1201796 1 1188 0.1717171717171717 198 34 "1201186_1201598" +BW25113_1152 jayE 0 1201599 1202378 1 2287 0.09871794871794871 780 77 "1201598_1202378" +BW25113_1152__5prime jayE__5prime 0 1201401 1201598 1 157 0.06060606060606061 198 12 "1201598_1202378" +BW25113_1152__3prime jayE__3prime 0 1202379 1202576 1 193 0.06565656565656566 198 13 "1201598_1202378" +BW25113_1153 ymfQ 0 1202369 1202953 1 1927 0.0905982905982906 585 53 "prohage e14 tail protein homolog" +BW25113_1153__5prime ymfQ__5prime 0 1202171 1202368 1 489 0.10606060606060606 198 21 "prohage e14 tail protein homolog" +BW25113_1153__3prime ymfQ__3prime 0 1202954 1203151 1 337 0.1111111111111111 198 22 "prohage e14 tail protein homolog" +BW25113_1154 stfP 0 1202957 1203586 1 2974 0.173015873015873 630 109 "e14 prophage; uncharacterized protein" +BW25113_1154__5prime stfP__5prime 0 1202759 1202956 1 474 0.10606060606060606 198 21 "e14 prophage; uncharacterized protein" +BW25113_1154__3prime stfP__3prime 0 1203587 1203784 1 568 0.13131313131313133 198 26 "e14 prophage; uncharacterized protein" +BW25113_1155 tfaP 0 1203588 1204001 1 4298 0.23429951690821257 414 97 "e14 prophage; uncharacterized protein" +BW25113_1155__5prime tfaP__5prime 0 1203390 1203587 1 1682 0.23232323232323232 198 46 "e14 prophage; uncharacterized protein" +BW25113_1155__3prime tfaP__3prime 0 1204002 1204199 1 2918 0.4444444444444444 198 88 "e14 prophage; uncharacterized protein" +BW25113_1156 tfaE 0 1203973 1204575 -1 6794 0.32669983416252074 603 197 "e14 prophage; putative tail fiber assembly protein" +BW25113_1156__5prime tfaE__5prime 0 1204576 1204773 -1 531 0.13131313131313133 198 26 "e14 prophage; putative tail fiber assembly protein" +BW25113_1156__3prime tfaE__3prime 0 1203775 1203972 -1 2710 0.2828282828282828 198 56 "e14 prophage; putative tail fiber assembly protein" +BW25113_1157 stfE 0 1204575 1205075 -1 2885 0.21756487025948104 501 109 "1204574_1205075" +BW25113_1157__5prime stfE__5prime 0 1205076 1205273 -1 619 0.16666666666666666 198 33 "1204574_1205075" +BW25113_1157__3prime stfE__3prime 0 1204377 1204574 -1 1984 0.3282828282828283 198 65 "1204574_1205075" +BW25113_1158 pinE 0 1205141 1205695 1 2331 0.2 555 111 "e14 prophage; site-specific DNA recombinase" +BW25113_1158__5prime pinE__5prime 0 1204943 1205140 1 455 0.18686868686868688 198 37 "e14 prophage; site-specific DNA recombinase" +BW25113_1158__3prime pinE__3prime 0 1205696 1205893 1 856 0.16666666666666666 198 33 "e14 prophage; site-specific DNA recombinase" +BW25113_1159 mcrA 0 1205802 1206635 1 3751 0.2314148681055156 834 193 "putative 5-methylcytosine/5-hydroxymethylcytosine-specific restriction nuclease; 5-methylcytosine DNA binding protein; e14 prophage gene" +BW25113_1159__5prime mcrA__5prime 0 1205604 1205801 1 288 0.10606060606060606 198 21 "putative 5-methylcytosine/5-hydroxymethylcytosine-specific restriction nuclease; 5-methylcytosine DNA binding protein; e14 prophage gene" +BW25113_1159__3prime mcrA__3prime 0 1206636 1206833 1 54 0.020202020202020204 198 4 "putative 5-methylcytosine/5-hydroxymethylcytosine-specific restriction nuclease; 5-methylcytosine DNA binding protein; e14 prophage gene" +BW25113_4519 icdC 0 1206869 1207033 1 1232 0.3090909090909091 165 51 "1206868_1207033" +BW25113_4519__5prime icdC__5prime 0 1206671 1206868 1 307 0.05555555555555555 198 11 "1206868_1207033" +BW25113_4519__3prime icdC__3prime 0 1207034 1207231 1 117 0.05555555555555555 198 11 "1206868_1207033" +BW25113_1160 iraM 0 1207136 1207459 -1 395 0.08333333333333333 324 27 "RpoS stabilzer during Mg starvation and anti-RssB factor" +BW25113_1160__5prime iraM__5prime 0 1207460 1207657 -1 13 0.005050505050505051 198 1 "RpoS stabilzer during Mg starvation and anti-RssB factor" +BW25113_1160__3prime iraM__3prime 0 1206938 1207135 -1 463 0.11616161616161616 198 23 "RpoS stabilzer during Mg starvation and anti-RssB factor" +BW25113_1161 ycgX 0 1208159 1208563 -1 1140 0.10123456790123457 405 41 "DUF1398 family protein" +BW25113_1161__5prime ycgX__5prime 0 1208564 1208761 -1 1573 0.26262626262626265 198 52 "DUF1398 family protein" +BW25113_1161__3prime ycgX__3prime 0 1207961 1208158 -1 62 0.03535353535353535 198 7 "DUF1398 family protein" +BW25113_1162 bluR 0 1208784 1209515 -1 3754 0.20355191256830601 732 149 "repressor of blue light-responsive genes" +BW25113_1162__5prime bluR__5prime 0 1209516 1209713 -1 307 0.06565656565656566 198 13 "repressor of blue light-responsive genes" +BW25113_1162__3prime bluR__3prime 0 1208586 1208783 -1 1617 0.25757575757575757 198 51 "repressor of blue light-responsive genes" +BW25113_1163 bluF 0 1209720 1210931 -1 7743 0.22772277227722773 1212 276 "anti-repressor for YcgE and blue light-responsive; FAD-binding; has c-di-GMP phosphodiesterase-like EAL domain and but does not degrade c-di-GMP" +BW25113_1163__5prime bluF__5prime 0 1210932 1211129 -1 866 0.1111111111111111 198 22 "anti-repressor for YcgE and blue light-responsive; FAD-binding; has c-di-GMP phosphodiesterase-like EAL domain and but does not degrade c-di-GMP" +BW25113_1163__3prime bluF__3prime 0 1209522 1209719 -1 307 0.06565656565656566 198 13 "anti-repressor for YcgE and blue light-responsive; FAD-binding; has c-di-GMP phosphodiesterase-like EAL domain and but does not degrade c-di-GMP" +BW25113_1164 ycgZ 0 1211245 1211481 1 1052 0.1518987341772152 237 36 "RcsB connector protein for regulation of biofilm and acid-resistance" +BW25113_1164__5prime ycgZ__5prime 0 1211047 1211244 1 193 0.050505050505050504 198 10 "RcsB connector protein for regulation of biofilm and acid-resistance" +BW25113_1164__3prime ycgZ__3prime 0 1211482 1211679 1 629 0.19696969696969696 198 39 "RcsB connector protein for regulation of biofilm and acid-resistance" +BW25113_1165 ymgA 0 1211524 1211796 1 777 0.12454212454212454 273 34 "RcsB connector protein for regulation of biofilm" +BW25113_1165__5prime ymgA__5prime 0 1211326 1211523 1 998 0.2222222222222222 198 44 "RcsB connector protein for regulation of biofilm" +BW25113_1165__3prime ymgA__3prime 0 1211797 1211994 1 837 0.15151515151515152 198 30 "RcsB connector protein for regulation of biofilm" +BW25113_1166 ariR 0 1211825 1212091 1 800 0.12359550561797752 267 33 "RcsB connector protein for regulation of biofilm and acid-resistance" +BW25113_1166__5prime ariR__5prime 0 1211627 1211824 1 653 0.12121212121212122 198 24 "RcsB connector protein for regulation of biofilm and acid-resistance" +BW25113_1166__3prime ariR__3prime 0 1212092 1212289 1 455 0.10101010101010101 198 20 "RcsB connector protein for regulation of biofilm and acid-resistance" +BW25113_1167 ymgC 0 1212204 1212452 1 1247 0.26907630522088355 249 67 "Blue light and low temperature and stress induced protein" +BW25113_1167__5prime ymgC__5prime 0 1212006 1212203 1 239 0.050505050505050504 198 10 "Blue light and low temperature and stress induced protein" +BW25113_1167__3prime ymgC__3prime 0 1212453 1212650 1 1245 0.17676767676767677 198 35 "Blue light and low temperature and stress induced protein" +BW25113_1168 ycgG 0 1212784 1214307 1 8955 0.229002624671916 1524 349 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_1168__5prime ycgG__5prime 0 1212586 1212783 1 2117 0.15656565656565657 198 31 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_1168__3prime ycgG__3prime 0 1214308 1214505 1 454 0.1414141414141414 198 28 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_4520 ymgF 0 1214439 1214657 1 2054 0.3150684931506849 219 69 "inner membrane division septum protein" +BW25113_4520__5prime ymgF__5prime 0 1214241 1214438 1 578 0.18181818181818182 198 36 "inner membrane division septum protein" +BW25113_4520__3prime ymgF__3prime 0 1214658 1214855 1 1326 0.23737373737373738 198 47 "inner membrane division septum protein" +BW25113_4491 ycgH 0 1215057 1217704 1 10798 0.15974320241691842 2648 423 "1215056_1217704" +BW25113_4491__5prime ycgH__5prime 0 1214859 1215056 1 212 0.06565656565656566 198 13 "1215056_1217704" +BW25113_4491__3prime ycgH__3prime 0 1217705 1217902 1 662 0.11616161616161616 198 23 "1215056_1217704" +BW25113_1171 ymgD 0 1217761 1218090 -1 890 0.09393939393939393 330 31 "uncharacterized protein" +BW25113_1171__5prime ymgD__5prime 0 1218091 1218288 -1 482 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_1171__3prime ymgD__3prime 0 1217563 1217760 -1 752 0.16161616161616163 198 32 "uncharacterized protein" +BW25113_1172 ymgG 0 1218100 1218444 -1 3452 0.21739130434782608 345 75 "UPF0757 family protein" +BW25113_1172__5prime ymgG__5prime 0 1218445 1218642 -1 410 0.13131313131313133 198 26 "UPF0757 family protein" +BW25113_1172__3prime ymgG__3prime 0 1217902 1218099 -1 508 0.09595959595959595 198 19 "UPF0757 family protein" +BW25113_4593 ymgI 0 1218446 1218619 -1 405 0.14367816091954022 174 25 "uncharacterized protein" +BW25113_4593__5prime ymgI__5prime 0 1218620 1218817 -1 372 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_4593__3prime ymgI__3prime 0 1218248 1218445 -1 3154 0.3282828282828283 198 65 "uncharacterized protein" +BW25113_4594 ymgJ 0 1218720 1218905 1 739 0.12903225806451613 186 24 "uncharacterized protein" +BW25113_4594__5prime ymgJ__5prime 0 1218522 1218719 1 191 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_4594__3prime ymgJ__3prime 0 1218906 1219103 1 2143 0.3333333333333333 198 66 "uncharacterized protein" +BW25113_4521 ycgI 0 1219020 1219363 1 923 0.13953488372093023 344 48 "1219019_1219363" +BW25113_4521__5prime ycgI__5prime 0 1218822 1219019 1 2314 0.3484848484848485 198 69 "1219019_1219363" +BW25113_4521__3prime ycgI__3prime 0 1219364 1219561 1 257 0.04040404040404041 198 8 "1219019_1219363" +BW25113_1174 minE 0 1219735 1220001 -1 506 0.03745318352059925 267 10 "cell division topological specificity factor" +BW25113_1174__5prime minE__5prime 0 1220002 1220199 -1 774 0.1111111111111111 198 22 "cell division topological specificity factor" +BW25113_1174__3prime minE__3prime 0 1219537 1219734 -1 910 0.1111111111111111 198 22 "cell division topological specificity factor" +BW25113_1175 minD 0 1220005 1220817 -1 2061 0.1008610086100861 813 82 "membrane ATPase of the MinC-MinD-MinE system" +BW25113_1175__5prime minD__5prime 0 1220818 1221015 -1 555 0.0707070707070707 198 14 "membrane ATPase of the MinC-MinD-MinE system" +BW25113_1175__3prime minD__3prime 0 1219807 1220004 -1 44 0.020202020202020204 198 4 "membrane ATPase of the MinC-MinD-MinE system" +BW25113_1176 minC 0 1220841 1221536 -1 1574 0.08620689655172414 696 60 "cell division inhibitor" +BW25113_1176__5prime minC__5prime 0 1221537 1221734 -1 830 0.19696969696969696 198 39 "cell division inhibitor" +BW25113_1176__3prime minC__3prime 0 1220643 1220840 -1 627 0.12626262626262627 198 25 "cell division inhibitor" +BW25113_1177 ycgJ 0 1222056 1222424 1 1790 0.19241192411924118 369 71 "uncharacterized protein" +BW25113_1177__5prime ycgJ__5prime 0 1221858 1222055 1 2026 0.30303030303030304 198 60 "uncharacterized protein" +BW25113_1177__3prime ycgJ__3prime 0 1222425 1222622 1 1606 0.19696969696969696 198 39 "uncharacterized protein" +BW25113_1178 pliG 0 1222527 1222928 -1 3431 0.22885572139303484 402 92 "periplasmic inhibitor of g-type lysozyme" +BW25113_1178__5prime pliG__5prime 0 1222929 1223126 -1 217 0.050505050505050504 198 10 "periplasmic inhibitor of g-type lysozyme" +BW25113_1178__3prime pliG__3prime 0 1222329 1222526 -1 1773 0.2676767676767677 198 53 "periplasmic inhibitor of g-type lysozyme" +BW25113_1179 ycgL 0 1223170 1223463 1 310 0.08163265306122448 294 24 "UPF0745 family protein" +BW25113_1179__5prime ycgL__5prime 0 1222972 1223169 1 178 0.050505050505050504 198 10 "UPF0745 family protein" +BW25113_1179__3prime ycgL__3prime 0 1223464 1223661 1 449 0.1111111111111111 198 22 "UPF0745 family protein" +BW25113_1180 ycgM 0 1223535 1224194 1 897 0.07121212121212121 660 47 "putative isomerase/hydrolase" +BW25113_1180__5prime ycgM__5prime 0 1223337 1223534 1 303 0.08080808080808081 198 16 "putative isomerase/hydrolase" +BW25113_1180__3prime ycgM__3prime 0 1224195 1224392 1 1005 0.13131313131313133 198 26 "putative isomerase/hydrolase" +BW25113_1181 ycgN 0 1224271 1224732 1 3150 0.24458874458874458 462 113 "UPF0153 family cysteine cluster protein" +BW25113_1181__5prime ycgN__5prime 0 1224073 1224270 1 305 0.020202020202020204 198 4 "UPF0153 family cysteine cluster protein" +BW25113_1181__3prime ycgN__3prime 0 1224733 1224930 1 905 0.18686868686868688 198 37 "UPF0153 family cysteine cluster protein" +BW25113_1182 hlyE 0 1224939 1225850 -1 3643 0.14473684210526316 912 132 "hemolysin E" +BW25113_1182__5prime hlyE__5prime 0 1225851 1226048 -1 20 0.010101010101010102 198 2 "hemolysin E" +BW25113_1182__3prime hlyE__3prime 0 1224741 1224938 -1 842 0.1919191919191919 198 38 "hemolysin E" +BW25113_1183 umuD 0 1226223 1226642 1 801 0.10952380952380952 420 46 "DNA polymerase V and subunit D" +BW25113_1183__5prime umuD__5prime 0 1226025 1226222 1 1127 0.18181818181818182 198 36 "DNA polymerase V and subunit D" +BW25113_1183__3prime umuD__3prime 0 1226643 1226840 1 207 0.0707070707070707 198 14 "DNA polymerase V and subunit D" +BW25113_1184 umuC 0 1226642 1227910 1 1568 0.05752561071710008 1269 73 "DNA polymerase V and subunit C" +BW25113_1184__5prime umuC__5prime 0 1226444 1226641 1 418 0.13131313131313133 198 26 "DNA polymerase V and subunit C" +BW25113_1184__3prime umuC__3prime 0 1227911 1228108 1 149 0.045454545454545456 198 9 "DNA polymerase V and subunit C" +BW25113_1185 dsbB 0 1227956 1228486 -1 763 0.0583804143126177 531 31 "oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I" +BW25113_1185__5prime dsbB__5prime 0 1228487 1228684 -1 278 0.050505050505050504 198 10 "oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I" +BW25113_1185__3prime dsbB__3prime 0 1227758 1227955 -1 434 0.10101010101010101 198 20 "oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I" +BW25113_1186 nhaB 0 1228632 1230173 -1 2420 0.06874189364461739 1542 106 "sodium:proton antiporter" +BW25113_1186__5prime nhaB__5prime 0 1230174 1230371 -1 489 0.13636363636363635 198 27 "sodium:proton antiporter" +BW25113_1186__3prime nhaB__3prime 0 1228434 1228631 -1 85 0.030303030303030304 198 6 "sodium:proton antiporter" +BW25113_1187 fadR 0 1230394 1231113 1 1451 0.08055555555555556 720 58 "fatty acid metabolism regulon transcriptional regulator" +BW25113_1187__5prime fadR__5prime 0 1230196 1230393 1 508 0.14646464646464646 198 29 "fatty acid metabolism regulon transcriptional regulator" +BW25113_1187__3prime fadR__3prime 0 1231114 1231311 1 363 0.1111111111111111 198 22 "fatty acid metabolism regulon transcriptional regulator" +BW25113_1188 ycgB 0 1231165 1232697 -1 2959 0.09458577951728636 1533 145 "SpoVR family stationary phase protein" +BW25113_1188__5prime ycgB__5prime 0 1232698 1232895 -1 447 0.09595959595959595 198 19 "SpoVR family stationary phase protein" +BW25113_1188__3prime ycgB__3prime 0 1230967 1231164 -1 194 0.045454545454545456 198 9 "SpoVR family stationary phase protein" +BW25113_1189 dadA 0 1233027 1234325 1 1892 0.07236335642802155 1299 94 "D-amino acid dehydrogenase" +BW25113_1189__5prime dadA__5prime 0 1232829 1233026 1 172 0.06565656565656566 198 13 "D-amino acid dehydrogenase" +BW25113_1189__3prime dadA__3prime 0 1234326 1234523 1 339 0.10606060606060606 198 21 "D-amino acid dehydrogenase" +BW25113_1190 dadX 0 1234335 1235405 1 1996 0.08496732026143791 1071 91 "alanine racemase and catabolic and PLP-binding" +BW25113_1190__5prime dadX__5prime 0 1234137 1234334 1 386 0.1111111111111111 198 22 "alanine racemase and catabolic and PLP-binding" +BW25113_1190__3prime dadX__3prime 0 1235406 1235603 1 250 0.07575757575757576 198 15 "alanine racemase and catabolic and PLP-binding" +BW25113_1191 cvrA 0 1235791 1237527 -1 4217 0.09268854346574554 1737 161 "putative cation/proton antiporter" +BW25113_1191__5prime cvrA__5prime 0 1237528 1237725 -1 516 0.13131313131313133 198 26 "putative cation/proton antiporter" +BW25113_1191__3prime cvrA__3prime 0 1235593 1235790 -1 282 0.07575757575757576 198 15 "putative cation/proton antiporter" +BW25113_1192 ldcA 0 1237622 1238536 -1 1026 0.07213114754098361 915 66 "murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A" +BW25113_1192__5prime ldcA__5prime 0 1238537 1238734 -1 477 0.06565656565656566 198 13 "murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A" +BW25113_1192__3prime ldcA__3prime 0 1237424 1237621 -1 534 0.1111111111111111 198 22 "murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A" +BW25113_1193 emtA 0 1238636 1239247 1 825 0.05718954248366013 612 35 "lytic murein endotransglycosylase E" +BW25113_1193__5prime emtA__5prime 0 1238438 1238635 1 373 0.0707070707070707 198 14 "lytic murein endotransglycosylase E" +BW25113_1193__3prime emtA__3prime 0 1239248 1239445 1 191 0.05555555555555555 198 11 "lytic murein endotransglycosylase E" +BW25113_1194 ycgR 0 1239249 1239983 -1 1034 0.07346938775510205 735 54 "flagellar velocity braking protein and c-di-GMP-regulated" +BW25113_1194__5prime ycgR__5prime 0 1239984 1240181 -1 1060 0.17676767676767677 198 35 "flagellar velocity braking protein and c-di-GMP-regulated" +BW25113_1194__3prime ycgR__3prime 0 1239051 1239248 -1 111 0.04040404040404041 198 8 "flagellar velocity braking protein and c-di-GMP-regulated" +BW25113_1195 ymgE 0 1240184 1240438 1 684 0.1450980392156863 255 37 "UPF0410 family putative inner membrane protein" +BW25113_1195__5prime ymgE__5prime 0 1239986 1240183 1 1060 0.17676767676767677 198 35 "UPF0410 family putative inner membrane protein" +BW25113_1195__3prime ymgE__3prime 0 1240439 1240636 1 399 0.1414141414141414 198 28 "UPF0410 family putative inner membrane protein" +BW25113_1196 ycgY 0 1240616 1241056 1 1092 0.14285714285714285 441 63 "uncharacterized protein" +BW25113_1196__5prime ycgY__5prime 0 1240418 1240615 1 416 0.15656565656565657 198 31 "uncharacterized protein" +BW25113_1196__3prime ycgY__3prime 0 1241057 1241254 1 472 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_1197 treA 0 1241135 1242832 -1 4754 0.1071849234393404 1698 182 "periplasmic trehalase" +BW25113_1197__5prime treA__5prime 0 1242833 1243030 -1 716 0.1414141414141414 198 28 "periplasmic trehalase" +BW25113_1197__3prime treA__3prime 0 1240937 1241134 -1 256 0.07575757575757576 198 15 "periplasmic trehalase" +1243113_1243144 1243113_1243144 0 1243114 1243144 1 105 0.16129032258064516 31 5 "1243113_1243144" +1243113_1243144__5prime 1243113_1243144__5prime 0 1242916 1243113 1 165 0.07575757575757576 198 15 "1243113_1243144" +1243113_1243144__3prime 1243113_1243144__3prime 0 1243145 1243342 1 515 0.09595959595959595 198 19 "1243113_1243144" +BW25113_1198 dhaM 0 1243152 1244570 -1 2610 0.08879492600422834 1419 126 "putative dihydroxyacetone-specific PTS enzymes: HPr component/EI component" +BW25113_1198__5prime dhaM__5prime 0 1244571 1244768 -1 205 0.0707070707070707 198 14 "putative dihydroxyacetone-specific PTS enzymes: HPr component/EI component" +BW25113_1198__3prime dhaM__3prime 0 1242954 1243151 -1 402 0.10101010101010101 198 20 "putative dihydroxyacetone-specific PTS enzymes: HPr component/EI component" +BW25113_1199 dhaL 0 1244581 1245213 -1 738 0.05687203791469194 633 36 "dihydroxyacetone kinase and C-terminal domain" +BW25113_1199__5prime dhaL__5prime 0 1245214 1245411 -1 471 0.13131313131313133 198 26 "dihydroxyacetone kinase and C-terminal domain" +BW25113_1199__3prime dhaL__3prime 0 1244383 1244580 -1 244 0.050505050505050504 198 10 "dihydroxyacetone kinase and C-terminal domain" +BW25113_1200 dhaK 0 1245224 1246294 -1 1570 0.07469654528478058 1071 80 "dihydroxyacetone kinase and PTS-dependent and dihydroxyacetone-binding subunit" +BW25113_1200__5prime dhaK__5prime 0 1246295 1246492 -1 78 0.03535353535353535 198 7 "dihydroxyacetone kinase and PTS-dependent and dihydroxyacetone-binding subunit" +BW25113_1200__3prime dhaK__3prime 0 1245026 1245223 -1 119 0.045454545454545456 198 9 "dihydroxyacetone kinase and PTS-dependent and dihydroxyacetone-binding subunit" +BW25113_1201 dhaR 0 1246522 1248441 1 2410 0.06614583333333333 1920 127 "dhaKLM operon transcription activator" +BW25113_1201__5prime dhaR__5prime 0 1246324 1246521 1 39 0.025252525252525252 198 5 "dhaKLM operon transcription activator" +BW25113_1201__3prime dhaR__3prime 0 1248442 1248639 1 505 0.1111111111111111 198 22 "dhaKLM operon transcription activator" +BW25113_1202 ycgV 0 1248541 1251408 -1 10015 0.13702928870292888 2868 393 "putative adhesin" +BW25113_1202__5prime ycgV__5prime 0 1251409 1251606 -1 1179 0.18686868686868688 198 37 "putative adhesin" +BW25113_1202__3prime ycgV__3prime 0 1248343 1248540 -1 203 0.05555555555555555 198 11 "putative adhesin" +BW25113_1203 ychF 0 1252177 1253268 -1 1128 0.047619047619047616 1092 52 "catalase inhibitor protein; ATPase and K+-dependent and ribosome-associated" +BW25113_1203__5prime ychF__5prime 0 1253269 1253466 -1 62 0.020202020202020204 198 4 "catalase inhibitor protein; ATPase and K+-dependent and ribosome-associated" +BW25113_1203__3prime ychF__3prime 0 1251979 1252176 -1 973 0.21717171717171718 198 43 "catalase inhibitor protein; ATPase and K+-dependent and ribosome-associated" +BW25113_1204 pth 0 1253385 1253969 -1 72 0.008547008547008548 585 5 "peptidyl-tRNA hydrolase" +BW25113_1204__5prime pth__5prime 0 1253970 1254167 -1 173 0.03535353535353535 198 7 "peptidyl-tRNA hydrolase" +BW25113_1204__3prime pth__3prime 0 1253187 1253384 -1 0 0.0 198 0 "peptidyl-tRNA hydrolase" +BW25113_1205 ychH 0 1254247 1254525 1 169 0.021505376344086023 279 6 "DUF2583 family putative inner membrane protein" +BW25113_1205__5prime ychH__5prime 0 1254049 1254246 1 39 0.010101010101010102 198 2 "DUF2583 family putative inner membrane protein" +BW25113_1205__3prime ychH__3prime 0 1254526 1254723 1 159 0.030303030303030304 198 6 "DUF2583 family putative inner membrane protein" +BW25113_1206 dauA 0 1254580 1256259 -1 2117 0.07023809523809524 1680 118 "C4-dicarboxylic acid transporter" +BW25113_1206__5prime dauA__5prime 0 1256260 1256457 -1 70 0.005050505050505051 198 1 "C4-dicarboxylic acid transporter" +BW25113_1206__3prime dauA__3prime 0 1254382 1254579 -1 31 0.005050505050505051 198 1 "C4-dicarboxylic acid transporter" +BW25113_1207 prs 0 1256384 1257331 -1 70 0.0010548523206751054 948 1 "phosphoribosylpyrophosphate synthase" +BW25113_1207__5prime prs__5prime 0 1257332 1257529 -1 37 0.010101010101010102 198 2 "phosphoribosylpyrophosphate synthase" +BW25113_1207__3prime prs__3prime 0 1256186 1256383 -1 0 0.0 198 0 "phosphoribosylpyrophosphate synthase" +BW25113_1208 ispE 0 1257482 1258333 -1 0 0.0 852 0 "4-diphosphocytidyl-2-C-methylerythritol kinase" +BW25113_1208__5prime ispE__5prime 0 1258334 1258531 -1 35 0.005050505050505051 198 1 "4-diphosphocytidyl-2-C-methylerythritol kinase" +BW25113_1208__3prime ispE__3prime 0 1257284 1257481 -1 37 0.010101010101010102 198 2 "4-diphosphocytidyl-2-C-methylerythritol kinase" +BW25113_1209 lolB 0 1258333 1258956 -1 35 0.0016025641025641025 624 1 "lipoprotein localization factor" +BW25113_1209__5prime lolB__5prime 0 1258957 1259154 -1 71 0.03535353535353535 198 7 "lipoprotein localization factor" +BW25113_1209__3prime lolB__3prime 0 1258135 1258332 -1 0 0.0 198 0 "lipoprotein localization factor" +BW25113_1210 hemA 0 1259170 1260426 1 35 0.002386634844868735 1257 3 "glutamyl tRNA reductase" +BW25113_1210__5prime hemA__5prime 0 1258972 1259169 1 71 0.03535353535353535 198 7 "glutamyl tRNA reductase" +BW25113_1210__3prime hemA__3prime 0 1260427 1260624 1 28 0.015151515151515152 198 3 "glutamyl tRNA reductase" +BW25113_1211 prfA 0 1260468 1261550 1 40 0.003693444136657433 1083 4 "peptide chain release factor RF-1" +BW25113_1211__5prime prfA__5prime 0 1260270 1260467 1 63 0.030303030303030304 198 6 "peptide chain release factor RF-1" +BW25113_1211__3prime prfA__3prime 0 1261551 1261748 1 0 0.0 198 0 "peptide chain release factor RF-1" +BW25113_1212 prmC 0 1261550 1262383 1 0 0.0 834 0 "N5-glutamine methyltransferase and modifies release factors RF-1 and RF-2" +BW25113_1212__5prime prmC__5prime 0 1261352 1261549 1 40 0.020202020202020204 198 4 "N5-glutamine methyltransferase and modifies release factors RF-1 and RF-2" +BW25113_1212__3prime prmC__3prime 0 1262384 1262581 1 281 0.0707070707070707 198 14 "N5-glutamine methyltransferase and modifies release factors RF-1 and RF-2" +BW25113_1213 ychQ 0 1262380 1262772 1 361 0.05597964376590331 393 22 "SIRB family inner membrane protein" +BW25113_1213__5prime ychQ__5prime 0 1262182 1262379 1 0 0.0 198 0 "SIRB family inner membrane protein" +BW25113_1213__3prime ychQ__3prime 0 1262773 1262970 1 280 0.07575757575757576 198 15 "SIRB family inner membrane protein" +BW25113_1214 ychA 0 1262776 1263585 1 1634 0.11975308641975309 810 97 "transglutaminase-like TPR-repeat protein" +BW25113_1214__5prime ychA__5prime 0 1262578 1262775 1 188 0.05555555555555555 198 11 "transglutaminase-like TPR-repeat protein" +BW25113_1214__3prime ychA__3prime 0 1263586 1263783 1 52 0.010101010101010102 198 2 "transglutaminase-like TPR-repeat protein" +BW25113_1215 kdsA 0 1263621 1264475 1 38 0.0035087719298245615 855 3 "3-deoxy-D-manno-octulosonate 8-phosphate synthase" +BW25113_1215__5prime kdsA__5prime 0 1263423 1263620 1 504 0.1717171717171717 198 34 "3-deoxy-D-manno-octulosonate 8-phosphate synthase" +BW25113_1215__3prime kdsA__3prime 0 1264476 1264673 1 20 0.015151515151515152 198 3 "3-deoxy-D-manno-octulosonate 8-phosphate synthase" +BW25113_4419 ldrA 0 1264624 1264731 -1 21 0.027777777777777776 108 3 "toxic polypeptide and small" +BW25113_4419__5prime ldrA__5prime 0 1264732 1264929 -1 211 0.09090909090909091 198 18 "toxic polypeptide and small" +BW25113_4419__3prime ldrA__3prime 0 1264426 1264623 -1 58 0.030303030303030304 198 6 "toxic polypeptide and small" +BW25113_4420 rdlA 0 1264779 1264845 1 0 0.0 67 0 "sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR-A repeat and with toxic peptide LdrA" +BW25113_4420__5prime rdlA__5prime 0 1264581 1264778 1 40 0.030303030303030304 198 6 "sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR-A repeat and with toxic peptide LdrA" +BW25113_4420__3prime rdlA__3prime 0 1264846 1265043 1 233 0.08585858585858586 198 17 "sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR-A repeat and with toxic peptide LdrA" +BW25113_4421 ldrB 0 1265159 1265266 -1 226 0.09259259259259259 108 10 "toxic polypeptide and small" +BW25113_4421__5prime ldrB__5prime 0 1265267 1265464 -1 180 0.09595959595959595 198 19 "toxic polypeptide and small" +BW25113_4421__3prime ldrB__3prime 0 1264961 1265158 -1 56 0.020202020202020204 198 4 "toxic polypeptide and small" +BW25113_4422 rdlB 0 1265314 1265379 1 30 0.06060606060606061 66 4 "sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR-B repeat and with toxic peptide LdrB" +BW25113_4422__5prime rdlB__5prime 0 1265116 1265313 1 278 0.07575757575757576 198 15 "sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR-B repeat and with toxic peptide LdrB" +BW25113_4422__3prime rdlB__3prime 0 1265380 1265577 1 372 0.09595959595959595 198 19 "sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR-B repeat and with toxic peptide LdrB" +BW25113_4423 ldrC 0 1265694 1265801 -1 11 0.018518518518518517 108 2 "toxic polypeptide and small" +BW25113_4423__5prime ldrC__5prime 0 1265802 1265999 -1 201 0.09090909090909091 198 18 "toxic polypeptide and small" +BW25113_4423__3prime ldrC__3prime 0 1265496 1265693 -1 191 0.03535353535353535 198 7 "toxic polypeptide and small" +BW25113_4424 rdlC 0 1265849 1265916 1 31 0.029411764705882353 68 2 "sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR-C repeat and with toxic peptide LdrC" +BW25113_4424__5prime rdlC__5prime 0 1265651 1265848 1 40 0.025252525252525252 198 5 "sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR-C repeat and with toxic peptide LdrC" +BW25113_4424__3prime rdlC__3prime 0 1265917 1266114 1 614 0.13636363636363635 198 27 "sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR-C repeat and with toxic peptide LdrC" +BW25113_1216 chaA 0 1266205 1267305 -1 5701 0.18346957311534967 1101 202 "calcium/sodium:proton antiporter" +BW25113_1216__5prime chaA__5prime 0 1267306 1267503 -1 269 0.050505050505050504 198 10 "calcium/sodium:proton antiporter" +BW25113_1216__3prime chaA__3prime 0 1266007 1266204 -1 607 0.1111111111111111 198 22 "calcium/sodium:proton antiporter" +BW25113_1217 chaB 0 1267575 1267805 1 700 0.11688311688311688 231 27 "cation transport regulator" +BW25113_1217__5prime chaB__5prime 0 1267377 1267574 1 223 0.07575757575757576 198 15 "cation transport regulator" +BW25113_1217__3prime chaB__3prime 0 1267806 1268003 1 120 0.05555555555555555 198 11 "cation transport regulator" +BW25113_1218 chaC 0 1267963 1268658 1 821 0.06896551724137931 696 48 "cation transport regulator" +BW25113_1218__5prime chaC__5prime 0 1267765 1267962 1 176 0.06060606060606061 198 12 "cation transport regulator" +BW25113_1218__3prime chaC__3prime 0 1268659 1268856 1 321 0.05555555555555555 198 11 "cation transport regulator" +BW25113_1219 ychN 0 1268702 1269055 -1 626 0.0423728813559322 354 15 "putative sulfur relay protein" +BW25113_1219__5prime ychN__5prime 0 1269056 1269253 -1 389 0.07575757575757576 198 15 "putative sulfur relay protein" +BW25113_1219__3prime ychN__3prime 0 1268504 1268701 -1 71 0.025252525252525252 198 5 "putative sulfur relay protein" +BW25113_1220 ychO 0 1269240 1270634 1 2252 0.08100358422939068 1395 113 "putative invasin" +BW25113_1220__5prime ychO__5prime 0 1269042 1269239 1 318 0.06060606060606061 198 12 "putative invasin" +BW25113_1220__3prime ychO__3prime 0 1270635 1270832 1 342 0.050505050505050504 198 10 "putative invasin" +BW25113_1221 narL 0 1270635 1271285 -1 1282 0.07526881720430108 651 49 "response regulator in two-component regulatory system with NarX (or NarQ)" +BW25113_1221__5prime narL__5prime 0 1271286 1271483 -1 448 0.08080808080808081 198 16 "response regulator in two-component regulatory system with NarX (or NarQ)" +BW25113_1221__3prime narL__3prime 0 1270437 1270634 -1 389 0.10606060606060606 198 21 "response regulator in two-component regulatory system with NarX (or NarQ)" +BW25113_1222 narX 0 1271278 1273074 -1 2759 0.07122982749026155 1797 128 "sensory histidine kinase in two-component regulatory system with NarL" +BW25113_1222__5prime narX__5prime 0 1273075 1273272 -1 228 0.05555555555555555 198 11 "sensory histidine kinase in two-component regulatory system with NarL" +BW25113_1222__3prime narX__3prime 0 1271080 1271277 -1 510 0.12121212121212122 198 24 "sensory histidine kinase in two-component regulatory system with NarL" +BW25113_1223 narK 0 1273413 1274804 1 1554 0.04669540229885057 1392 65 "nitrate/nitrite transporter" +BW25113_1223__5prime narK__5prime 0 1273215 1273412 1 196 0.050505050505050504 198 10 "nitrate/nitrite transporter" +BW25113_1223__3prime narK__3prime 0 1274805 1275002 1 92 0.04040404040404041 198 8 "nitrate/nitrite transporter" +BW25113_1224 narG 0 1275320 1279063 1 4283 0.04674145299145299 3744 175 "nitrate reductase 1 and alpha subunit" +BW25113_1224__5prime narG__5prime 0 1275122 1275319 1 116 0.04040404040404041 198 8 "nitrate reductase 1 and alpha subunit" +BW25113_1224__3prime narG__3prime 0 1279064 1279261 1 32 0.025252525252525252 198 5 "nitrate reductase 1 and alpha subunit" +BW25113_1225 narH 0 1279060 1280598 1 808 0.04028589993502274 1539 62 "nitrate reductase 1 and beta (Fe-S) subunit" +BW25113_1225__5prime narH__5prime 0 1278862 1279059 1 706 0.10606060606060606 198 21 "nitrate reductase 1 and beta (Fe-S) subunit" +BW25113_1225__3prime narH__3prime 0 1280599 1280796 1 243 0.025252525252525252 198 5 "nitrate reductase 1 and beta (Fe-S) subunit" +BW25113_1226 narJ 0 1280595 1281305 1 862 0.05063291139240506 711 36 "molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1" +BW25113_1226__5prime narJ__5prime 0 1280397 1280594 1 53 0.025252525252525252 198 5 "molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1" +BW25113_1226__3prime narJ__3prime 0 1281306 1281503 1 254 0.05555555555555555 198 11 "molybdenum-cofactor-assembly chaperone subunit (delta subunit) of nitrate reductase 1" +BW25113_1227 narI 0 1281305 1281982 1 1061 0.06047197640117994 678 41 "nitrate reductase 1 and gamma (cytochrome b(NR)) subunit" +BW25113_1227__5prime narI__5prime 0 1281107 1281304 1 296 0.08585858585858586 198 17 "nitrate reductase 1 and gamma (cytochrome b(NR)) subunit" +BW25113_1227__3prime narI__3prime 0 1281983 1282180 1 323 0.045454545454545456 198 9 "nitrate reductase 1 and gamma (cytochrome b(NR)) subunit" +1282049_1282121 1282049_1282121 0 1282050 1282121 1 95 0.027777777777777776 72 2 "1282049_1282121" +1282049_1282121__5prime 1282049_1282121__5prime 0 1281852 1282049 1 220 0.06565656565656566 198 13 "1282049_1282121" +1282049_1282121__3prime 1282049_1282121__3prime 0 1282122 1282319 1 221 0.03535353535353535 198 7 "1282049_1282121" +BW25113_4425 rttR 0 1282522 1282692 -1 116 0.03508771929824561 171 6 "rtT sRNA and processed from tyrT transcript" +BW25113_4425__5prime rttR__5prime 0 1282693 1282890 -1 119 0.03535353535353535 198 7 "rtT sRNA and processed from tyrT transcript" +BW25113_4425__3prime rttR__3prime 0 1282324 1282521 -1 137 0.04040404040404041 198 8 "rtT sRNA and processed from tyrT transcript" +BW25113_1229 tpr 0 1282543 1282632 -1 55 0.022222222222222223 90 2 "protamine-like protein" +BW25113_1229__5prime tpr__5prime 0 1282633 1282830 -1 108 0.030303030303030304 198 6 "protamine-like protein" +BW25113_1229__3prime tpr__3prime 0 1282345 1282542 -1 198 0.06060606060606061 198 12 "protamine-like protein" +BW25113_1230 tyrV 0 1282700 1282784 -1 41 0.03529411764705882 85 3 "tRNA-Tyr" +BW25113_1230__5prime tyrV__5prime 0 1282785 1282982 -1 234 0.030303030303030304 198 6 "tRNA-Tyr" +BW25113_1230__3prime tyrV__3prime 0 1282502 1282699 -1 175 0.04040404040404041 198 8 "tRNA-Tyr" +BW25113_1231 tyrT 0 1282994 1283078 -1 25 0.011764705882352941 85 1 "tRNA-Tyr" +BW25113_1231__5prime tyrT__5prime 0 1283079 1283276 -1 186 0.030303030303030304 198 6 "tRNA-Tyr" +BW25113_1231__3prime tyrT__3prime 0 1282796 1282993 -1 241 0.03535353535353535 198 7 "tRNA-Tyr" +BW25113_1232 purU 0 1283238 1284080 -1 949 0.06287069988137604 843 53 "formyltetrahydrofolate hydrolase" +BW25113_1232__5prime purU__5prime 0 1284081 1284278 -1 212 0.09595959595959595 198 19 "formyltetrahydrofolate hydrolase" +BW25113_1232__3prime purU__3prime 0 1283040 1283237 -1 186 0.030303030303030304 198 6 "formyltetrahydrofolate hydrolase" +BW25113_1233 ychJ 0 1284130 1284588 -1 1121 0.1394335511982571 459 64 "UPF0225 family protein" +BW25113_1233__5prime ychJ__5prime 0 1284589 1284786 -1 766 0.1414141414141414 198 28 "UPF0225 family protein" +BW25113_1233__3prime ychJ__3prime 0 1283932 1284129 -1 193 0.08585858585858586 198 17 "UPF0225 family protein" +BW25113_1234 rssA 0 1284701 1285606 1 2173 0.09713024282560706 906 88 "putative patatin-like family phospholipase" +BW25113_1234__5prime rssA__5prime 0 1284503 1284700 1 1181 0.2474747474747475 198 49 "putative patatin-like family phospholipase" +BW25113_1234__3prime rssA__3prime 0 1285607 1285804 1 261 0.050505050505050504 198 10 "putative patatin-like family phospholipase" +BW25113_1235 rssB 0 1285698 1286711 1 2150 0.09171597633136094 1014 93 "PcnB-degradosome interaction factor; response regulator" +BW25113_1235__5prime rssB__5prime 0 1285500 1285697 1 182 0.045454545454545456 198 9 "PcnB-degradosome interaction factor; response regulator" +BW25113_1235__3prime rssB__3prime 0 1286712 1286909 1 519 0.16161616161616163 198 32 "PcnB-degradosome interaction factor; response regulator" +BW25113_1236 galU 0 1286913 1287821 1 1206 0.09350935093509351 909 85 "glucose-1-phosphate uridylyltransferase" +BW25113_1236__5prime galU__5prime 0 1286715 1286912 1 519 0.16161616161616163 198 32 "glucose-1-phosphate uridylyltransferase" +BW25113_1236__3prime galU__3prime 0 1287822 1288019 1 459 0.06565656565656566 198 13 "glucose-1-phosphate uridylyltransferase" +BW25113_1237 hns 0 1287965 1288378 -1 447 0.05555555555555555 414 23 "global DNA-binding transcriptional dual regulator H-NS" +BW25113_1237__5prime hns__5prime 0 1288379 1288576 -1 606 0.07575757575757576 198 15 "global DNA-binding transcriptional dual regulator H-NS" +BW25113_1237__3prime hns__3prime 0 1287767 1287964 -1 549 0.12121212121212122 198 24 "global DNA-binding transcriptional dual regulator H-NS" +BW25113_1238 tdk 0 1288983 1289600 1 3315 0.19741100323624594 618 122 "thymidine kinase/deoxyuridine kinase" +BW25113_1238__5prime tdk__5prime 0 1288785 1288982 1 3096 0.37373737373737376 198 74 "thymidine kinase/deoxyuridine kinase" +BW25113_1238__3prime tdk__3prime 0 1289601 1289798 1 1277 0.23737373737373738 198 47 "thymidine kinase/deoxyuridine kinase" +1289881_1290861 1289881_1290861 0 1289882 1290861 -1 2279 0.0836734693877551 980 82 "1289881_1290861" +1289881_1290861__5prime 1289881_1290861__5prime 0 1290862 1291059 -1 370 0.0707070707070707 198 14 "1289881_1290861" +1289881_1290861__3prime 1289881_1290861__3prime 0 1289684 1289881 -1 909 0.17676767676767677 198 35 "1289881_1290861" +BW25113_4573 insZ 0 1289882 1290778 -1 2145 0.08695652173913043 897 78 "1289881_1290778" +BW25113_4573__5prime insZ__5prime 0 1290779 1290976 -1 367 0.05555555555555555 198 11 "1289881_1290778" +BW25113_4573__3prime insZ__3prime 0 1289684 1289881 -1 909 0.17676767676767677 198 35 "1289881_1290778" +BW25113_1241 adhE 0 1290902 1293577 -1 4582 0.08370702541106129 2676 224 "fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase" +BW25113_1241__5prime adhE__5prime 0 1293578 1293775 -1 281 0.07575757575757576 198 15 "fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase" +BW25113_1241__3prime adhE__3prime 0 1290704 1290901 -1 436 0.1111111111111111 198 22 "fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase" +BW25113_1242 ychE 0 1294054 1294701 1 1439 0.10802469135802469 648 70 "UPF0056 family inner membrane protein" +BW25113_1242__5prime ychE__5prime 0 1293856 1294053 1 48 0.010101010101010102 198 2 "UPF0056 family inner membrane protein" +BW25113_1242__3prime ychE__3prime 0 1294702 1294899 1 331 0.10606060606060606 198 21 "UPF0056 family inner membrane protein" +BW25113_1243 oppA 0 1295439 1297070 1 1657 0.05575980392156863 1632 91 "oligopeptide transporter subunit" +BW25113_1243__5prime oppA__5prime 0 1295241 1295438 1 813 0.22727272727272727 198 45 "oligopeptide transporter subunit" +BW25113_1243__3prime oppA__3prime 0 1297071 1297268 1 566 0.15151515151515152 198 30 "oligopeptide transporter subunit" +BW25113_1244 oppB 0 1297156 1298076 1 1341 0.08469055374592833 921 78 "oligopeptide transporter subunit" +BW25113_1244__5prime oppB__5prime 0 1296958 1297155 1 749 0.1717171717171717 198 34 "oligopeptide transporter subunit" +BW25113_1244__3prime oppB__3prime 0 1298077 1298274 1 150 0.06060606060606061 198 12 "oligopeptide transporter subunit" +BW25113_1245 oppC 0 1298091 1298999 1 809 0.05720572057205721 909 52 "oligopeptide transporter subunit" +BW25113_1245__5prime oppC__5prime 0 1297893 1298090 1 345 0.14646464646464646 198 29 "oligopeptide transporter subunit" +BW25113_1245__3prime oppC__3prime 0 1299000 1299197 1 112 0.04040404040404041 198 8 "oligopeptide transporter subunit" +BW25113_1245 oppC 0 1298476 1298777 1 191 0.03642384105960265 302 11 "1298475_1298777" +BW25113_1245__5prime oppC__5prime 0 1298278 1298475 1 228 0.09090909090909091 198 18 "1298475_1298777" +BW25113_1245__3prime oppC__3prime 0 1298778 1298975 1 144 0.045454545454545456 198 9 "1298475_1298777" +BW25113_1246 oppD 0 1299011 1300024 1 969 0.06903353057199212 1014 70 "oligopeptide transporter subunit" +BW25113_1246__5prime oppD__5prime 0 1298813 1299010 1 235 0.050505050505050504 198 10 "oligopeptide transporter subunit" +BW25113_1246__3prime oppD__3prime 0 1300025 1300222 1 296 0.11616161616161616 198 23 "oligopeptide transporter subunit" +1299498_1300693 1299498_1300693 0 1299499 1300693 1 1190 0.06527196652719665 1195 78 "1299498_1300693" +1299498_1300693__5prime 1299498_1300693__5prime 0 1299301 1299498 1 446 0.13636363636363635 198 27 "1299498_1300693" +1299498_1300693__3prime 1299498_1300693__3prime 0 1300694 1300891 1 91 0.03535353535353535 198 7 "1299498_1300693" +BW25113_1247 oppF 0 1300021 1301025 1 1101 0.06467661691542288 1005 65 "oligopeptide transporter subunit" +BW25113_1247__5prime oppF__5prime 0 1299823 1300020 1 160 0.05555555555555555 198 11 "oligopeptide transporter subunit" +BW25113_1247__3prime oppF__3prime 0 1301026 1301223 1 214 0.07575757575757576 198 15 "oligopeptide transporter subunit" +BW25113_1248 yciU 0 1301078 1301407 -1 302 0.06060606060606061 330 20 "UPF0263 family protein" +BW25113_1248__5prime yciU__5prime 0 1301408 1301605 -1 106 0.045454545454545456 198 9 "UPF0263 family protein" +BW25113_1248__3prime yciU__3prime 0 1300880 1301077 -1 250 0.08585858585858586 198 17 "UPF0263 family protein" +BW25113_1249 clsA 0 1301442 1302902 -1 1254 0.044490075290896644 1461 65 "cardiolipin synthase 1" +BW25113_1249__5prime clsA__5prime 0 1302903 1303100 -1 785 0.19696969696969696 198 39 "cardiolipin synthase 1" +BW25113_1249__3prime clsA__3prime 0 1301244 1301441 -1 134 0.04040404040404041 198 8 "cardiolipin synthase 1" +BW25113_4595 yciY 0 1303045 1303218 1 565 0.16666666666666666 174 29 "uncharacterized protein" +BW25113_4595__5prime yciY__5prime 0 1302847 1303044 1 516 0.13636363636363635 198 27 "uncharacterized protein" +BW25113_4595__3prime yciY__3prime 0 1303219 1303416 1 732 0.16161616161616163 198 32 "uncharacterized protein" +BW25113_1250 kch 0 1303273 1304526 -1 4158 0.145933014354067 1254 183 "voltage-gated potassium channel" +BW25113_1250__5prime kch__5prime 0 1304527 1304724 -1 272 0.0707070707070707 198 14 "voltage-gated potassium channel" +BW25113_1250__3prime kch__3prime 0 1303075 1303272 -1 658 0.16161616161616163 198 32 "voltage-gated potassium channel" +BW25113_1251 yciI 0 1304826 1305122 -1 729 0.05723905723905724 297 17 "putative DGPF domain-containing enzyme" +BW25113_1251__5prime yciI__5prime 0 1305123 1305320 -1 16 0.010101010101010102 198 2 "putative DGPF domain-containing enzyme" +BW25113_1251__3prime yciI__3prime 0 1304628 1304825 -1 217 0.050505050505050504 198 10 "putative DGPF domain-containing enzyme" +BW25113_1252 tonB 0 1305346 1306065 1 192 0.02361111111111111 720 17 "membrane spanning protein in TonB-ExbB-ExbD transport complex" +BW25113_1252__5prime tonB__5prime 0 1305148 1305345 1 16 0.010101010101010102 198 2 "membrane spanning protein in TonB-ExbB-ExbD transport complex" +BW25113_1252__3prime tonB__3prime 0 1306066 1306263 1 76 0.025252525252525252 198 5 "membrane spanning protein in TonB-ExbB-ExbD transport complex" +BW25113_1253 yciA 0 1306105 1306503 -1 303 0.05263157894736842 399 21 "acyl-CoA esterase" +BW25113_1253__5prime yciA__5prime 0 1306504 1306701 -1 252 0.0707070707070707 198 14 "acyl-CoA esterase" +BW25113_1253__3prime yciA__3prime 0 1305907 1306104 -1 17 0.015151515151515152 198 3 "acyl-CoA esterase" +BW25113_1254 yciB 0 1306608 1307147 -1 535 0.05555555555555555 540 30 "IspA family inner membrane protein" +BW25113_1254__5prime yciB__5prime 0 1307148 1307345 -1 518 0.07575757575757576 198 15 "IspA family inner membrane protein" +BW25113_1254__3prime yciB__3prime 0 1306410 1306607 -1 214 0.08585858585858586 198 17 "IspA family inner membrane protein" +BW25113_1255 yciC 0 1307177 1307920 -1 2233 0.12231182795698925 744 91 "UPF0259 family inner membrane protein" +BW25113_1255__5prime yciC__5prime 0 1307921 1308118 -1 450 0.1111111111111111 198 22 "UPF0259 family inner membrane protein" +BW25113_1255__3prime yciC__3prime 0 1306979 1307176 -1 99 0.03535353535353535 198 7 "UPF0259 family inner membrane protein" +BW25113_1256 ompW 0 1308277 1308915 1 4105 0.2269170579029734 639 145 "outer membrane protein W" +BW25113_1256__5prime ompW__5prime 0 1308079 1308276 1 373 0.08585858585858586 198 17 "outer membrane protein W" +BW25113_1256__3prime ompW__3prime 0 1308916 1309113 1 150 0.0707070707070707 198 14 "outer membrane protein W" +BW25113_1257 yciE 0 1308975 1309481 -1 1246 0.14792899408284024 507 75 "putative rubrerythrin/ferritin-like metal-binding protein" +BW25113_1257__5prime yciE__5prime 0 1309482 1309679 -1 311 0.08080808080808081 198 16 "putative rubrerythrin/ferritin-like metal-binding protein" +BW25113_1257__3prime yciE__3prime 0 1308777 1308974 -1 2686 0.3686868686868687 198 73 "putative rubrerythrin/ferritin-like metal-binding protein" +BW25113_1258 yciF 0 1309527 1310027 -1 2160 0.1936127744510978 501 97 "putative rubrerythrin/ferritin-like metal-binding protein" +BW25113_1258__5prime yciF__5prime 0 1310028 1310225 -1 889 0.1717171717171717 198 34 "putative rubrerythrin/ferritin-like metal-binding protein" +BW25113_1258__3prime yciF__3prime 0 1309329 1309526 -1 567 0.17676767676767677 198 35 "putative rubrerythrin/ferritin-like metal-binding protein" +BW25113_1259 yciG 0 1310113 1310292 -1 1221 0.19444444444444445 180 35 "KGG family protein" +BW25113_1259__5prime yciG__5prime 0 1310293 1310490 -1 245 0.045454545454545456 198 9 "KGG family protein" +BW25113_1259__3prime yciG__3prime 0 1309915 1310112 -1 381 0.15151515151515152 198 30 "KGG family protein" +BW25113_1260 trpA 0 1310673 1311479 -1 1609 0.08426270136307311 807 68 "tryptophan synthase and alpha subunit" +BW25113_1260__5prime trpA__5prime 0 1311480 1311677 -1 181 0.025252525252525252 198 5 "tryptophan synthase and alpha subunit" +BW25113_1260__3prime trpA__3prime 0 1310475 1310672 -1 264 0.050505050505050504 198 10 "tryptophan synthase and alpha subunit" +BW25113_1261 trpB 0 1311479 1312672 -1 1163 0.05862646566164154 1194 70 "tryptophan synthase and beta subunit" +BW25113_1261__5prime trpB__5prime 0 1312673 1312870 -1 192 0.030303030303030304 198 6 "tryptophan synthase and beta subunit" +BW25113_1261__3prime trpB__3prime 0 1311281 1311478 -1 108 0.03535353535353535 198 7 "tryptophan synthase and beta subunit" +BW25113_1262 trpC 0 1312684 1314045 -1 1892 0.07195301027900147 1362 98 "fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase" +BW25113_1262__5prime trpC__5prime 0 1314046 1314243 -1 59 0.020202020202020204 198 4 "fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase" +BW25113_1262__3prime trpC__3prime 0 1312486 1312683 -1 183 0.05555555555555555 198 11 "fused indole-3-glycerolphosphate synthetase/N-(5-phosphoribosyl)anthranilate isomerase" +BW25113_1263 trpD 0 1314046 1315641 -1 1332 0.042606516290726815 1596 68 "fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase" +BW25113_1263__5prime trpD__5prime 0 1315642 1315839 -1 252 0.10101010101010101 198 20 "fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase" +BW25113_1263__3prime trpD__3prime 0 1313848 1314045 -1 226 0.10101010101010101 198 20 "fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase" +BW25113_1264 trpE 0 1315641 1317203 -1 1718 0.060140754958413305 1563 94 "component I of anthranilate synthase" +BW25113_1264__5prime trpE__5prime 0 1317204 1317401 -1 161 0.05555555555555555 198 11 "component I of anthranilate synthase" +BW25113_1264__3prime trpE__3prime 0 1315443 1315640 -1 57 0.020202020202020204 198 4 "component I of anthranilate synthase" +BW25113_1265 trpL 0 1317295 1317339 -1 57 0.08888888888888889 45 4 "trp operon leader peptide" +BW25113_1265__5prime trpL__5prime 0 1317340 1317537 -1 269 0.045454545454545456 198 9 "trp operon leader peptide" +BW25113_1265__3prime trpL__3prime 0 1317097 1317294 -1 163 0.06060606060606061 198 12 "trp operon leader peptide" +BW25113_1266 yciV 0 1317477 1318358 1 720 0.048752834467120185 882 43 "PHP domain protein" +BW25113_1266__5prime yciV__5prime 0 1317279 1317476 1 304 0.050505050505050504 198 10 "PHP domain protein" +BW25113_1266__3prime yciV__3prime 0 1318359 1318556 1 51 0.020202020202020204 198 4 "PHP domain protein" +BW25113_1267 yciO 0 1318355 1318975 1 369 0.040257648953301126 621 25 "putative RNA binding protein" +BW25113_1267__5prime yciO__5prime 0 1318157 1318354 1 184 0.05555555555555555 198 11 "putative RNA binding protein" +BW25113_1267__3prime yciO__3prime 0 1318976 1319173 1 242 0.11616161616161616 198 23 "putative RNA binding protein" +BW25113_1268 yciQ 0 1319003 1320898 1 7132 0.15242616033755274 1896 289 "enhancer of membrane protein expression; putative inner membrane protein" +BW25113_1268__5prime yciQ__5prime 0 1318805 1319002 1 172 0.045454545454545456 198 9 "enhancer of membrane protein expression; putative inner membrane protein" +BW25113_1268__3prime yciQ__3prime 0 1320899 1321096 1 286 0.08080808080808081 198 16 "enhancer of membrane protein expression; putative inner membrane protein" +BW25113_1269 rluB 0 1321109 1321984 1 857 0.0502283105022831 876 44 "23S rRNA pseudouridine(2605) synthase" +BW25113_1269__5prime rluB__5prime 0 1320911 1321108 1 286 0.08080808080808081 198 16 "23S rRNA pseudouridine(2605) synthase" +BW25113_1269__3prime rluB__3prime 0 1321985 1322182 1 180 0.06060606060606061 198 12 "23S rRNA pseudouridine(2605) synthase" +1321993_1322012 1321993_1322012 0 1321994 1322012 1 0 0.0 19 0 "1321993_1322012" +1321993_1322012__5prime 1321993_1322012__5prime 0 1321796 1321993 1 63 0.030303030303030304 198 6 "1321993_1322012" +1321993_1322012__3prime 1321993_1322012__3prime 0 1322013 1322210 1 219 0.0707070707070707 198 14 "1321993_1322012" +BW25113_1270 btuR 0 1322024 1322614 -1 722 0.06937394247038917 591 41 "cob(I)yrinic acid a and c-diamide adenosyltransferase" +BW25113_1270__5prime btuR__5prime 0 1322615 1322812 -1 177 0.030303030303030304 198 6 "cob(I)yrinic acid a and c-diamide adenosyltransferase" +BW25113_1270__3prime btuR__3prime 0 1321826 1322023 -1 6 0.005050505050505051 198 1 "cob(I)yrinic acid a and c-diamide adenosyltransferase" +BW25113_1271 yciK 0 1322611 1323369 -1 543 0.039525691699604744 759 30 "putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase" +BW25113_1271__5prime yciK__5prime 0 1323370 1323567 -1 296 0.05555555555555555 198 11 "putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase" +BW25113_1271__3prime yciK__3prime 0 1322413 1322610 -1 241 0.06060606060606061 198 12 "putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase" +BW25113_1272 sohB 0 1323589 1324638 1 1808 0.06 1050 63 "inner membrane protein and S49 peptidase family protein" +BW25113_1272__5prime sohB__5prime 0 1323391 1323588 1 296 0.05555555555555555 198 11 "inner membrane protein and S49 peptidase family protein" +BW25113_1272__3prime sohB__3prime 0 1324639 1324836 1 225 0.045454545454545456 198 9 "inner membrane protein and S49 peptidase family protein" +BW25113_1273 yciN 0 1324674 1324925 -1 261 0.04365079365079365 252 11 "DUF2498 protein YciN" +BW25113_1273__5prime yciN__5prime 0 1324926 1325123 -1 96 0.025252525252525252 198 5 "DUF2498 protein YciN" +BW25113_1273__3prime yciN__3prime 0 1324476 1324673 -1 693 0.09595959595959595 198 19 "DUF2498 protein YciN" +BW25113_1274 topA 0 1325305 1327902 1 240 0.0050038491147036184 2598 13 "DNA topoisomerase I and omega subunit" +BW25113_1274__5prime topA__5prime 0 1325107 1325304 1 358 0.05555555555555555 198 11 "DNA topoisomerase I and omega subunit" +BW25113_1274__3prime topA__3prime 0 1327903 1328100 1 199 0.06565656565656566 198 13 "DNA topoisomerase I and omega subunit" +BW25113_1275 cysB 0 1328112 1329086 1 97 0.011282051282051283 975 11 "N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor" +BW25113_1275__5prime cysB__5prime 0 1327914 1328111 1 199 0.06565656565656566 198 13 "N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor" +BW25113_1275__3prime cysB__3prime 0 1329087 1329284 1 150 0.06060606060606061 198 12 "N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor" +BW25113_4522 ymiA 0 1329381 1329545 1 385 0.11515151515151516 165 19 "uncharacterized protein" +BW25113_4522__5prime ymiA__5prime 0 1329183 1329380 1 49 0.015151515151515152 198 3 "uncharacterized protein" +BW25113_4522__3prime ymiA__3prime 0 1329546 1329743 1 718 0.20707070707070707 198 41 "uncharacterized protein" +BW25113_4523 yciX 0 1329548 1329715 1 685 0.23214285714285715 168 39 "uncharacterized protein" +BW25113_4523__5prime yciX__5prime 0 1329350 1329547 1 432 0.1111111111111111 198 22 "uncharacterized protein" +BW25113_4523__3prime yciX__3prime 0 1329716 1329913 1 693 0.1414141414141414 198 28 "uncharacterized protein" +BW25113_1276 acnA 0 1330088 1332763 1 3249 0.05605381165919283 2676 150 "aconitate hydratase 1" +BW25113_1276__5prime acnA__5prime 0 1329890 1330087 1 510 0.07575757575757576 198 15 "aconitate hydratase 1" +BW25113_1276__3prime acnA__3prime 0 1332764 1332961 1 11 0.005050505050505051 198 1 "aconitate hydratase 1" +BW25113_1276 acnA 0 1331651 1331651 1 0 0.0 1 0 "1331650_1331651" +BW25113_1276__5prime acnA__5prime 0 1331453 1331650 1 83 0.050505050505050504 198 10 "1331650_1331651" +BW25113_1276__3prime acnA__3prime 0 1331652 1331849 1 290 0.06060606060606061 198 12 "1331650_1331651" +BW25113_1277 ribA 0 1332827 1333417 -1 0 0.0 591 0 "GTP cyclohydrolase II" +BW25113_1277__5prime ribA__5prime 0 1333418 1333615 -1 174 0.025252525252525252 198 5 "GTP cyclohydrolase II" +BW25113_1277__3prime ribA__3prime 0 1332629 1332826 -1 228 0.05555555555555555 198 11 "GTP cyclohydrolase II" +BW25113_1278 pgpB 0 1333587 1334351 1 444 0.026143790849673203 765 20 "phosphatidylglycerophosphatase B" +BW25113_1278__5prime pgpB__5prime 0 1333389 1333586 1 58 0.015151515151515152 198 3 "phosphatidylglycerophosphatase B" +BW25113_1278__3prime pgpB__3prime 0 1334352 1334549 1 0 0.0 198 0 "phosphatidylglycerophosphatase B" +BW25113_1279 yciS 0 1334500 1334808 1 95 0.022653721682847898 309 7 "DUF1049 family inner membrane protein and function unknown" +BW25113_1279__5prime yciS__5prime 0 1334302 1334499 1 0 0.0 198 0 "DUF1049 family inner membrane protein and function unknown" +BW25113_1279__3prime yciS__3prime 0 1334809 1335006 1 0 0.0 198 0 "DUF1049 family inner membrane protein and function unknown" +BW25113_1280 yciM 0 1334815 1335984 1 0 0.0 1170 0 "envelope integrity maintenance protein; EnvC-interacting protein" +BW25113_1280__5prime yciM__5prime 0 1334617 1334814 1 28 0.010101010101010102 198 2 "envelope integrity maintenance protein; EnvC-interacting protein" +BW25113_1280__3prime yciM__3prime 0 1335985 1336182 1 85 0.020202020202020204 198 4 "envelope integrity maintenance protein; EnvC-interacting protein" +BW25113_1281 pyrF 0 1336178 1336915 1 940 0.07723577235772358 738 57 '"orotidine-5''-phosphate decarboxylase"' +BW25113_1281__5prime pyrF__5prime 0 1335980 1336177 1 85 0.020202020202020204 198 4 '"orotidine-5''-phosphate decarboxylase"' +BW25113_1281__3prime pyrF__3prime 0 1336916 1337113 1 630 0.18181818181818182 198 36 '"orotidine-5''-phosphate decarboxylase"' +BW25113_1282 yciH 0 1336915 1337241 1 949 0.1559633027522936 327 51 "initiation factor function partial mimic and SUI1 family" +BW25113_1282__5prime yciH__5prime 0 1336717 1336914 1 222 0.08080808080808081 198 16 "initiation factor function partial mimic and SUI1 family" +BW25113_1282__3prime yciH__3prime 0 1337242 1337439 1 2034 0.2676767676767677 198 53 "initiation factor function partial mimic and SUI1 family" +BW25113_1283 osmB 0 1337367 1337585 -1 5616 0.3972602739726027 219 87 "lipoprotein" +BW25113_1283__5prime osmB__5prime 0 1337586 1337783 -1 638 0.11616161616161616 198 23 "lipoprotein" +BW25113_1283__3prime osmB__3prime 0 1337169 1337366 -1 324 0.09090909090909091 198 18 "lipoprotein" +BW25113_1284 yciT 0 1337854 1338603 -1 2013 0.124 750 93 "global regulator of transcription; DeoR family" +BW25113_1284__5prime yciT__5prime 0 1338604 1338801 -1 51 0.020202020202020204 198 4 "global regulator of transcription; DeoR family" +BW25113_1284__3prime yciT__3prime 0 1337656 1337853 -1 1012 0.16666666666666666 198 33 "global regulator of transcription; DeoR family" +BW25113_4596 yciZ 0 1338693 1338866 -1 83 0.05172413793103448 174 9 "uncharacterized protein" +BW25113_4596__5prime yciZ__5prime 0 1338867 1339064 -1 121 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_4596__3prime yciZ__3prime 0 1338495 1338692 -1 252 0.05555555555555555 198 11 "uncharacterized protein" +BW25113_1285 gmr 0 1339014 1340999 -1 3341 0.06243705941591138 1986 124 "cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability" +BW25113_1285__5prime gmr__5prime 0 1341000 1341197 -1 74 0.020202020202020204 198 4 "cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability" +BW25113_1285__3prime gmr__3prime 0 1338816 1339013 -1 112 0.06565656565656566 198 13 "cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability" +BW25113_4672 ymiB 0 1341053 1341157 1 0 0.0 105 0 "uncharacterized protein" +BW25113_4672__5prime ymiB__5prime 0 1340855 1341052 1 462 0.09595959595959595 198 19 "uncharacterized protein" +BW25113_4672__3prime ymiB__3prime 0 1341158 1341355 1 54 0.020202020202020204 198 4 "uncharacterized protein" +BW25113_1286 rnb 0 1341235 1343169 -1 1696 0.04806201550387597 1935 93 "ribonuclease II" +BW25113_1286__5prime rnb__5prime 0 1343170 1343367 -1 222 0.07575757575757576 198 15 "ribonuclease II" +BW25113_1286__3prime rnb__3prime 0 1341037 1341234 -1 10 0.005050505050505051 198 1 "ribonuclease II" +BW25113_1287 yciW 0 1343237 1344364 -1 1273 0.05230496453900709 1128 59 "putative oxidoreductase" +BW25113_1287__5prime yciW__5prime 0 1344365 1344562 -1 260 0.025252525252525252 198 5 "putative oxidoreductase" +BW25113_1287__3prime yciW__3prime 0 1343039 1343236 -1 108 0.05555555555555555 198 11 "putative oxidoreductase" +BW25113_1288 fabI 0 1344508 1345296 -1 5 0.0012674271229404308 789 1 "enoyl-[acyl-carrier-protein] reductase and NADH-dependent" +BW25113_1288__5prime fabI__5prime 0 1345297 1345494 -1 639 0.045454545454545456 198 9 "enoyl-[acyl-carrier-protein] reductase and NADH-dependent" +BW25113_1288__3prime fabI__3prime 0 1344310 1344507 -1 323 0.045454545454545456 198 9 "enoyl-[acyl-carrier-protein] reductase and NADH-dependent" +BW25113_1289 ycjD 0 1345664 1346017 -1 890 0.09887005649717515 354 35 "DUF559 family endonuclease-related protein" +BW25113_1289__5prime ycjD__5prime 0 1346018 1346215 -1 24 0.015151515151515152 198 3 "DUF559 family endonuclease-related protein" +BW25113_1289__3prime ycjD__3prime 0 1345466 1345663 -1 1291 0.15656565656565657 198 31 "DUF559 family endonuclease-related protein" +BW25113_1290 sapF 0 1346085 1346891 -1 606 0.04337050805452292 807 35 "antimicrobial peptide transport ABC system ATP-binding protein" +BW25113_1290__5prime sapF__5prime 0 1346892 1347089 -1 230 0.045454545454545456 198 9 "antimicrobial peptide transport ABC system ATP-binding protein" +BW25113_1290__3prime sapF__3prime 0 1345887 1346084 -1 46 0.04040404040404041 198 8 "antimicrobial peptide transport ABC system ATP-binding protein" +BW25113_1291 sapD 0 1346893 1347885 -1 1022 0.06042296072507553 993 60 "antimicrobial peptide transport ABC system ATP-binding protein" +BW25113_1291__5prime sapD__5prime 0 1347886 1348083 -1 115 0.05555555555555555 198 11 "antimicrobial peptide transport ABC system ATP-binding protein" +BW25113_1291__3prime sapD__3prime 0 1346695 1346892 -1 134 0.03535353535353535 198 7 "antimicrobial peptide transport ABC system ATP-binding protein" +BW25113_1292 sapC 0 1347885 1348775 -1 583 0.051627384960718295 891 46 "antimicrobial peptide transport ABC transporter permease" +BW25113_1292__5prime sapC__5prime 0 1348776 1348973 -1 158 0.045454545454545456 198 9 "antimicrobial peptide transport ABC transporter permease" +BW25113_1292__3prime sapC__3prime 0 1347687 1347884 -1 210 0.05555555555555555 198 11 "antimicrobial peptide transport ABC transporter permease" +BW25113_1293 sapB 0 1348762 1349727 -1 727 0.053830227743271224 966 52 "antimicrobial peptide transport ABC transporter permease" +BW25113_1293__5prime sapB__5prime 0 1349728 1349925 -1 43 0.025252525252525252 198 5 "antimicrobial peptide transport ABC transporter permease" +BW25113_1293__3prime sapB__3prime 0 1348564 1348761 -1 61 0.030303030303030304 198 6 "antimicrobial peptide transport ABC transporter permease" +BW25113_1294 sapA 0 1349724 1351367 -1 1218 0.040145985401459854 1644 66 "antimicrobial peptide transport ABC transporter periplasmic binding protein" +BW25113_1294__5prime sapA__5prime 0 1351368 1351565 -1 166 0.045454545454545456 198 9 "antimicrobial peptide transport ABC transporter periplasmic binding protein" +BW25113_1294__3prime sapA__3prime 0 1349526 1349723 -1 205 0.050505050505050504 198 10 "antimicrobial peptide transport ABC transporter periplasmic binding protein" +1351615_1351649 1351615_1351649 0 1351616 1351649 1 0 0.0 34 0 "1351615_1351649" +1351615_1351649__5prime 1351615_1351649__5prime 0 1351418 1351615 1 194 0.050505050505050504 198 10 "1351615_1351649" +1351615_1351649__3prime 1351615_1351649__3prime 0 1351650 1351847 1 663 0.06565656565656566 198 13 "1351615_1351649" +BW25113_1295 ymjA 0 1351680 1351925 -1 418 0.032520325203252036 246 8 "DUF2543 family protein" +BW25113_1295__5prime ymjA__5prime 0 1351926 1352123 -1 457 0.12626262626262627 198 25 "DUF2543 family protein" +BW25113_1295__3prime ymjA__3prime 0 1351482 1351679 -1 316 0.050505050505050504 198 10 "DUF2543 family protein" +1352026_1352056 1352026_1352056 0 1352027 1352056 1 22 0.1 30 3 "1352026_1352056" +1352026_1352056__5prime 1352026_1352056__5prime 0 1351829 1352026 1 272 0.08585858585858586 198 17 "1352026_1352056" +1352026_1352056__3prime 1352026_1352056__3prime 0 1352057 1352254 1 289 0.06565656565656566 198 13 "1352026_1352056" +BW25113_1296 puuP 0 1352059 1353444 -1 1369 0.046176046176046176 1386 64 "putrescine importer" +BW25113_1296__5prime puuP__5prime 0 1353445 1353642 -1 395 0.06060606060606061 198 12 "putrescine importer" +BW25113_1296__3prime puuP__3prime 0 1351861 1352058 -1 294 0.10101010101010101 198 20 "putrescine importer" +BW25113_1297 puuA 0 1353747 1355165 -1 2232 0.06694855532064835 1419 95 "glutamate--putrescine ligase" +BW25113_1297__5prime puuA__5prime 0 1355166 1355363 -1 0 0.0 198 0 "glutamate--putrescine ligase" +BW25113_1297__3prime puuA__3prime 0 1353549 1353746 -1 164 0.06060606060606061 198 12 "glutamate--putrescine ligase" +BW25113_1298 puuD 0 1355377 1356141 1 1028 0.058823529411764705 765 45 "gamma-glutamyl-gamma-aminobutyrate hydrolase" +BW25113_1298__5prime puuD__5prime 0 1355179 1355376 1 0 0.0 198 0 "gamma-glutamyl-gamma-aminobutyrate hydrolase" +BW25113_1298__3prime puuD__3prime 0 1356142 1356339 1 164 0.045454545454545456 198 9 "gamma-glutamyl-gamma-aminobutyrate hydrolase" +BW25113_1299 puuR 0 1356168 1356725 1 925 0.06630824372759857 558 37 "repressor for the divergent puu operons and putrescine inducible" +BW25113_1299__5prime puuR__5prime 0 1355970 1356167 1 541 0.10606060606060606 198 21 "repressor for the divergent puu operons and putrescine inducible" +BW25113_1299__3prime puuR__3prime 0 1356726 1356923 1 256 0.03535353535353535 198 7 "repressor for the divergent puu operons and putrescine inducible" +BW25113_1300 puuC 0 1357000 1358487 1 2464 0.07190860215053764 1488 107 "gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase" +BW25113_1300__5prime puuC__5prime 0 1356802 1356999 1 349 0.07575757575757576 198 15 "gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase" +BW25113_1300__3prime puuC__3prime 0 1358488 1358685 1 34 0.015151515151515152 198 3 "gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase" +BW25113_1301 puuB 0 1358489 1359769 1 1326 0.05230288836846214 1281 67 "gamma-glutamylputrescine oxidoreductase" +BW25113_1301__5prime puuB__5prime 0 1358291 1358488 1 467 0.10606060606060606 198 21 "gamma-glutamylputrescine oxidoreductase" +BW25113_1301__3prime puuB__3prime 0 1359770 1359967 1 518 0.10606060606060606 198 21 "gamma-glutamylputrescine oxidoreductase" +BW25113_1302 puuE 0 1359807 1361072 1 1849 0.06714060031595577 1266 85 "4-aminobutyrate aminotransferase and PLP-dependent" +BW25113_1302__5prime puuE__5prime 0 1359609 1359806 1 147 0.045454545454545456 198 9 "4-aminobutyrate aminotransferase and PLP-dependent" +BW25113_1302__3prime puuE__3prime 0 1361073 1361270 1 465 0.08585858585858586 198 17 "4-aminobutyrate aminotransferase and PLP-dependent" +1361089_1361170 1361089_1361170 0 1361090 1361170 1 199 0.12345679012345678 81 10 "1361089_1361170" +1361089_1361170__5prime 1361089_1361170__5prime 0 1360892 1361089 1 250 0.03535353535353535 198 7 "1361089_1361170" +1361089_1361170__3prime 1361089_1361170__3prime 0 1361171 1361368 1 266 0.03535353535353535 198 7 "1361089_1361170" +BW25113_1303 pspF 0 1361192 1362169 -1 1531 0.05725971370143149 978 56 "psp operon transcriptional activator" +BW25113_1303__5prime pspF__5prime 0 1362170 1362367 -1 111 0.030303030303030304 198 6 "psp operon transcriptional activator" +BW25113_1303__3prime pspF__3prime 0 1360994 1361191 -1 344 0.05555555555555555 198 11 "psp operon transcriptional activator" +1361464_1361622 1361464_1361622 0 1361465 1361622 1 469 0.056962025316455694 158 9 "1361464_1361622" +1361464_1361622__5prime 1361464_1361622__5prime 0 1361267 1361464 1 162 0.015151515151515152 198 3 "1361464_1361622" +1361464_1361622__3prime 1361464_1361622__3prime 0 1361623 1361820 1 138 0.050505050505050504 198 10 "1361464_1361622" +BW25113_1304 pspA 0 1362336 1363004 1 568 0.04633781763826607 669 31 "regulatory protein for phage-shock-protein operon" +BW25113_1304__5prime pspA__5prime 0 1362138 1362335 1 127 0.03535353535353535 198 7 "regulatory protein for phage-shock-protein operon" +BW25113_1304__3prime pspA__3prime 0 1363005 1363202 1 438 0.09090909090909091 198 18 "regulatory protein for phage-shock-protein operon" +BW25113_1305 pspB 0 1363058 1363282 1 523 0.08444444444444445 225 19 "psp operon transcription co-activator" +BW25113_1305__5prime pspB__5prime 0 1362860 1363057 1 143 0.050505050505050504 198 10 "psp operon transcription co-activator" +BW25113_1305__3prime pspB__3prime 0 1363283 1363480 1 190 0.0707070707070707 198 14 "psp operon transcription co-activator" +BW25113_1306 pspC 0 1363282 1363641 1 450 0.08611111111111111 360 31 "psp operon transcription co-activator" +BW25113_1306__5prime pspC__5prime 0 1363084 1363281 1 363 0.07575757575757576 198 15 "psp operon transcription co-activator" +BW25113_1306__3prime pspC__3prime 0 1363642 1363839 1 46 0.025252525252525252 198 5 "psp operon transcription co-activator" +BW25113_1307 pspD 0 1363650 1363871 1 46 0.02252252252252252 222 5 "peripheral inner membrane phage-shock protein" +BW25113_1307__5prime pspD__5prime 0 1363452 1363649 1 260 0.08585858585858586 198 17 "peripheral inner membrane phage-shock protein" +BW25113_1307__3prime pspD__3prime 0 1363872 1364069 1 517 0.16161616161616163 198 32 "peripheral inner membrane phage-shock protein" +BW25113_1308 pspE 0 1363946 1364260 1 2215 0.29523809523809524 315 93 "thiosulfate:cyanide sulfurtransferase (rhodanese)" +BW25113_1308__5prime pspE__5prime 0 1363748 1363945 1 36 0.020202020202020204 198 4 "thiosulfate:cyanide sulfurtransferase (rhodanese)" +BW25113_1308__3prime pspE__3prime 0 1364261 1364458 1 242 0.12121212121212122 198 24 "thiosulfate:cyanide sulfurtransferase (rhodanese)" +BW25113_1309 ycjM 0 1364473 1366152 1 7542 0.17202380952380952 1680 289 "alpha amylase catalytic domain family protein" +BW25113_1309__5prime ycjM__5prime 0 1364275 1364472 1 219 0.1111111111111111 198 22 "alpha amylase catalytic domain family protein" +BW25113_1309__3prime ycjM__3prime 0 1366153 1366350 1 869 0.14646464646464646 198 29 "alpha amylase catalytic domain family protein" +BW25113_1310 ycjN 0 1366166 1367458 1 3591 0.08816705336426914 1293 114 "putative ABC superfamily sugar transporter periplasmic-binding protein" +BW25113_1310__5prime ycjN__5prime 0 1365968 1366165 1 482 0.07575757575757576 198 15 "putative ABC superfamily sugar transporter periplasmic-binding protein" +BW25113_1310__3prime ycjN__3prime 0 1367459 1367656 1 497 0.08585858585858586 198 17 "putative ABC superfamily sugar transporter periplasmic-binding protein" +BW25113_1311 ycjO 0 1367479 1368360 1 1468 0.06235827664399093 882 55 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_1311__5prime ycjO__5prime 0 1367281 1367478 1 601 0.09090909090909091 198 18 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_1311__3prime ycjO__3prime 0 1368361 1368558 1 246 0.08080808080808081 198 16 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_1312 ycjP 0 1368347 1369189 1 1803 0.06998813760379596 843 59 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_1312__5prime ycjP__5prime 0 1368149 1368346 1 266 0.045454545454545456 198 9 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_1312__3prime ycjP__3prime 0 1369190 1369387 1 302 0.05555555555555555 198 11 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_1313 ycjQ 0 1369220 1370272 1 1203 0.04653371320037987 1053 49 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1313__5prime ycjQ__5prime 0 1369022 1369219 1 314 0.050505050505050504 198 10 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1313__3prime ycjQ__3prime 0 1370273 1370470 1 0 0.0 198 0 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1314 ycjR 0 1370291 1371079 1 1209 0.060836501901140684 789 48 "putative TIM alpha/beta barrel enzyme" +BW25113_1314__5prime ycjR__5prime 0 1370093 1370290 1 220 0.03535353535353535 198 7 "putative TIM alpha/beta barrel enzyme" +BW25113_1314__3prime ycjR__3prime 0 1371080 1371277 1 291 0.05555555555555555 198 11 "putative TIM alpha/beta barrel enzyme" +BW25113_1315 ycjS 0 1371089 1372144 1 1321 0.06818181818181818 1056 72 "putative NADH-binding oxidoreductase" +BW25113_1315__5prime ycjS__5prime 0 1370891 1371088 1 695 0.12121212121212122 198 24 "putative NADH-binding oxidoreductase" +BW25113_1315__3prime ycjS__3prime 0 1372145 1372342 1 228 0.06060606060606061 198 12 "putative NADH-binding oxidoreductase" +BW25113_1316 ycjT 0 1372141 1374408 1 3110 0.062169312169312166 2268 141 "putative family 65 glycosyl hydrolase" +BW25113_1316__5prime ycjT__5prime 0 1371943 1372140 1 226 0.08585858585858586 198 17 "putative family 65 glycosyl hydrolase" +BW25113_1316__3prime ycjT__3prime 0 1374409 1374606 1 100 0.04040404040404041 198 8 "putative family 65 glycosyl hydrolase" +BW25113_1317 ycjU 0 1374405 1375064 1 735 0.051515151515151514 660 34 "beta-phosphoglucomutase" +BW25113_1317__5prime ycjU__5prime 0 1374207 1374404 1 746 0.08585858585858586 198 17 "beta-phosphoglucomutase" +BW25113_1317__3prime ycjU__3prime 0 1375065 1375262 1 183 0.06060606060606061 198 12 "beta-phosphoglucomutase" +BW25113_4524 ycjV 0 1375078 1376159 1 3375 0.13031423290203328 1082 141 "1375077_1376159" +BW25113_4524__5prime ycjV__5prime 0 1374880 1375077 1 274 0.04040404040404041 198 8 "1375077_1376159" +BW25113_4524__3prime ycjV__3prime 0 1376160 1376357 1 4168 0.41919191919191917 198 83 "1375077_1376159" +BW25113_1319 ompG 0 1376204 1377109 1 10449 0.2913907284768212 906 264 "outer membrane porin G" +BW25113_1319__5prime ompG__5prime 0 1376006 1376203 1 2108 0.25252525252525254 198 50 "outer membrane porin G" +BW25113_1319__3prime ompG__3prime 0 1377110 1377307 1 594 0.15151515151515152 198 30 "outer membrane porin G" +1377123_1377197 1377123_1377197 0 1377124 1377197 1 150 0.1891891891891892 74 14 "1377123_1377197" +1377123_1377197__5prime 1377123_1377197__5prime 0 1376926 1377123 1 907 0.16666666666666666 198 33 "1377123_1377197" +1377123_1377197__3prime 1377123_1377197__3prime 0 1377198 1377395 1 1103 0.20202020202020202 198 40 "1377123_1377197" +BW25113_1320 ycjW 0 1377220 1378218 -1 5907 0.1871871871871872 999 187 "LacI family putative transcriptional repressor" +BW25113_1320__5prime ycjW__5prime 0 1378219 1378416 -1 675 0.10606060606060606 198 21 "LacI family putative transcriptional repressor" +BW25113_1320__3prime ycjW__3prime 0 1377022 1377219 -1 542 0.14646464646464646 198 29 "LacI family putative transcriptional repressor" +BW25113_1321 ycjX 0 1378374 1379771 1 2351 0.08297567954220315 1398 116 "DUF463 family protein and putative P-loop NTPase" +BW25113_1321__5prime ycjX__5prime 0 1378176 1378373 1 615 0.13636363636363635 198 27 "DUF463 family protein and putative P-loop NTPase" +BW25113_1321__3prime ycjX__3prime 0 1379772 1379969 1 240 0.05555555555555555 198 11 "DUF463 family protein and putative P-loop NTPase" +BW25113_1322 ycjF 0 1379768 1380829 1 1697 0.060263653483992465 1062 64 "UPF0283 family inner membrane protein" +BW25113_1322__5prime ycjF__5prime 0 1379570 1379767 1 64 0.03535353535353535 198 7 "UPF0283 family inner membrane protein" +BW25113_1322__3prime ycjF__3prime 0 1380830 1381027 1 11 0.010101010101010102 198 2 "UPF0283 family inner membrane protein" +BW25113_1323 tyrR 0 1380977 1382518 1 1434 0.05188067444876784 1542 80 "aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase" +BW25113_1323__5prime tyrR__5prime 0 1380779 1380976 1 15 0.015151515151515152 198 3 "aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase" +BW25113_1323__3prime tyrR__3prime 0 1382519 1382716 1 327 0.10606060606060606 198 21 "aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase" +1382528_1382553 1382528_1382553 0 1382529 1382553 1 83 0.12 25 3 "1382528_1382553" +1382528_1382553__5prime 1382528_1382553__5prime 0 1382331 1382528 1 124 0.030303030303030304 198 6 "1382528_1382553" +1382528_1382553__3prime 1382528_1382553__3prime 0 1382554 1382751 1 322 0.11616161616161616 198 23 "1382528_1382553" +BW25113_1324 tpx 0 1382562 1383068 -1 1059 0.09467455621301775 507 48 "lipid hydroperoxide peroxidase" +BW25113_1324__5prime tpx__5prime 0 1383069 1383266 -1 203 0.045454545454545456 198 9 "lipid hydroperoxide peroxidase" +BW25113_1324__3prime tpx__3prime 0 1382364 1382561 -1 207 0.045454545454545456 198 9 "lipid hydroperoxide peroxidase" +BW25113_1325 ycjG 0 1383187 1384152 1 1294 0.051759834368530024 966 50 "L-Ala-D/L-Glu epimerase" +BW25113_1325__5prime ycjG__5prime 0 1382989 1383186 1 323 0.030303030303030304 198 6 "L-Ala-D/L-Glu epimerase" +BW25113_1325__3prime ycjG__3prime 0 1384153 1384350 1 218 0.03535353535353535 198 7 "L-Ala-D/L-Glu epimerase" +BW25113_1326 mpaA 0 1384127 1384855 -1 1097 0.05212620027434842 729 38 "murein peptide amidase A" +BW25113_1326__5prime mpaA__5prime 0 1384856 1385053 -1 271 0.05555555555555555 198 11 "murein peptide amidase A" +BW25113_1326__3prime mpaA__3prime 0 1383929 1384126 -1 319 0.05555555555555555 198 11 "murein peptide amidase A" +BW25113_4525 ymjC 0 1384982 1385119 -1 115 0.014492753623188406 138 2 "1384981_1385119" +BW25113_4525__5prime ymjC__5prime 0 1385120 1385317 -1 871 0.1414141414141414 198 28 "1384981_1385119" +BW25113_4525__3prime ymjC__3prime 0 1384784 1384981 -1 225 0.06565656565656566 198 13 "1384981_1385119" +BW25113_4673 ymjD 0 1385125 1385190 -1 56 0.07575757575757576 66 5 "1385124_1385190" +BW25113_4673__5prime ymjD__5prime 0 1385191 1385388 -1 1036 0.18181818181818182 198 36 "1385124_1385190" +BW25113_4673__3prime ymjD__3prime 0 1384927 1385124 -1 121 0.015151515151515152 198 3 "1385124_1385190" +BW25113_1327 ycjY 0 1385190 1386110 -1 3370 0.12052117263843648 921 111 "S9 homolog non-peptidase family protein" +BW25113_1327__5prime ycjY__5prime 0 1386111 1386308 -1 406 0.12121212121212122 198 24 "S9 homolog non-peptidase family protein" +BW25113_1327__3prime ycjY__3prime 0 1384992 1385189 -1 171 0.03535353535353535 198 7 "S9 homolog non-peptidase family protein" +BW25113_1328 pgrR 0 1386248 1387147 1 3098 0.16777777777777778 900 151 "murein peptide degradation regulator" +BW25113_1328__5prime pgrR__5prime 0 1386050 1386247 1 146 0.06060606060606061 198 12 "murein peptide degradation regulator" +BW25113_1328__3prime pgrR__3prime 0 1387148 1387345 1 407 0.1111111111111111 198 22 "murein peptide degradation regulator" +BW25113_1329 mppA 0 1387484 1389097 1 5917 0.15055762081784388 1614 243 "murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit" +BW25113_1329__5prime mppA__5prime 0 1387286 1387483 1 326 0.08585858585858586 198 17 "murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit" +BW25113_1329__3prime mppA__3prime 0 1389098 1389295 1 3699 0.4393939393939394 198 87 "murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit" +BW25113_1330 ynaI 0 1389148 1390179 -1 5942 0.2131782945736434 1032 220 "mechanosensitive channel protein and very small conductance" +BW25113_1330__5prime ynaI__5prime 0 1390180 1390377 -1 795 0.25252525252525254 198 50 "mechanosensitive channel protein and very small conductance" +BW25113_1330__3prime ynaI__3prime 0 1388950 1389147 -1 2473 0.3383838383838384 198 67 "mechanosensitive channel protein and very small conductance" +BW25113_1331 insH1 0 1390333 1391349 1 2209 0.1848574237954769 1017 188 "IS5 transposase and trans-activator" +BW25113_1331__5prime insH1__5prime 0 1390135 1390332 1 583 0.18181818181818182 198 36 "IS5 transposase and trans-activator" +BW25113_1331__3prime insH1__3prime 0 1391350 1391547 1 209 0.0707070707070707 198 14 "IS5 transposase and trans-activator" +BW25113_1332 ynaJ 0 1391622 1391879 1 341 0.07751937984496124 258 20 "DUF2534 family putative inner membrane protein" +BW25113_1332__5prime ynaJ__5prime 0 1391424 1391621 1 206 0.050505050505050504 198 10 "DUF2534 family putative inner membrane protein" +BW25113_1332__3prime ynaJ__3prime 0 1391880 1392077 1 413 0.0707070707070707 198 14 "DUF2534 family putative inner membrane protein" +BW25113_1333 uspE 0 1391929 1392879 -1 1078 0.060988433228180865 951 58 "stress-induced protein" +BW25113_1333__5prime uspE__5prime 0 1392880 1393077 -1 108 0.030303030303030304 198 6 "stress-induced protein" +BW25113_1333__3prime uspE__3prime 0 1391731 1391928 -1 219 0.06565656565656566 198 13 "stress-induced protein" +BW25113_1334 fnr 0 1393031 1393783 -1 473 0.041168658698539175 753 31 "oxygen-sensing anaerobic growth regulon transcriptional regulator; autorepressor" +BW25113_1334__5prime fnr__5prime 0 1393784 1393981 -1 8 0.005050505050505051 198 1 "oxygen-sensing anaerobic growth regulon transcriptional regulator; autorepressor" +BW25113_1334__3prime fnr__3prime 0 1392833 1393030 -1 192 0.045454545454545456 198 9 "oxygen-sensing anaerobic growth regulon transcriptional regulator; autorepressor" +BW25113_1335 ogt 0 1393978 1394493 -1 309 0.04844961240310078 516 25 "O-6-alkylguanine-DNA:cysteine-protein methyltransferase" +BW25113_1335__5prime ogt__5prime 0 1394494 1394691 -1 245 0.07575757575757576 198 15 "O-6-alkylguanine-DNA:cysteine-protein methyltransferase" +BW25113_1335__3prime ogt__3prime 0 1393780 1393977 -1 8 0.005050505050505051 198 1 "O-6-alkylguanine-DNA:cysteine-protein methyltransferase" +BW25113_1336 abgT 0 1394504 1396030 -1 1183 0.04518664047151277 1527 69 "p-aminobenzoyl-glutamate transporter; membrane protein" +BW25113_1336__5prime abgT__5prime 0 1396031 1396228 -1 128 0.04040404040404041 198 8 "p-aminobenzoyl-glutamate transporter; membrane protein" +BW25113_1336__3prime abgT__3prime 0 1394306 1394503 -1 102 0.045454545454545456 198 9 "p-aminobenzoyl-glutamate transporter; membrane protein" +1396043_1397238 1396043_1397238 0 1396044 1397238 1 723 0.035146443514644354 1195 42 "1396043_1397238" +1396043_1397238__5prime 1396043_1397238__5prime 0 1395846 1396043 1 80 0.020202020202020204 198 4 "1396043_1397238" +1396043_1397238__3prime 1396043_1397238__3prime 0 1397239 1397436 1 105 0.050505050505050504 198 10 "1396043_1397238" +BW25113_1337 abgB 0 1396067 1397512 -1 842 0.035961272475795295 1446 52 "p-aminobenzoyl-glutamate hydrolase and B subunit" +BW25113_1337__5prime abgB__5prime 0 1397513 1397710 -1 162 0.05555555555555555 198 11 "p-aminobenzoyl-glutamate hydrolase and B subunit" +BW25113_1337__3prime abgB__3prime 0 1395869 1396066 -1 91 0.025252525252525252 198 5 "p-aminobenzoyl-glutamate hydrolase and B subunit" +BW25113_1338 abgA 0 1397512 1398822 -1 1696 0.07398932112890923 1311 97 "p-aminobenzoyl-glutamate hydrolase and A subunit" +BW25113_1338__5prime abgA__5prime 0 1398823 1399020 -1 33 0.020202020202020204 198 4 "p-aminobenzoyl-glutamate hydrolase and A subunit" +BW25113_1338__3prime abgA__3prime 0 1397314 1397511 -1 95 0.030303030303030304 198 6 "p-aminobenzoyl-glutamate hydrolase and A subunit" +BW25113_1339 abgR 0 1398998 1399906 1 1805 0.0814081408140814 909 74 "putative DNA-binding transcriptional regulator of abgABT operon" +BW25113_1339__5prime abgR__5prime 0 1398800 1398997 1 33 0.020202020202020204 198 4 "putative DNA-binding transcriptional regulator of abgABT operon" +BW25113_1339__3prime abgR__3prime 0 1399907 1400104 1 250 0.045454545454545456 198 9 "putative DNA-binding transcriptional regulator of abgABT operon" +BW25113_4426 mcaS 0 1399913 1400008 -1 250 0.09375 96 9 "motility and biofilm regulator sRNA" +BW25113_4426__5prime mcaS__5prime 0 1400009 1400206 -1 65 0.030303030303030304 198 6 "motility and biofilm regulator sRNA" +BW25113_4426__3prime mcaS__3prime 0 1399715 1399912 -1 197 0.045454545454545456 198 9 "motility and biofilm regulator sRNA" +BW25113_1340 smrA 0 1400236 1400799 1 207 0.02304964539007092 564 13 "DNA endonuclease" +BW25113_1340__5prime smrA__5prime 0 1400038 1400235 1 65 0.030303030303030304 198 6 "DNA endonuclease" +BW25113_1340__3prime smrA__3prime 0 1400800 1400997 1 330 0.06565656565656566 198 13 "DNA endonuclease" +BW25113_1341 ydaM 0 1400820 1402052 -1 3205 0.10218978102189781 1233 126 "diguanylate cyclase and csgD regulator" +BW25113_1341__5prime ydaM__5prime 0 1402053 1402250 -1 59 0.020202020202020204 198 4 "diguanylate cyclase and csgD regulator" +BW25113_1341__3prime ydaM__3prime 0 1400622 1400819 -1 374 0.06565656565656566 198 13 "diguanylate cyclase and csgD regulator" +BW25113_1342 ydaN 0 1402307 1403290 1 2395 0.11077235772357724 984 109 "putative Zn(II) transporter" +BW25113_1342__5prime ydaN__5prime 0 1402109 1402306 1 334 0.09595959595959595 198 19 "putative Zn(II) transporter" +BW25113_1342__3prime ydaN__3prime 0 1403291 1403488 1 68 0.030303030303030304 198 6 "putative Zn(II) transporter" +BW25113_4699 fnrS 0 1403386 1403507 1 55 0.040983606557377046 122 5 "FNR-activated anaerobic sRNA antisense regulator down regulates cydDC and metE and sodA and sodB and Hfq-dependent; mediates negative FNR regulation" +BW25113_4699__5prime fnrS__5prime 0 1403188 1403385 1 33 0.010101010101010102 198 2 "FNR-activated anaerobic sRNA antisense regulator down regulates cydDC and metE and sodA and sodB and Hfq-dependent; mediates negative FNR regulation" +BW25113_4699__3prime fnrS__3prime 0 1403508 1403705 1 218 0.08080808080808081 198 16 "FNR-activated anaerobic sRNA antisense regulator down regulates cydDC and metE and sodA and sodB and Hfq-dependent; mediates negative FNR regulation" +BW25113_1343 dbpA 0 1403768 1405141 1 1019 0.040756914119359534 1374 56 "ATP-dependent RNA helicase and specific for 23S rRNA" +BW25113_1343__5prime dbpA__5prime 0 1403570 1403767 1 251 0.08585858585858586 198 17 "ATP-dependent RNA helicase and specific for 23S rRNA" +BW25113_1343__3prime dbpA__3prime 0 1405142 1405339 1 120 0.03535353535353535 198 7 "ATP-dependent RNA helicase and specific for 23S rRNA" +1405189_1405226 1405189_1405226 0 1405190 1405226 1 0 0.0 37 0 "1405189_1405226" +1405189_1405226__5prime 1405189_1405226__5prime 0 1404992 1405189 1 168 0.03535353535353535 198 7 "1405189_1405226" +1405189_1405226__3prime 1405189_1405226__3prime 0 1405227 1405424 1 333 0.06565656565656566 198 13 "1405189_1405226" +BW25113_1344 ttcA 0 1405270 1406205 -1 1516 0.06944444444444445 936 65 "tRNA 2-thiocytidine biosynthesis protein" +BW25113_1344__5prime ttcA__5prime 0 1406206 1406403 -1 0 0.0 198 0 "tRNA 2-thiocytidine biosynthesis protein" +BW25113_1344__3prime ttcA__3prime 0 1405072 1405269 -1 110 0.020202020202020204 198 4 "tRNA 2-thiocytidine biosynthesis protein" +1406155_1429215 1406155_1429215 0 1406156 1429215 1 66474 0.10884648742411102 23060 2510 "1406155_1429215" +1406155_1429215__5prime 1406155_1429215__5prime 0 1405958 1406155 1 427 0.1111111111111111 198 22 "1406155_1429215" +1406155_1429215__3prime 1406155_1429215__3prime 0 1429216 1429413 1 38 0.015151515151515152 198 3 "1406155_1429215" +BW25113_1345 intR 0 1406257 1407492 -1 5902 0.1448220064724919 1236 179 "Rac prophage; integrase" +BW25113_1345__5prime intR__5prime 0 1407493 1407690 -1 1474 0.2777777777777778 198 55 "Rac prophage; integrase" +BW25113_1345__3prime intR__3prime 0 1406059 1406256 -1 148 0.010101010101010102 198 2 "Rac prophage; integrase" +BW25113_1346 ydaQ 0 1407494 1407709 -1 1474 0.25462962962962965 216 55 "Rac prophage; conserved protein" +BW25113_1346__5prime ydaQ__5prime 0 1407710 1407907 -1 154 0.050505050505050504 198 10 "Rac prophage; conserved protein" +BW25113_1346__3prime ydaQ__3prime 0 1407296 1407493 -1 126 0.0707070707070707 198 14 "Rac prophage; conserved protein" +BW25113_1347 rcbA 0 1407788 1407997 -1 160 0.02857142857142857 210 6 "double-strand break reduction protein and Rac prophage" +BW25113_1347__5prime rcbA__5prime 0 1407998 1408195 -1 106 0.050505050505050504 198 10 "double-strand break reduction protein and Rac prophage" +BW25113_1347__3prime rcbA__3prime 0 1407590 1407787 -1 951 0.22727272727272727 198 45 "double-strand break reduction protein and Rac prophage" +BW25113_1348 ralR 0 1407990 1408184 -1 106 0.05128205128205128 195 10 "Rac prophage; restriction alleviation protein" +BW25113_1348__5prime ralR__5prime 0 1408185 1408382 -1 266 0.10101010101010101 198 20 "Rac prophage; restriction alleviation protein" +BW25113_1348__3prime ralR__3prime 0 1407792 1407989 -1 160 0.030303030303030304 198 6 "Rac prophage; restriction alleviation protein" +BW25113_1349 recT 0 1408241 1409050 -1 1313 0.11851851851851852 810 96 "Rac prophage; recombination and repair protein" +BW25113_1349__5prime recT__5prime 0 1409051 1409248 -1 170 0.07575757575757576 198 15 "Rac prophage; recombination and repair protein" +BW25113_1349__3prime recT__3prime 0 1408043 1408240 -1 252 0.08585858585858586 198 17 "Rac prophage; recombination and repair protein" +BW25113_1350 recE 0 1409043 1411643 -1 2906 0.06151480199923107 2601 160 '"Rac prophage; exonuclease VIII and 5''-> 3'' specific dsDNA exonuclease"' +BW25113_1350__5prime recE__5prime 0 1411644 1411841 -1 548 0.08080808080808081 198 16 '"Rac prophage; exonuclease VIII and 5''-> 3'' specific dsDNA exonuclease"' +BW25113_1350__3prime recE__3prime 0 1408845 1409042 -1 284 0.10101010101010101 198 20 '"Rac prophage; exonuclease VIII and 5''-> 3'' specific dsDNA exonuclease"' +BW25113_1351 racC 0 1411745 1412020 -1 455 0.13043478260869565 276 36 "Rac prophage; uncharacterized protein" +BW25113_1351__5prime racC__5prime 0 1412021 1412218 -1 48 0.03535353535353535 198 7 "Rac prophage; uncharacterized protein" +BW25113_1351__3prime racC__3prime 0 1411547 1411744 -1 697 0.11616161616161616 198 23 "Rac prophage; uncharacterized protein" +BW25113_4526 ydaE 0 1412095 1412265 -1 84 0.06432748538011696 171 11 "Rac prophage; conserved protein" +BW25113_4526__5prime ydaE__5prime 0 1412266 1412463 -1 194 0.08080808080808081 198 16 "Rac prophage; conserved protein" +BW25113_4526__3prime ydaE__3prime 0 1411897 1412094 -1 319 0.12121212121212122 198 24 "Rac prophage; conserved protein" +BW25113_1352 kilR 0 1412265 1412486 -1 194 0.07207207207207207 222 16 "Rac prophage; inhibitor of ftsZ and killing protein" +BW25113_1352__5prime kilR__5prime 0 1412487 1412684 -1 686 0.18181818181818182 198 36 "Rac prophage; inhibitor of ftsZ and killing protein" +BW25113_1352__3prime kilR__3prime 0 1412067 1412264 -1 84 0.05555555555555555 198 11 "Rac prophage; inhibitor of ftsZ and killing protein" +BW25113_1353 sieB 0 1412928 1413416 1 338 0.044989775051124746 489 22 "Rac prophage; phage superinfection exclusion protein" +BW25113_1353__5prime sieB__5prime 0 1412730 1412927 1 453 0.13131313131313133 198 26 "Rac prophage; phage superinfection exclusion protein" +BW25113_1353__3prime sieB__3prime 0 1413417 1413614 1 512 0.13636363636363635 198 27 "Rac prophage; phage superinfection exclusion protein" +BW25113_4527 ydaF 0 1413413 1413568 -1 534 0.1858974358974359 156 29 "Rac prophage; uncharacterized protein" +BW25113_4527__5prime ydaF__5prime 0 1413569 1413766 -1 248 0.07575757575757576 198 15 "Rac prophage; uncharacterized protein" +BW25113_4527__3prime ydaF__3prime 0 1413215 1413412 -1 52 0.020202020202020204 198 4 "Rac prophage; uncharacterized protein" +BW25113_1355 ydaG 0 1413579 1413713 -1 248 0.1111111111111111 135 15 "Rac prophage; uncharacterized protein" +BW25113_1355__5prime ydaG__5prime 0 1413714 1413911 -1 159 0.020202020202020204 198 4 "Rac prophage; uncharacterized protein" +BW25113_1355__3prime ydaG__3prime 0 1413381 1413578 -1 534 0.14646464646464646 198 29 "Rac prophage; uncharacterized protein" +BW25113_1356 racR 0 1414022 1414498 -1 22 0.0020964360587002098 477 1 "Rac prophage; putative DNA-binding transcriptional regulator" +BW25113_1356__5prime racR__5prime 0 1414499 1414696 -1 31 0.010101010101010102 198 2 "Rac prophage; putative DNA-binding transcriptional regulator" +BW25113_1356__3prime racR__3prime 0 1413824 1414021 -1 1468 0.045454545454545456 198 9 "Rac prophage; putative DNA-binding transcriptional regulator" +BW25113_1357 ydaS 0 1414622 1414918 1 531 0.030303030303030304 297 9 "Rac prophage; putative DNA-binding transcriptional regulator" +BW25113_1357__5prime ydaS__5prime 0 1414424 1414621 1 22 0.005050505050505051 198 1 "Rac prophage; putative DNA-binding transcriptional regulator" +BW25113_1357__3prime ydaS__3prime 0 1414919 1415116 1 112 0.025252525252525252 198 5 "Rac prophage; putative DNA-binding transcriptional regulator" +BW25113_1358 ydaT 0 1414941 1415363 1 266 0.02127659574468085 423 9 "Rac prophage; uncharacterized protein" +BW25113_1358__5prime ydaT__5prime 0 1414743 1414940 1 382 0.030303030303030304 198 6 "Rac prophage; uncharacterized protein" +BW25113_1358__3prime ydaT__3prime 0 1415364 1415561 1 433 0.13636363636363635 198 27 "Rac prophage; uncharacterized protein" +BW25113_1359 ydaU 0 1415376 1416233 1 1003 0.0675990675990676 858 58 "Rac prophage; conserved protein" +BW25113_1359__5prime ydaU__5prime 0 1415178 1415375 1 113 0.015151515151515152 198 3 "Rac prophage; conserved protein" +BW25113_1359__3prime ydaU__3prime 0 1416234 1416431 1 54 0.025252525252525252 198 5 "Rac prophage; conserved protein" +BW25113_1360 ydaV 0 1416240 1416986 1 463 0.028112449799196786 747 21 "Rac prophage; putative DNA replication protein" +BW25113_1360__5prime ydaV__5prime 0 1416042 1416239 1 191 0.0707070707070707 198 14 "Rac prophage; putative DNA replication protein" +BW25113_1360__3prime ydaV__3prime 0 1416987 1417184 1 480 0.09090909090909091 198 18 "Rac prophage; putative DNA replication protein" +BW25113_1361 ydaW 0 1416958 1417457 1 500 0.038 500 19 "1416957_1417457" +BW25113_1361__5prime ydaW__5prime 0 1416760 1416957 1 110 0.03535353535353535 198 7 "1416957_1417457" +BW25113_1361__3prime ydaW__3prime 0 1417458 1417655 1 303 0.11616161616161616 198 23 "1416957_1417457" +BW25113_1362 rzpR 0 1417458 1417901 1 2433 0.23198198198198197 444 103 "1417457_1417901" +BW25113_1362__5prime rzpR__5prime 0 1417260 1417457 1 20 0.005050505050505051 198 1 "1417457_1417901" +BW25113_1362__3prime rzpR__3prime 0 1417902 1418099 1 814 0.18686868686868688 198 37 "1417457_1417901" +BW25113_4528 rzoR 0 1417657 1417842 1 1550 0.3333333333333333 186 62 "Rac prophage; putative lipoprotein" +BW25113_4528__5prime rzoR__5prime 0 1417459 1417656 1 303 0.11616161616161616 198 23 "Rac prophage; putative lipoprotein" +BW25113_4528__3prime rzoR__3prime 0 1417843 1418040 1 586 0.09595959595959595 198 19 "Rac prophage; putative lipoprotein" +BW25113_4528 rzoR 0 1417724 1417741 1 442 0.4444444444444444 18 8 "1417723_1417741" +BW25113_4528__5prime rzoR__5prime 0 1417526 1417723 1 500 0.14646464646464646 198 29 "1417723_1417741" +BW25113_4528__3prime rzoR__3prime 0 1417742 1417939 1 1431 0.30808080808080807 198 61 "1417723_1417741" +BW25113_1363 trkG 0 1418039 1419496 1 6406 0.18998628257887518 1458 277 "Rac prophage; potassium transporter subunit" +BW25113_1363__5prime trkG__5prime 0 1417841 1418038 1 604 0.10101010101010101 198 20 "Rac prophage; potassium transporter subunit" +BW25113_1363__3prime trkG__3prime 0 1419497 1419694 1 2071 0.1919191919191919 198 38 "Rac prophage; potassium transporter subunit" +BW25113_1365 ynaK 0 1419634 1419897 1 6259 0.25757575757575757 264 68 "Rac prophage; conserved protein" +BW25113_1365__5prime ynaK__5prime 0 1419436 1419633 1 1994 0.16666666666666666 198 33 "Rac prophage; conserved protein" +BW25113_1365__3prime ynaK__3prime 0 1419898 1420095 1 790 0.12626262626262627 198 25 "Rac prophage; conserved protein" +BW25113_1366 ydaY 0 1419887 1420339 1 2235 0.20309050772626933 453 92 "1419886_1420339" +BW25113_1366__5prime ydaY__5prime 0 1419689 1419886 1 6055 0.29292929292929293 198 58 "1419886_1420339" +BW25113_1366__3prime ydaY__3prime 0 1420340 1420537 1 1721 0.37373737373737376 198 74 "1419886_1420339" +BW25113_1368 tmpR 0 1420711 1421643 1 2658 0.09646302250803858 933 90 "1420710_1421643" +BW25113_1368__5prime tmpR__5prime 0 1420513 1420710 1 770 0.2474747474747475 198 49 "1420710_1421643" +BW25113_1368__3prime tmpR__3prime 0 1421644 1421841 1 276 0.06565656565656566 198 13 "1420710_1421643" +BW25113_4570 lomR 0 1421646 1423241 1 2071 0.06015037593984962 1596 96 "1421645_1423241" +BW25113_4570__5prime lomR__5prime 0 1421448 1421645 1 286 0.025252525252525252 198 5 "1421645_1423241" +BW25113_4570__3prime lomR__3prime 0 1423242 1423439 1 206 0.04040404040404041 198 8 "1421645_1423241" +1421855_1423051 1421855_1423051 0 1421856 1423051 -1 1519 0.06354515050167224 1196 76 "1421855_1423051" +1421855_1423051__5prime 1421855_1423051__5prime 0 1423052 1423249 -1 164 0.03535353535353535 198 7 "1421855_1423051" +1421855_1423051__3prime 1421855_1423051__3prime 0 1421658 1421855 -1 387 0.06565656565656566 198 13 "1421855_1423051" +BW25113_1370 insH1 0 1422003 1422983 -1 1303 0.06829765545361875 981 67 "1422002_1422983" +BW25113_1370__5prime insH1__5prime 0 1422984 1423181 -1 202 0.03535353535353535 198 7 "1422002_1422983" +BW25113_1370__3prime insH1__3prime 0 1421805 1422002 -1 223 0.04040404040404041 198 8 "1422002_1422983" +BW25113_1372 stfR 0 1423306 1426668 1 7078 0.08266428783823966 3363 278 "Rac prophage; putative tail fiber protein" +BW25113_1372__5prime stfR__5prime 0 1423108 1423305 1 160 0.03535353535353535 198 7 "Rac prophage; putative tail fiber protein" +BW25113_1372__3prime stfR__3prime 0 1426669 1426866 1 475 0.14646464646464646 198 29 "Rac prophage; putative tail fiber protein" +BW25113_1373 tfaR 0 1426668 1427243 1 2577 0.19791666666666666 576 114 "Rac prophage; putative tail fiber assembly protein" +BW25113_1373__5prime tfaR__5prime 0 1426470 1426667 1 1104 0.21717171717171718 198 43 "Rac prophage; putative tail fiber assembly protein" +BW25113_1373__3prime tfaR__3prime 0 1427244 1427441 1 482 0.13636363636363635 198 27 "Rac prophage; putative tail fiber assembly protein" +BW25113_1374 pinR 0 1427341 1427931 -1 5439 0.29780033840947545 591 176 "Rac prophage; putative site-specific recombinase" +BW25113_1374__5prime pinR__5prime 0 1427932 1428129 -1 349 0.10606060606060606 198 21 "Rac prophage; putative site-specific recombinase" +BW25113_1374__3prime pinR__3prime 0 1427143 1427340 -1 1340 0.2222222222222222 198 44 "Rac prophage; putative site-specific recombinase" +BW25113_1375 ynaE 0 1428248 1428481 -1 1879 0.24786324786324787 234 58 "cold shock protein and Rac prophage" +BW25113_1375__5prime ynaE__5prime 0 1428482 1428679 -1 675 0.14646464646464646 198 29 "cold shock protein and Rac prophage" +BW25113_1375__3prime ynaE__3prime 0 1428050 1428247 -1 290 0.08585858585858586 198 17 "cold shock protein and Rac prophage" +BW25113_4638 ttcC 0 1429215 1429265 -1 0 0.0 51 0 "1429214_1429265" +BW25113_4638__5prime ttcC__5prime 0 1429266 1429463 -1 166 0.06060606060606061 198 12 "1429214_1429265" +BW25113_4638__3prime ttcC__3prime 0 1429017 1429214 -1 28 0.010101010101010102 198 2 "1429214_1429265" +BW25113_1376 uspF 0 1429442 1429876 -1 1212 0.12873563218390804 435 56 "stress-induced protein and ATP-binding protein" +BW25113_1376__5prime uspF__5prime 0 1429877 1430074 -1 649 0.1717171717171717 198 34 "stress-induced protein and ATP-binding protein" +BW25113_1376__3prime uspF__3prime 0 1429244 1429441 -1 38 0.015151515151515152 198 3 "stress-induced protein and ATP-binding protein" +BW25113_1377 ompN 0 1430017 1431150 -1 6403 0.22663139329805995 1134 257 "outer membrane pore protein N and non-specific" +BW25113_1377__5prime ompN__5prime 0 1431151 1431348 -1 7 0.005050505050505051 198 1 "outer membrane pore protein N and non-specific" +BW25113_1377__3prime ompN__3prime 0 1429819 1430016 -1 317 0.12121212121212122 198 24 "outer membrane pore protein N and non-specific" +BW25113_4427 micC 0 1431378 1431486 1 256 0.06422018348623854 109 7 "sRNA antisense regulator of OmpC translation and Hfq-dependent" +BW25113_4427__5prime micC__5prime 0 1431180 1431377 1 81 0.025252525252525252 198 5 "sRNA antisense regulator of OmpC translation and Hfq-dependent" +BW25113_4427__3prime micC__3prime 0 1431487 1431684 1 590 0.14646464646464646 198 29 "sRNA antisense regulator of OmpC translation and Hfq-dependent" +BW25113_1378 pfo 0 1431517 1435041 -1 4569 0.06780141843971631 3525 239 "pyruvate-flavodoxin oxidoreductase" +BW25113_1378__5prime pfo__5prime 0 1435042 1435239 -1 166 0.06565656565656566 198 13 "pyruvate-flavodoxin oxidoreductase" +BW25113_1378__3prime pfo__3prime 0 1431319 1431516 -1 474 0.09595959595959595 198 19 "pyruvate-flavodoxin oxidoreductase" +BW25113_4529 ydbJ 0 1435315 1435581 1 840 0.13857677902621723 267 37 "DUF333 family putative lipoprotein" +BW25113_4529__5prime ydbJ__5prime 0 1435117 1435314 1 193 0.045454545454545456 198 9 "DUF333 family putative lipoprotein" +BW25113_4529__3prime ydbJ__3prime 0 1435582 1435779 1 421 0.12121212121212122 198 24 "DUF333 family putative lipoprotein" +BW25113_1379 hslJ 0 1435578 1436000 -1 902 0.07565011820330969 423 32 "heat-inducible lipoprotein involved in novobiocin resistance" +BW25113_1379__5prime hslJ__5prime 0 1436001 1436198 -1 451 0.09090909090909091 198 18 "heat-inducible lipoprotein involved in novobiocin resistance" +BW25113_1379__3prime hslJ__3prime 0 1435380 1435577 -1 602 0.10606060606060606 198 21 "heat-inducible lipoprotein involved in novobiocin resistance" +BW25113_1380 ldhA 0 1436111 1437100 -1 929 0.04242424242424243 990 42 "fermentative D-lactate dehydrogenase and NAD-dependent" +BW25113_1380__5prime ldhA__5prime 0 1437101 1437298 -1 260 0.08585858585858586 198 17 "fermentative D-lactate dehydrogenase and NAD-dependent" +BW25113_1380__3prime ldhA__3prime 0 1435913 1436110 -1 575 0.0707070707070707 198 14 "fermentative D-lactate dehydrogenase and NAD-dependent" +BW25113_1381 ydbH 0 1437308 1439947 1 6119 0.09924242424242424 2640 262 "putative membrane-anchored protein and function unknown" +BW25113_1381__5prime ydbH__5prime 0 1437110 1437307 1 260 0.08585858585858586 198 17 "putative membrane-anchored protein and function unknown" +BW25113_1381__3prime ydbH__3prime 0 1439948 1440145 1 1139 0.2727272727272727 198 54 "putative membrane-anchored protein and function unknown" +BW25113_1382 ynbE 0 1439944 1440129 1 1139 0.2903225806451613 186 54 "lipoprotein" +BW25113_1382__5prime ynbE__5prime 0 1439746 1439943 1 1661 0.2878787878787879 198 57 "lipoprotein" +BW25113_1382__3prime ynbE__3prime 0 1440130 1440327 1 716 0.14646464646464646 198 29 "lipoprotein" +BW25113_1383 ydbL 0 1440137 1440463 1 1093 0.14067278287461774 327 46 "DUF1318 family protein" +BW25113_1383__5prime ydbL__5prime 0 1439939 1440136 1 1139 0.2727272727272727 198 54 "DUF1318 family protein" +BW25113_1383__3prime ydbL__3prime 0 1440464 1440661 1 345 0.06565656565656566 198 13 "DUF1318 family protein" +BW25113_1384 feaR 0 1440635 1441540 -1 2038 0.10596026490066225 906 96 "transcriptional activator for tynA and feaB" +BW25113_1384__5prime feaR__5prime 0 1441541 1441738 -1 180 0.07575757575757576 198 15 "transcriptional activator for tynA and feaB" +BW25113_1384__3prime feaR__3prime 0 1440437 1440634 -1 394 0.08585858585858586 198 17 "transcriptional activator for tynA and feaB" +BW25113_1385 feaB 0 1441776 1443275 1 2083 0.06266666666666666 1500 94 "phenylacetaldehyde dehydrogenase" +BW25113_1385__5prime feaB__5prime 0 1441578 1441775 1 162 0.06565656565656566 198 13 "phenylacetaldehyde dehydrogenase" +BW25113_1385__3prime feaB__3prime 0 1443276 1443473 1 565 0.07575757575757576 198 15 "phenylacetaldehyde dehydrogenase" +BW25113_1386 tynA 0 1443333 1445606 -1 3386 0.06420404573438875 2274 146 "tyramine oxidase and copper-requiring" +BW25113_1386__5prime tynA__5prime 0 1445607 1445804 -1 389 0.09595959595959595 198 19 "tyramine oxidase and copper-requiring" +BW25113_1386__3prime tynA__3prime 0 1443135 1443332 -1 354 0.07575757575757576 198 15 "tyramine oxidase and copper-requiring" +BW25113_1387 paaZ 0 1445854 1447899 -1 3134 0.05865102639296188 2046 120 "fused oxepin-CoA hydrolase/3-oxo-5 and 6-dehydrosuberyl-CoA semialdehyde dehydrogenase" +BW25113_1387__5prime paaZ__5prime 0 1447900 1448097 -1 0 0.0 198 0 "fused oxepin-CoA hydrolase/3-oxo-5 and 6-dehydrosuberyl-CoA semialdehyde dehydrogenase" +BW25113_1387__3prime paaZ__3prime 0 1445656 1445853 -1 237 0.08080808080808081 198 16 "fused oxepin-CoA hydrolase/3-oxo-5 and 6-dehydrosuberyl-CoA semialdehyde dehydrogenase" +BW25113_1388 paaA 0 1448184 1449113 1 1095 0.08064516129032258 930 75 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1388__5prime paaA__5prime 0 1447986 1448183 1 0 0.0 198 0 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1388__3prime paaA__3prime 0 1449114 1449311 1 150 0.050505050505050504 198 10 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1389 paaB 0 1449125 1449412 1 417 0.07291666666666667 288 21 "putative ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1389__5prime paaB__5prime 0 1448927 1449124 1 166 0.07575757575757576 198 15 "putative ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1389__3prime paaB__3prime 0 1449413 1449610 1 175 0.050505050505050504 198 10 "putative ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1390 paaC 0 1449421 1450167 1 965 0.05756358768406961 747 43 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1390__5prime paaC__5prime 0 1449223 1449420 1 365 0.08080808080808081 198 16 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1390__3prime paaC__3prime 0 1450168 1450365 1 369 0.09090909090909091 198 18 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1391 paaD 0 1450182 1450679 1 661 0.0642570281124498 498 32 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1391__5prime paaD__5prime 0 1449984 1450181 1 397 0.0707070707070707 198 14 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1391__3prime paaD__3prime 0 1450680 1450877 1 224 0.05555555555555555 198 11 "ring 1 and 2-phenylacetyl-CoA epoxidase subunit" +BW25113_1392 paaE 0 1450687 1451757 1 1080 0.05415499533146592 1071 58 "ring 1 and 2-phenylacetyl-CoA epoxidase and NAD(P)H oxidoreductase component" +BW25113_1392__5prime paaE__5prime 0 1450489 1450686 1 242 0.06565656565656566 198 13 "ring 1 and 2-phenylacetyl-CoA epoxidase and NAD(P)H oxidoreductase component" +BW25113_1392__3prime paaE__3prime 0 1451758 1451955 1 317 0.0707070707070707 198 14 "ring 1 and 2-phenylacetyl-CoA epoxidase and NAD(P)H oxidoreductase component" +BW25113_1393 paaF 0 1451754 1452521 1 554 0.033854166666666664 768 26 "2 and 3-dehydroadipyl-CoA hydratase" +BW25113_1393__5prime paaF__5prime 0 1451556 1451753 1 102 0.06565656565656566 198 13 "2 and 3-dehydroadipyl-CoA hydratase" +BW25113_1393__3prime paaF__3prime 0 1452522 1452719 1 162 0.025252525252525252 198 5 "2 and 3-dehydroadipyl-CoA hydratase" +BW25113_1394 paaG 0 1452521 1453309 1 1034 0.05576679340937896 789 44 "1 and 2-epoxyphenylacetyl-CoA isomerase and oxepin-CoA-forming" +BW25113_1394__5prime paaG__5prime 0 1452323 1452520 1 48 0.010101010101010102 198 2 "1 and 2-epoxyphenylacetyl-CoA isomerase and oxepin-CoA-forming" +BW25113_1394__3prime paaG__3prime 0 1453310 1453507 1 315 0.06565656565656566 198 13 "1 and 2-epoxyphenylacetyl-CoA isomerase and oxepin-CoA-forming" +BW25113_1395 paaH 0 1453311 1454738 1 1763 0.06092436974789916 1428 87 "3-hydroxyadipyl-CoA dehydrogenase and NAD+-dependent" +BW25113_1395__5prime paaH__5prime 0 1453113 1453310 1 277 0.08080808080808081 198 16 "3-hydroxyadipyl-CoA dehydrogenase and NAD+-dependent" +BW25113_1395__3prime paaH__3prime 0 1454739 1454936 1 613 0.15656565656565657 198 31 "3-hydroxyadipyl-CoA dehydrogenase and NAD+-dependent" +BW25113_1396 paaI 0 1454728 1455150 1 776 0.1016548463356974 423 43 "hydroxyphenylacetyl-CoA thioesterase" +BW25113_1396__5prime paaI__5prime 0 1454530 1454727 1 603 0.13131313131313133 198 26 "hydroxyphenylacetyl-CoA thioesterase" +BW25113_1396__3prime paaI__3prime 0 1455151 1455348 1 135 0.025252525252525252 198 5 "hydroxyphenylacetyl-CoA thioesterase" +BW25113_1397 paaJ 0 1455150 1456355 1 1737 0.05721393034825871 1206 69 "3-oxoadipyl-CoA/3-oxo-5 and 6-dehydrosuberyl-CoA thiolase" +BW25113_1397__5prime paaJ__5prime 0 1454952 1455149 1 140 0.050505050505050504 198 10 "3-oxoadipyl-CoA/3-oxo-5 and 6-dehydrosuberyl-CoA thiolase" +BW25113_1397__3prime paaJ__3prime 0 1456356 1456553 1 213 0.03535353535353535 198 7 "3-oxoadipyl-CoA/3-oxo-5 and 6-dehydrosuberyl-CoA thiolase" +BW25113_1398 paaK 0 1456382 1457695 1 1785 0.0639269406392694 1314 84 "phenylacetyl-CoA ligase" +BW25113_1398__5prime paaK__5prime 0 1456184 1456381 1 471 0.09595959595959595 198 19 "phenylacetyl-CoA ligase" +BW25113_1398__3prime paaK__3prime 0 1457696 1457893 1 192 0.07575757575757576 198 15 "phenylacetyl-CoA ligase" +BW25113_1399 paaX 0 1457796 1458746 1 969 0.04942166140904311 951 47 "transcriptional repressor of phenylacetic acid degradation paa operon and phenylacetyl-CoA inducer" +BW25113_1399__5prime paaX__5prime 0 1457598 1457795 1 262 0.06060606060606061 198 12 "transcriptional repressor of phenylacetic acid degradation paa operon and phenylacetyl-CoA inducer" +BW25113_1399__3prime paaX__3prime 0 1458747 1458944 1 265 0.07575757575757576 198 15 "transcriptional repressor of phenylacetic acid degradation paa operon and phenylacetyl-CoA inducer" +BW25113_1400 paaY 0 1458728 1459318 1 1865 0.12521150592216582 591 74 "putative hexapeptide repeat acetyltransferase" +BW25113_1400__5prime paaY__5prime 0 1458530 1458727 1 29 0.005050505050505051 198 1 "putative hexapeptide repeat acetyltransferase" +BW25113_1400__3prime paaY__3prime 0 1459319 1459516 1 106 0.010101010101010102 198 2 "putative hexapeptide repeat acetyltransferase" +BW25113_4674 ynbG 0 1459422 1459487 -1 0 0.0 66 0 "uncharacterized protein" +BW25113_4674__5prime ynbG__5prime 0 1459488 1459685 -1 363 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_4674__3prime ynbG__3prime 0 1459224 1459421 -1 222 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_4492 ydbA 0 1459649 1468270 1 39304 0.1871955462769659 8622 1614 "1459648_1468270" +BW25113_4492__5prime ydbA__5prime 0 1459451 1459648 1 86 0.020202020202020204 198 4 "1459648_1468270" +BW25113_4492__3prime ydbA__3prime 0 1468271 1468468 1 314 0.11616161616161616 198 23 "1459648_1468270" +1462166_1463497 1462166_1463497 0 1462167 1463497 -1 5438 0.25845229151014276 1331 344 "1462166_1463497" +1462166_1463497__5prime 1462166_1463497__5prime 0 1463498 1463695 -1 243 0.06565656565656566 198 13 "1462166_1463497" +1462166_1463497__3prime 1462166_1463497__3prime 0 1461969 1462166 -1 760 0.11616161616161616 198 23 "1462166_1463497" +BW25113_1402 insD1 0 1462178 1463083 -1 3469 0.2560706401766004 906 232 "IS2 transposase TnpB" +BW25113_1402__5prime insD1__5prime 0 1463084 1463281 -1 320 0.12121212121212122 198 24 "IS2 transposase TnpB" +BW25113_1402__3prime insD1__3prime 0 1461980 1462177 -1 745 0.12121212121212122 198 24 "IS2 transposase TnpB" +BW25113_1403 insC1 0 1463041 1463406 -1 1803 0.2896174863387978 366 106 "IS2 repressor TnpA" +BW25113_1403__5prime insC1__5prime 0 1463407 1463604 -1 377 0.11616161616161616 198 23 "IS2 repressor TnpA" +BW25113_1403__3prime insC1__3prime 0 1462843 1463040 -1 404 0.20707070707070707 198 41 "IS2 repressor TnpA" +BW25113_1404 insI1 0 1463615 1464766 1 3943 0.21354166666666666 1152 246 "IS30 transposase" +BW25113_1404__5prime insI1__5prime 0 1463417 1463614 1 315 0.09090909090909091 198 18 "IS30 transposase" +BW25113_1404__3prime insI1__3prime 0 1464767 1464964 1 919 0.26262626262626265 198 52 "IS30 transposase" +BW25113_1406 ydbC 0 1468478 1469338 1 2464 0.14285714285714285 861 123 "putative NAD(P)-binding oxidoreductase" +BW25113_1406__5prime ydbC__5prime 0 1468280 1468477 1 314 0.11616161616161616 198 23 "putative NAD(P)-binding oxidoreductase" +BW25113_1406__3prime ydbC__3prime 0 1469339 1469536 1 1443 0.2727272727272727 198 54 "putative NAD(P)-binding oxidoreductase" +1469295_1470516 1469295_1470516 0 1469296 1470516 1 8257 0.2285012285012285 1221 279 "1469295_1470516" +1469295_1470516__5prime 1469295_1470516__5prime 0 1469098 1469295 1 1026 0.26262626262626265 198 52 "1469295_1470516" +1469295_1470516__3prime 1469295_1470516__3prime 0 1470517 1470714 1 2483 0.398989898989899 198 79 "1469295_1470516" +BW25113_1407 ydbD 0 1469401 1471707 1 17131 0.25617685305591675 2307 591 "PF10971 family putative periplasmic methylglyoxal resistance protein" +BW25113_1407__5prime ydbD__5prime 0 1469203 1469400 1 497 0.17676767676767677 198 35 "PF10971 family putative periplasmic methylglyoxal resistance protein" +BW25113_1407__3prime ydbD__3prime 0 1471708 1471905 1 639 0.17676767676767677 198 35 "PF10971 family putative periplasmic methylglyoxal resistance protein" +BW25113_1408 ynbA 0 1471878 1472483 1 3376 0.22277227722772278 606 135 "inner membrane protein" +BW25113_1408__5prime ynbA__5prime 0 1471680 1471877 1 707 0.18686868686868688 198 37 "inner membrane protein" +BW25113_1408__3prime ynbA__3prime 0 1472484 1472681 1 626 0.20202020202020202 198 40 "inner membrane protein" +BW25113_1409 ynbB 0 1472483 1473379 1 3858 0.18394648829431437 897 165 "putative CDP-diglyceride synthase" +BW25113_1409__5prime ynbB__5prime 0 1472285 1472482 1 1353 0.20707070707070707 198 41 "putative CDP-diglyceride synthase" +BW25113_1409__3prime ynbB__3prime 0 1473380 1473577 1 764 0.16666666666666666 198 33 "putative CDP-diglyceride synthase" +BW25113_1410 ynbC 0 1473395 1475152 1 3102 0.07281001137656427 1758 128 "putative esterase" +BW25113_1410__5prime ynbC__5prime 0 1473197 1473394 1 975 0.17676767676767677 198 35 "putative esterase" +BW25113_1410__3prime ynbC__3prime 0 1475153 1475350 1 193 0.08080808080808081 198 16 "putative esterase" +BW25113_1411 ynbD 0 1475166 1476458 1 1716 0.06883217324052592 1293 89 "putative phosphatase inner membrane protein" +BW25113_1411__5prime ynbD__5prime 0 1474968 1475165 1 241 0.050505050505050504 198 10 "putative phosphatase inner membrane protein" +BW25113_1411__3prime ynbD__3prime 0 1476459 1476656 1 128 0.04040404040404041 198 8 "putative phosphatase inner membrane protein" +BW25113_1412 azoR 0 1476512 1477117 -1 625 0.052805280528052806 606 32 "NADH-azoreductase and FMN-dependent" +BW25113_1412__5prime azoR__5prime 0 1477118 1477315 -1 92 0.045454545454545456 198 9 "NADH-azoreductase and FMN-dependent" +BW25113_1412__3prime azoR__3prime 0 1476314 1476511 -1 270 0.050505050505050504 198 10 "NADH-azoreductase and FMN-dependent" +BW25113_1413 hrpA 0 1477318 1481220 1 3779 0.05098642070202408 3903 199 "putative ATP-dependent helicase" +BW25113_1413__5prime hrpA__5prime 0 1477120 1477317 1 92 0.045454545454545456 198 9 "putative ATP-dependent helicase" +BW25113_1413__3prime hrpA__3prime 0 1481221 1481418 1 264 0.08585858585858586 198 17 "putative ATP-dependent helicase" +BW25113_1414 ydcF 0 1481492 1482292 1 2061 0.07865168539325842 801 63 "DUF218 superfamily protein and SAM-binding" +BW25113_1414__5prime ydcF__5prime 0 1481294 1481491 1 443 0.13131313131313133 198 26 "DUF218 superfamily protein and SAM-binding" +BW25113_1414__3prime ydcF__3prime 0 1482293 1482490 1 55 0.025252525252525252 198 5 "DUF218 superfamily protein and SAM-binding" +BW25113_1415 aldA 0 1482489 1483928 1 1628 0.05555555555555555 1440 80 "aldehyde dehydrogenase A and NAD-linked" +BW25113_1415__5prime aldA__5prime 0 1482291 1482488 1 55 0.025252525252525252 198 5 "aldehyde dehydrogenase A and NAD-linked" +BW25113_1415__3prime aldA__3prime 0 1483929 1484126 1 342 0.08080808080808081 198 16 "aldehyde dehydrogenase A and NAD-linked" +1483939_1483961 1483939_1483961 0 1483940 1483961 1 0 0.0 22 0 "1483939_1483961" +1483939_1483961__5prime 1483939_1483961__5prime 0 1483742 1483939 1 96 0.05555555555555555 198 11 "1483939_1483961" +1483939_1483961__3prime 1483939_1483961__3prime 0 1483962 1484159 1 342 0.08080808080808081 198 16 "1483939_1483961" +BW25113_4493 gapC 0 1483970 1484970 -1 1622 0.07892107892107893 1001 79 "1483969_1484970" +BW25113_4493__5prime gapC__5prime 0 1484971 1485168 -1 105 0.015151515151515152 198 3 "1483969_1484970" +BW25113_4493__3prime gapC__3prime 0 1483772 1483969 -1 96 0.05555555555555555 198 11 "1483969_1484970" +BW25113_1418 cybB 0 1485159 1485689 1 1739 0.1431261770244821 531 76 "cytochrome b561" +BW25113_1418__5prime cybB__5prime 0 1484961 1485158 1 164 0.025252525252525252 198 5 "cytochrome b561" +BW25113_1418__3prime cybB__3prime 0 1485690 1485887 1 358 0.0707070707070707 198 14 "cytochrome b561" +BW25113_4597 rydC 0 1485700 1485763 -1 123 0.09375 64 6 "sRNA antisense regulator of yejABEF and Hfq-dependent; over-expression causes a thermosensitive growth phenotype on minimal glycerol and maltose and or ribose media" +BW25113_4597__5prime rydC__5prime 0 1485764 1485961 -1 349 0.06060606060606061 198 12 "sRNA antisense regulator of yejABEF and Hfq-dependent; over-expression causes a thermosensitive growth phenotype on minimal glycerol and maltose and or ribose media" +BW25113_4597__3prime rydC__3prime 0 1485502 1485699 -1 732 0.1111111111111111 198 22 "sRNA antisense regulator of yejABEF and Hfq-dependent; over-expression causes a thermosensitive growth phenotype on minimal glycerol and maltose and or ribose media" +BW25113_1419 ydcA 0 1485934 1486107 1 57 0.034482758620689655 174 6 "putative periplasmic protein" +BW25113_1419__5prime ydcA__5prime 0 1485736 1485933 1 443 0.07575757575757576 198 15 "putative periplasmic protein" +BW25113_1419__3prime ydcA__3prime 0 1486108 1486305 1 306 0.06060606060606061 198 12 "putative periplasmic protein" +BW25113_4428 hokB 0 1486179 1486328 -1 291 0.06666666666666667 150 10 "toxic polypeptide and small" +BW25113_4428__5prime hokB__5prime 0 1486329 1486526 -1 152 0.06565656565656566 198 13 "toxic polypeptide and small" +BW25113_4428__3prime hokB__3prime 0 1485981 1486178 -1 68 0.04040404040404041 198 8 "toxic polypeptide and small" +BW25113_1420 mokB 0 1486219 1486386 -1 265 0.05952380952380952 168 10 "regulatory peptide" +BW25113_1420__5prime mokB__5prime 0 1486387 1486584 -1 133 0.08080808080808081 198 16 "regulatory peptide" +BW25113_1420__3prime mokB__3prime 0 1486021 1486218 -1 128 0.045454545454545456 198 9 "regulatory peptide" +BW25113_4429 sokB 0 1486376 1486431 1 0 0.0 56 0 "sRNA antisense regulator blocking mokB and and hence hokB and translation" +BW25113_4429__5prime sokB__5prime 0 1486178 1486375 1 342 0.06060606060606061 198 12 "sRNA antisense regulator blocking mokB and and hence hokB and translation" +BW25113_4429__3prime sokB__3prime 0 1486432 1486629 1 159 0.09090909090909091 198 18 "sRNA antisense regulator blocking mokB and and hence hokB and translation" +BW25113_1421 trg 0 1486727 1488367 1 2249 0.06642291285801341 1641 109 "methyl-accepting chemotaxis protein III and ribose and galactose sensor receptor" +BW25113_1421__5prime trg__5prime 0 1486529 1486726 1 58 0.03535353535353535 198 7 "methyl-accepting chemotaxis protein III and ribose and galactose sensor receptor" +BW25113_1421__3prime trg__3prime 0 1488368 1488565 1 194 0.06060606060606061 198 12 "methyl-accepting chemotaxis protein III and ribose and galactose sensor receptor" +BW25113_1422 ydcI 0 1488405 1489328 -1 1367 0.06168831168831169 924 57 "putative DNA-binding transcriptional regulator" +BW25113_1422__5prime ydcI__5prime 0 1489329 1489526 -1 163 0.045454545454545456 198 9 "putative DNA-binding transcriptional regulator" +BW25113_1422__3prime ydcI__3prime 0 1488207 1488404 -1 259 0.05555555555555555 198 11 "putative DNA-binding transcriptional regulator" +BW25113_1423 ydcJ 0 1489545 1490888 1 2148 0.06919642857142858 1344 93 "putative metalloenzyme" +BW25113_1423__5prime ydcJ__5prime 0 1489347 1489544 1 163 0.045454545454545456 198 9 "putative metalloenzyme" +BW25113_1423__3prime ydcJ__3prime 0 1490889 1491086 1 80 0.03535353535353535 198 7 "putative metalloenzyme" +BW25113_1424 opgD 0 1491113 1492768 1 2443 0.07548309178743962 1656 125 "osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein" +BW25113_1424__5prime opgD__5prime 0 1490915 1491112 1 136 0.0707070707070707 198 14 "osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein" +BW25113_1424__3prime opgD__3prime 0 1492769 1492966 1 411 0.12121212121212122 198 24 "osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein" +BW25113_1426 ydcH 0 1492908 1493132 1 148 0.057777777777777775 225 13 "DUF465 family protein" +BW25113_1426__5prime ydcH__5prime 0 1492710 1492907 1 501 0.15151515151515152 198 30 "DUF465 family protein" +BW25113_1426__3prime ydcH__3prime 0 1493133 1493330 1 160 0.030303030303030304 198 6 "DUF465 family protein" +BW25113_1427 rimL 0 1493195 1493734 1 742 0.06666666666666667 540 36 "ribosomal-protein-L7/L12-serine acetyltransferase" +BW25113_1427__5prime rimL__5prime 0 1492997 1493194 1 148 0.06565656565656566 198 13 "ribosomal-protein-L7/L12-serine acetyltransferase" +BW25113_1427__3prime rimL__3prime 0 1493735 1493932 1 444 0.1414141414141414 198 28 "ribosomal-protein-L7/L12-serine acetyltransferase" +BW25113_1428 ydcK 0 1493726 1494706 -1 1274 0.07237512742099898 981 71 "uncharacterized protein" +BW25113_1428__5prime ydcK__5prime 0 1494707 1494904 -1 590 0.1111111111111111 198 22 "uncharacterized protein" +BW25113_1428__3prime ydcK__3prime 0 1493528 1493725 -1 349 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_1429 tehA 0 1494830 1495822 1 3142 0.10171198388721048 993 101 "potassium-tellurite ethidium and proflavin transporter" +BW25113_1429__5prime tehA__5prime 0 1494632 1494829 1 205 0.0707070707070707 198 14 "potassium-tellurite ethidium and proflavin transporter" +BW25113_1429__3prime tehA__3prime 0 1495823 1496020 1 750 0.15656565656565657 198 31 "potassium-tellurite ethidium and proflavin transporter" +BW25113_1430 tehB 0 1495819 1496412 1 2055 0.14983164983164984 594 89 "tellurite and selenium methyltransferase and SAM-dependent; tellurite and selenium resistance protein" +BW25113_1430__5prime tehB__5prime 0 1495621 1495818 1 656 0.09090909090909091 198 18 "tellurite and selenium methyltransferase and SAM-dependent; tellurite and selenium resistance protein" +BW25113_1430__3prime tehB__3prime 0 1496413 1496610 1 126 0.03535353535353535 198 7 "tellurite and selenium methyltransferase and SAM-dependent; tellurite and selenium resistance protein" +BW25113_1431 ydcL 0 1496714 1497382 1 1693 0.11210762331838565 669 75 "lipoprotein" +BW25113_1431__5prime ydcL__5prime 0 1496516 1496713 1 80 0.04040404040404041 198 8 "lipoprotein" +BW25113_1431__3prime ydcL__3prime 0 1497383 1497580 1 549 0.11616161616161616 198 23 "lipoprotein" +BW25113_4578 insP 0 1497475 1497906 -1 575 0.06481481481481481 432 28 "1497474_1497906" +BW25113_4578__5prime insP__5prime 0 1497907 1498104 -1 53 0.03535353535353535 198 7 "1497474_1497906" +BW25113_4578__3prime insP__3prime 0 1497277 1497474 -1 415 0.08585858585858586 198 17 "1497474_1497906" +BW25113_1432 insQ 0 1497974 1499122 1 1144 0.04612706701479547 1149 53 "IS609 transposase B" +BW25113_1432__5prime insQ__5prime 0 1497776 1497973 1 49 0.03535353535353535 198 7 "IS609 transposase B" +BW25113_1432__3prime insQ__3prime 0 1499123 1499320 1 292 0.0707070707070707 198 14 "IS609 transposase B" +BW25113_1433 ydcO 0 1499162 1500337 -1 959 0.04591836734693878 1176 54 "BenE family inner membrane putative transporter" +BW25113_1433__5prime ydcO__5prime 0 1500338 1500535 -1 74 0.04040404040404041 198 8 "BenE family inner membrane putative transporter" +BW25113_1433__3prime ydcO__3prime 0 1498964 1499161 -1 543 0.08585858585858586 198 17 "BenE family inner membrane putative transporter" +BW25113_1434 ydcN 0 1500429 1500965 1 609 0.04655493482309125 537 25 "putative DNA-binding transcriptional regulator" +BW25113_1434__5prime ydcN__5prime 0 1500231 1500428 1 83 0.03535353535353535 198 7 "putative DNA-binding transcriptional regulator" +BW25113_1434__3prime ydcN__3prime 0 1500966 1501163 1 187 0.06565656565656566 198 13 "putative DNA-binding transcriptional regulator" +BW25113_1435 ydcP 0 1501038 1502999 1 2414 0.0581039755351682 1962 114 "putative peptidase" +BW25113_1435__5prime ydcP__5prime 0 1500840 1501037 1 375 0.08080808080808081 198 16 "putative peptidase" +BW25113_1435__3prime ydcP__3prime 0 1503000 1503197 1 256 0.0707070707070707 198 14 "putative peptidase" +1503047_1503080 1503047_1503080 0 1503048 1503080 1 41 0.06060606060606061 33 2 "1503047_1503080" +1503047_1503080__5prime 1503047_1503080__5prime 0 1502850 1503047 1 279 0.06565656565656566 198 13 "1503047_1503080" +1503047_1503080__3prime 1503047_1503080__3prime 0 1503081 1503278 1 396 0.12626262626262627 198 25 "1503047_1503080" +BW25113_1436 yncJ 0 1503091 1503321 -1 373 0.11688311688311688 231 27 "uncharacterized protein" +BW25113_1436__5prime yncJ__5prime 0 1503322 1503519 -1 46 0.010101010101010102 198 2 "uncharacterized protein" +BW25113_1436__3prime yncJ__3prime 0 1502893 1503090 -1 279 0.07575757575757576 198 15 "uncharacterized protein" +1503160_1504908 1503160_1504908 0 1503161 1504908 1 1619 0.05606407322654462 1748 98 "1503160_1504908" +1503160_1504908__5prime 1503160_1504908__5prime 0 1502963 1503160 1 352 0.10101010101010101 198 20 "1503160_1504908" +1503160_1504908__3prime 1503160_1504908__3prime 0 1504909 1505106 1 378 0.06565656565656566 198 13 "1503160_1504908" +BW25113_4532 hicA 0 1503543 1503719 1 171 0.062146892655367235 177 11 "mRNA interferase toxin of the HicAB toxin-antitoxin system" +BW25113_4532__5prime hicA__5prime 0 1503345 1503542 1 6 0.005050505050505051 198 1 "mRNA interferase toxin of the HicAB toxin-antitoxin system" +BW25113_4532__3prime hicA__3prime 0 1503720 1503917 1 239 0.050505050505050504 198 10 "mRNA interferase toxin of the HicAB toxin-antitoxin system" +BW25113_1438 hicB 0 1503765 1504181 1 440 0.050359712230215826 417 21 "antitoxin for the HicAB toxin-antitoxin system" +BW25113_1438__5prime hicB__5prime 0 1503567 1503764 1 171 0.05555555555555555 198 11 "antitoxin for the HicAB toxin-antitoxin system" +BW25113_1438__3prime hicB__3prime 0 1504182 1504379 1 99 0.03535353535353535 198 7 "antitoxin for the HicAB toxin-antitoxin system" +BW25113_1439 ydcR 0 1504260 1505666 1 1702 0.0689410092395167 1407 97 "putative DNA-binding transcriptional regulator/putative amino transferase" +BW25113_1439__5prime ydcR__5prime 0 1504062 1504259 1 23 0.010101010101010102 198 2 "putative DNA-binding transcriptional regulator/putative amino transferase" +BW25113_1439__3prime ydcR__3prime 0 1505667 1505864 1 320 0.09595959595959595 198 19 "putative DNA-binding transcriptional regulator/putative amino transferase" +BW25113_1440 ydcS 0 1505911 1507056 1 1449 0.06631762652705062 1146 76 "polyhydroxybutyrate (PHB) synthase and ABC transporter periplasmic binding protein homolog" +BW25113_1440__5prime ydcS__5prime 0 1505713 1505910 1 313 0.13636363636363635 198 27 "polyhydroxybutyrate (PHB) synthase and ABC transporter periplasmic binding protein homolog" +BW25113_1440__3prime ydcS__3prime 0 1507057 1507254 1 42 0.020202020202020204 198 4 "polyhydroxybutyrate (PHB) synthase and ABC transporter periplasmic binding protein homolog" +BW25113_1441 ydcT 0 1507074 1508087 1 820 0.038461538461538464 1014 39 "putative spermidine/putrescine transporter subunit" +BW25113_1441__5prime ydcT__5prime 0 1506876 1507073 1 199 0.050505050505050504 198 10 "putative spermidine/putrescine transporter subunit" +BW25113_1441__3prime ydcT__3prime 0 1508088 1508285 1 280 0.07575757575757576 198 15 "putative spermidine/putrescine transporter subunit" +BW25113_1442 ydcU 0 1508088 1509029 1 1478 0.07006369426751592 942 66 "putative spermidine/putrescine transporter subunit" +BW25113_1442__5prime ydcU__5prime 0 1507890 1508087 1 150 0.03535353535353535 198 7 "putative spermidine/putrescine transporter subunit" +BW25113_1442__3prime ydcU__3prime 0 1509030 1509227 1 282 0.05555555555555555 198 11 "putative spermidine/putrescine transporter subunit" +BW25113_1443 ydcV 0 1509019 1509813 1 712 0.03773584905660377 795 30 "putative spermidine/putrescine transporter subunit" +BW25113_1443__5prime ydcV__5prime 0 1508821 1509018 1 326 0.050505050505050504 198 10 "putative spermidine/putrescine transporter subunit" +BW25113_1443__3prime ydcV__3prime 0 1509814 1510011 1 320 0.05555555555555555 198 11 "putative spermidine/putrescine transporter subunit" +BW25113_1444 patD 0 1509835 1511259 1 2290 0.05824561403508772 1425 83 "gamma-aminobutyraldehyde dehydrogenase" +BW25113_1444__5prime patD__5prime 0 1509637 1509834 1 124 0.030303030303030304 198 6 "gamma-aminobutyraldehyde dehydrogenase" +BW25113_1444__3prime patD__3prime 0 1511260 1511457 1 267 0.08080808080808081 198 16 "gamma-aminobutyraldehyde dehydrogenase" +BW25113_4598 yncL 0 1511356 1511451 -1 150 0.08333333333333333 96 8 "stress-induced small inner membrane enterobacterial protein" +BW25113_4598__5prime yncL__5prime 0 1511452 1511649 -1 28 0.015151515151515152 198 3 "stress-induced small inner membrane enterobacterial protein" +BW25113_4598__3prime yncL__3prime 0 1511158 1511355 -1 293 0.07575757575757576 198 15 "stress-induced small inner membrane enterobacterial protein" +BW25113_1445 ydcX 0 1511646 1511819 1 161 0.05172413793103448 174 9 "DUF2566 family protein" +BW25113_1445__5prime ydcX__5prime 0 1511448 1511645 1 28 0.015151515151515152 198 3 "DUF2566 family protein" +BW25113_1445__3prime ydcX__3prime 0 1511820 1512017 1 280 0.05555555555555555 198 11 "DUF2566 family protein" +BW25113_1446 ydcY 0 1511905 1512138 1 199 0.04700854700854701 234 11 "uncharacterized protein" +BW25113_1446__5prime ydcY__5prime 0 1511707 1511904 1 313 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_1446__3prime ydcY__3prime 0 1512139 1512336 1 476 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_1447 ydcZ 0 1512139 1512588 -1 646 0.06444444444444444 450 29 "DUF606 family inner membrane protein" +BW25113_1447__5prime ydcZ__5prime 0 1512589 1512786 -1 161 0.04040404040404041 198 8 "DUF606 family inner membrane protein" +BW25113_1447__3prime ydcZ__3prime 0 1511941 1512138 -1 177 0.050505050505050504 198 10 "DUF606 family inner membrane protein" +BW25113_1448 mnaT 0 1512585 1513103 -1 733 0.055876685934489405 519 29 "methionine N-acyltransferase; L-amino acid N-acyltransferase" +BW25113_1448__5prime mnaT__5prime 0 1513104 1513301 -1 884 0.12626262626262627 198 25 "methionine N-acyltransferase; L-amino acid N-acyltransferase" +BW25113_1448__3prime mnaT__3prime 0 1512387 1512584 -1 82 0.030303030303030304 198 6 "methionine N-acyltransferase; L-amino acid N-acyltransferase" +BW25113_1449 curA 0 1513284 1514321 1 2012 0.09441233140655106 1038 98 "curcumin/dihydrocurcumin reductase and NADPH-dependent" +BW25113_1449__5prime curA__5prime 0 1513086 1513283 1 884 0.12626262626262627 198 25 "curcumin/dihydrocurcumin reductase and NADPH-dependent" +BW25113_1449__3prime curA__3prime 0 1514322 1514519 1 703 0.1717171717171717 198 34 "curcumin/dihydrocurcumin reductase and NADPH-dependent" +BW25113_1450 mcbR 0 1514519 1515184 1 3968 0.23423423423423423 666 156 "colanic acid and biofilm gene transcriptional regulator and MqsR-controlled" +BW25113_1450__5prime mcbR__5prime 0 1514321 1514518 1 696 0.16666666666666666 198 33 "colanic acid and biofilm gene transcriptional regulator and MqsR-controlled" +BW25113_1450__3prime mcbR__3prime 0 1515185 1515382 1 374 0.08080808080808081 198 16 "colanic acid and biofilm gene transcriptional regulator and MqsR-controlled" +BW25113_1451 yncD 0 1515220 1517322 -1 3702 0.08131241084165478 2103 171 "putative iron outer membrane transporter" +BW25113_1451__5prime yncD__5prime 0 1517323 1517520 -1 8 0.005050505050505051 198 1 "putative iron outer membrane transporter" +BW25113_1451__3prime yncD__3prime 0 1515022 1515219 -1 396 0.13636363636363635 198 27 "putative iron outer membrane transporter" +BW25113_1452 yncE 0 1517564 1518625 1 1991 0.09133709981167608 1062 97 "ATP-binding protein and periplasmic and function unknown" +BW25113_1452__5prime yncE__5prime 0 1517366 1517563 1 93 0.025252525252525252 198 5 "ATP-binding protein and periplasmic and function unknown" +BW25113_1452__3prime yncE__3prime 0 1518626 1518823 1 200 0.06565656565656566 198 13 "ATP-binding protein and periplasmic and function unknown" +BW25113_1453 ansP 0 1518738 1520237 -1 2302 0.07133333333333333 1500 107 "L-asparagine transporter" +BW25113_1453__5prime ansP__5prime 0 1520238 1520435 -1 51 0.020202020202020204 198 4 "L-asparagine transporter" +BW25113_1453__3prime ansP__3prime 0 1518540 1518737 -1 182 0.06060606060606061 198 12 "L-asparagine transporter" +BW25113_1454 yncG 0 1520504 1521121 1 2209 0.15210355987055016 618 94 "glutathione S-transferase homolog" +BW25113_1454__5prime yncG__5prime 0 1520306 1520503 1 282 0.045454545454545456 198 9 "glutathione S-transferase homolog" +BW25113_1454__3prime yncG__3prime 0 1521122 1521319 1 103 0.04040404040404041 198 8 "glutathione S-transferase homolog" +BW25113_1455 yncH 0 1521197 1521409 1 104 0.04225352112676056 213 9 "IPR020099 family protein" +BW25113_1455__5prime yncH__5prime 0 1520999 1521196 1 506 0.12626262626262627 198 25 "IPR020099 family protein" +BW25113_1455__3prime yncH__3prime 0 1521410 1521607 1 354 0.1111111111111111 198 22 "IPR020099 family protein" +BW25113_1456 rhsE 0 1522159 1524195 1 7974 0.1634756995581738 2037 333 "1522158_1524195" +BW25113_1456__5prime rhsE__5prime 0 1521961 1522158 1 434 0.10101010101010101 198 20 "1522158_1524195" +BW25113_1456__3prime rhsE__3prime 0 1524196 1524393 1 23 0.020202020202020204 198 4 "1522158_1524195" +BW25113_1457 ydcD 0 1524179 1524661 1 105 0.026915113871635612 483 13 "uncharacterized protein" +BW25113_1457__5prime ydcD__5prime 0 1523981 1524178 1 1129 0.2828282828282828 198 56 "uncharacterized protein" +BW25113_1457__3prime ydcD__3prime 0 1524662 1524859 1 856 0.14646464646464646 198 29 "uncharacterized protein" +BW25113_1459 yncI 0 1524843 1525896 1 2949 0.15180265654648956 1054 160 "1524842_1525896" +BW25113_1459__5prime yncI__5prime 0 1524645 1524842 1 853 0.1414141414141414 198 28 "1524842_1525896" +BW25113_1459__3prime yncI__3prime 0 1525897 1526094 1 182 0.020202020202020204 198 4 "1524842_1525896" +BW25113_1460 ydcC 0 1526073 1527209 1 10485 0.32717678100263853 1137 372 "H repeat-associated putative transposase" +BW25113_1460__5prime ydcC__5prime 0 1525875 1526072 1 195 0.025252525252525252 198 5 "H repeat-associated putative transposase" +BW25113_1460__3prime ydcC__3prime 0 1527210 1527407 1 1048 0.2222222222222222 198 44 "H repeat-associated putative transposase" +BW25113_1461 pptA 0 1527309 1527542 1 1122 0.1794871794871795 234 42 "4-oxalocrotonate tautomerase" +BW25113_1461__5prime pptA__5prime 0 1527111 1527308 1 2013 0.3686868686868687 198 73 "4-oxalocrotonate tautomerase" +BW25113_1461__3prime pptA__3prime 0 1527543 1527740 1 684 0.10606060606060606 198 21 "4-oxalocrotonate tautomerase" +BW25113_1462 yddH 0 1527539 1528108 -1 1454 0.1 570 57 "flavin reductase like-protein" +BW25113_1462__5prime yddH__5prime 0 1528109 1528306 -1 305 0.08080808080808081 198 16 "flavin reductase like-protein" +BW25113_1462__3prime yddH__3prime 0 1527341 1527538 -1 923 0.1717171717171717 198 34 "flavin reductase like-protein" +BW25113_1463 nhoA 0 1528281 1529126 1 1100 0.0768321513002364 846 65 "N-hydroxyarylamine O-acetyltransferase" +BW25113_1463__5prime nhoA__5prime 0 1528083 1528280 1 459 0.09595959595959595 198 19 "N-hydroxyarylamine O-acetyltransferase" +BW25113_1463__3prime nhoA__3prime 0 1529127 1529324 1 165 0.08585858585858586 198 17 "N-hydroxyarylamine O-acetyltransferase" +1529139_1529214 1529139_1529214 0 1529140 1529214 1 123 0.16 75 12 "1529139_1529214" +1529139_1529214__5prime 1529139_1529214__5prime 0 1528942 1529139 1 228 0.06060606060606061 198 12 "1529139_1529214" +1529139_1529214__3prime 1529139_1529214__3prime 0 1529215 1529412 1 135 0.06565656565656566 198 13 "1529139_1529214" +BW25113_1464 yddE 0 1529222 1530115 -1 1088 0.05145413870246085 894 46 "PhzC-PhzF family protein" +BW25113_1464__5prime yddE__5prime 0 1530116 1530313 -1 148 0.050505050505050504 198 10 "PhzC-PhzF family protein" +BW25113_1464__3prime yddE__3prime 0 1529024 1529221 -1 197 0.09595959595959595 198 19 "PhzC-PhzF family protein" +BW25113_1465 narV 0 1530194 1530874 -1 1044 0.0763582966226138 681 52 "nitrate reductase 2 (NRZ) and gamma subunit" +BW25113_1465__5prime narV__5prime 0 1530875 1531072 -1 213 0.06565656565656566 198 13 "nitrate reductase 2 (NRZ) and gamma subunit" +BW25113_1465__3prime narV__3prime 0 1529996 1530193 -1 245 0.0707070707070707 198 14 "nitrate reductase 2 (NRZ) and gamma subunit" +BW25113_1466 narW 0 1530871 1531566 -1 950 0.0617816091954023 696 43 "nitrate reductase 2 (NRZ) and delta subunit (assembly subunit)" +BW25113_1466__5prime narW__5prime 0 1531567 1531764 -1 284 0.050505050505050504 198 10 "nitrate reductase 2 (NRZ) and delta subunit (assembly subunit)" +BW25113_1466__3prime narW__3prime 0 1530673 1530870 -1 152 0.06060606060606061 198 12 "nitrate reductase 2 (NRZ) and delta subunit (assembly subunit)" +BW25113_1467 narY 0 1531566 1533110 -1 2427 0.06537216828478964 1545 101 "nitrate reductase 2 (NRZ) and beta subunit" +BW25113_1467__5prime narY__5prime 0 1533111 1533308 -1 128 0.0707070707070707 198 14 "nitrate reductase 2 (NRZ) and beta subunit" +BW25113_1467__3prime narY__3prime 0 1531368 1531565 -1 233 0.030303030303030304 198 6 "nitrate reductase 2 (NRZ) and beta subunit" +BW25113_1468 narZ 0 1533107 1536847 -1 3796 0.048650093557872226 3741 182 "nitrate reductase 2 (NRZ) and alpha subunit" +BW25113_1468__5prime narZ__5prime 0 1536848 1537045 -1 212 0.06060606060606061 198 12 "nitrate reductase 2 (NRZ) and alpha subunit" +BW25113_1468__3prime narZ__3prime 0 1532909 1533106 -1 549 0.09090909090909091 198 18 "nitrate reductase 2 (NRZ) and alpha subunit" +1536890_1536919 1536890_1536919 0 1536891 1536919 1 76 0.06896551724137931 29 2 "1536890_1536919" +1536890_1536919__5prime 1536890_1536919__5prime 0 1536693 1536890 1 227 0.06565656565656566 198 13 "1536890_1536919" +1536890_1536919__3prime 1536890_1536919__3prime 0 1536920 1537117 1 104 0.04040404040404041 198 8 "1536890_1536919" +BW25113_1469 narU 0 1536929 1538317 -1 3796 0.1238300935925126 1389 172 "nitrate/nitrite transporter" +BW25113_1469__5prime narU__5prime 0 1538318 1538515 -1 1144 0.17676767676767677 198 35 "nitrate/nitrite transporter" +BW25113_1469__3prime narU__3prime 0 1536731 1536928 -1 303 0.07575757575757576 198 15 "nitrate/nitrite transporter" +BW25113_1471 yddK 0 1538641 1539971 -1 2734 0.10518407212622088 1331 140 "1538640_1539971" +BW25113_1471__5prime yddK__5prime 0 1539972 1540169 -1 305 0.11616161616161616 198 23 "1538640_1539971" +BW25113_1471__3prime yddK__3prime 0 1538443 1538640 -1 861 0.12121212121212122 198 24 "1538640_1539971" +BW25113_1472 yddL 0 1540007 1540285 -1 477 0.08602150537634409 279 24 "1540006_1540285" +BW25113_1472__5prime yddL__5prime 0 1540286 1540483 -1 0 0.0 198 0 "1540006_1540285" +BW25113_1472__3prime yddL__3prime 0 1539809 1540006 -1 472 0.18181818181818182 198 36 "1540006_1540285" +BW25113_1473 yddG 0 1540545 1541426 -1 6389 0.24489795918367346 882 216 "aromatic amino acid exporter" +BW25113_1473__5prime yddG__5prime 0 1541427 1541624 -1 140 0.04040404040404041 198 8 "aromatic amino acid exporter" +BW25113_1473__3prime yddG__3prime 0 1540347 1540544 -1 87 0.025252525252525252 198 5 "aromatic amino acid exporter" +BW25113_1474 fdnG 0 1541658 1544705 1 3780 0.06463254593175853 3048 197 "formate dehydrogenase-N and alpha subunit and nitrate-inducible" +BW25113_1474__5prime fdnG__5prime 0 1541460 1541657 1 180 0.07575757575757576 198 15 "formate dehydrogenase-N and alpha subunit and nitrate-inducible" +BW25113_1474__3prime fdnG__3prime 0 1544706 1544903 1 137 0.010101010101010102 198 2 "formate dehydrogenase-N and alpha subunit and nitrate-inducible" +BW25113_1475 fdnH 0 1544718 1545602 1 1083 0.04180790960451977 885 37 "formate dehydrogenase-N and Fe-S (beta) subunit and nitrate-inducible" +BW25113_1475__5prime fdnH__5prime 0 1544520 1544717 1 200 0.06060606060606061 198 12 "formate dehydrogenase-N and Fe-S (beta) subunit and nitrate-inducible" +BW25113_1475__3prime fdnH__3prime 0 1545603 1545800 1 74 0.015151515151515152 198 3 "formate dehydrogenase-N and Fe-S (beta) subunit and nitrate-inducible" +BW25113_1476 fdnI 0 1545595 1546248 1 888 0.0581039755351682 654 38 "formate dehydrogenase-N and cytochrome B556 (gamma) subunit and nitrate-inducible" +BW25113_1476__5prime fdnI__5prime 0 1545397 1545594 1 466 0.0707070707070707 198 14 "formate dehydrogenase-N and cytochrome B556 (gamma) subunit and nitrate-inducible" +BW25113_1476__3prime fdnI__3prime 0 1546249 1546446 1 142 0.04040404040404041 198 8 "formate dehydrogenase-N and cytochrome B556 (gamma) subunit and nitrate-inducible" +1546327_1546424 1546327_1546424 0 1546328 1546424 1 32 0.030927835051546393 97 3 "1546327_1546424" +1546327_1546424__5prime 1546327_1546424__5prime 0 1546130 1546327 1 236 0.050505050505050504 198 10 "1546327_1546424" +1546327_1546424__3prime 1546327_1546424__3prime 0 1546425 1546622 1 107 0.030303030303030304 198 6 "1546327_1546424" +1546505_1546602 1546505_1546602 0 1546506 1546602 1 22 0.020618556701030927 97 2 "1546505_1546602" +1546505_1546602__5prime 1546505_1546602__5prime 0 1546308 1546505 1 117 0.03535353535353535 198 7 "1546505_1546602" +1546505_1546602__3prime 1546505_1546602__3prime 0 1546603 1546800 1 78 0.020202020202020204 198 4 "1546505_1546602" +BW25113_1477 yddM 0 1546655 1546939 -1 152 0.02456140350877193 285 7 "putative DNA-binding transcriptional regulator" +BW25113_1477__5prime yddM__5prime 0 1546940 1547137 -1 54 0.015151515151515152 198 3 "putative DNA-binding transcriptional regulator" +BW25113_1477__3prime yddM__3prime 0 1546457 1546654 -1 107 0.030303030303030304 198 6 "putative DNA-binding transcriptional regulator" +BW25113_1478 adhP 0 1547085 1548095 -1 1158 0.06132542037586548 1011 62 "ethanol-active dehydrogenase/acetaldehyde-active reductase" +BW25113_1478__5prime adhP__5prime 0 1548096 1548293 -1 572 0.09595959595959595 198 19 "ethanol-active dehydrogenase/acetaldehyde-active reductase" +BW25113_1478__3prime adhP__3prime 0 1546887 1547084 -1 33 0.010101010101010102 198 2 "ethanol-active dehydrogenase/acetaldehyde-active reductase" +BW25113_1479 maeA 0 1548229 1549926 -1 3009 0.0706713780918728 1698 120 "malate dehydrogenase and (decarboxylating and NAD-requiring) (malic enzyme)" +BW25113_1479__5prime maeA__5prime 0 1549927 1550124 -1 304 0.10101010101010101 198 20 "malate dehydrogenase and (decarboxylating and NAD-requiring) (malic enzyme)" +BW25113_1479__3prime maeA__3prime 0 1548031 1548228 -1 549 0.1111111111111111 198 22 "malate dehydrogenase and (decarboxylating and NAD-requiring) (malic enzyme)" +BW25113_1480 sra 0 1550083 1550220 -1 306 0.08695652173913043 138 12 "stationary-phase-induced ribosome-associated protein" +BW25113_1480__5prime sra__5prime 0 1550221 1550418 -1 1524 0.22727272727272727 198 45 "stationary-phase-induced ribosome-associated protein" +BW25113_1480__3prime sra__3prime 0 1549885 1550082 -1 314 0.10101010101010101 198 20 "stationary-phase-induced ribosome-associated protein" +BW25113_1481 bdm 0 1550322 1550537 -1 4891 0.3194444444444444 216 69 "biofilm-dependent modulation protein" +BW25113_1481__5prime bdm__5prime 0 1550538 1550735 -1 488 0.06565656565656566 198 13 "biofilm-dependent modulation protein" +BW25113_1481__3prime bdm__3prime 0 1550124 1550321 -1 927 0.1717171717171717 198 34 "biofilm-dependent modulation protein" +BW25113_1482 osmC 0 1550882 1551313 1 892 0.09259259259259259 432 40 "lipoyl-dependent Cys-based peroxidase and hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin" +BW25113_1482__5prime osmC__5prime 0 1550684 1550881 1 707 0.12626262626262627 198 25 "lipoyl-dependent Cys-based peroxidase and hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin" +BW25113_1482__3prime osmC__3prime 0 1551314 1551511 1 249 0.030303030303030304 198 6 "lipoyl-dependent Cys-based peroxidase and hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin" +1551319_1551338 1551319_1551338 0 1551320 1551338 1 0 0.0 19 0 "1551319_1551338" +1551319_1551338__5prime 1551319_1551338__5prime 0 1551122 1551319 1 228 0.05555555555555555 198 11 "1551319_1551338" +1551319_1551338__3prime 1551319_1551338__3prime 0 1551339 1551536 1 266 0.04040404040404041 198 8 "1551319_1551338" +BW25113_1483 ddpF 0 1551369 1552295 -1 1008 0.05070118662351672 927 47 "D and D-dipeptide permease system and ATP-binding component" +BW25113_1483__5prime ddpF__5prime 0 1552296 1552493 -1 305 0.12121212121212122 198 24 "D and D-dipeptide permease system and ATP-binding component" +BW25113_1483__3prime ddpF__3prime 0 1551171 1551368 -1 151 0.05555555555555555 198 11 "D and D-dipeptide permease system and ATP-binding component" +BW25113_1484 ddpD 0 1552288 1553274 -1 788 0.05673758865248227 987 56 "D and D-dipeptide permease system and ATP-binding component" +BW25113_1484__5prime ddpD__5prime 0 1553275 1553472 -1 131 0.050505050505050504 198 10 "D and D-dipeptide permease system and ATP-binding component" +BW25113_1484__3prime ddpD__3prime 0 1552090 1552287 -1 181 0.050505050505050504 198 10 "D and D-dipeptide permease system and ATP-binding component" +BW25113_1485 ddpC 0 1553271 1554167 -1 518 0.03678929765886288 897 33 "D-ala-D-ala transporter subunit" +BW25113_1485__5prime ddpC__5prime 0 1554168 1554365 -1 223 0.07575757575757576 198 15 "D-ala-D-ala transporter subunit" +BW25113_1485__3prime ddpC__3prime 0 1553073 1553270 -1 126 0.045454545454545456 198 9 "D-ala-D-ala transporter subunit" +BW25113_1486 ddpB 0 1554164 1555186 -1 1470 0.05865102639296188 1023 60 "D-ala-D-ala transporter subunit" +BW25113_1486__5prime ddpB__5prime 0 1555187 1555384 -1 235 0.07575757575757576 198 15 "D-ala-D-ala transporter subunit" +BW25113_1486__3prime ddpB__3prime 0 1553966 1554163 -1 6 0.005050505050505051 198 1 "D-ala-D-ala transporter subunit" +BW25113_1487 ddpA 0 1555188 1556738 -1 1152 0.04771115409413282 1551 74 "D-ala-D-a la transporter subunit" +BW25113_1487__5prime ddpA__5prime 0 1556739 1556936 -1 264 0.05555555555555555 198 11 "D-ala-D-a la transporter subunit" +BW25113_1487__3prime ddpA__3prime 0 1554990 1555187 -1 250 0.06060606060606061 198 12 "D-ala-D-a la transporter subunit" +BW25113_1488 ddpX 0 1556752 1557333 -1 590 0.044673539518900345 582 26 "D-ala-D-ala dipeptidase and Zn-dependent" +BW25113_1488__5prime ddpX__5prime 0 1557334 1557531 -1 40 0.020202020202020204 198 4 "D-ala-D-ala dipeptidase and Zn-dependent" +BW25113_1488__3prime ddpX__3prime 0 1556554 1556751 -1 127 0.06060606060606061 198 12 "D-ala-D-ala dipeptidase and Zn-dependent" +BW25113_1489 dosP 0 1557591 1559990 -1 3656 0.058333333333333334 2400 140 "oxygen sensor and c-di-GMP phosphodiesterase and heme-regulated; cold-and stationary phase-induced bioflim regulator" +BW25113_1489__5prime dosP__5prime 0 1559991 1560188 -1 500 0.15151515151515152 198 30 "oxygen sensor and c-di-GMP phosphodiesterase and heme-regulated; cold-and stationary phase-induced bioflim regulator" +BW25113_1489__3prime dosP__3prime 0 1557393 1557590 -1 38 0.020202020202020204 198 4 "oxygen sensor and c-di-GMP phosphodiesterase and heme-regulated; cold-and stationary phase-induced bioflim regulator" +BW25113_1490 dosC 0 1560015 1561397 -1 7324 0.19522776572668113 1383 270 "diguanylate cyclase and cold-and stationary phase-induced oxygen-dependent biofilm regulator" +BW25113_1490__5prime dosC__5prime 0 1561398 1561595 -1 1195 0.17676767676767677 198 35 "diguanylate cyclase and cold-and stationary phase-induced oxygen-dependent biofilm regulator" +BW25113_1490__3prime dosC__3prime 0 1559817 1560014 -1 439 0.10101010101010101 198 20 "diguanylate cyclase and cold-and stationary phase-induced oxygen-dependent biofilm regulator" +BW25113_1491 yddW 0 1561761 1563080 -1 3207 0.07954545454545454 1320 105 "liprotein and glycosyl hydrolase homolog" +BW25113_1491__5prime yddW__5prime 0 1563081 1563278 -1 164 0.0707070707070707 198 14 "liprotein and glycosyl hydrolase homolog" +BW25113_1491__3prime yddW__3prime 0 1561563 1561760 -1 1078 0.15151515151515152 198 30 "liprotein and glycosyl hydrolase homolog" +BW25113_1492 gadC 0 1563211 1564746 -1 3585 0.09830729166666667 1536 151 "glutamate:gamma-aminobutyric acid antiporter" +BW25113_1492__5prime gadC__5prime 0 1564747 1564944 -1 855 0.11616161616161616 198 23 "glutamate:gamma-aminobutyric acid antiporter" +BW25113_1492__3prime gadC__3prime 0 1563013 1563210 -1 73 0.045454545454545456 198 9 "glutamate:gamma-aminobutyric acid antiporter" +BW25113_1493 gadB 0 1564902 1566302 -1 6745 0.19914346895074947 1401 279 "glutamate decarboxylase B and PLP-dependent" +BW25113_1493__5prime gadB__5prime 0 1566303 1566500 -1 127 0.050505050505050504 198 10 "glutamate decarboxylase B and PLP-dependent" +BW25113_1493__3prime gadB__3prime 0 1564704 1564901 -1 766 0.14646464646464646 198 29 "glutamate decarboxylase B and PLP-dependent" +BW25113_1494 pqqL 0 1566664 1569459 -1 9958 0.12339055793991416 2796 345 "putative periplasmic M16 family zinc metalloendopeptidase" +BW25113_1494__5prime pqqL__5prime 0 1569460 1569657 -1 403 0.09090909090909091 198 18 "putative periplasmic M16 family zinc metalloendopeptidase" +BW25113_1494__3prime pqqL__3prime 0 1566466 1566663 -1 79 0.03535353535353535 198 7 "putative periplasmic M16 family zinc metalloendopeptidase" +BW25113_1495 yddB 0 1569504 1571876 -1 12186 0.18541930046354826 2373 440 "putative TonB-dependent outer membrane receptor" +BW25113_1495__5prime yddB__5prime 0 1571877 1572074 -1 1104 0.18181818181818182 198 36 "putative TonB-dependent outer membrane receptor" +BW25113_1495__3prime yddB__3prime 0 1569306 1569503 -1 286 0.07575757575757576 198 15 "putative TonB-dependent outer membrane receptor" +BW25113_1496 yddA 0 1571914 1573599 -1 12417 0.25029655990510086 1686 422 "putative multidrug transporter subunit of ABC superfamily and membrane component/ATP-binding component" +BW25113_1496__5prime yddA__5prime 0 1573600 1573797 -1 39 0.020202020202020204 198 4 "putative multidrug transporter subunit of ABC superfamily and membrane component/ATP-binding component" +BW25113_1496__3prime yddA__3prime 0 1571716 1571913 -1 1059 0.20202020202020202 198 40 "putative multidrug transporter subunit of ABC superfamily and membrane component/ATP-binding component" +BW25113_1497 ydeM 0 1573890 1575047 -1 4961 0.16062176165803108 1158 186 "putative YdeN-specific sulfatase-maturating enzyme" +BW25113_1497__5prime ydeM__5prime 0 1575048 1575245 -1 901 0.15151515151515152 198 30 "putative YdeN-specific sulfatase-maturating enzyme" +BW25113_1497__3prime ydeM__3prime 0 1573692 1573889 -1 432 0.12121212121212122 198 24 "putative YdeN-specific sulfatase-maturating enzyme" +BW25113_1498 ydeN 0 1575099 1576781 -1 9385 0.1925133689839572 1683 324 "putative Ser-type periplasmic non-aryl sulfatase" +BW25113_1498__5prime ydeN__5prime 0 1576782 1576979 -1 0 0.0 198 0 "putative Ser-type periplasmic non-aryl sulfatase" +BW25113_1498__3prime ydeN__3prime 0 1574901 1575098 -1 1132 0.1919191919191919 198 38 "putative Ser-type periplasmic non-aryl sulfatase" +BW25113_1499 ydeO 0 1577183 1577944 -1 2382 0.15091863517060367 762 115 "UV-inducible global regulator and EvgA- and GadE-dependent" +BW25113_1499__5prime ydeO__5prime 0 1577945 1578142 -1 38 0.025252525252525252 198 5 "UV-inducible global regulator and EvgA- and GadE-dependent" +BW25113_1499__3prime ydeO__3prime 0 1576985 1577182 -1 413 0.0707070707070707 198 14 "UV-inducible global regulator and EvgA- and GadE-dependent" +BW25113_1500 safA 0 1578019 1578216 -1 38 0.025252525252525252 198 5 "two-component system connector membrane protein and EvgSA to PhoQP" +BW25113_1500__5prime safA__5prime 0 1578217 1578414 -1 389 0.1111111111111111 198 22 "two-component system connector membrane protein and EvgSA to PhoQP" +BW25113_1500__3prime safA__3prime 0 1577821 1578018 -1 183 0.050505050505050504 198 10 "two-component system connector membrane protein and EvgSA to PhoQP" +BW25113_1501 ydeP 0 1578464 1580743 -1 7178 0.10921052631578948 2280 249 "putative oxidoreductase" +BW25113_1501__5prime ydeP__5prime 0 1580744 1580941 -1 913 0.14646464646464646 198 29 "putative oxidoreductase" +BW25113_1501__3prime ydeP__3prime 0 1578266 1578463 -1 736 0.16161616161616163 198 32 "putative oxidoreductase" +BW25113_1502 ydeQ 0 1581077 1581991 -1 4370 0.18907103825136612 915 173 "putative fimbrial-like adhesin protein" +BW25113_1502__5prime ydeQ__5prime 0 1581992 1582189 -1 801 0.23737373737373738 198 47 "putative fimbrial-like adhesin protein" +BW25113_1502__3prime ydeQ__3prime 0 1580879 1581076 -1 275 0.08080808080808081 198 16 "putative fimbrial-like adhesin protein" +BW25113_1503 ydeR 0 1582050 1582553 -1 3600 0.25992063492063494 504 131 "putative fimbrial-like adhesin protein" +BW25113_1503__5prime ydeR__5prime 0 1582554 1582751 -1 1590 0.25252525252525254 198 50 "putative fimbrial-like adhesin protein" +BW25113_1503__3prime ydeR__3prime 0 1581852 1582049 -1 1208 0.18686868686868688 198 37 "putative fimbrial-like adhesin protein" +BW25113_1504 ydeS 0 1582566 1583096 -1 3102 0.21092278719397364 531 112 "putative fimbrial-like adhesin protein" +BW25113_1504__5prime ydeS__5prime 0 1583097 1583294 -1 1129 0.21212121212121213 198 42 "putative fimbrial-like adhesin protein" +BW25113_1504__3prime ydeS__3prime 0 1582368 1582565 -1 2093 0.2878787878787879 198 57 "putative fimbrial-like adhesin protein" +BW25113_1505 ydeT 0 1583110 1584336 -1 9182 0.22575387123064386 1227 277 "1583109_1584336" +BW25113_1505__5prime ydeT__5prime 0 1584337 1584534 -1 633 0.11616161616161616 198 23 "1583109_1584336" +BW25113_1505__3prime ydeT__3prime 0 1582912 1583109 -1 591 0.09090909090909091 198 18 "1583109_1584336" +BW25113_1506 yneL 0 1584591 1584793 -1 691 0.09852216748768473 203 20 "1584590_1584793" +BW25113_1506__5prime yneL__5prime 0 1584794 1584991 -1 322 0.045454545454545456 198 9 "1584590_1584793" +BW25113_1506__3prime yneL__3prime 0 1584393 1584590 -1 843 0.1717171717171717 198 34 "1584590_1584793" +1585006_1585034 1585006_1585034 0 1585007 1585034 -1 0 0.0 28 0 "1585006_1585034" +1585006_1585034__5prime 1585006_1585034__5prime 0 1585035 1585232 -1 248 0.04040404040404041 198 8 "1585006_1585034" +1585006_1585034__3prime 1585006_1585034__3prime 0 1584809 1585006 -1 322 0.045454545454545456 198 9 "1585006_1585034" +BW25113_1507 hipA 0 1585111 1586433 -1 1458 0.036281179138321996 1323 48 "inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase" +BW25113_1507__5prime hipA__5prime 0 1586434 1586631 -1 0 0.0 198 0 "inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase" +BW25113_1507__3prime hipA__3prime 0 1584913 1585110 -1 135 0.015151515151515152 198 3 "inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase" +BW25113_1508 hipB 0 1586433 1586699 -1 67 0.0149812734082397 267 4 "antitoxin of HipAB toxin-antitoxin system" +BW25113_1508__5prime hipB__5prime 0 1586700 1586897 -1 66 0.04040404040404041 198 8 "antitoxin of HipAB toxin-antitoxin system" +BW25113_1508__3prime hipB__3prime 0 1586235 1586432 -1 294 0.07575757575757576 198 15 "antitoxin of HipAB toxin-antitoxin system" +1586887_1586912 1586887_1586912 0 1586888 1586912 1 58 0.2 25 5 "1586887_1586912" +1586887_1586912__5prime 1586887_1586912__5prime 0 1586690 1586887 1 58 0.03535353535353535 198 7 "1586887_1586912" +1586887_1586912__3prime 1586887_1586912__3prime 0 1586913 1587110 1 16 0.010101010101010102 198 2 "1586887_1586912" +BW25113_4696 yneO 0 1586922 1592244 -1 16968 0.12399023107270336 5323 660 "1586921_1592244" +BW25113_4696__5prime yneO__5prime 0 1592245 1592442 -1 446 0.16666666666666666 198 33 "1586921_1592244" +BW25113_4696__3prime yneO__3prime 0 1586724 1586921 -1 106 0.05555555555555555 198 11 "1586921_1592244" +BW25113_1511 lsrK 0 1592874 1594466 -1 1551 0.05273069679849341 1593 84 "autoinducer-2 (AI-2) kinase" +BW25113_1511__5prime lsrK__5prime 0 1594467 1594664 -1 495 0.05555555555555555 198 11 "autoinducer-2 (AI-2) kinase" +BW25113_1511__3prime lsrK__3prime 0 1592676 1592873 -1 256 0.11616161616161616 198 23 "autoinducer-2 (AI-2) kinase" +BW25113_1512 lsrR 0 1594545 1595498 -1 1804 0.059748427672955975 954 57 "lsr operon transcriptional repressor" +BW25113_1512__5prime lsrR__5prime 0 1595499 1595696 -1 0 0.0 198 0 "lsr operon transcriptional repressor" +BW25113_1512__3prime lsrR__3prime 0 1594347 1594544 -1 398 0.06565656565656566 198 13 "lsr operon transcriptional repressor" +BW25113_1513 lsrA 0 1595747 1597282 1 916 0.033854166666666664 1536 52 "autoinducer 2 import ATP-binding protein" +BW25113_1513__5prime lsrA__5prime 0 1595549 1595746 1 21 0.010101010101010102 198 2 "autoinducer 2 import ATP-binding protein" +BW25113_1513__3prime lsrA__3prime 0 1597283 1597480 1 457 0.08585858585858586 198 17 "autoinducer 2 import ATP-binding protein" +BW25113_1514 lsrC 0 1597276 1598304 1 1204 0.05442176870748299 1029 56 "autoinducer 2 import system permease protein" +BW25113_1514__5prime lsrC__5prime 0 1597078 1597275 1 208 0.06565656565656566 198 13 "autoinducer 2 import system permease protein" +BW25113_1514__3prime lsrC__3prime 0 1598305 1598502 1 78 0.03535353535353535 198 7 "autoinducer 2 import system permease protein" +BW25113_1515 lsrD 0 1598304 1599296 1 885 0.04934541792547835 993 49 "autoinducer 2 import system permease protein" +BW25113_1515__5prime lsrD__5prime 0 1598106 1598303 1 172 0.05555555555555555 198 11 "autoinducer 2 import system permease protein" +BW25113_1515__3prime lsrD__3prime 0 1599297 1599494 1 268 0.04040404040404041 198 8 "autoinducer 2 import system permease protein" +BW25113_1516 lsrB 0 1599308 1600330 1 1066 0.047898338220918865 1023 49 "autoinducer 2-binding protein" +BW25113_1516__5prime lsrB__5prime 0 1599110 1599307 1 135 0.07575757575757576 198 15 "autoinducer 2-binding protein" +BW25113_1516__3prime lsrB__3prime 0 1600331 1600528 1 505 0.13636363636363635 198 27 "autoinducer 2-binding protein" +BW25113_1517 lsrF 0 1600357 1601232 1 3009 0.1506849315068493 876 132 "putative autoinducer-2 (AI-2) aldolase" +BW25113_1517__5prime lsrF__5prime 0 1600159 1600356 1 323 0.0707070707070707 198 14 "putative autoinducer-2 (AI-2) aldolase" +BW25113_1517__3prime lsrF__3prime 0 1601233 1601430 1 190 0.050505050505050504 198 10 "putative autoinducer-2 (AI-2) aldolase" +BW25113_1518 lsrG 0 1601256 1601546 1 224 0.037800687285223365 291 11 "autoinducer-2 (AI-2) degrading protein LsrG" +BW25113_1518__5prime lsrG__5prime 0 1601058 1601255 1 723 0.14646464646464646 198 29 "autoinducer-2 (AI-2) degrading protein LsrG" +BW25113_1518__3prime lsrG__3prime 0 1601547 1601744 1 216 0.03535353535353535 198 7 "autoinducer-2 (AI-2) degrading protein LsrG" +BW25113_1519 tam 0 1601603 1602361 1 1068 0.04084321475625823 759 31 "trans-aconitate methyltransferase" +BW25113_1519__5prime tam__5prime 0 1601405 1601602 1 75 0.020202020202020204 198 4 "trans-aconitate methyltransferase" +BW25113_1519__3prime tam__3prime 0 1602362 1602559 1 139 0.03535353535353535 198 7 "trans-aconitate methyltransferase" +BW25113_1520 yneE 0 1602365 1603279 -1 1203 0.06994535519125683 915 64 "bestrophin family putative inner membrane protein" +BW25113_1520__5prime yneE__5prime 0 1603280 1603477 -1 295 0.0707070707070707 198 14 "bestrophin family putative inner membrane protein" +BW25113_1520__3prime yneE__3prime 0 1602167 1602364 -1 462 0.05555555555555555 198 11 "bestrophin family putative inner membrane protein" +BW25113_1521 uxaB 0 1603486 1604937 -1 2127 0.07300275482093664 1452 106 "altronate oxidoreductase and NAD-dependent" +BW25113_1521__5prime uxaB__5prime 0 1604938 1605135 -1 62 0.015151515151515152 198 3 "altronate oxidoreductase and NAD-dependent" +BW25113_1521__3prime uxaB__3prime 0 1603288 1603485 -1 277 0.06565656565656566 198 13 "altronate oxidoreductase and NAD-dependent" +BW25113_1522 yneF 0 1605164 1606111 -1 907 0.05168776371308017 948 49 "putative membrane-bound diguanylate cyclase" +BW25113_1522__5prime yneF__5prime 0 1606112 1606309 -1 235 0.0707070707070707 198 14 "putative membrane-bound diguanylate cyclase" +BW25113_1522__3prime yneF__3prime 0 1604966 1605163 -1 83 0.020202020202020204 198 4 "putative membrane-bound diguanylate cyclase" +BW25113_1523 yneG 0 1606223 1606582 -1 454 0.04722222222222222 360 17 "DUF4186 family protein" +BW25113_1523__5prime yneG__5prime 0 1606583 1606780 -1 262 0.06060606060606061 198 12 "DUF4186 family protein" +BW25113_1523__3prime yneG__3prime 0 1606025 1606222 -1 343 0.08080808080808081 198 16 "DUF4186 family protein" +BW25113_1524 glsB 0 1606582 1607508 -1 1020 0.04746494066882417 927 44 "glutaminase 2" +BW25113_1524__5prime glsB__5prime 0 1607509 1607706 -1 451 0.16666666666666666 198 33 "glutaminase 2" +BW25113_1524__3prime glsB__3prime 0 1606384 1606581 -1 96 0.025252525252525252 198 5 "glutaminase 2" +BW25113_1525 sad 0 1607572 1608960 -1 1712 0.058315334773218146 1389 81 "succinate semialdehyde dehydrogenase and NAD(P)+-dependent" +BW25113_1525__5prime sad__5prime 0 1608961 1609158 -1 171 0.06060606060606061 198 12 "succinate semialdehyde dehydrogenase and NAD(P)+-dependent" +BW25113_1525__3prime sad__3prime 0 1607374 1607571 -1 217 0.10606060606060606 198 21 "succinate semialdehyde dehydrogenase and NAD(P)+-dependent" +BW25113_1526 yneJ 0 1609061 1609942 1 2018 0.09750566893424037 882 86 "putative DNA-binding transcriptional regulator" +BW25113_1526__5prime yneJ__5prime 0 1608863 1609060 1 148 0.04040404040404041 198 8 "putative DNA-binding transcriptional regulator" +BW25113_1526__3prime yneJ__3prime 0 1609943 1610140 1 1402 0.2828282828282828 198 56 "putative DNA-binding transcriptional regulator" +BW25113_1527 yneK 0 1610020 1611135 1 3683 0.13440860215053763 1116 150 "uncharacterized protein" +BW25113_1527__5prime yneK__5prime 0 1609822 1610019 1 1859 0.30808080808080807 198 61 "uncharacterized protein" +BW25113_1527__3prime yneK__3prime 0 1611136 1611333 1 196 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_1528 ydeA 0 1611285 1612475 1 1801 0.0764063811922754 1191 91 "arabinose efflux transporter and arabinose-inducible" +BW25113_1528__5prime ydeA__5prime 0 1611087 1611284 1 401 0.06565656565656566 198 13 "arabinose efflux transporter and arabinose-inducible" +BW25113_1528__3prime ydeA__3prime 0 1612476 1612673 1 224 0.05555555555555555 198 11 "arabinose efflux transporter and arabinose-inducible" +BW25113_1529 marC 0 1612500 1613165 -1 759 0.052552552552552555 666 35 "UPF0056 family inner membrane protein" +BW25113_1529__5prime marC__5prime 0 1613166 1613363 -1 558 0.09090909090909091 198 18 "UPF0056 family inner membrane protein" +BW25113_1529__3prime marC__3prime 0 1612302 1612499 -1 277 0.08080808080808081 198 16 "UPF0056 family inner membrane protein" +BW25113_1530 marR 0 1613377 1613811 1 1050 0.09195402298850575 435 40 "transcriptional repressor of multiple antibiotic resistance" +BW25113_1530__5prime marR__5prime 0 1613179 1613376 1 558 0.09090909090909091 198 18 "transcriptional repressor of multiple antibiotic resistance" +BW25113_1530__3prime marR__3prime 0 1613812 1614009 1 260 0.13131313131313133 198 26 "transcriptional repressor of multiple antibiotic resistance" +BW25113_1531 marA 0 1613831 1614214 1 603 0.11979166666666667 384 46 "multiple antibiotic resistance transcriptional regulator" +BW25113_1531__5prime marA__5prime 0 1613633 1613830 1 247 0.030303030303030304 198 6 "multiple antibiotic resistance transcriptional regulator" +BW25113_1531__3prime marA__3prime 0 1614215 1614412 1 41 0.020202020202020204 198 4 "multiple antibiotic resistance transcriptional regulator" +BW25113_1532 marB 0 1614246 1614464 1 120 0.0410958904109589 219 9 "mar operon regulator and periplasmic" +BW25113_1532__5prime marB__5prime 0 1614048 1614245 1 308 0.08080808080808081 198 16 "mar operon regulator and periplasmic" +BW25113_1532__3prime marB__3prime 0 1614465 1614662 1 437 0.09595959595959595 198 19 "mar operon regulator and periplasmic" +BW25113_1533 eamA 0 1614495 1615394 -1 1078 0.05555555555555555 900 50 "cysteine and O-acetyl-L-serine efflux system" +BW25113_1533__5prime eamA__5prime 0 1615395 1615592 -1 24 0.015151515151515152 198 3 "cysteine and O-acetyl-L-serine efflux system" +BW25113_1533__3prime eamA__3prime 0 1614297 1614494 -1 151 0.06060606060606061 198 12 "cysteine and O-acetyl-L-serine efflux system" +BW25113_1534 ydeE 0 1615589 1616776 1 4252 0.12878787878787878 1188 153 "putative transporter" +BW25113_1534__5prime ydeE__5prime 0 1615391 1615588 1 24 0.015151515151515152 198 3 "putative transporter" +BW25113_1534__3prime ydeE__3prime 0 1616777 1616974 1 719 0.1414141414141414 198 28 "putative transporter" +BW25113_4599 yneM 0 1616903 1616998 1 372 0.19791666666666666 96 19 "inner membrane-associated protein" +BW25113_4599__5prime yneM__5prime 0 1616705 1616902 1 1048 0.23737373737373738 198 47 "inner membrane-associated protein" +BW25113_4599__3prime yneM__3prime 0 1616999 1617196 1 2994 0.3434343434343434 198 68 "inner membrane-associated protein" +BW25113_4698 mgrR 0 1617074 1617171 -1 609 0.23469387755102042 98 23 "sRNA antisense regulator down regulates YgdQ and EptB and PhoPQ-regulated and Hfq-dependent; affects sensitivity to antimicrobial peptides" +BW25113_4698__5prime mgrR__5prime 0 1617172 1617369 -1 2809 0.3434343434343434 198 68 "sRNA antisense regulator down regulates YgdQ and EptB and PhoPQ-regulated and Hfq-dependent; affects sensitivity to antimicrobial peptides" +BW25113_4698__3prime mgrR__3prime 0 1616876 1617073 -1 2917 0.31313131313131315 198 62 "sRNA antisense regulator down regulates YgdQ and EptB and PhoPQ-regulated and Hfq-dependent; affects sensitivity to antimicrobial peptides" +BW25113_1535 dgcZ 0 1617217 1618107 -1 9498 0.28619528619528617 891 255 "diguanylate cyclase and zinc-sensing" +BW25113_1535__5prime dgcZ__5prime 0 1618108 1618305 -1 487 0.11616161616161616 198 23 "diguanylate cyclase and zinc-sensing" +BW25113_1535__3prime dgcZ__3prime 0 1617019 1617216 -1 2992 0.30808080808080807 198 61 "diguanylate cyclase and zinc-sensing" +BW25113_1536 ydeI 0 1618362 1618754 -1 1973 0.22391857506361323 393 88 "hydrogen peroxide resistance OB fold protein; putative periplasmic protein" +BW25113_1536__5prime ydeI__5prime 0 1618755 1618952 -1 268 0.04040404040404041 198 8 "hydrogen peroxide resistance OB fold protein; putative periplasmic protein" +BW25113_1536__3prime ydeI__3prime 0 1618164 1618361 -1 545 0.08585858585858586 198 17 "hydrogen peroxide resistance OB fold protein; putative periplasmic protein" +BW25113_1537 ydeJ 0 1619030 1619548 1 2085 0.16955684007707128 519 88 "inactive PncC family protein" +BW25113_1537__5prime ydeJ__5prime 0 1618832 1619029 1 201 0.025252525252525252 198 5 "inactive PncC family protein" +BW25113_1537__3prime ydeJ__3prime 0 1619549 1619746 1 480 0.10101010101010101 198 20 "inactive PncC family protein" +BW25113_1538 dcp 0 1619592 1621637 -1 3949 0.08944281524926687 2046 183 "dipeptidyl carboxypeptidase II" +BW25113_1538__5prime dcp__5prime 0 1621638 1621835 -1 424 0.08080808080808081 198 16 "dipeptidyl carboxypeptidase II" +BW25113_1538__3prime dcp__3prime 0 1619394 1619591 -1 319 0.11616161616161616 198 23 "dipeptidyl carboxypeptidase II" +BW25113_1539 ydfG 0 1621774 1622520 1 530 0.03748326639892905 747 28 "NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase" +BW25113_1539__5prime ydfG__5prime 0 1621576 1621773 1 523 0.11616161616161616 198 23 "NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase" +BW25113_1539__3prime ydfG__3prime 0 1622521 1622718 1 70 0.025252525252525252 198 5 "NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase" +BW25113_1540 rspR 0 1622609 1623295 1 358 0.023289665211062592 687 16 "transcriptional repressor for rspAB" +BW25113_1540__5prime rspR__5prime 0 1622411 1622608 1 100 0.04040404040404041 198 8 "transcriptional repressor for rspAB" +BW25113_1540__3prime rspR__3prime 0 1623296 1623493 1 96 0.04040404040404041 198 8 "transcriptional repressor for rspAB" +BW25113_1541 ydfZ 0 1623472 1623675 1 169 0.058823529411764705 204 12 "selenoprotein and function unknown" +BW25113_1541__5prime ydfZ__5prime 0 1623274 1623471 1 52 0.025252525252525252 198 5 "selenoprotein and function unknown" +BW25113_1541__3prime ydfZ__3prime 0 1623676 1623873 1 283 0.05555555555555555 198 11 "selenoprotein and function unknown" +BW25113_1542 ydfI 0 1623710 1625170 -1 2218 0.06707734428473648 1461 98 "putative NAD-dependent D-mannonate oxidoreductase" +BW25113_1542__5prime ydfI__5prime 0 1625171 1625368 -1 968 0.20202020202020202 198 40 "putative NAD-dependent D-mannonate oxidoreductase" +BW25113_1542__3prime ydfI__3prime 0 1623512 1623709 -1 250 0.05555555555555555 198 11 "putative NAD-dependent D-mannonate oxidoreductase" +BW25113_4600 ydfJ 0 1625259 1647095 -1 67463 0.12446764665476028 21837 2718 "1625258_1647095" +BW25113_4600__5prime ydfJ__5prime 0 1647096 1647293 -1 523 0.13131313131313133 198 26 "1625258_1647095" +BW25113_4600__3prime ydfJ__3prime 0 1625061 1625258 -1 519 0.10606060606060606 198 21 "1625258_1647095" +1626542_1647000 1626542_1647000 0 1626543 1647000 -1 60219 0.11902434255547951 20458 2435 "1626542_1647000" +1626542_1647000__5prime 1626542_1647000__5prime 0 1647001 1647198 -1 1276 0.17676767676767677 198 35 "1626542_1647000" +1626542_1647000__3prime 1626542_1647000__3prime 0 1626345 1626542 -1 704 0.16666666666666666 198 33 "1626542_1647000" +BW25113_1544 ydfK 0 1627329 1627562 1 1998 0.32051282051282054 234 75 "cold shock protein and function unknown and Qin prophage" +BW25113_1544__5prime ydfK__5prime 0 1627131 1627328 1 778 0.2474747474747475 198 49 "cold shock protein and function unknown and Qin prophage" +BW25113_1544__3prime ydfK__3prime 0 1627563 1627760 1 294 0.11616161616161616 198 23 "cold shock protein and function unknown and Qin prophage" +BW25113_1545 pinQ 0 1627879 1628469 1 5148 0.2639593908629442 591 156 "Qin prophage; putative site-specific recombinase" +BW25113_1545__5prime pinQ__5prime 0 1627681 1627878 1 254 0.08080808080808081 198 16 "Qin prophage; putative site-specific recombinase" +BW25113_1545__3prime pinQ__3prime 0 1628470 1628667 1 1323 0.19696969696969696 198 39 "Qin prophage; putative site-specific recombinase" +BW25113_1546 tfaQ 0 1628567 1629142 -1 2545 0.19444444444444445 576 112 "Qin prophage; putative tail fiber assembly protein" +BW25113_1546__5prime tfaQ__5prime 0 1629143 1629340 -1 987 0.1717171717171717 198 34 "Qin prophage; putative tail fiber assembly protein" +BW25113_1546__3prime tfaQ__3prime 0 1628369 1628566 -1 421 0.12626262626262627 198 25 "Qin prophage; putative tail fiber assembly protein" +BW25113_1547 stfQ 0 1629142 1630104 -1 2023 0.08618899273104881 963 83 "Qin prophage; putative side tail fiber assembly protein" +BW25113_1547__5prime stfQ__5prime 0 1630105 1630302 -1 168 0.06060606060606061 198 12 "Qin prophage; putative side tail fiber assembly protein" +BW25113_1547__3prime stfQ__3prime 0 1628944 1629141 -1 502 0.15656565656565657 198 31 "Qin prophage; putative side tail fiber assembly protein" +BW25113_1548 nohQ 0 1630097 1630624 -1 609 0.058712121212121215 528 31 "1630096_1630624" +BW25113_1548__5prime nohQ__5prime 0 1630625 1630822 -1 15 0.005050505050505051 198 1 "1630096_1630624" +BW25113_1548__3prime nohQ__3prime 0 1629899 1630096 -1 251 0.0707070707070707 198 14 "1630096_1630624" +BW25113_4533 ynfO 0 1631013 1631246 1 653 0.14102564102564102 234 33 "uncharacterized protein and Qin prophage" +BW25113_4533__5prime ynfO__5prime 0 1630815 1631012 1 200 0.08080808080808081 198 16 "uncharacterized protein and Qin prophage" +BW25113_4533__3prime ynfO__3prime 0 1631247 1631444 1 469 0.12626262626262627 198 25 "uncharacterized protein and Qin prophage" +BW25113_1549 ydfO 0 1631304 1631714 1 348 0.06569343065693431 411 27 "Qin prophage; uncharacterized protein" +BW25113_1549__5prime ydfO__5prime 0 1631106 1631303 1 1000 0.23232323232323232 198 46 "Qin prophage; uncharacterized protein" +BW25113_1549__3prime ydfO__3prime 0 1631715 1631912 1 209 0.05555555555555555 198 11 "Qin prophage; uncharacterized protein" +BW25113_1550 gnsB 0 1631866 1632039 -1 31 0.011494252873563218 174 2 "Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts)" +BW25113_1550__5prime gnsB__5prime 0 1632040 1632237 -1 340 0.09090909090909091 198 18 "Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts)" +BW25113_1550__3prime gnsB__3prime 0 1631668 1631865 -1 289 0.09595959595959595 198 19 "Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts)" +BW25113_1551 ynfN 0 1632211 1632366 -1 335 0.10256410256410256 156 16 "Qin prophage; cold shock-induced protein" +BW25113_1551__5prime ynfN__5prime 0 1632367 1632564 -1 408 0.10101010101010101 198 20 "Qin prophage; cold shock-induced protein" +BW25113_1551__3prime ynfN__3prime 0 1632013 1632210 -1 280 0.0707070707070707 198 14 "Qin prophage; cold shock-induced protein" +BW25113_1552 cspI 0 1632712 1632924 -1 1302 0.20657276995305165 213 44 "Qin prophage; cold shock protein" +BW25113_1552__5prime cspI__5prime 0 1632925 1633122 -1 59 0.025252525252525252 198 5 "Qin prophage; cold shock protein" +BW25113_1552__3prime cspI__3prime 0 1632514 1632711 -1 527 0.1414141414141414 198 28 "Qin prophage; cold shock protein" +BW25113_1553 rzpQ 0 1633287 1633784 -1 1031 0.11244979919678715 498 56 "Rz-like protein and Qin prophage" +BW25113_1553__5prime rzpQ__5prime 0 1633785 1633982 -1 510 0.1717171717171717 198 34 "Rz-like protein and Qin prophage" +BW25113_1553__3prime rzpQ__3prime 0 1633089 1633286 -1 46 0.015151515151515152 198 3 "Rz-like protein and Qin prophage" +BW25113_4689 rzoQ 0 1633337 1633591 -1 733 0.1607843137254902 255 41 "putative Rz1-like lipoprotein and Qin prophage" +BW25113_4689__5prime rzoQ__5prime 0 1633592 1633789 -1 270 0.06565656565656566 198 13 "putative Rz1-like lipoprotein and Qin prophage" +BW25113_4689__3prime rzoQ__3prime 0 1633139 1633336 -1 59 0.030303030303030304 198 6 "putative Rz1-like lipoprotein and Qin prophage" +BW25113_1554 rrrQ 0 1633781 1634314 -1 1257 0.12359550561797752 534 66 "Qin prophage; putative lysozyme" +BW25113_1554__5prime rrrQ__5prime 0 1634315 1634512 -1 153 0.050505050505050504 198 10 "Qin prophage; putative lysozyme" +BW25113_1554__3prime rrrQ__3prime 0 1633583 1633780 -1 248 0.045454545454545456 198 9 "Qin prophage; putative lysozyme" +BW25113_1555 ydfR 0 1634311 1634622 -1 343 0.08012820512820513 312 25 "Qin prophage; uncharacterized protein" +BW25113_1555__5prime ydfR__5prime 0 1634623 1634820 -1 418 0.14646464646464646 198 29 "Qin prophage; uncharacterized protein" +BW25113_1555__3prime ydfR__3prime 0 1634113 1634310 -1 560 0.1111111111111111 198 22 "Qin prophage; uncharacterized protein" +BW25113_1556 essQ 0 1634627 1634842 -1 501 0.1574074074074074 216 34 "Qin prophage; putative S lysis protein" +BW25113_1556__5prime essQ__5prime 0 1634843 1635040 -1 482 0.14646464646464646 198 29 "Qin prophage; putative S lysis protein" +BW25113_1556__3prime essQ__3prime 0 1634429 1634626 -1 190 0.07575757575757576 198 15 "Qin prophage; putative S lysis protein" +BW25113_1557 cspB 0 1635596 1635811 -1 489 0.07407407407407407 216 16 "Qin prophage; cold shock protein" +BW25113_1557__5prime cspB__5prime 0 1635812 1636009 -1 259 0.0707070707070707 198 14 "Qin prophage; cold shock protein" +BW25113_1557__3prime cspB__3prime 0 1635398 1635595 -1 929 0.10606060606060606 198 21 "Qin prophage; cold shock protein" +BW25113_1558 cspF 0 1636112 1636324 1 934 0.1643192488262911 213 35 "Qin prophage; cold shock protein" +BW25113_1558__5prime cspF__5prime 0 1635914 1636111 1 1334 0.16161616161616163 198 32 "Qin prophage; cold shock protein" +BW25113_1558__3prime cspF__3prime 0 1636325 1636522 1 435 0.15151515151515152 198 30 "Qin prophage; cold shock protein" +BW25113_1559 quuQ 0 1636746 1637498 -1 1024 0.0796812749003984 753 60 "Qin prophage; putative antitermination protein Q" +BW25113_1559__5prime quuQ__5prime 0 1637499 1637696 -1 157 0.025252525252525252 198 5 "Qin prophage; putative antitermination protein Q" +BW25113_1559__3prime quuQ__3prime 0 1636548 1636745 -1 207 0.03535353535353535 198 7 "Qin prophage; putative antitermination protein Q" +BW25113_1560 ydfU 0 1637512 1638561 -1 1596 0.047619047619047616 1050 50 "Qin prophage; uncharacterized protein" +BW25113_1560__5prime ydfU__5prime 0 1638562 1638759 -1 1078 0.12121212121212122 198 24 "Qin prophage; uncharacterized protein" +BW25113_1560__3prime ydfU__3prime 0 1637314 1637511 -1 165 0.04040404040404041 198 8 "Qin prophage; uncharacterized protein" +BW25113_1561 rem 0 1638908 1639159 -1 698 0.10714285714285714 252 27 "Qin prophage; uncharacterized protein" +BW25113_1561__5prime rem__5prime 0 1639160 1639357 -1 500 0.16666666666666666 198 33 "Qin prophage; uncharacterized protein" +BW25113_1561__3prime rem__3prime 0 1638710 1638907 -1 1922 0.21717171717171718 198 43 "Qin prophage; uncharacterized protein" +BW25113_1562 hokD 0 1639376 1639531 -1 211 0.04487179487179487 156 7 "Qin prophage; small toxic polypeptide" +BW25113_1562__5prime hokD__5prime 0 1639532 1639729 -1 165 0.03535353535353535 198 7 "Qin prophage; small toxic polypeptide" +BW25113_1562__3prime hokD__3prime 0 1639178 1639375 -1 467 0.15656565656565657 198 31 "Qin prophage; small toxic polypeptide" +BW25113_1563 relE 0 1639603 1639890 -1 413 0.059027777777777776 288 17 "Qin prophage; toxin of the RelE-RelB toxin-antitoxin system" +BW25113_1563__5prime relE__5prime 0 1639891 1640088 -1 12 0.010101010101010102 198 2 "Qin prophage; toxin of the RelE-RelB toxin-antitoxin system" +BW25113_1563__3prime relE__3prime 0 1639405 1639602 -1 224 0.04040404040404041 198 8 "Qin prophage; toxin of the RelE-RelB toxin-antitoxin system" +BW25113_1564 relB 0 1639890 1640129 -1 46 0.025 240 6 "Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor" +BW25113_1564__5prime relB__5prime 0 1640130 1640327 -1 471 0.14646464646464646 198 29 "Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor" +BW25113_1564__3prime relB__3prime 0 1639692 1639889 -1 318 0.07575757575757576 198 15 "Qin prophage; bifunctional antitoxin of the RelE-RelB toxin-antitoxin system/ transcriptional repressor" +BW25113_1565 ydfV 0 1640154 1640459 1 1748 0.24183006535947713 306 74 "Qin prophage; uncharacterized protein" +BW25113_1565__5prime ydfV__5prime 0 1639956 1640153 1 65 0.03535353535353535 198 7 "Qin prophage; uncharacterized protein" +BW25113_1565__3prime ydfV__3prime 0 1640460 1640657 1 248 0.09595959595959595 198 19 "Qin prophage; uncharacterized protein" +BW25113_1566 flxA 0 1640662 1640994 1 1310 0.18018018018018017 333 60 "Qin prophage; uncharacterized protein" +BW25113_1566__5prime flxA__5prime 0 1640464 1640661 1 221 0.08080808080808081 198 16 "Qin prophage; uncharacterized protein" +BW25113_1566__3prime flxA__3prime 0 1640995 1641192 1 1258 0.15656565656565657 198 31 "Qin prophage; uncharacterized protein" +BW25113_1567 intK 0 1641431 1641613 -1 433 0.08743169398907104 183 16 "1641430_1641613" +BW25113_1567__5prime intK__5prime 0 1641614 1641811 -1 244 0.08585858585858586 198 17 "1641430_1641613" +BW25113_1567__3prime intK__3prime 0 1641233 1641430 -1 1399 0.17676767676767677 198 35 "1641430_1641613" +BW25113_1568 ydfX 0 1641615 1641893 -1 364 0.07526881720430108 279 21 "1641614_1641893" +BW25113_1568__5prime ydfX__5prime 0 1641894 1642091 -1 48 0.010101010101010102 198 2 "1641614_1641893" +BW25113_1568__3prime ydfX__3prime 0 1641417 1641614 -1 439 0.08585858585858586 198 17 "1641614_1641893" +BW25113_1569 dicC 0 1641877 1642107 -1 144 0.017316017316017316 231 4 "Qin prophage; DNA-binding transcriptional regulator for DicB" +BW25113_1569__5prime dicC__5prime 0 1642108 1642305 -1 0 0.0 198 0 "Qin prophage; DNA-binding transcriptional regulator for DicB" +BW25113_1569__3prime dicC__3prime 0 1641679 1641876 -1 223 0.07575757575757576 198 15 "Qin prophage; DNA-binding transcriptional regulator for DicB" +BW25113_1570 dicA 0 1642191 1642598 1 0 0.0 408 0 "Qin prophage; putative regulator for DicB" +BW25113_1570__5prime dicA__5prime 0 1641993 1642190 1 7 0.005050505050505051 198 1 "Qin prophage; putative regulator for DicB" +BW25113_1570__3prime dicA__3prime 0 1642599 1642796 1 82 0.025252525252525252 198 5 "Qin prophage; putative regulator for DicB" +BW25113_1571 ydfA 0 1642765 1642920 1 38 0.02564102564102564 156 4 "Qin prophage; uncharacterized protein" +BW25113_1571__5prime ydfA__5prime 0 1642567 1642764 1 53 0.010101010101010102 198 2 "Qin prophage; uncharacterized protein" +BW25113_1571__3prime ydfA__3prime 0 1642921 1643118 1 56 0.020202020202020204 198 4 "Qin prophage; uncharacterized protein" +BW25113_1572 ydfB 0 1642922 1643050 1 32 0.015503875968992248 129 2 "Qin prophage; uncharacterized protein" +BW25113_1572__5prime ydfB__5prime 0 1642724 1642921 1 47 0.025252525252525252 198 5 "Qin prophage; uncharacterized protein" +BW25113_1572__3prime ydfB__3prime 0 1643051 1643248 1 254 0.030303030303030304 198 6 "Qin prophage; uncharacterized protein" +BW25113_1573 ydfC 0 1643080 1643298 1 254 0.0273972602739726 219 6 "uncharacterized protein and Qin prophage" +BW25113_1573__5prime ydfC__5prime 0 1642882 1643079 1 32 0.010101010101010102 198 2 "uncharacterized protein and Qin prophage" +BW25113_1573__3prime ydfC__3prime 0 1643299 1643496 1 186 0.04040404040404041 198 8 "uncharacterized protein and Qin prophage" +BW25113_1574 dicF 0 1643639 1643691 1 41 0.018867924528301886 53 1 "sRNA antisense regulator and inhibits ftsZ and Hfq-dependent; Qin prophage" +BW25113_1574__5prime dicF__5prime 0 1643441 1643638 1 155 0.03535353535353535 198 7 "sRNA antisense regulator and inhibits ftsZ and Hfq-dependent; Qin prophage" +BW25113_1574__3prime dicF__3prime 0 1643692 1643889 1 340 0.05555555555555555 198 11 "sRNA antisense regulator and inhibits ftsZ and Hfq-dependent; Qin prophage" +BW25113_1575 dicB 0 1643866 1644054 1 741 0.1746031746031746 189 33 "Qin prophage; cell division inhibition protein" +BW25113_1575__5prime dicB__5prime 0 1643668 1643865 1 270 0.030303030303030304 198 6 "Qin prophage; cell division inhibition protein" +BW25113_1575__3prime dicB__3prime 0 1644055 1644252 1 3313 0.19696969696969696 198 39 "Qin prophage; cell division inhibition protein" +BW25113_1576 ydfD 0 1644051 1644242 1 3313 0.203125 192 39 "Qin prophage; uncharacterized protein" +BW25113_1576__5prime ydfD__5prime 0 1643853 1644050 1 741 0.16666666666666666 198 33 "Qin prophage; uncharacterized protein" +BW25113_1576__3prime ydfD__3prime 0 1644243 1644440 1 1244 0.26262626262626265 198 52 "Qin prophage; uncharacterized protein" +BW25113_1577 ydfE 0 1644335 1645099 1 2970 0.1503267973856209 765 115 "1644334_1645099" +BW25113_1577__5prime ydfE__5prime 0 1644137 1644334 1 3030 0.23737373737373738 198 47 "1644334_1645099" +BW25113_1577__3prime ydfE__3prime 0 1645100 1645297 1 283 0.12121212121212122 198 24 "1644334_1645099" +BW25113_1578 insD1 0 1645102 1645794 1 2998 0.25685425685425683 693 178 "1645101_1645794" +BW25113_1578__5prime insD1__5prime 0 1644904 1645101 1 103 0.045454545454545456 198 9 "1645101_1645794" +BW25113_1578__3prime insD1__3prime 0 1645795 1645992 1 684 0.14646464646464646 198 29 "1645101_1645794" +BW25113_1579 intQ 0 1645808 1646965 1 5690 0.17357512953367876 1158 201 "1645807_1646965" +BW25113_1579__5prime intQ__5prime 0 1645610 1645807 1 1667 0.4797979797979798 198 95 "1645807_1646965" +BW25113_1579__3prime intQ__3prime 0 1646966 1647163 1 1250 0.16666666666666666 198 33 "1645807_1646965" +BW25113_1579 intQ 0 1646588 1646588 1 16 1.0 1 1 "1646587_1646588" +BW25113_1579__5prime intQ__5prime 0 1646390 1646587 1 1536 0.21212121212121213 198 42 "1646587_1646588" +BW25113_1579__3prime intQ__3prime 0 1646589 1646786 1 1388 0.2777777777777778 198 55 "1646587_1646588" +BW25113_1580 rspB 0 1647153 1648172 -1 4824 0.14607843137254903 1020 149 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1580__5prime rspB__5prime 0 1648173 1648370 -1 492 0.13131313131313133 198 26 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1580__3prime rspB__3prime 0 1646955 1647152 -1 1250 0.16666666666666666 198 33 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1581 rspA 0 1648184 1649398 -1 1454 0.0551440329218107 1215 67 "bifunctional D-altronate/D-mannonate dehydratase" +BW25113_1581__5prime rspA__5prime 0 1649399 1649596 -1 78 0.010101010101010102 198 2 "bifunctional D-altronate/D-mannonate dehydratase" +BW25113_1581__3prime rspA__3prime 0 1647986 1648183 -1 286 0.07575757575757576 198 15 "bifunctional D-altronate/D-mannonate dehydratase" +BW25113_1582 ynfA 0 1649604 1649930 -1 525 0.0672782874617737 327 22 "UPF0060 family inner membrane protein" +BW25113_1582__5prime ynfA__5prime 0 1649931 1650128 -1 455 0.10101010101010101 198 20 "UPF0060 family inner membrane protein" +BW25113_1582__3prime ynfA__3prime 0 1649406 1649603 -1 8 0.005050505050505051 198 1 "UPF0060 family inner membrane protein" +BW25113_1583 ynfB 0 1650065 1650406 1 914 0.1111111111111111 342 38 "UPF0482 family putative periplasmic protein" +BW25113_1583__5prime ynfB__5prime 0 1649867 1650064 1 312 0.08080808080808081 198 16 "UPF0482 family putative periplasmic protein" +BW25113_1583__3prime ynfB__3prime 0 1650407 1650604 1 870 0.15656565656565657 198 31 "UPF0482 family putative periplasmic protein" +BW25113_1584 speG 0 1650441 1651001 1 2580 0.18181818181818182 561 102 "spermidine N1-acetyltransferase" +BW25113_1584__5prime speG__5prime 0 1650243 1650440 1 586 0.15656565656565657 198 31 "spermidine N1-acetyltransferase" +BW25113_1584__3prime speG__3prime 0 1651002 1651199 1 914 0.13131313131313133 198 26 "spermidine N1-acetyltransferase" +1650842_1651548 1650842_1651548 0 1650843 1651548 1 3126 0.16572237960339944 706 117 "1650842_1651548" +1650842_1651548__5prime 1650842_1651548__5prime 0 1650645 1650842 1 833 0.1717171717171717 198 34 "1650842_1651548" +1650842_1651548__3prime 1650842_1651548__3prime 0 1651549 1651746 1 610 0.10606060606060606 198 21 "1650842_1651548" +BW25113_1585 ynfC 0 1651004 1651714 -1 2746 0.13361462728551335 711 95 "UPF0257 family lipoprotein" +BW25113_1585__5prime ynfC__5prime 0 1651715 1651912 -1 918 0.15656565656565657 198 31 "UPF0257 family lipoprotein" +BW25113_1585__3prime ynfC__3prime 0 1650806 1651003 -1 917 0.19696969696969696 198 39 "UPF0257 family lipoprotein" +BW25113_1586 ynfD 0 1651822 1652127 1 1604 0.20588235294117646 306 63 "DUF1161 family periplasmic protein" +BW25113_1586__5prime ynfD__5prime 0 1651624 1651821 1 700 0.1111111111111111 198 22 "DUF1161 family periplasmic protein" +BW25113_1586__3prime ynfD__3prime 0 1652128 1652325 1 350 0.07575757575757576 198 15 "DUF1161 family periplasmic protein" +1652144_1652165 1652144_1652165 0 1652145 1652165 1 0 0.0 21 0 "1652144_1652165" +1652144_1652165__5prime 1652144_1652165__5prime 0 1651947 1652144 1 923 0.19696969696969696 198 39 "1652144_1652165" +1652144_1652165__3prime 1652144_1652165__3prime 0 1652166 1652363 1 335 0.07575757575757576 198 15 "1652144_1652165" +BW25113_1587 ynfE 0 1652326 1654752 1 2807 0.06262875978574371 2427 152 "putative selenate reductase and periplasmic" +BW25113_1587__5prime ynfE__5prime 0 1652128 1652325 1 350 0.07575757575757576 198 15 "putative selenate reductase and periplasmic" +BW25113_1587__3prime ynfE__3prime 0 1654753 1654950 1 169 0.0707070707070707 198 14 "putative selenate reductase and periplasmic" +BW25113_1588 ynfF 0 1654813 1657236 1 2641 0.06724422442244224 2424 163 "S-and N-oxide reductase and A subunit and periplasmic" +BW25113_1588__5prime ynfF__5prime 0 1654615 1654812 1 229 0.030303030303030304 198 6 "S-and N-oxide reductase and A subunit and periplasmic" +BW25113_1588__3prime ynfF__3prime 0 1657237 1657434 1 122 0.050505050505050504 198 10 "S-and N-oxide reductase and A subunit and periplasmic" +BW25113_1589 ynfG 0 1657247 1657864 1 569 0.05501618122977346 618 34 "oxidoreductase and Fe-S subunit" +BW25113_1589__5prime ynfG__5prime 0 1657049 1657246 1 219 0.09090909090909091 198 18 "oxidoreductase and Fe-S subunit" +BW25113_1589__3prime ynfG__3prime 0 1657865 1658062 1 0 0.0 198 0 "oxidoreductase and Fe-S subunit" +BW25113_1590 ynfH 0 1657866 1658720 1 1042 0.05380116959064327 855 46 "oxidoreductase and membrane subunit" +BW25113_1590__5prime ynfH__5prime 0 1657668 1657865 1 93 0.030303030303030304 198 6 "oxidoreductase and membrane subunit" +BW25113_1590__3prime ynfH__3prime 0 1658721 1658918 1 80 0.020202020202020204 198 4 "oxidoreductase and membrane subunit" +BW25113_1591 dmsD 0 1658763 1659377 1 446 0.04390243902439024 615 27 "twin-argninine leader-binding protein for DmsA and TorA" +BW25113_1591__5prime dmsD__5prime 0 1658565 1658762 1 143 0.050505050505050504 198 10 "twin-argninine leader-binding protein for DmsA and TorA" +BW25113_1591__3prime dmsD__3prime 0 1659378 1659575 1 290 0.06060606060606061 198 12 "twin-argninine leader-binding protein for DmsA and TorA" +1659392_1659423 1659392_1659423 0 1659393 1659423 1 21 0.0967741935483871 31 3 "1659392_1659423" +1659392_1659423__5prime 1659392_1659423__5prime 0 1659195 1659392 1 76 0.045454545454545456 198 9 "1659392_1659423" +1659392_1659423__3prime 1659392_1659423__3prime 0 1659424 1659621 1 346 0.06060606060606061 198 12 "1659392_1659423" +BW25113_1592 clcB 0 1659572 1660828 1 2364 0.07478122513922036 1257 94 "H(+)/Cl(-) exchange transporter" +BW25113_1592__5prime clcB__5prime 0 1659374 1659571 1 79 0.04040404040404041 198 8 "H(+)/Cl(-) exchange transporter" +BW25113_1592__3prime clcB__3prime 0 1660829 1661026 1 417 0.03535353535353535 198 7 "H(+)/Cl(-) exchange transporter" +BW25113_1593 ynfK 0 1660781 1661476 -1 1121 0.0603448275862069 696 42 "putative dethiobiotin synthetase" +BW25113_1593__5prime ynfK__5prime 0 1661477 1661674 -1 481 0.09090909090909091 198 18 "putative dethiobiotin synthetase" +BW25113_1593__3prime ynfK__3prime 0 1660583 1660780 -1 158 0.030303030303030304 198 6 "putative dethiobiotin synthetase" +BW25113_1594 mlc 0 1661601 1662821 -1 1811 0.06797706797706797 1221 83 "glucosamine anaerobic growth regulon transcriptional repressor; autorepressor" +BW25113_1594__5prime mlc__5prime 0 1662822 1663019 -1 91 0.045454545454545456 198 9 "glucosamine anaerobic growth regulon transcriptional repressor; autorepressor" +BW25113_1594__3prime mlc__3prime 0 1661403 1661600 -1 295 0.08585858585858586 198 17 "glucosamine anaerobic growth regulon transcriptional repressor; autorepressor" +BW25113_1595 ynfL 0 1662956 1663849 -1 959 0.04138702460850112 894 37 "LysR family putative transcriptional regulator" +BW25113_1595__5prime ynfL__5prime 0 1663850 1664047 -1 99 0.010101010101010102 198 2 "LysR family putative transcriptional regulator" +BW25113_1595__3prime ynfL__3prime 0 1662758 1662955 -1 160 0.06565656565656566 198 13 "LysR family putative transcriptional regulator" +BW25113_1596 ynfM 0 1663956 1665209 1 2032 0.06299840510366826 1254 79 "putative arabinose efflux transporter" +BW25113_1596__5prime ynfM__5prime 0 1663758 1663955 1 62 0.005050505050505051 198 1 "putative arabinose efflux transporter" +BW25113_1596__3prime ynfM__3prime 0 1665210 1665407 1 589 0.13131313131313133 198 26 "putative arabinose efflux transporter" +BW25113_1597 asr 0 1665633 1665941 1 672 0.12297734627831715 309 38 "acid shock-inducible periplasmic protein" +BW25113_1597__5prime asr__5prime 0 1665435 1665632 1 336 0.1111111111111111 198 22 "acid shock-inducible periplasmic protein" +BW25113_1597__3prime asr__3prime 0 1665942 1666139 1 313 0.07575757575757576 198 15 "acid shock-inducible periplasmic protein" +BW25113_4601 ydgU 0 1666034 1666117 1 127 0.05952380952380952 84 5 "stationary phase-induced protein" +BW25113_4601__5prime ydgU__5prime 0 1665836 1666033 1 274 0.07575757575757576 198 15 "stationary phase-induced protein" +BW25113_4601__3prime ydgU__3prime 0 1666118 1666315 1 208 0.050505050505050504 198 10 "stationary phase-induced protein" +BW25113_1598 ydgD 0 1666217 1667038 1 785 0.051094890510948905 822 42 "putative peptidase" +BW25113_1598__5prime ydgD__5prime 0 1666019 1666216 1 304 0.06060606060606061 198 12 "putative peptidase" +BW25113_1598__3prime ydgD__3prime 0 1667039 1667236 1 276 0.09090909090909091 198 18 "putative peptidase" +BW25113_1599 mdtI 0 1667077 1667406 -1 1172 0.11515151515151516 330 38 "multidrug efflux system transporter" +BW25113_1599__5prime mdtI__5prime 0 1667407 1667604 -1 1813 0.2676767676767677 198 53 "multidrug efflux system transporter" +BW25113_1599__3prime mdtI__3prime 0 1666879 1667076 -1 88 0.015151515151515152 198 3 "multidrug efflux system transporter" +BW25113_1600 mdtJ 0 1667393 1667758 -1 2634 0.1994535519125683 366 73 "multidrug efflux system transporter" +BW25113_1600__5prime mdtJ__5prime 0 1667759 1667956 -1 1608 0.24242424242424243 198 48 "multidrug efflux system transporter" +BW25113_1600__3prime mdtJ__3prime 0 1667195 1667392 -1 576 0.09595959595959595 198 19 "multidrug efflux system transporter" +BW25113_1601 tqsA 0 1668170 1669204 1 2587 0.08888888888888889 1035 92 "pheromone AI-2 transporter" +BW25113_1601__5prime tqsA__5prime 0 1667972 1668169 1 309 0.10606060606060606 198 21 "pheromone AI-2 transporter" +BW25113_1601__3prime tqsA__3prime 0 1669205 1669402 1 100 0.020202020202020204 198 4 "pheromone AI-2 transporter" +BW25113_1602 pntB 0 1669229 1670617 -1 1255 0.03959683225341973 1389 55 "pyridine nucleotide transhydrogenase and beta subunit" +BW25113_1602__5prime pntB__5prime 0 1670618 1670815 -1 145 0.030303030303030304 198 6 "pyridine nucleotide transhydrogenase and beta subunit" +BW25113_1602__3prime pntB__3prime 0 1669031 1669228 -1 129 0.025252525252525252 198 5 "pyridine nucleotide transhydrogenase and beta subunit" +BW25113_1603 pntA 0 1670628 1672160 -1 1747 0.04370515329419439 1533 67 "pyridine nucleotide transhydrogenase and alpha subunit" +BW25113_1603__5prime pntA__5prime 0 1672161 1672358 -1 239 0.04040404040404041 198 8 "pyridine nucleotide transhydrogenase and alpha subunit" +BW25113_1603__3prime pntA__3prime 0 1670430 1670627 -1 75 0.025252525252525252 198 5 "pyridine nucleotide transhydrogenase and alpha subunit" +BW25113_1604 ydgH 0 1672684 1673628 1 1437 0.07936507936507936 945 75 "DUF1471 family periplasmic protein" +BW25113_1604__5prime ydgH__5prime 0 1672486 1672683 1 312 0.05555555555555555 198 11 "DUF1471 family periplasmic protein" +BW25113_1604__3prime ydgH__3prime 0 1673629 1673826 1 15 0.010101010101010102 198 2 "DUF1471 family periplasmic protein" +BW25113_1605 ydgI 0 1673814 1675196 1 1699 0.05278380332610268 1383 73 "putative arginine/ornithine antiporter transporter" +BW25113_1605__5prime ydgI__5prime 0 1673616 1673813 1 85 0.020202020202020204 198 4 "putative arginine/ornithine antiporter transporter" +BW25113_1605__3prime ydgI__3prime 0 1675197 1675394 1 150 0.0707070707070707 198 14 "putative arginine/ornithine antiporter transporter" +BW25113_1606 folM 0 1675233 1675955 1 748 0.0677731673582296 723 49 "dihydromonapterin reductase and NADPH-dependent; dihydrofolate reductase isozyme" +BW25113_1606__5prime folM__5prime 0 1675035 1675232 1 265 0.07575757575757576 198 15 "dihydromonapterin reductase and NADPH-dependent; dihydrofolate reductase isozyme" +BW25113_1606__3prime folM__3prime 0 1675956 1676153 1 243 0.1111111111111111 198 22 "dihydromonapterin reductase and NADPH-dependent; dihydrofolate reductase isozyme" +BW25113_1607 ydgC 0 1675952 1676287 -1 320 0.07738095238095238 336 26 "GlpM family inner membrane protein" +BW25113_1607__5prime ydgC__5prime 0 1676288 1676485 -1 256 0.050505050505050504 198 10 "GlpM family inner membrane protein" +BW25113_1607__3prime ydgC__3prime 0 1675754 1675951 -1 160 0.06060606060606061 198 12 "GlpM family inner membrane protein" +BW25113_1608 rstA 0 1676416 1677135 1 757 0.05 720 36 "response regulator of RstAB two-component system and low Mg-responsive via PhoQP" +BW25113_1608__5prime rstA__5prime 0 1676218 1676415 1 263 0.05555555555555555 198 11 "response regulator of RstAB two-component system and low Mg-responsive via PhoQP" +BW25113_1608__3prime rstA__3prime 0 1677136 1677333 1 269 0.020202020202020204 198 4 "response regulator of RstAB two-component system and low Mg-responsive via PhoQP" +BW25113_1609 rstB 0 1677139 1678440 1 1506 0.04992319508448541 1302 65 "sensory histidine kinase of RstAB two-component system and low Mg-responsive via PhoQP" +BW25113_1609__5prime rstB__5prime 0 1676941 1677138 1 175 0.05555555555555555 198 11 "sensory histidine kinase of RstAB two-component system and low Mg-responsive via PhoQP" +BW25113_1609__3prime rstB__3prime 0 1678441 1678638 1 369 0.07575757575757576 198 15 "sensory histidine kinase of RstAB two-component system and low Mg-responsive via PhoQP" +BW25113_1610 tus 0 1678516 1679445 1 1506 0.07526881720430108 930 70 "inhibitor of replication at Ter and DNA-binding protein" +BW25113_1610__5prime tus__5prime 0 1678318 1678515 1 746 0.13131313131313133 198 26 "inhibitor of replication at Ter and DNA-binding protein" +BW25113_1610__3prime tus__3prime 0 1679446 1679643 1 353 0.06060606060606061 198 12 "inhibitor of replication at Ter and DNA-binding protein" +BW25113_1611 fumC 0 1679442 1680845 -1 1832 0.06481481481481481 1404 91 "fumarate hydratase (fumarase C) and aerobic Class II" +BW25113_1611__5prime fumC__5prime 0 1680846 1681043 -1 82 0.025252525252525252 198 5 "fumarate hydratase (fumarase C) and aerobic Class II" +BW25113_1611__3prime fumC__3prime 0 1679244 1679441 -1 403 0.10606060606060606 198 21 "fumarate hydratase (fumarase C) and aerobic Class II" +BW25113_1612 fumA 0 1680988 1682634 -1 1684 0.0461445051608986 1647 76 "fumarate hydratase (fumarase A) and aerobic Class I" +BW25113_1612__5prime fumA__5prime 0 1682635 1682832 -1 144 0.03535353535353535 198 7 "fumarate hydratase (fumarase A) and aerobic Class I" +BW25113_1612__3prime fumA__3prime 0 1680790 1680987 -1 132 0.045454545454545456 198 9 "fumarate hydratase (fumarase A) and aerobic Class I" +BW25113_1613 manA 0 1682833 1684008 1 1174 0.05612244897959184 1176 66 "mannose-6-phosphate isomerase" +BW25113_1613__5prime manA__5prime 0 1682635 1682832 1 144 0.03535353535353535 198 7 "mannose-6-phosphate isomerase" +BW25113_1613__3prime manA__3prime 0 1684009 1684206 1 175 0.050505050505050504 198 10 "mannose-6-phosphate isomerase" +BW25113_1614 ydgA 0 1684109 1685617 1 1351 0.039761431411530816 1509 60 "DUF945 family protein" +BW25113_1614__5prime ydgA__5prime 0 1683911 1684108 1 32 0.015151515151515152 198 3 "DUF945 family protein" +BW25113_1614__3prime ydgA__3prime 0 1685618 1685815 1 6 0.005050505050505051 198 1 "DUF945 family protein" +1685681_1685778 1685681_1685778 0 1685682 1685778 1 6 0.010309278350515464 97 1 "1685681_1685778" +1685681_1685778__5prime 1685681_1685778__5prime 0 1685484 1685681 1 0 0.0 198 0 "1685681_1685778" +1685681_1685778__3prime 1685681_1685778__3prime 0 1685779 1685976 1 99 0.025252525252525252 198 5 "1685681_1685778" +BW25113_1615 uidC 0 1685843 1687108 -1 5485 0.17614533965244866 1266 223 "putative outer membrane porin for beta-glucuronides porin protein" +BW25113_1615__5prime uidC__5prime 0 1687109 1687306 -1 748 0.10606060606060606 198 21 "putative outer membrane porin for beta-glucuronides porin protein" +BW25113_1615__3prime uidC__3prime 0 1685645 1685842 -1 6 0.005050505050505051 198 1 "putative outer membrane porin for beta-glucuronides porin protein" +BW25113_1616 uidB 0 1687147 1688520 -1 3598 0.11426491994177583 1374 157 "glucuronide transporter" +BW25113_1616__5prime uidB__5prime 0 1688521 1688718 -1 30 0.010101010101010102 198 2 "glucuronide transporter" +BW25113_1616__3prime uidB__3prime 0 1686949 1687146 -1 1844 0.2878787878787879 198 57 "glucuronide transporter" +BW25113_1617 uidA 0 1688517 1690328 -1 2151 0.052980132450331126 1812 96 "beta-D-glucuronidase" +BW25113_1617__5prime uidA__5prime 0 1690329 1690526 -1 219 0.025252525252525252 198 5 "beta-D-glucuronidase" +BW25113_1617__3prime uidA__3prime 0 1688319 1688516 -1 417 0.0707070707070707 198 14 "beta-D-glucuronidase" +BW25113_1618 uidR 0 1690719 1691309 -1 931 0.06937394247038917 591 41 "transcriptional repressor" +BW25113_1618__5prime uidR__5prime 0 1691310 1691507 -1 86 0.03535353535353535 198 7 "transcriptional repressor" +BW25113_1618__3prime uidR__3prime 0 1690521 1690718 -1 88 0.025252525252525252 198 5 "transcriptional repressor" +BW25113_1619 hdhA 0 1691530 1692297 -1 3519 0.15234375 768 117 "7-alpha-hydroxysteroid dehydrogenase and NAD-dependent" +BW25113_1619__5prime hdhA__5prime 0 1692298 1692495 -1 1123 0.1919191919191919 198 38 "7-alpha-hydroxysteroid dehydrogenase and NAD-dependent" +BW25113_1619__3prime hdhA__3prime 0 1691332 1691529 -1 113 0.025252525252525252 198 5 "7-alpha-hydroxysteroid dehydrogenase and NAD-dependent" +BW25113_1620 malI 0 1692409 1693437 -1 1544 0.04956268221574344 1029 51 "transcriptional repressor of Mal regulon" +BW25113_1620__5prime malI__5prime 0 1693438 1693635 -1 129 0.025252525252525252 198 5 "transcriptional repressor of Mal regulon" +BW25113_1620__3prime malI__3prime 0 1692211 1692408 -1 1106 0.20707070707070707 198 41 "transcriptional repressor of Mal regulon" +BW25113_1621 malX 0 1693612 1695204 1 1430 0.054613935969868174 1593 87 "fused maltose and glucose-specific PTS enzymes: IIB component and IIC component" +BW25113_1621__5prime malX__5prime 0 1693414 1693611 1 129 0.025252525252525252 198 5 "fused maltose and glucose-specific PTS enzymes: IIB component and IIC component" +BW25113_1621__3prime malX__3prime 0 1695205 1695402 1 448 0.09090909090909091 198 18 "fused maltose and glucose-specific PTS enzymes: IIB component and IIC component" +BW25113_1622 malY 0 1695214 1696386 1 1607 0.0639386189258312 1173 75 "bifunctional beta-cystathionase and PLP-dependent/ regulator of maltose regulon" +BW25113_1622__5prime malY__5prime 0 1695016 1695213 1 176 0.03535353535353535 198 7 "bifunctional beta-cystathionase and PLP-dependent/ regulator of maltose regulon" +BW25113_1622__3prime malY__3prime 0 1696387 1696584 1 257 0.050505050505050504 198 10 "bifunctional beta-cystathionase and PLP-dependent/ regulator of maltose regulon" +BW25113_1623 add 0 1696490 1697491 1 1203 0.06487025948103792 1002 65 "adenosine deaminase" +BW25113_1623__5prime add__5prime 0 1696292 1696489 1 236 0.05555555555555555 198 11 "adenosine deaminase" +BW25113_1623__3prime add__3prime 0 1697492 1697689 1 169 0.050505050505050504 198 10 "adenosine deaminase" +BW25113_1624 ydgJ 0 1697525 1698565 -1 1687 0.08069164265129683 1041 84 "putative oxidoreductase" +BW25113_1624__5prime ydgJ__5prime 0 1698566 1698763 -1 559 0.15151515151515152 198 30 "putative oxidoreductase" +BW25113_1624__3prime ydgJ__3prime 0 1697327 1697524 -1 375 0.10101010101010101 198 20 "putative oxidoreductase" +BW25113_4409 blr 0 1698808 1698933 1 1663 0.38095238095238093 126 48 "beta-lactam resistance membrane protein; divisome-associated protein" +BW25113_4409__5prime blr__5prime 0 1698610 1698807 1 744 0.16666666666666666 198 33 "beta-lactam resistance membrane protein; divisome-associated protein" +BW25113_4409__3prime blr__3prime 0 1698934 1699131 1 1285 0.29292929292929293 198 58 "beta-lactam resistance membrane protein; divisome-associated protein" +BW25113_1625 cnu 0 1699206 1699421 1 1391 0.2361111111111111 216 51 "nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor" +BW25113_1625__5prime cnu__5prime 0 1699008 1699205 1 683 0.16666666666666666 198 33 "nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor" +BW25113_1625__3prime cnu__3prime 0 1699422 1699619 1 1462 0.2828282828282828 198 56 "nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor" +BW25113_1626 ydgK 0 1699507 1699947 1 2495 0.2494331065759637 441 110 "DUF2569 family inner membrane protein" +BW25113_1626__5prime ydgK__5prime 0 1699309 1699506 1 1080 0.20202020202020202 198 40 "DUF2569 family inner membrane protein" +BW25113_1626__3prime ydgK__3prime 0 1699948 1700145 1 554 0.13131313131313133 198 26 "DUF2569 family inner membrane protein" +BW25113_1627 rsxA 0 1700024 1700605 1 827 0.06529209621993128 582 38 "SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex" +BW25113_1627__5prime rsxA__5prime 0 1699826 1700023 1 410 0.16161616161616163 198 32 "SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex" +BW25113_1627__3prime rsxA__3prime 0 1700606 1700803 1 287 0.11616161616161616 198 23 "SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex" +BW25113_1628 rsxB 0 1700605 1701183 1 525 0.07081174438687392 579 41 "SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein" +BW25113_1628__5prime rsxB__5prime 0 1700407 1700604 1 101 0.025252525252525252 198 5 "SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein" +BW25113_1628__3prime rsxB__3prime 0 1701184 1701381 1 284 0.05555555555555555 198 11 "SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein" +BW25113_1629 rsxC 0 1701176 1703398 1 2665 0.05623031938821413 2223 125 "SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex" +BW25113_1629__5prime rsxC__5prime 0 1700978 1701175 1 224 0.08080808080808081 198 16 "SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex" +BW25113_1629__3prime rsxC__3prime 0 1703399 1703596 1 500 0.11616161616161616 198 23 "SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex" +BW25113_1630 rsxD 0 1703399 1704457 1 1306 0.07176581680830972 1059 76 "SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" +BW25113_1630__5prime rsxD__5prime 0 1703201 1703398 1 434 0.09090909090909091 198 18 "SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" +BW25113_1630__3prime rsxD__3prime 0 1704458 1704655 1 405 0.10606060606060606 198 21 "SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" +BW25113_1631 rsxG 0 1704461 1705081 1 676 0.05314009661835749 621 33 "SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" +BW25113_1631__5prime rsxG__5prime 0 1704263 1704460 1 148 0.0707070707070707 198 14 "SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" +BW25113_1631__3prime rsxG__3prime 0 1705082 1705279 1 156 0.06565656565656566 198 13 "SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" +BW25113_1632 rsxE 0 1705085 1705780 1 970 0.05028735632183908 696 35 "SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase" +BW25113_1632__5prime rsxE__5prime 0 1704887 1705084 1 60 0.030303030303030304 198 6 "SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase" +BW25113_1632__3prime rsxE__3prime 0 1705781 1705978 1 256 0.06565656565656566 198 13 "SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase" +BW25113_1633 nth 0 1705780 1706415 1 592 0.06446540880503145 636 41 "DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)" +BW25113_1633__5prime nth__5prime 0 1705582 1705779 1 390 0.030303030303030304 198 6 "DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)" +BW25113_1633__3prime nth__3prime 0 1706416 1706613 1 112 0.03535353535353535 198 7 "DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)" +BW25113_1634 dtpA 0 1707026 1708528 1 2602 0.07651363938789088 1503 115 "dipeptide and tripeptide permease A" +BW25113_1634__5prime dtpA__5prime 0 1706828 1707025 1 105 0.04040404040404041 198 8 "dipeptide and tripeptide permease A" +BW25113_1634__3prime dtpA__3prime 0 1708529 1708726 1 181 0.04040404040404041 198 8 "dipeptide and tripeptide permease A" +BW25113_1635 gstA 0 1708634 1709239 1 1269 0.08250825082508251 606 50 "glutathionine S-transferase" +BW25113_1635__5prime gstA__5prime 0 1708436 1708633 1 157 0.04040404040404041 198 8 "glutathionine S-transferase" +BW25113_1635__3prime gstA__3prime 0 1709240 1709437 1 149 0.030303030303030304 198 6 "glutathionine S-transferase" +BW25113_1636 pdxY 0 1709283 1710146 -1 684 0.04398148148148148 864 38 "pyridoxamine kinase" +BW25113_1636__5prime pdxY__5prime 0 1710147 1710344 -1 0 0.0 198 0 "pyridoxamine kinase" +BW25113_1636__3prime pdxY__3prime 0 1709085 1709282 -1 1044 0.16161616161616163 198 32 "pyridoxamine kinase" +BW25113_1637 tyrS 0 1710205 1711479 -1 0 0.0 1275 0 "tyrosyl-tRNA synthetase" +BW25113_1637__5prime tyrS__5prime 0 1711480 1711677 -1 93 0.015151515151515152 198 3 "tyrosyl-tRNA synthetase" +BW25113_1637__3prime tyrS__3prime 0 1710007 1710204 -1 170 0.045454545454545456 198 9 "tyrosyl-tRNA synthetase" +BW25113_1638 pdxH 0 1711608 1712264 -1 67 0.0060882800608828 657 4 '"pyridoxine 5''-phosphate oxidase"' +BW25113_1638__5prime pdxH__5prime 0 1712265 1712462 -1 166 0.06565656565656566 198 13 '"pyridoxine 5''-phosphate oxidase"' +BW25113_1638__3prime pdxH__3prime 0 1711410 1711607 -1 55 0.010101010101010102 198 2 '"pyridoxine 5''-phosphate oxidase"' +BW25113_1639 mliC 0 1712323 1712652 -1 199 0.05454545454545454 330 18 "inhibitor of c-type lysozyme and membrane-bound; putative lipoprotein" +BW25113_1639__5prime mliC__5prime 0 1712653 1712850 -1 115 0.020202020202020204 198 4 "inhibitor of c-type lysozyme and membrane-bound; putative lipoprotein" +BW25113_1639__3prime mliC__3prime 0 1712125 1712322 -1 50 0.015151515151515152 198 3 "inhibitor of c-type lysozyme and membrane-bound; putative lipoprotein" +BW25113_1640 anmK 0 1712750 1713859 -1 1667 0.07567567567567568 1110 84 "anhydro-N-acetylmuramic acid kinase" +BW25113_1640__5prime anmK__5prime 0 1713860 1714057 -1 33 0.025252525252525252 198 5 "anhydro-N-acetylmuramic acid kinase" +BW25113_1640__3prime anmK__3prime 0 1712552 1712749 -1 30 0.015151515151515152 198 3 "anhydro-N-acetylmuramic acid kinase" +BW25113_1641 slyB 0 1714133 1714600 1 727 0.1047008547008547 468 49 "outer membrane lipoprotein" +BW25113_1641__5prime slyB__5prime 0 1713935 1714132 1 160 0.04040404040404041 198 8 "outer membrane lipoprotein" +BW25113_1641__3prime slyB__3prime 0 1714601 1714798 1 116 0.04040404040404041 198 8 "outer membrane lipoprotein" +BW25113_1642 slyA 0 1714647 1715081 -1 587 0.06666666666666667 435 29 "global transcriptional regulator" +BW25113_1642__5prime slyA__5prime 0 1715082 1715279 -1 5 0.005050505050505051 198 1 "global transcriptional regulator" +BW25113_1642__3prime slyA__3prime 0 1714449 1714646 -1 102 0.04040404040404041 198 8 "global transcriptional regulator" +BW25113_1643 ydhI 0 1715282 1715518 1 447 0.10970464135021098 237 26 "DUF1656 family putative inner membrane efflux pump associated protein" +BW25113_1643__5prime ydhI__5prime 0 1715084 1715281 1 5 0.005050505050505051 198 1 "DUF1656 family putative inner membrane efflux pump associated protein" +BW25113_1643__3prime ydhI__3prime 0 1715519 1715716 1 258 0.05555555555555555 198 11 "DUF1656 family putative inner membrane efflux pump associated protein" +BW25113_1644 ydhJ 0 1715521 1716378 1 636 0.047785547785547784 858 41 "putative membrane fusion protein (MFP) of YdhJK efflux pump" +BW25113_1644__5prime ydhJ__5prime 0 1715323 1715520 1 368 0.10101010101010101 198 20 "putative membrane fusion protein (MFP) of YdhJK efflux pump" +BW25113_1644__3prime ydhJ__3prime 0 1716379 1716576 1 128 0.015151515151515152 198 3 "putative membrane fusion protein (MFP) of YdhJK efflux pump" +BW25113_1645 ydhK 0 1716378 1718390 1 2420 0.05116741182314953 2013 103 "putative efflux protein (PET) component of YdhJK efflux pump" +BW25113_1645__5prime ydhK__5prime 0 1716180 1716377 1 146 0.050505050505050504 198 10 "putative efflux protein (PET) component of YdhJK efflux pump" +BW25113_1645__3prime ydhK__3prime 0 1718391 1718588 1 121 0.05555555555555555 198 11 "putative efflux protein (PET) component of YdhJK efflux pump" +BW25113_1646 sodC 0 1718391 1718912 -1 491 0.04980842911877394 522 26 "superoxide dismutase and Cu and Zn and periplasmic" +BW25113_1646__5prime sodC__5prime 0 1718913 1719110 -1 262 0.08080808080808081 198 16 "superoxide dismutase and Cu and Zn and periplasmic" +BW25113_1646__3prime sodC__3prime 0 1718193 1718390 -1 207 0.045454545454545456 198 9 "superoxide dismutase and Cu and Zn and periplasmic" +BW25113_1647 ydhF 0 1718993 1719889 -1 973 0.05239687848383501 897 47 "putative oxidoreductase" +BW25113_1647__5prime ydhF__5prime 0 1719890 1720087 -1 143 0.050505050505050504 198 10 "putative oxidoreductase" +BW25113_1647__3prime ydhF__3prime 0 1718795 1718992 -1 370 0.0707070707070707 198 14 "putative oxidoreductase" +BW25113_1648 ydhL 0 1719938 1720177 -1 223 0.04583333333333333 240 11 "DUF1289 family protein" +BW25113_1648__5prime ydhL__5prime 0 1720178 1720375 -1 314 0.045454545454545456 198 9 "DUF1289 family protein" +BW25113_1648__3prime ydhL__3prime 0 1719740 1719937 -1 365 0.09090909090909091 198 18 "DUF1289 family protein" +BW25113_1649 nemR 0 1720280 1720879 1 1015 0.07333333333333333 600 44 "transcriptional repressor for the nemRA-gloA operon and quinone- and glyoxal- and and HOCl-activated" +BW25113_1649__5prime nemR__5prime 0 1720082 1720279 1 475 0.06565656565656566 198 13 "transcriptional repressor for the nemRA-gloA operon and quinone- and glyoxal- and and HOCl-activated" +BW25113_1649__3prime nemR__3prime 0 1720880 1721077 1 377 0.07575757575757576 198 15 "transcriptional repressor for the nemRA-gloA operon and quinone- and glyoxal- and and HOCl-activated" +BW25113_1650 nemA 0 1720916 1722013 1 1349 0.07012750455373407 1098 77 "chromate reductase and quinone reductase and FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme" +BW25113_1650__5prime nemA__5prime 0 1720718 1720915 1 97 0.045454545454545456 198 9 "chromate reductase and quinone reductase and FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme" +BW25113_1650__3prime nemA__3prime 0 1722014 1722211 1 291 0.09595959595959595 198 19 "chromate reductase and quinone reductase and FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme" +BW25113_1651 gloA 0 1722094 1722501 1 458 0.0784313725490196 408 32 "glyoxalase I and Ni-dependent" +BW25113_1651__5prime gloA__5prime 0 1721896 1722093 1 126 0.050505050505050504 198 10 "glyoxalase I and Ni-dependent" +BW25113_1651__3prime gloA__3prime 0 1722502 1722699 1 236 0.05555555555555555 198 11 "glyoxalase I and Ni-dependent" +BW25113_1652 rnt 0 1722604 1723251 1 18 0.0030864197530864196 648 2 "ribonuclease T (RNase T)" +BW25113_1652__5prime rnt__5prime 0 1722406 1722603 1 395 0.09595959595959595 198 19 "ribonuclease T (RNase T)" +BW25113_1652__3prime rnt__3prime 0 1723252 1723449 1 279 0.0707070707070707 198 14 "ribonuclease T (RNase T)" +BW25113_1653 lhr 0 1723344 1727960 1 4815 0.049166125189517004 4617 227 "putative ATP-dependent helicase" +BW25113_1653__5prime lhr__5prime 0 1723146 1723343 1 256 0.06060606060606061 198 12 "putative ATP-dependent helicase" +BW25113_1653__3prime lhr__3prime 0 1727961 1728158 1 170 0.07575757575757576 198 15 "putative ATP-dependent helicase" +1727970_1727994 1727970_1727994 0 1727971 1727994 1 0 0.0 24 0 "1727970_1727994" +1727970_1727994__5prime 1727970_1727994__5prime 0 1727773 1727970 1 465 0.08080808080808081 198 16 "1727970_1727994" +1727970_1727994__3prime 1727970_1727994__3prime 0 1727995 1728192 1 170 0.07575757575757576 198 15 "1727970_1727994" +BW25113_1654 grxD 0 1728011 1728358 -1 180 0.040229885057471264 348 14 "glutaredoxin-4" +BW25113_1654__5prime grxD__5prime 0 1728359 1728556 -1 47 0.020202020202020204 198 4 "glutaredoxin-4" +BW25113_1654__3prime grxD__3prime 0 1727813 1728010 -1 498 0.09090909090909091 198 18 "glutaredoxin-4" +BW25113_1655 mepH 0 1728692 1729507 1 926 0.049019607843137254 816 40 "murein DD-endopeptidase and space-maker hydrolase" +BW25113_1655__5prime mepH__5prime 0 1728494 1728691 1 85 0.030303030303030304 198 6 "murein DD-endopeptidase and space-maker hydrolase" +BW25113_1655__3prime mepH__3prime 0 1729508 1729705 1 247 0.06060606060606061 198 12 "murein DD-endopeptidase and space-maker hydrolase" +BW25113_1656 sodB 0 1729635 1730216 1 909 0.07388316151202749 582 43 "superoxide dismutase and Fe" +BW25113_1656__5prime sodB__5prime 0 1729437 1729634 1 142 0.050505050505050504 198 10 "superoxide dismutase and Fe" +BW25113_1656__3prime sodB__3prime 0 1730217 1730414 1 343 0.045454545454545456 198 9 "superoxide dismutase and Fe" +1730239_1730313 1730239_1730313 0 1730240 1730313 1 229 0.08108108108108109 74 6 "1730239_1730313" +1730239_1730313__5prime 1730239_1730313__5prime 0 1730042 1730239 1 216 0.06060606060606061 198 12 "1730239_1730313" +1730239_1730313__3prime 1730239_1730313__3prime 0 1730314 1730511 1 220 0.025252525252525252 198 5 "1730239_1730313" +BW25113_1657 ydhP 0 1730378 1731547 -1 1349 0.062393162393162394 1170 73 "putative transporter" +BW25113_1657__5prime ydhP__5prime 0 1731548 1731745 -1 312 0.050505050505050504 198 10 "putative transporter" +BW25113_1657__3prime ydhP__3prime 0 1730180 1730377 -1 343 0.045454545454545456 198 9 "putative transporter" +BW25113_4602 ynhF 0 1731713 1731802 -1 108 0.06666666666666667 90 6 "stress response membrane" +BW25113_4602__5prime ynhF__5prime 0 1731803 1732000 -1 162 0.030303030303030304 198 6 "stress response membrane" +BW25113_4602__3prime ynhF__3prime 0 1731515 1731712 -1 307 0.045454545454545456 198 9 "stress response membrane" +BW25113_1658 purR 0 1732101 1733126 1 922 0.06237816764132553 1026 64 "transcriptional repressor and hypoxanthine-binding" +BW25113_1658__5prime purR__5prime 0 1731903 1732100 1 417 0.0707070707070707 198 14 "transcriptional repressor and hypoxanthine-binding" +BW25113_1658__3prime purR__3prime 0 1733127 1733324 1 237 0.0707070707070707 198 14 "transcriptional repressor and hypoxanthine-binding" +BW25113_1659 ydhB 0 1733123 1734055 -1 772 0.04501607717041801 933 42 "LysR family putative transcriptional regulator" +BW25113_1659__5prime ydhB__5prime 0 1734056 1734253 -1 86 0.045454545454545456 198 9 "LysR family putative transcriptional regulator" +BW25113_1659__3prime ydhB__3prime 0 1732925 1733122 -1 150 0.0707070707070707 198 14 "LysR family putative transcriptional regulator" +BW25113_1660 ydhC 0 1734168 1735379 1 1444 0.06023102310231023 1212 73 "putative arabinose efflux transporter" +BW25113_1660__5prime ydhC__5prime 0 1733970 1734167 1 18 0.015151515151515152 198 3 "putative arabinose efflux transporter" +BW25113_1660__3prime ydhC__3prime 0 1735380 1735577 1 150 0.020202020202020204 198 4 "putative arabinose efflux transporter" +BW25113_1661 cfa 0 1735670 1736818 1 1774 0.08093994778067885 1149 93 "cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)" +BW25113_1661__5prime cfa__5prime 0 1735472 1735669 1 233 0.04040404040404041 198 8 "cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)" +BW25113_1661__3prime cfa__3prime 0 1736819 1737016 1 422 0.05555555555555555 198 11 "cyclopropane fatty acyl phospholipid synthase (unsaturated-phospholipid methyltransferase)" +BW25113_1662 ribC 0 1736858 1737499 -1 154 0.004672897196261682 642 3 "riboflavin synthase and alpha subunit" +BW25113_1662__5prime ribC__5prime 0 1737500 1737697 -1 174 0.05555555555555555 198 11 "riboflavin synthase and alpha subunit" +BW25113_1662__3prime ribC__3prime 0 1736660 1736857 -1 582 0.11616161616161616 198 23 "riboflavin synthase and alpha subunit" +BW25113_1663 mdtK 0 1737714 1739087 1 1983 0.06841339155749636 1374 94 "multidrug efflux system transporter" +BW25113_1663__5prime mdtK__5prime 0 1737516 1737713 1 174 0.05555555555555555 198 11 "multidrug efflux system transporter" +BW25113_1663__3prime mdtK__3prime 0 1739088 1739285 1 66 0.020202020202020204 198 4 "multidrug efflux system transporter" +BW25113_1664 ydhQ 0 1739128 1740384 -1 1377 0.060461416070007955 1257 76 "autotransporter adhesin-related protein" +BW25113_1664__5prime ydhQ__5prime 0 1740385 1740582 -1 371 0.08080808080808081 198 16 "autotransporter adhesin-related protein" +BW25113_1664__3prime ydhQ__3prime 0 1738930 1739127 -1 194 0.050505050505050504 198 10 "autotransporter adhesin-related protein" +BW25113_1665 valV 0 1740692 1740768 1 39 0.06493506493506493 77 5 "tRNA-Val" +BW25113_1665__5prime valV__5prime 0 1740494 1740691 1 305 0.05555555555555555 198 11 "tRNA-Val" +BW25113_1665__3prime valV__3prime 0 1740769 1740966 1 269 0.0707070707070707 198 14 "tRNA-Val" +BW25113_1666 valW 0 1740773 1740849 1 140 0.1038961038961039 77 8 "tRNA-Val" +BW25113_1666__5prime valW__5prime 0 1740575 1740772 1 70 0.04040404040404041 198 8 "tRNA-Val" +BW25113_1666__3prime valW__3prime 0 1740850 1741047 1 158 0.04040404040404041 198 8 "tRNA-Val" +BW25113_1667 ydhR 0 1740957 1741262 1 89 0.026143790849673203 306 8 "putative monooxygenase" +BW25113_1667__5prime ydhR__5prime 0 1740759 1740956 1 269 0.0707070707070707 198 14 "putative monooxygenase" +BW25113_1667__3prime ydhR__3prime 0 1741263 1741460 1 151 0.050505050505050504 198 10 "putative monooxygenase" +BW25113_1668 ydhS 0 1741388 1742992 1 1959 0.05545171339563863 1605 89 "putative oxidoreductase" +BW25113_1668__5prime ydhS__5prime 0 1741190 1741387 1 86 0.015151515151515152 198 3 "putative oxidoreductase" +BW25113_1668__3prime ydhS__3prime 0 1742993 1743190 1 343 0.06060606060606061 198 12 "putative oxidoreductase" +BW25113_1669 ydhT 0 1743004 1743816 -1 978 0.06642066420664207 813 54 "FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1669__5prime ydhT__5prime 0 1743817 1744014 -1 156 0.04040404040404041 198 8 "FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1669__3prime ydhT__3prime 0 1742806 1743003 -1 233 0.0707070707070707 198 14 "FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1670 ydhU 0 1743820 1744605 -1 424 0.031806615776081425 786 25 "putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1670__5prime ydhU__5prime 0 1744606 1744803 -1 5 0.005050505050505051 198 1 "putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1670__3prime ydhU__3prime 0 1743622 1743819 -1 210 0.06565656565656566 198 13 "putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1671 ydhX 0 1744602 1745270 -1 149 0.02242152466367713 669 15 "putative 4Fe-4S ferridoxin-type protein; FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1671__5prime ydhX__5prime 0 1745271 1745468 -1 235 0.06565656565656566 198 13 "putative 4Fe-4S ferridoxin-type protein; FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1671__3prime ydhX__3prime 0 1744404 1744601 -1 146 0.020202020202020204 198 4 "putative 4Fe-4S ferridoxin-type protein; FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1672 ydhW 0 1745334 1745981 -1 791 0.07561728395061729 648 49 "FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1672__5prime ydhW__5prime 0 1745982 1746179 -1 69 0.030303030303030304 198 6 "FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1672__3prime ydhW__3prime 0 1745136 1745333 -1 13 0.010101010101010102 198 2 "FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1673 ydhV 0 1745985 1748087 -1 3717 0.09747979077508322 2103 205 "putative oxidoreductase subunit" +BW25113_1673__5prime ydhV__5prime 0 1748088 1748285 -1 1746 0.31313131313131315 198 62 "putative oxidoreductase subunit" +BW25113_1673__3prime ydhV__3prime 0 1745787 1745984 -1 123 0.050505050505050504 198 10 "putative oxidoreductase subunit" +BW25113_1674 ydhY 0 1748108 1748734 -1 4942 0.26953748006379585 627 169 "putative 4Fe-4S ferridoxin-type protein; FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1674__5prime ydhY__5prime 0 1748735 1748932 -1 745 0.2474747474747475 198 49 "putative 4Fe-4S ferridoxin-type protein; FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1674__3prime ydhY__3prime 0 1747910 1748107 -1 322 0.13131313131313133 198 26 "putative 4Fe-4S ferridoxin-type protein; FNR and Nar and NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" +BW25113_1675 ydhZ 0 1749189 1749398 -1 953 0.19047619047619047 210 40 "uncharacterized protein" +BW25113_1675__5prime ydhZ__5prime 0 1749399 1749596 -1 278 0.05555555555555555 198 11 "uncharacterized protein" +BW25113_1675__3prime ydhZ__3prime 0 1748991 1749188 -1 204 0.05555555555555555 198 11 "uncharacterized protein" +BW25113_1676 pykF 0 1749955 1751367 1 1041 0.03821656050955414 1413 54 "pyruvate kinase I" +BW25113_1676__5prime pykF__5prime 0 1749757 1749954 1 836 0.15656565656565657 198 31 "pyruvate kinase I" +BW25113_1676__3prime pykF__3prime 0 1751368 1751565 1 0 0.0 198 0 "pyruvate kinase I" +BW25113_1677 lpp 0 1751678 1751914 1 256 0.046413502109704644 237 11 "murein lipoprotein" +BW25113_1677__5prime lpp__5prime 0 1751480 1751677 1 0 0.0 198 0 "murein lipoprotein" +BW25113_1677__3prime lpp__3prime 0 1751915 1752112 1 38 0.030303030303030304 198 6 "murein lipoprotein" +BW25113_1678 ldtE 0 1751978 1752982 -1 1877 0.06965174129353234 1005 70 "murein L and D-transpeptidase" +BW25113_1678__5prime ldtE__5prime 0 1752983 1753180 -1 128 0.05555555555555555 198 11 "murein L and D-transpeptidase" +BW25113_1678__3prime ldtE__3prime 0 1751780 1751977 -1 126 0.015151515151515152 198 3 "murein L and D-transpeptidase" +BW25113_1679 sufE 0 1753131 1753547 -1 888 0.10071942446043165 417 42 "sulfur acceptor protein" +BW25113_1679__5prime sufE__5prime 0 1753548 1753745 -1 458 0.10606060606060606 198 21 "sulfur acceptor protein" +BW25113_1679__3prime sufE__3prime 0 1752933 1753130 -1 226 0.050505050505050504 198 10 "sulfur acceptor protein" +BW25113_1680 sufS 0 1753560 1754780 -1 1890 0.06961506961506962 1221 85 "cysteine desulfurase and stimulated by SufE; selenocysteine lyase and PLP-dependent" +BW25113_1680__5prime sufS__5prime 0 1754781 1754978 -1 178 0.08585858585858586 198 17 "cysteine desulfurase and stimulated by SufE; selenocysteine lyase and PLP-dependent" +BW25113_1680__3prime sufS__3prime 0 1753362 1753559 -1 550 0.13131313131313133 198 26 "cysteine desulfurase and stimulated by SufE; selenocysteine lyase and PLP-dependent" +BW25113_1681 sufD 0 1754777 1756048 -1 1760 0.06289308176100629 1272 80 "component of SufBCD Fe-S cluster assembly scaffold" +BW25113_1681__5prime sufD__5prime 0 1756049 1756246 -1 751 0.1414141414141414 198 28 "component of SufBCD Fe-S cluster assembly scaffold" +BW25113_1681__3prime sufD__3prime 0 1754579 1754776 -1 112 0.03535353535353535 198 7 "component of SufBCD Fe-S cluster assembly scaffold" +BW25113_1682 sufC 0 1756023 1756769 -1 1123 0.058902275769745646 747 44 "SufBCD Fe-S cluster assembly scaffold protein and ATP-binding protein" +BW25113_1682__5prime sufC__5prime 0 1756770 1756967 -1 455 0.08080808080808081 198 16 "SufBCD Fe-S cluster assembly scaffold protein and ATP-binding protein" +BW25113_1682__3prime sufC__3prime 0 1755825 1756022 -1 274 0.0707070707070707 198 14 "SufBCD Fe-S cluster assembly scaffold protein and ATP-binding protein" +BW25113_1683 sufB 0 1756779 1758266 -1 2073 0.05779569892473118 1488 86 "component of SufBCD Fe-S cluster assembly scaffold" +BW25113_1683__5prime sufB__5prime 0 1758267 1758464 -1 174 0.08080808080808081 198 16 "component of SufBCD Fe-S cluster assembly scaffold" +BW25113_1683__3prime sufB__3prime 0 1756581 1756778 -1 81 0.03535353535353535 198 7 "component of SufBCD Fe-S cluster assembly scaffold" +BW25113_1684 sufA 0 1758275 1758643 -1 106 0.032520325203252036 369 12 "Fe-S cluster assembly protein" +BW25113_1684__5prime sufA__5prime 0 1758644 1758841 -1 124 0.045454545454545456 198 9 "Fe-S cluster assembly protein" +BW25113_1684__3prime sufA__3prime 0 1758077 1758274 -1 357 0.09090909090909091 198 18 "Fe-S cluster assembly protein" +BW25113_4430 rydB 0 1758970 1759037 -1 7 0.014705882352941176 68 1 "novel sRNA and function unknown" +BW25113_4430__5prime rydB__5prime 0 1759038 1759235 -1 80 0.030303030303030304 198 6 "novel sRNA and function unknown" +BW25113_4430__3prime rydB__3prime 0 1758772 1758969 -1 63 0.025252525252525252 198 5 "novel sRNA and function unknown" +BW25113_1685 ydiH 0 1759191 1759379 -1 118 0.05291005291005291 189 10 "uncharacterized protein" +BW25113_1685__5prime ydiH__5prime 0 1759380 1759577 -1 54 0.020202020202020204 198 4 "uncharacterized protein" +BW25113_1685__3prime ydiH__3prime 0 1758993 1759190 -1 87 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_1686 menI 0 1759479 1759889 -1 376 0.043795620437956206 411 18 "1 and 4-dihydroxy-2-naphthoyl-CoA hydrolase" +BW25113_1686__5prime menI__5prime 0 1759890 1760087 -1 159 0.06060606060606061 198 12 "1 and 4-dihydroxy-2-naphthoyl-CoA hydrolase" +BW25113_1686__3prime menI__3prime 0 1759281 1759478 -1 156 0.06060606060606061 198 12 "1 and 4-dihydroxy-2-naphthoyl-CoA hydrolase" +BW25113_1687 ydiJ 0 1759886 1762942 -1 2784 0.04121687929342493 3057 126 "putative FAD-linked oxidoreductase" +BW25113_1687__5prime ydiJ__5prime 0 1762943 1763140 -1 462 0.07575757575757576 198 15 "putative FAD-linked oxidoreductase" +BW25113_1687__3prime ydiJ__3prime 0 1759688 1759885 -1 260 0.0707070707070707 198 14 "putative FAD-linked oxidoreductase" +BW25113_1688 ydiK 0 1763331 1764443 1 1936 0.07816711590296496 1113 87 "UPF0118 family inner membrane protein" +BW25113_1688__5prime ydiK__5prime 0 1763133 1763330 1 13 0.010101010101010102 198 2 "UPF0118 family inner membrane protein" +BW25113_1688__3prime ydiK__3prime 0 1764444 1764641 1 352 0.08585858585858586 198 17 "UPF0118 family inner membrane protein" +BW25113_4431 rprA 0 1764629 1764734 1 703 0.22641509433962265 106 24 "sRNA antisense activator for RpoS translation and Hfq-dependent" +BW25113_4431__5prime rprA__5prime 0 1764431 1764628 1 352 0.08585858585858586 198 17 "sRNA antisense activator for RpoS translation and Hfq-dependent" +BW25113_4431__3prime rprA__3prime 0 1764735 1764932 1 1197 0.20202020202020202 198 40 "sRNA antisense activator for RpoS translation and Hfq-dependent" +BW25113_1689 ydiL 0 1764872 1765228 1 2721 0.23249299719887956 357 83 "putative HTH domain DNA-binding protein" +BW25113_1689__5prime ydiL__5prime 0 1764674 1764871 1 1432 0.24242424242424243 198 48 "putative HTH domain DNA-binding protein" +BW25113_1689__3prime ydiL__3prime 0 1765229 1765426 1 993 0.23232323232323232 198 46 "putative HTH domain DNA-binding protein" +BW25113_1690 ydiM 0 1765328 1766542 1 12876 0.28888888888888886 1215 351 "MFS superfamily sugar transport 1 family protein" +BW25113_1690__5prime ydiM__5prime 0 1765130 1765327 1 594 0.16161616161616163 198 32 "MFS superfamily sugar transport 1 family protein" +BW25113_1690__3prime ydiM__3prime 0 1766543 1766740 1 173 0.09090909090909091 198 18 "MFS superfamily sugar transport 1 family protein" +BW25113_1691 ydiN 0 1766769 1768034 1 11929 0.24960505529225907 1266 316 "MFS transporter superfamily protein" +BW25113_1691__5prime ydiN__5prime 0 1766571 1766768 1 129 0.06060606060606061 198 12 "MFS transporter superfamily protein" +BW25113_1691__3prime ydiN__3prime 0 1768035 1768232 1 1118 0.18181818181818182 198 36 "MFS transporter superfamily protein" +BW25113_1692 ydiB 0 1768046 1768912 1 3348 0.13725490196078433 867 119 "quinate/shikimate 5-dehydrogenase and NAD(P)-binding" +BW25113_1692__5prime ydiB__5prime 0 1767848 1768045 1 477 0.12121212121212122 198 24 "quinate/shikimate 5-dehydrogenase and NAD(P)-binding" +BW25113_1692__3prime ydiB__3prime 0 1768913 1769110 1 77 0.045454545454545456 198 9 "quinate/shikimate 5-dehydrogenase and NAD(P)-binding" +BW25113_1693 aroD 0 1768943 1769701 1 1332 0.10276679841897234 759 78 "3-dehydroquinate dehydratase" +BW25113_1693__5prime aroD__5prime 0 1768745 1768942 1 377 0.06565656565656566 198 13 "3-dehydroquinate dehydratase" +BW25113_1693__3prime aroD__3prime 0 1769702 1769899 1 363 0.07575757575757576 198 15 "3-dehydroquinate dehydratase" +BW25113_1694 ydiF 0 1769844 1771439 1 10008 0.19172932330827067 1596 306 "putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit" +BW25113_1694__5prime ydiF__5prime 0 1769646 1769843 1 189 0.045454545454545456 198 9 "putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit" +BW25113_1694__3prime ydiF__3prime 0 1771440 1771637 1 608 0.1111111111111111 198 22 "putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit" +BW25113_1695 ydiO 0 1771453 1772604 1 2848 0.09809027777777778 1152 113 "putative acyl-CoA dehydrogenase" +BW25113_1695__5prime ydiO__5prime 0 1771255 1771452 1 613 0.14646464646464646 198 29 "putative acyl-CoA dehydrogenase" +BW25113_1695__3prime ydiO__3prime 0 1772605 1772802 1 219 0.07575757575757576 198 15 "putative acyl-CoA dehydrogenase" +BW25113_1696 ydiP 0 1772647 1773558 -1 2903 0.13925438596491227 912 127 "putative DNA-binding transcriptional regulator" +BW25113_1696__5prime ydiP__5prime 0 1773559 1773756 -1 680 0.15656565656565657 198 31 "putative DNA-binding transcriptional regulator" +BW25113_1696__3prime ydiP__3prime 0 1772449 1772646 -1 245 0.09090909090909091 198 18 "putative DNA-binding transcriptional regulator" +BW25113_1697 ydiQ 0 1773874 1774638 1 1226 0.06797385620915032 765 52 "putative electron transfer flavoprotein subunit" +BW25113_1697__5prime ydiQ__5prime 0 1773676 1773873 1 322 0.11616161616161616 198 23 "putative electron transfer flavoprotein subunit" +BW25113_1697__3prime ydiQ__3prime 0 1774639 1774836 1 259 0.0707070707070707 198 14 "putative electron transfer flavoprotein subunit" +BW25113_1698 ydiR 0 1774658 1775596 1 1008 0.06283280085197018 939 59 "putative electron transfer flavoprotein and FAD-binding subunit" +BW25113_1698__5prime ydiR__5prime 0 1774460 1774657 1 141 0.030303030303030304 198 6 "putative electron transfer flavoprotein and FAD-binding subunit" +BW25113_1698__3prime ydiR__3prime 0 1775597 1775794 1 202 0.04040404040404041 198 8 "putative electron transfer flavoprotein and FAD-binding subunit" +BW25113_1699 ydiS 0 1775652 1776941 1 1620 0.053488372093023255 1290 69 "putative oxidoreductase" +BW25113_1699__5prime ydiS__5prime 0 1775454 1775651 1 94 0.04040404040404041 198 8 "putative oxidoreductase" +BW25113_1699__3prime ydiS__3prime 0 1776942 1777139 1 172 0.05555555555555555 198 11 "putative oxidoreductase" +BW25113_1700 ydiT 0 1776938 1777231 1 288 0.061224489795918366 294 18 "putative 3Fe-4S ferredoxin-type protein" +BW25113_1700__5prime ydiT__5prime 0 1776740 1776937 1 111 0.015151515151515152 198 3 "putative 3Fe-4S ferredoxin-type protein" +BW25113_1700__3prime ydiT__3prime 0 1777232 1777429 1 414 0.06565656565656566 198 13 "putative 3Fe-4S ferredoxin-type protein" +BW25113_1701 fadK 0 1777288 1778934 1 4439 0.11050394656952034 1647 182 "short chain acyl-CoA synthetase and anaerobic" +BW25113_1701__5prime fadK__5prime 0 1777090 1777287 1 183 0.045454545454545456 198 9 "short chain acyl-CoA synthetase and anaerobic" +BW25113_1701__3prime fadK__3prime 0 1778935 1779132 1 1458 0.25252525252525254 198 50 "short chain acyl-CoA synthetase and anaerobic" +BW25113_1702 ppsA 0 1778991 1781369 -1 5000 0.08364859184531316 2379 199 "phosphoenolpyruvate synthase" +BW25113_1702__5prime ppsA__5prime 0 1781370 1781567 -1 180 0.03535353535353535 198 7 "phosphoenolpyruvate synthase" +BW25113_1702__3prime ppsA__3prime 0 1778793 1778990 -1 469 0.09090909090909091 198 18 "phosphoenolpyruvate synthase" +BW25113_1703 ppsR 0 1781702 1782535 1 1875 0.1079136690647482 834 90 "bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase" +BW25113_1703__5prime ppsR__5prime 0 1781504 1781701 1 217 0.050505050505050504 198 10 "bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase" +BW25113_1703__3prime ppsR__3prime 0 1782536 1782733 1 367 0.0707070707070707 198 14 "bifunctional regulatory protein: PEP synthase kinase and PEP synthase pyrophosphorylase" +BW25113_1704 aroH 0 1782692 1783738 1 950 0.05253104106972302 1047 55 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and tryptophan repressible" +BW25113_1704__5prime aroH__5prime 0 1782494 1782691 1 212 0.045454545454545456 198 9 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and tryptophan repressible" +BW25113_1704__3prime aroH__3prime 0 1783739 1783936 1 0 0.0 198 0 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and tryptophan repressible" +BW25113_1705 ydiE 0 1783870 1784061 1 113 0.041666666666666664 192 8 "hemin uptake protein HemP homolog" +BW25113_1705__5prime ydiE__5prime 0 1783672 1783869 1 42 0.020202020202020204 198 4 "hemin uptake protein HemP homolog" +BW25113_1705__3prime ydiE__3prime 0 1784062 1784259 1 464 0.13636363636363635 198 27 "hemin uptake protein HemP homolog" +BW25113_1706 ydiU 0 1784065 1785501 -1 2463 0.0779401530967293 1437 112 "UPF0061 family protein" +BW25113_1706__5prime ydiU__5prime 0 1785502 1785699 -1 767 0.16161616161616163 198 32 "UPF0061 family protein" +BW25113_1706__3prime ydiU__3prime 0 1783867 1784064 -1 113 0.04040404040404041 198 8 "UPF0061 family protein" +BW25113_1707 ydiV 0 1785564 1786277 -1 2795 0.16666666666666666 714 119 "anti-FlhD4C2 factor and inactive EAL family phosphodiesterase" +BW25113_1707__5prime ydiV__5prime 0 1786278 1786475 -1 649 0.12121212121212122 198 24 "anti-FlhD4C2 factor and inactive EAL family phosphodiesterase" +BW25113_1707__3prime ydiV__3prime 0 1785366 1785563 -1 639 0.15151515151515152 198 30 "anti-FlhD4C2 factor and inactive EAL family phosphodiesterase" +BW25113_1708 nlpC 0 1786524 1786988 -1 1754 0.12043010752688173 465 56 "putative C40 clan peptidase lipoprotein" +BW25113_1708__5prime nlpC__5prime 0 1786989 1787186 -1 109 0.025252525252525252 198 5 "putative C40 clan peptidase lipoprotein" +BW25113_1708__3prime nlpC__3prime 0 1786326 1786523 -1 593 0.10101010101010101 198 20 "putative C40 clan peptidase lipoprotein" +BW25113_1709 btuD 0 1787066 1787815 -1 776 0.056 750 42 "vitamin B12 transporter subunit : ATP-binding component of ABC superfamily" +BW25113_1709__5prime btuD__5prime 0 1787816 1788013 -1 248 0.045454545454545456 198 9 "vitamin B12 transporter subunit : ATP-binding component of ABC superfamily" +BW25113_1709__3prime btuD__3prime 0 1786868 1787065 -1 308 0.06565656565656566 198 13 "vitamin B12 transporter subunit : ATP-binding component of ABC superfamily" +BW25113_1710 btuE 0 1787815 1788366 -1 410 0.043478260869565216 552 24 "glutathione peroxidase" +BW25113_1710__5prime btuE__5prime 0 1788367 1788564 -1 150 0.05555555555555555 198 11 "glutathione peroxidase" +BW25113_1710__3prime btuE__3prime 0 1787617 1787814 -1 226 0.07575757575757576 198 15 "glutathione peroxidase" +BW25113_1711 btuC 0 1788429 1789409 -1 629 0.047910295616717634 981 47 "vitamin B12 transporter subunit: membrane component of ABC superfamily" +BW25113_1711__5prime btuC__5prime 0 1789410 1789607 -1 64 0.030303030303030304 198 6 "vitamin B12 transporter subunit: membrane component of ABC superfamily" +BW25113_1711__3prime btuC__3prime 0 1788231 1788428 -1 129 0.050505050505050504 198 10 "vitamin B12 transporter subunit: membrane component of ABC superfamily" +BW25113_1712 ihfA 0 1789510 1789809 -1 109 0.04 300 12 "integration host factor (IHF) and DNA-binding protein and alpha subunit" +BW25113_1712__5prime ihfA__5prime 0 1789810 1790007 -1 0 0.0 198 0 "integration host factor (IHF) and DNA-binding protein and alpha subunit" +BW25113_1712__3prime ihfA__3prime 0 1789312 1789509 -1 45 0.020202020202020204 198 4 "integration host factor (IHF) and DNA-binding protein and alpha subunit" +BW25113_1713 pheT 0 1789814 1792201 -1 0 0.0 2388 0 "phenylalanine tRNA synthetase and beta subunit" +BW25113_1713__5prime pheT__5prime 0 1792202 1792399 -1 17 0.005050505050505051 198 1 "phenylalanine tRNA synthetase and beta subunit" +BW25113_1713__3prime pheT__3prime 0 1789616 1789813 -1 45 0.030303030303030304 198 6 "phenylalanine tRNA synthetase and beta subunit" +BW25113_1714 pheS 0 1792216 1793199 -1 17 0.0010162601626016261 984 1 "phenylalanine tRNA synthetase and alpha subunit" +BW25113_1714__5prime pheS__5prime 0 1793200 1793397 -1 0 0.0 198 0 "phenylalanine tRNA synthetase and alpha subunit" +BW25113_1714__3prime pheS__3prime 0 1792018 1792215 -1 0 0.0 198 0 "phenylalanine tRNA synthetase and alpha subunit" +BW25113_1715 pheM 0 1793483 1793527 -1 14 0.022222222222222223 45 1 "phenylalanyl-tRNA synthetase operon leader peptide" +BW25113_1715__5prime pheM__5prime 0 1793528 1793725 -1 5 0.005050505050505051 198 1 "phenylalanyl-tRNA synthetase operon leader peptide" +BW25113_1715__3prime pheM__3prime 0 1793285 1793482 -1 0 0.0 198 0 "phenylalanyl-tRNA synthetase operon leader peptide" +BW25113_1716 rplT 0 1793650 1794006 -1 0 0.0 357 0 "50S ribosomal subunit protein L20" +BW25113_1716__5prime rplT__5prime 0 1794007 1794204 -1 0 0.0 198 0 "50S ribosomal subunit protein L20" +BW25113_1716__3prime rplT__3prime 0 1793452 1793649 -1 19 0.010101010101010102 198 2 "50S ribosomal subunit protein L20" +BW25113_1717 rpmI 0 1794059 1794256 -1 0 0.0 198 0 "50S ribosomal subunit protein L35" +BW25113_1717__5prime rpmI__5prime 0 1794257 1794454 -1 0 0.0 198 0 "50S ribosomal subunit protein L35" +BW25113_1717__3prime rpmI__3prime 0 1793861 1794058 -1 0 0.0 198 0 "50S ribosomal subunit protein L35" +BW25113_1718 infC 0 1794353 1794895 -1 0 0.0 543 0 "translation initiation factor IF-3" +BW25113_1718__5prime infC__5prime 0 1794896 1795093 -1 0 0.0 198 0 "translation initiation factor IF-3" +BW25113_1718__3prime infC__3prime 0 1794155 1794352 -1 0 0.0 198 0 "translation initiation factor IF-3" +BW25113_1719 thrS 0 1794899 1796827 -1 5 0.0005184033177812338 1929 1 "threonyl-tRNA synthetase" +BW25113_1719__5prime thrS__5prime 0 1796828 1797025 -1 158 0.020202020202020204 198 4 "threonyl-tRNA synthetase" +BW25113_1719__3prime thrS__3prime 0 1794701 1794898 -1 0 0.0 198 0 "threonyl-tRNA synthetase" +BW25113_4494 arpB 0 1797351 1799250 1 12873 0.22578947368421054 1900 429 "1797350_1799250" +BW25113_4494__5prime arpB__5prime 0 1797153 1797350 1 455 0.10606060606060606 198 21 "1797350_1799250" +BW25113_4494__3prime arpB__3prime 0 1799251 1799448 1 854 0.18686868686868688 198 37 "1797350_1799250" +BW25113_4535 yniD 0 1799422 1799529 1 357 0.17592592592592593 108 19 "uncharacterized protein" +BW25113_4535__5prime yniD__5prime 0 1799224 1799421 1 791 0.19696969696969696 198 39 "uncharacterized protein" +BW25113_4535__3prime yniD__3prime 0 1799530 1799727 1 319 0.07575757575757576 198 15 "uncharacterized protein" +BW25113_1722 ydiY 0 1799582 1800340 -1 2999 0.15019762845849802 759 114 "acid-inducible putative outer membrane protein" +BW25113_1722__5prime ydiY__5prime 0 1800341 1800538 -1 63 0.020202020202020204 198 4 "acid-inducible putative outer membrane protein" +BW25113_1722__3prime ydiY__3prime 0 1799384 1799581 -1 888 0.22727272727272727 198 45 "acid-inducible putative outer membrane protein" +BW25113_1723 pfkB 0 1800627 1801556 1 1633 0.09462365591397849 930 88 "6-phosphofructokinase II" +BW25113_1723__5prime pfkB__5prime 0 1800429 1800626 1 98 0.04040404040404041 198 8 "6-phosphofructokinase II" +BW25113_1723__3prime pfkB__3prime 0 1801557 1801754 1 63 0.030303030303030304 198 6 "6-phosphofructokinase II" +BW25113_1724 ydiZ 0 1801657 1801947 1 127 0.037800687285223365 291 11 "uncharacterized protein" +BW25113_1724__5prime ydiZ__5prime 0 1801459 1801656 1 171 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_1724__3prime ydiZ__3prime 0 1801948 1802145 1 406 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_1725 yniA 0 1802053 1802913 1 937 0.04878048780487805 861 42 "fructosamine kinase family protein" +BW25113_1725__5prime yniA__5prime 0 1801855 1802052 1 391 0.08585858585858586 198 17 "fructosamine kinase family protein" +BW25113_1725__3prime yniA__3prime 0 1802914 1803111 1 846 0.11616161616161616 198 23 "fructosamine kinase family protein" +BW25113_1726 yniB 0 1802954 1803490 -1 964 0.05772811918063315 537 31 "putative inner membrane protein" +BW25113_1726__5prime yniB__5prime 0 1803491 1803688 -1 553 0.10606060606060606 198 21 "putative inner membrane protein" +BW25113_1726__3prime yniB__3prime 0 1802756 1802953 -1 409 0.1111111111111111 198 22 "putative inner membrane protein" +BW25113_1727 yniC 0 1803637 1804305 1 719 0.07174887892376682 669 48 "2-deoxyglucose-6-P phosphatase" +BW25113_1727__5prime yniC__5prime 0 1803439 1803636 1 586 0.10101010101010101 198 20 "2-deoxyglucose-6-P phosphatase" +BW25113_1727__3prime yniC__3prime 0 1804306 1804503 1 53 0.03535353535353535 198 7 "2-deoxyglucose-6-P phosphatase" +BW25113_1728 ydjM 0 1804468 1805058 1 623 0.06260575296108291 591 37 "inner membrane protein regulated by LexA" +BW25113_1728__5prime ydjM__5prime 0 1804270 1804467 1 42 0.030303030303030304 198 6 "inner membrane protein regulated by LexA" +BW25113_1728__3prime ydjM__3prime 0 1805059 1805256 1 215 0.08080808080808081 198 16 "inner membrane protein regulated by LexA" +BW25113_1729 ydjN 0 1805191 1806582 1 2748 0.09410919540229885 1392 131 "putative transporter" +BW25113_1729__5prime ydjN__5prime 0 1804993 1805190 1 299 0.10101010101010101 198 20 "putative transporter" +BW25113_1729__3prime ydjN__3prime 0 1806583 1806780 1 954 0.21212121212121213 198 42 "putative transporter" +BW25113_1730 ydjO 0 1806586 1807389 -1 1734 0.11940298507462686 804 96 "uncharacterized protein" +BW25113_1730__5prime ydjO__5prime 0 1807390 1807587 -1 51 0.015151515151515152 198 3 "uncharacterized protein" +BW25113_1730__3prime ydjO__3prime 0 1806388 1806585 -1 524 0.17676767676767677 198 35 "uncharacterized protein" +BW25113_1731 cedA 0 1807678 1807920 -1 1397 0.16872427983539096 243 41 "cell division modulator" +BW25113_1731__5prime cedA__5prime 0 1807921 1808118 -1 273 0.06060606060606061 198 12 "cell division modulator" +BW25113_1731__3prime cedA__3prime 0 1807480 1807677 -1 643 0.09595959595959595 198 19 "cell division modulator" +BW25113_1732 katE 0 1808124 1810385 1 2471 0.054376657824933686 2262 123 "catalase HPII and heme d-containing" +BW25113_1732__5prime katE__5prime 0 1807926 1808123 1 166 0.05555555555555555 198 11 "catalase HPII and heme d-containing" +BW25113_1732__3prime katE__3prime 0 1810386 1810583 1 138 0.04040404040404041 198 8 "catalase HPII and heme d-containing" +1810441_1810630 1810441_1810630 0 1810442 1810630 1 151 0.047619047619047616 189 9 "1810441_1810630" +1810441_1810630__5prime 1810441_1810630__5prime 0 1810244 1810441 1 315 0.06565656565656566 198 13 "1810441_1810630" +1810441_1810630__3prime 1810441_1810630__3prime 0 1810631 1810828 1 539 0.11616161616161616 198 23 "1810441_1810630" +BW25113_1733 chbG 0 1810643 1811392 -1 1440 0.092 750 69 "chito-oligosaccharide deacetylase" +BW25113_1733__5prime chbG__5prime 0 1811393 1811590 -1 147 0.06060606060606061 198 12 "chito-oligosaccharide deacetylase" +BW25113_1733__3prime chbG__3prime 0 1810445 1810642 -1 151 0.045454545454545456 198 9 "chito-oligosaccharide deacetylase" +BW25113_1734 chbF 0 1811405 1812757 -1 7422 0.23059866962305986 1353 312 "phospho-chitobiase; general 6-phospho-beta-glucosidase activity" +BW25113_1734__5prime chbF__5prime 0 1812758 1812955 -1 424 0.15656565656565657 198 31 "phospho-chitobiase; general 6-phospho-beta-glucosidase activity" +BW25113_1734__3prime chbF__3prime 0 1811207 1811404 -1 527 0.12626262626262627 198 25 "phospho-chitobiase; general 6-phospho-beta-glucosidase activity" +BW25113_1735 chbR 0 1812862 1813704 -1 3818 0.1767497034400949 843 149 '"repressor of chb operon for N and N''-diacetylchitobiose utilization"' +BW25113_1735__5prime chbR__5prime 0 1813705 1813902 -1 1805 0.19696969696969696 198 39 '"repressor of chb operon for N and N''-diacetylchitobiose utilization"' +BW25113_1735__3prime chbR__3prime 0 1812664 1812861 -1 1170 0.21717171717171718 198 43 '"repressor of chb operon for N and N''-diacetylchitobiose utilization"' +BW25113_1736 chbA 0 1813712 1814062 -1 1839 0.1339031339031339 351 47 '"N and N''-diacetylchitobiose-specific enzyme IIA component of PTS"' +BW25113_1736__5prime chbA__5prime 0 1814063 1814260 -1 354 0.07575757575757576 198 15 '"N and N''-diacetylchitobiose-specific enzyme IIA component of PTS"' +BW25113_1736__3prime chbA__3prime 0 1813514 1813711 -1 1318 0.16666666666666666 198 33 '"N and N''-diacetylchitobiose-specific enzyme IIA component of PTS"' +BW25113_1737 chbC 0 1814113 1815471 -1 5614 0.14495952906548934 1359 197 '"N and N''-diacetylchitobiose-specific enzyme IIC component of PTS"' +BW25113_1737__5prime chbC__5prime 0 1815472 1815669 -1 503 0.10606060606060606 198 21 '"N and N''-diacetylchitobiose-specific enzyme IIC component of PTS"' +BW25113_1737__3prime chbC__3prime 0 1813915 1814112 -1 335 0.08585858585858586 198 17 '"N and N''-diacetylchitobiose-specific enzyme IIC component of PTS"' +BW25113_1738 chbB 0 1815556 1815876 -1 970 0.1277258566978193 321 41 '"N and N''-diacetylchitobiose-specific enzyme IIB component of PTS"' +BW25113_1738__5prime chbB__5prime 0 1815877 1816074 -1 2187 0.18181818181818182 198 36 '"N and N''-diacetylchitobiose-specific enzyme IIB component of PTS"' +BW25113_1738__3prime chbB__3prime 0 1815358 1815555 -1 129 0.04040404040404041 198 8 '"N and N''-diacetylchitobiose-specific enzyme IIB component of PTS"' +BW25113_1739 osmE 0 1816175 1816513 -1 698 0.10324483775811209 339 35 "osmotically-inducible lipoprotein" +BW25113_1739__5prime osmE__5prime 0 1816514 1816711 -1 284 0.045454545454545456 198 9 "osmotically-inducible lipoprotein" +BW25113_1739__3prime osmE__3prime 0 1815977 1816174 -1 1071 0.08585858585858586 198 17 "osmotically-inducible lipoprotein" +BW25113_1740 nadE 0 1816715 1817542 1 0 0.0 828 0 "NAD synthetase and NH3/glutamine-dependent" +BW25113_1740__5prime nadE__5prime 0 1816517 1816714 1 284 0.045454545454545456 198 9 "NAD synthetase and NH3/glutamine-dependent" +BW25113_1740__3prime nadE__3prime 0 1817543 1817740 1 934 0.07575757575757576 198 15 "NAD synthetase and NH3/glutamine-dependent" +1817587_1817685 1817587_1817685 0 1817588 1817685 1 35 0.05102040816326531 98 5 "1817587_1817685" +1817587_1817685__5prime 1817587_1817685__5prime 0 1817390 1817587 1 85 0.010101010101010102 198 2 "1817587_1817685" +1817587_1817685__3prime 1817587_1817685__3prime 0 1817686 1817883 1 1191 0.09595959595959595 198 19 "1817587_1817685" +BW25113_1741 cho 0 1817772 1818659 1 1019 0.038288288288288286 888 34 "endonuclease of nucleotide excision repair" +BW25113_1741__5prime cho__5prime 0 1817574 1817771 1 858 0.0707070707070707 198 14 "endonuclease of nucleotide excision repair" +BW25113_1741__3prime cho__3prime 0 1818660 1818857 1 197 0.08080808080808081 198 16 "endonuclease of nucleotide excision repair" +BW25113_1742 ves 0 1818619 1819194 -1 309 0.043402777777777776 576 25 "cold-and stress-inducible protein" +BW25113_1742__5prime ves__5prime 0 1819195 1819392 -1 217 0.07575757575757576 198 15 "cold-and stress-inducible protein" +BW25113_1742__3prime ves__3prime 0 1818421 1818618 -1 227 0.015151515151515152 198 3 "cold-and stress-inducible protein" +BW25113_1743 spy 0 1819397 1819882 -1 1519 0.09053497942386832 486 44 "periplasmic ATP-independent protein refolding chaperone and stress-induced" +BW25113_1743__5prime spy__5prime 0 1819883 1820080 -1 273 0.0707070707070707 198 14 "periplasmic ATP-independent protein refolding chaperone and stress-induced" +BW25113_1743__3prime spy__3prime 0 1819199 1819396 -1 212 0.0707070707070707 198 14 "periplasmic ATP-independent protein refolding chaperone and stress-induced" +BW25113_1744 astE 0 1820212 1821180 -1 2104 0.08668730650154799 969 84 "succinylglutamate desuccinylase" +BW25113_1744__5prime astE__5prime 0 1821181 1821378 -1 133 0.050505050505050504 198 10 "succinylglutamate desuccinylase" +BW25113_1744__3prime astE__3prime 0 1820014 1820211 -1 122 0.020202020202020204 198 4 "succinylglutamate desuccinylase" +BW25113_1745 astB 0 1821173 1822516 -1 904 0.03794642857142857 1344 51 "succinylarginine dihydrolase" +BW25113_1745__5prime astB__5prime 0 1822517 1822714 -1 182 0.045454545454545456 198 9 "succinylarginine dihydrolase" +BW25113_1745__3prime astB__3prime 0 1820975 1821172 -1 164 0.045454545454545456 198 9 "succinylarginine dihydrolase" +BW25113_1746 astD 0 1822513 1823991 -1 1270 0.0486815415821501 1479 72 "succinylglutamic semialdehyde dehydrogenase" +BW25113_1746__5prime astD__5prime 0 1823992 1824189 -1 105 0.030303030303030304 198 6 "succinylglutamic semialdehyde dehydrogenase" +BW25113_1746__3prime astD__3prime 0 1822315 1822512 -1 163 0.045454545454545456 198 9 "succinylglutamic semialdehyde dehydrogenase" +BW25113_1747 astA 0 1823988 1825022 -1 687 0.025120772946859903 1035 26 "arginine succinyltransferase" +BW25113_1747__5prime astA__5prime 0 1825023 1825220 -1 0 0.0 198 0 "arginine succinyltransferase" +BW25113_1747__3prime astA__3prime 0 1823790 1823987 -1 306 0.06060606060606061 198 12 "arginine succinyltransferase" +BW25113_1748 astC 0 1825019 1826239 -1 1342 0.04832104832104832 1221 59 "succinylornithine transaminase and PLP-dependent" +BW25113_1748__5prime astC__5prime 0 1826240 1826437 -1 20 0.010101010101010102 198 2 "succinylornithine transaminase and PLP-dependent" +BW25113_1748__3prime astC__3prime 0 1824821 1825018 -1 405 0.045454545454545456 198 9 "succinylornithine transaminase and PLP-dependent" +BW25113_1749 xthA 0 1826685 1827491 1 664 0.048327137546468404 807 39 "exonuclease III" +BW25113_1749__5prime xthA__5prime 0 1826487 1826684 1 103 0.025252525252525252 198 5 "exonuclease III" +BW25113_1749__3prime xthA__3prime 0 1827492 1827689 1 220 0.07575757575757576 198 15 "exonuclease III" +BW25113_1750 ydjX 0 1827658 1828368 1 2561 0.12236286919831224 711 87 "TVP38/TMEM64 family inner membrane protein" +BW25113_1750__5prime ydjX__5prime 0 1827460 1827657 1 258 0.08585858585858586 198 17 "TVP38/TMEM64 family inner membrane protein" +BW25113_1750__3prime ydjX__3prime 0 1828369 1828566 1 312 0.09090909090909091 198 18 "TVP38/TMEM64 family inner membrane protein" +BW25113_1751 ydjY 0 1828373 1829050 1 922 0.048672566371681415 678 33 "putative ferrodoxin-like lipoprotein" +BW25113_1751__5prime ydjY__5prime 0 1828175 1828372 1 603 0.13636363636363635 198 27 "putative ferrodoxin-like lipoprotein" +BW25113_1751__3prime ydjY__3prime 0 1829051 1829248 1 215 0.06565656565656566 198 13 "putative ferrodoxin-like lipoprotein" +BW25113_1752 ydjZ 0 1829065 1829772 1 605 0.05508474576271186 708 39 "TVP38/TMEM64 family inner membrane protein" +BW25113_1752__5prime ydjZ__5prime 0 1828867 1829064 1 160 0.030303030303030304 198 6 "TVP38/TMEM64 family inner membrane protein" +BW25113_1752__3prime ydjZ__3prime 0 1829773 1829970 1 100 0.030303030303030304 198 6 "TVP38/TMEM64 family inner membrane protein" +BW25113_1753 ynjA 0 1829772 1830320 1 459 0.04735883424408015 549 26 "carboxymuconolactone decarboxylase family protein" +BW25113_1753__5prime ynjA__5prime 0 1829574 1829771 1 60 0.04040404040404041 198 8 "carboxymuconolactone decarboxylase family protein" +BW25113_1753__3prime ynjA__3prime 0 1830321 1830518 1 41 0.025252525252525252 198 5 "carboxymuconolactone decarboxylase family protein" +BW25113_1754 ynjB 0 1830330 1831496 1 1349 0.05826906598114824 1167 68 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_1754__5prime ynjB__5prime 0 1830132 1830329 1 87 0.025252525252525252 198 5 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_1754__3prime ynjB__3prime 0 1831497 1831694 1 341 0.07575757575757576 198 15 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_1755 ynjC 0 1831469 1833004 1 3268 0.06575520833333333 1536 101 "inner membrane putative ABC superfamily transporter permease" +BW25113_1755__5prime ynjC__5prime 0 1831271 1831468 1 440 0.12626262626262627 198 25 "inner membrane putative ABC superfamily transporter permease" +BW25113_1755__3prime ynjC__3prime 0 1833005 1833202 1 118 0.03535353535353535 198 7 "inner membrane putative ABC superfamily transporter permease" +BW25113_1756 ynjD 0 1833004 1833657 1 960 0.045871559633027525 654 30 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_1756__5prime ynjD__5prime 0 1832806 1833003 1 1233 0.09090909090909091 198 18 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_1756__3prime ynjD__3prime 0 1833658 1833855 1 299 0.050505050505050504 198 10 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_1757 ynjE 0 1833724 1835031 1 1472 0.06804281345565749 1308 89 "molybdopterin synthase sulfurtransferase" +BW25113_1757__5prime ynjE__5prime 0 1833526 1833723 1 345 0.045454545454545456 198 9 "molybdopterin synthase sulfurtransferase" +BW25113_1757__3prime ynjE__3prime 0 1835032 1835229 1 179 0.050505050505050504 198 10 "molybdopterin synthase sulfurtransferase" +BW25113_1758 ynjF 0 1835040 1835660 -1 724 0.04669887278582931 621 29 "inner membrane protein and phosphatidylglycerophosphate synthase homolog" +BW25113_1758__5prime ynjF__5prime 0 1835661 1835858 -1 49 0.015151515151515152 198 3 "inner membrane protein and phosphatidylglycerophosphate synthase homolog" +BW25113_1758__3prime ynjF__3prime 0 1834842 1835039 -1 332 0.06060606060606061 198 12 "inner membrane protein and phosphatidylglycerophosphate synthase homolog" +BW25113_1759 nudG 0 1835747 1836154 1 646 0.07598039215686274 408 31 "CTP pyrophosphohydrolase; also hydrolyzes 2-hydroxy-dATP and 8-hydroxy-dGTP and 5-hydroxy-CTP and dCTP and 5-methyl-dCTP" +BW25113_1759__5prime nudG__5prime 0 1835549 1835746 1 231 0.05555555555555555 198 11 "CTP pyrophosphohydrolase; also hydrolyzes 2-hydroxy-dATP and 8-hydroxy-dGTP and 5-hydroxy-CTP and dCTP and 5-methyl-dCTP" +BW25113_1759__3prime nudG__3prime 0 1836155 1836352 1 1162 0.14646464646464646 198 29 "CTP pyrophosphohydrolase; also hydrolyzes 2-hydroxy-dATP and 8-hydroxy-dGTP and 5-hydroxy-CTP and dCTP and 5-methyl-dCTP" +BW25113_1760 ynjH 0 1836120 1836392 -1 1276 0.1282051282051282 273 35 "DUF1496 family protein" +BW25113_1760__5prime ynjH__5prime 0 1836393 1836590 -1 291 0.04040404040404041 198 8 "DUF1496 family protein" +BW25113_1760__3prime ynjH__3prime 0 1835922 1836119 -1 415 0.09090909090909091 198 18 "DUF1496 family protein" +BW25113_1761 gdhA 0 1836628 1837971 1 2149 0.07589285714285714 1344 102 "glutamate dehydrogenase and NADP-specific" +BW25113_1761__5prime gdhA__5prime 0 1836430 1836627 1 257 0.015151515151515152 198 3 "glutamate dehydrogenase and NADP-specific" +BW25113_1761__3prime gdhA__3prime 0 1837972 1838169 1 762 0.16161616161616163 198 32 "glutamate dehydrogenase and NADP-specific" +1837980_1838073 1837980_1838073 0 1837981 1838073 1 256 0.10752688172043011 93 10 "1837980_1838073" +1837980_1838073__5prime 1837980_1838073__5prime 0 1837783 1837980 1 222 0.06060606060606061 198 12 "1837980_1838073" +1837980_1838073__3prime 1837980_1838073__3prime 0 1838074 1838271 1 872 0.2222222222222222 198 44 "1837980_1838073" +BW25113_1762 ynjI 0 1838088 1839128 -1 5492 0.23631123919308358 1041 246 "inner membrane protein" +BW25113_1762__5prime ynjI__5prime 0 1839129 1839326 -1 866 0.16666666666666666 198 33 "inner membrane protein" +BW25113_1762__3prime ynjI__3prime 0 1837890 1838087 -1 300 0.05555555555555555 198 11 "inner membrane protein" +BW25113_1763 topB 0 1839256 1841217 -1 3284 0.07084607543323139 1962 139 "DNA topoisomerase III" +BW25113_1763__5prime topB__5prime 0 1841218 1841415 -1 235 0.09090909090909091 198 18 "DNA topoisomerase III" +BW25113_1763__3prime topB__3prime 0 1839058 1839255 -1 291 0.08585858585858586 198 17 "DNA topoisomerase III" +BW25113_1764 selD 0 1841222 1842265 -1 1273 0.06800766283524905 1044 71 "selenophosphate synthase" +BW25113_1764__5prime selD__5prime 0 1842266 1842463 -1 226 0.08585858585858586 198 17 "selenophosphate synthase" +BW25113_1764__3prime selD__3prime 0 1841024 1841221 -1 465 0.1111111111111111 198 22 "selenophosphate synthase" +BW25113_1765 ydjA 0 1842382 1842933 -1 965 0.06702898550724638 552 37 "putative oxidoreductase" +BW25113_1765__5prime ydjA__5prime 0 1842934 1843131 -1 308 0.09595959595959595 198 19 "putative oxidoreductase" +BW25113_1765__3prime ydjA__3prime 0 1842184 1842381 -1 233 0.10101010101010101 198 20 "putative oxidoreductase" +BW25113_1766 sppA 0 1843094 1844950 1 2960 0.05869682283252558 1857 109 "protease IV (signal peptide peptidase)" +BW25113_1766__5prime sppA__5prime 0 1842896 1843093 1 232 0.07575757575757576 198 15 "protease IV (signal peptide peptidase)" +BW25113_1766__3prime sppA__3prime 0 1844951 1845148 1 316 0.08080808080808081 198 16 "protease IV (signal peptide peptidase)" +BW25113_1767 ansA 0 1845117 1846133 1 1177 0.05014749262536873 1017 51 "cytoplasmic L-asparaginase 1" +BW25113_1767__5prime ansA__5prime 0 1844919 1845116 1 355 0.08585858585858586 198 17 "cytoplasmic L-asparaginase 1" +BW25113_1767__3prime ansA__3prime 0 1846134 1846331 1 61 0.045454545454545456 198 9 "cytoplasmic L-asparaginase 1" +BW25113_1768 pncA 0 1846144 1846785 1 2335 0.14641744548286603 642 94 "nicotinamidase/pyrazinamidase" +BW25113_1768__5prime pncA__5prime 0 1845946 1846143 1 57 0.030303030303030304 198 6 "nicotinamidase/pyrazinamidase" +BW25113_1768__3prime pncA__3prime 0 1846786 1846983 1 1567 0.2828282828282828 198 56 "nicotinamidase/pyrazinamidase" +1846818_1846854 1846818_1846854 0 1846819 1846854 1 175 0.3333333333333333 36 12 "1846818_1846854" +1846818_1846854__5prime 1846818_1846854__5prime 0 1846621 1846818 1 1536 0.31313131313131315 198 62 "1846818_1846854" +1846818_1846854__3prime 1846818_1846854__3prime 0 1846855 1847052 1 2491 0.3282828282828283 198 65 "1846818_1846854" +BW25113_1769 ydjE 0 1846878 1848236 -1 10028 0.22810890360559236 1359 310 "putative transporter" +BW25113_1769__5prime ydjE__5prime 0 1848237 1848434 -1 216 0.06060606060606061 198 12 "putative transporter" +BW25113_1769__3prime ydjE__3prime 0 1846680 1846877 -1 1763 0.35858585858585856 198 71 "putative transporter" +BW25113_1770 ydjF 0 1848353 1849111 -1 2050 0.1080368906455863 759 82 "putative DNA-binding transcriptional regulator" +BW25113_1770__5prime ydjF__5prime 0 1849112 1849309 -1 97 0.03535353535353535 198 7 "putative DNA-binding transcriptional regulator" +BW25113_1770__3prime ydjF__3prime 0 1848155 1848352 -1 812 0.06060606060606061 198 12 "putative DNA-binding transcriptional regulator" +BW25113_1771 ydjG 0 1849248 1850228 -1 1402 0.08256880733944955 981 81 "alpha-Keto reductase and NADH-dependent; can use methylglyoxal as substrate" +BW25113_1771__5prime ydjG__5prime 0 1850229 1850426 -1 269 0.08585858585858586 198 17 "alpha-Keto reductase and NADH-dependent; can use methylglyoxal as substrate" +BW25113_1771__3prime ydjG__3prime 0 1849050 1849247 -1 7 0.005050505050505051 198 1 "alpha-Keto reductase and NADH-dependent; can use methylglyoxal as substrate" +BW25113_1772 ydjH 0 1850238 1851185 -1 3796 0.17721518987341772 948 168 "putative kinase" +BW25113_1772__5prime ydjH__5prime 0 1851186 1851383 -1 1043 0.20707070707070707 198 41 "putative kinase" +BW25113_1772__3prime ydjH__3prime 0 1850040 1850237 -1 578 0.13636363636363635 198 27 "putative kinase" +BW25113_1773 ydjI 0 1851190 1852026 -1 4018 0.2019115890083632 837 169 "putative aldolase" +BW25113_1773__5prime ydjI__5prime 0 1852027 1852224 -1 668 0.13636363636363635 198 27 "putative aldolase" +BW25113_1773__3prime ydjI__3prime 0 1850992 1851189 -1 792 0.1414141414141414 198 28 "putative aldolase" +BW25113_1774 ydjJ 0 1852047 1853090 -1 4446 0.17049808429118773 1044 178 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1774__5prime ydjJ__5prime 0 1853091 1853288 -1 1206 0.20707070707070707 198 41 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1774__3prime ydjJ__3prime 0 1851849 1852046 -1 446 0.10101010101010101 198 20 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1775 ydjK 0 1853107 1854486 -1 7766 0.18478260869565216 1380 255 "putative transporter" +BW25113_1775__5prime ydjK__5prime 0 1854487 1854684 -1 223 0.09090909090909091 198 18 "putative transporter" +BW25113_1775__3prime ydjK__3prime 0 1852909 1853106 -1 231 0.10101010101010101 198 20 "putative transporter" +BW25113_1776 ydjL 0 1854513 1855589 -1 1059 0.051996285979572884 1077 56 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1776__5prime ydjL__5prime 0 1855590 1855787 -1 203 0.04040404040404041 198 8 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1776__3prime ydjL__3prime 0 1854315 1854512 -1 293 0.06565656565656566 198 13 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_1777 yeaC 0 1855959 1856231 -1 318 0.0695970695970696 273 19 "DUF1315 family protein" +BW25113_1777__5prime yeaC__5prime 0 1856232 1856429 -1 83 0.010101010101010102 198 2 "DUF1315 family protein" +BW25113_1777__3prime yeaC__3prime 0 1855761 1855958 -1 198 0.03535353535353535 198 7 "DUF1315 family protein" +BW25113_1778 msrB 0 1856273 1856686 -1 363 0.024154589371980676 414 10 "methionine sulfoxide reductase B" +BW25113_1778__5prime msrB__5prime 0 1856687 1856884 -1 0 0.0 198 0 "methionine sulfoxide reductase B" +BW25113_1778__3prime msrB__3prime 0 1856075 1856272 -1 120 0.050505050505050504 198 10 "methionine sulfoxide reductase B" +BW25113_1779 gapA 0 1857028 1858023 1 0 0.0 996 0 "glyceraldehyde-3-phosphate dehydrogenase A" +BW25113_1779__5prime gapA__5prime 0 1856830 1857027 1 28 0.005050505050505051 198 1 "glyceraldehyde-3-phosphate dehydrogenase A" +BW25113_1779__3prime gapA__3prime 0 1858024 1858221 1 110 0.045454545454545456 198 9 "glyceraldehyde-3-phosphate dehydrogenase A" +BW25113_1780 yeaD 0 1858107 1858991 1 1262 0.06666666666666667 885 59 "D-hexose-6-phosphate epimerase-like protein" +BW25113_1780__5prime yeaD__5prime 0 1857909 1858106 1 0 0.0 198 0 "D-hexose-6-phosphate epimerase-like protein" +BW25113_1780__3prime yeaD__3prime 0 1858992 1859189 1 150 0.06060606060606061 198 12 "D-hexose-6-phosphate epimerase-like protein" +1859009_1859030 1859009_1859030 0 1859010 1859030 1 0 0.0 21 0 "1859009_1859030" +1859009_1859030__5prime 1859009_1859030__5prime 0 1858812 1859009 1 275 0.0707070707070707 198 14 "1859009_1859030" +1859009_1859030__3prime 1859009_1859030__3prime 0 1859031 1859228 1 150 0.06060606060606061 198 12 "1859009_1859030" +BW25113_1781 yeaE 0 1859039 1859893 -1 854 0.03742690058479532 855 32 "aldo-keto reductase and methylglyoxal to acetol and NADPH-dependent" +BW25113_1781__5prime yeaE__5prime 0 1859894 1860091 -1 196 0.050505050505050504 198 10 "aldo-keto reductase and methylglyoxal to acetol and NADPH-dependent" +BW25113_1781__3prime yeaE__3prime 0 1858841 1859038 -1 304 0.09090909090909091 198 18 "aldo-keto reductase and methylglyoxal to acetol and NADPH-dependent" +BW25113_1782 mipA 0 1859983 1860729 -1 914 0.07898259705488621 747 59 "scaffolding protein for murein synthesizing machinery" +BW25113_1782__5prime mipA__5prime 0 1860730 1860927 -1 86 0.04040404040404041 198 8 "scaffolding protein for murein synthesizing machinery" +BW25113_1782__3prime mipA__3prime 0 1859785 1859982 -1 63 0.020202020202020204 198 4 "scaffolding protein for murein synthesizing machinery" +BW25113_1783 yeaG 0 1861165 1863099 1 2746 0.05426356589147287 1935 105 "protein kinase and endogenous substrate unidentified; autokinase" +BW25113_1783__5prime yeaG__5prime 0 1860967 1861164 1 282 0.06565656565656566 198 13 "protein kinase and endogenous substrate unidentified; autokinase" +BW25113_1783__3prime yeaG__3prime 0 1863100 1863297 1 442 0.11616161616161616 198 23 "protein kinase and endogenous substrate unidentified; autokinase" +1863148_1863187 1863148_1863187 0 1863149 1863187 1 12 0.02564102564102564 39 1 "1863148_1863187" +1863148_1863187__5prime 1863148_1863187__5prime 0 1862951 1863148 1 447 0.10101010101010101 198 20 "1863148_1863187" +1863148_1863187__3prime 1863148_1863187__3prime 0 1863188 1863385 1 382 0.08080808080808081 198 16 "1863148_1863187" +BW25113_1784 yeaH 0 1863212 1864495 1 2734 0.11059190031152648 1284 142 "UPF0229 family protein" +BW25113_1784__5prime yeaH__5prime 0 1863014 1863211 1 443 0.1111111111111111 198 22 "UPF0229 family protein" +BW25113_1784__3prime yeaH__3prime 0 1864496 1864693 1 233 0.06060606060606061 198 12 "UPF0229 family protein" +BW25113_1785 yeaI 0 1864642 1866117 1 4727 0.1070460704607046 1476 158 "putative membrane-anchored diguanylate cyclase" +BW25113_1785__5prime yeaI__5prime 0 1864444 1864641 1 346 0.08585858585858586 198 17 "putative membrane-anchored diguanylate cyclase" +BW25113_1785__3prime yeaI__3prime 0 1866118 1866315 1 596 0.09595959595959595 198 19 "putative membrane-anchored diguanylate cyclase" +BW25113_1786 yeaJ 0 1866298 1867788 1 7249 0.19047619047619047 1491 284 "putative diguanylate cyclase" +BW25113_1786__5prime yeaJ__5prime 0 1866100 1866297 1 591 0.09090909090909091 198 18 "putative diguanylate cyclase" +BW25113_1786__3prime yeaJ__3prime 0 1867789 1867986 1 1188 0.18181818181818182 198 36 "putative diguanylate cyclase" +BW25113_1787 yeaK 0 1867831 1868334 1 1364 0.07738095238095238 504 39 "aminoacyl-tRNA editing domain protein" +BW25113_1787__5prime yeaK__5prime 0 1867633 1867830 1 625 0.15656565656565657 198 31 "aminoacyl-tRNA editing domain protein" +BW25113_1787__3prime yeaK__3prime 0 1868335 1868532 1 177 0.020202020202020204 198 4 "aminoacyl-tRNA editing domain protein" +BW25113_1788 yoaI 0 1868335 1868439 -1 121 0.009523809523809525 105 1 "uncharacterized protein" +BW25113_1788__5prime yoaI__5prime 0 1868440 1868637 -1 63 0.020202020202020204 198 4 "uncharacterized protein" +BW25113_1788__3prime yoaI__3prime 0 1868137 1868334 -1 56 0.010101010101010102 198 2 "uncharacterized protein" +BW25113_1789 yeaL 0 1868609 1869055 1 517 0.05145413870246085 447 23 "UPF0756 family putative inner membrane protein" +BW25113_1789__5prime yeaL__5prime 0 1868411 1868608 1 56 0.015151515151515152 198 3 "UPF0756 family putative inner membrane protein" +BW25113_1789__3prime yeaL__3prime 0 1869056 1869253 1 68 0.03535353535353535 198 7 "UPF0756 family putative inner membrane protein" +BW25113_1790 yeaM 0 1869012 1869833 -1 1288 0.07542579075425791 822 62 "putative DNA-binding transcriptional regulator" +BW25113_1790__5prime yeaM__5prime 0 1869834 1870031 -1 220 0.045454545454545456 198 9 "putative DNA-binding transcriptional regulator" +BW25113_1790__3prime yeaM__3prime 0 1868814 1869011 -1 199 0.03535353535353535 198 7 "putative DNA-binding transcriptional regulator" +BW25113_1791 yeaN 0 1869930 1871111 1 1954 0.0727580372250423 1182 86 "putative transporter" +BW25113_1791__5prime yeaN__5prime 0 1869732 1869929 1 433 0.08585858585858586 198 17 "putative transporter" +BW25113_1791__3prime yeaN__3prime 0 1871112 1871309 1 182 0.025252525252525252 198 5 "putative transporter" +BW25113_1792 yeaO 0 1871166 1871513 1 288 0.04885057471264368 348 17 "DUF488 family protein" +BW25113_1792__5prime yeaO__5prime 0 1870968 1871165 1 177 0.050505050505050504 198 10 "DUF488 family protein" +BW25113_1792__3prime yeaO__3prime 0 1871514 1871711 1 132 0.05555555555555555 198 11 "DUF488 family protein" +BW25113_1793 yoaF 0 1871535 1871789 -1 193 0.043137254901960784 255 11 "DUF333 family outer membrane lipoprotein" +BW25113_1793__5prime yoaF__5prime 0 1871790 1871987 -1 29 0.015151515151515152 198 3 "DUF333 family outer membrane lipoprotein" +BW25113_1793__3prime yoaF__3prime 0 1871337 1871534 -1 195 0.0707070707070707 198 14 "DUF333 family outer membrane lipoprotein" +BW25113_1794 yeaP 0 1871972 1872997 1 3968 0.1442495126705653 1026 148 "diguanylate cyclase" +BW25113_1794__5prime yeaP__5prime 0 1871774 1871971 1 29 0.015151515151515152 198 3 "diguanylate cyclase" +BW25113_1794__3prime yeaP__3prime 0 1872998 1873195 1 1239 0.25252525252525254 198 50 "diguanylate cyclase" +BW25113_4676 yoaK 0 1873030 1873128 1 513 0.1717171717171717 99 17 "inner membrane-associated protein" +BW25113_4676__5prime yoaK__5prime 0 1872832 1873029 1 1700 0.32323232323232326 198 64 "inner membrane-associated protein" +BW25113_4676__3prime yoaK__3prime 0 1873129 1873326 1 839 0.1919191919191919 198 38 "inner membrane-associated protein" +BW25113_4675 yoaJ 0 1873131 1873205 1 616 0.32 75 24 "inner membrane-associated protein" +BW25113_4675__5prime yoaJ__5prime 0 1872933 1873130 1 1209 0.21212121212121213 198 42 "inner membrane-associated protein" +BW25113_4675__3prime yoaJ__3prime 0 1873206 1873403 1 783 0.1717171717171717 198 34 "inner membrane-associated protein" +BW25113_1795 yeaQ 0 1873264 1873512 -1 1316 0.20481927710843373 249 51 "UPF0410 family protein" +BW25113_1795__5prime yeaQ__5prime 0 1873513 1873710 -1 773 0.15151515151515152 198 30 "UPF0410 family protein" +BW25113_1795__3prime yeaQ__3prime 0 1873066 1873263 -1 1105 0.21212121212121213 198 42 "UPF0410 family protein" +BW25113_1796 yoaG 0 1873660 1873842 -1 390 0.12568306010928962 183 23 "uncharacterized protein" +BW25113_1796__5prime yoaG__5prime 0 1873843 1874040 -1 2888 0.3282828282828283 198 65 "uncharacterized protein" +BW25113_1796__3prime yoaG__3prime 0 1873462 1873659 -1 686 0.1414141414141414 198 28 "uncharacterized protein" +BW25113_1797 yeaR 0 1873846 1874205 -1 3307 0.2222222222222222 360 80 "DUF1971 family protein and nitrate-inducible" +BW25113_1797__5prime yeaR__5prime 0 1874206 1874403 -1 599 0.12121212121212122 198 24 "DUF1971 family protein and nitrate-inducible" +BW25113_1797__3prime yeaR__3prime 0 1873648 1873845 -1 390 0.11616161616161616 198 23 "DUF1971 family protein and nitrate-inducible" +BW25113_1798 leuE 0 1874378 1875016 -1 3171 0.16118935837245696 639 103 "leucine efflux protein" +BW25113_1798__5prime leuE__5prime 0 1875017 1875214 -1 807 0.11616161616161616 198 23 "leucine efflux protein" +BW25113_1798__3prime leuE__3prime 0 1874180 1874377 -1 549 0.08585858585858586 198 17 "leucine efflux protein" +BW25113_1799 dmlR 0 1875143 1876066 -1 3086 0.10822510822510822 924 100 "transcriptional activator of dmlA" +BW25113_1799__5prime dmlR__5prime 0 1876067 1876264 -1 192 0.06565656565656566 198 13 "transcriptional activator of dmlA" +BW25113_1799__3prime dmlR__3prime 0 1874945 1875142 -1 892 0.16666666666666666 198 33 "transcriptional activator of dmlA" +BW25113_1800 dmlA 0 1876169 1877254 1 1690 0.070902394106814 1086 77 "D-malate oxidase and NAD-dependent; putative tartrate dehydrogenase" +BW25113_1800__5prime dmlA__5prime 0 1875971 1876168 1 181 0.0707070707070707 198 14 "D-malate oxidase and NAD-dependent; putative tartrate dehydrogenase" +BW25113_1800__3prime dmlA__3prime 0 1877255 1877452 1 436 0.13131313131313133 198 26 "D-malate oxidase and NAD-dependent; putative tartrate dehydrogenase" +BW25113_1801 yeaV 0 1877445 1878890 1 3166 0.08575380359612725 1446 124 "putative transporter" +BW25113_1801__5prime yeaV__5prime 0 1877247 1877444 1 407 0.13131313131313133 198 26 "putative transporter" +BW25113_1801__3prime yeaV__3prime 0 1878891 1879088 1 140 0.06060606060606061 198 12 "putative transporter" +BW25113_1802 yeaW 0 1878922 1880046 1 818 0.043555555555555556 1125 49 "putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster" +BW25113_1802__5prime yeaW__5prime 0 1878724 1878921 1 68 0.04040404040404041 198 8 "putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster" +BW25113_1802__3prime yeaW__3prime 0 1880047 1880244 1 41 0.025252525252525252 198 5 "putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster" +BW25113_1803 yeaX 0 1880102 1881067 1 1224 0.047619047619047616 966 46 "putative YeaWX dioxygenase beta subunit and reductase component" +BW25113_1803__5prime yeaX__5prime 0 1879904 1880101 1 126 0.030303030303030304 198 6 "putative YeaWX dioxygenase beta subunit and reductase component" +BW25113_1803__3prime yeaX__3prime 0 1881068 1881265 1 253 0.030303030303030304 198 6 "putative YeaWX dioxygenase beta subunit and reductase component" +BW25113_1804 rnd 0 1881121 1882248 -1 1155 0.04343971631205674 1128 49 "ribonuclease D" +BW25113_1804__5prime rnd__5prime 0 1882249 1882446 -1 169 0.05555555555555555 198 11 "ribonuclease D" +BW25113_1804__3prime rnd__3prime 0 1880923 1881120 -1 590 0.07575757575757576 198 15 "ribonuclease D" +BW25113_1805 fadD 0 1882318 1884003 -1 2021 0.0634638196915777 1686 107 "acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)" +BW25113_1805__5prime fadD__5prime 0 1884004 1884201 -1 0 0.0 198 0 "acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)" +BW25113_1805__3prime fadD__3prime 0 1882120 1882317 -1 160 0.045454545454545456 198 9 "acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)" +BW25113_1806 yeaY 0 1884208 1884789 -1 973 0.07216494845360824 582 42 "Slp family lipoprotein and RpoE-regulated" +BW25113_1806__5prime yeaY__5prime 0 1884790 1884987 -1 90 0.020202020202020204 198 4 "Slp family lipoprotein and RpoE-regulated" +BW25113_1806__3prime yeaY__3prime 0 1884010 1884207 -1 0 0.0 198 0 "Slp family lipoprotein and RpoE-regulated" +BW25113_1807 tsaB 0 1884829 1885524 -1 73 0.0014367816091954023 696 1 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD" +BW25113_1807__5prime tsaB__5prime 0 1885525 1885722 -1 154 0.045454545454545456 198 9 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD" +BW25113_1807__3prime tsaB__3prime 0 1884631 1884828 -1 304 0.09090909090909091 198 18 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD" +BW25113_1808 yoaA 0 1885582 1887492 -1 2212 0.05023547880690738 1911 96 "putative ATP-dependent helicase and DinG family" +BW25113_1808__5prime yoaA__5prime 0 1887493 1887690 -1 359 0.08585858585858586 198 17 "putative ATP-dependent helicase and DinG family" +BW25113_1808__3prime yoaA__3prime 0 1885384 1885581 -1 10 0.005050505050505051 198 1 "putative ATP-dependent helicase and DinG family" +BW25113_1809 yoaB 0 1887624 1887968 1 4798 0.25507246376811593 345 88 "putative reactive intermediate deaminase" +BW25113_1809__5prime yoaB__5prime 0 1887426 1887623 1 136 0.025252525252525252 198 5 "putative reactive intermediate deaminase" +BW25113_1809__3prime yoaB__3prime 0 1887969 1888166 1 639 0.1414141414141414 198 28 "putative reactive intermediate deaminase" +BW25113_1810 yoaC 0 1888390 1888689 1 2310 0.23333333333333334 300 70 "DUF1889 family protein" +BW25113_1810__5prime yoaC__5prime 0 1888192 1888389 1 1565 0.29292929292929293 198 58 "DUF1889 family protein" +BW25113_1810__3prime yoaC__3prime 0 1888690 1888887 1 658 0.1111111111111111 198 22 "DUF1889 family protein" +BW25113_1811 yoaH 0 1888809 1888988 -1 847 0.13333333333333333 180 24 "UPF0181 family protein" +BW25113_1811__5prime yoaH__5prime 0 1888989 1889186 -1 840 0.15151515151515152 198 30 "UPF0181 family protein" +BW25113_1811__3prime yoaH__3prime 0 1888611 1888808 -1 588 0.1414141414141414 198 28 "UPF0181 family protein" +BW25113_1812 pabB 0 1889062 1890423 1 2179 0.07562408223201175 1362 103 "aminodeoxychorismate synthase and subunit I" +BW25113_1812__5prime pabB__5prime 0 1888864 1889061 1 1115 0.15151515151515152 198 30 "aminodeoxychorismate synthase and subunit I" +BW25113_1812__3prime pabB__3prime 0 1890424 1890621 1 158 0.05555555555555555 198 11 "aminodeoxychorismate synthase and subunit I" +BW25113_1813 nudL 0 1890427 1891005 1 888 0.06044905008635579 579 35 "putative CoA pyrophosphohydrolase and weak 3-phosphohydroxypyruvate phosphatase" +BW25113_1813__5prime nudL__5prime 0 1890229 1890426 1 142 0.06060606060606061 198 12 "putative CoA pyrophosphohydrolase and weak 3-phosphohydroxypyruvate phosphatase" +BW25113_1813__3prime nudL__3prime 0 1891006 1891203 1 442 0.1111111111111111 198 22 "putative CoA pyrophosphohydrolase and weak 3-phosphohydroxypyruvate phosphatase" +BW25113_1814 sdaA 0 1891189 1892553 1 2323 0.08717948717948718 1365 119 "L-serine dehydratase 1" +BW25113_1814__5prime sdaA__5prime 0 1890991 1891188 1 403 0.09595959595959595 198 19 "L-serine dehydratase 1" +BW25113_1814__3prime sdaA__3prime 0 1892554 1892751 1 95 0.025252525252525252 198 5 "L-serine dehydratase 1" +BW25113_1815 yoaD 0 1892684 1894282 1 2081 0.06566604127579738 1599 105 "putative membrane-anchored cyclic-di-GMP phosphodiesterase and regulator of cellulose production" +BW25113_1815__5prime yoaD__5prime 0 1892486 1892683 1 187 0.06060606060606061 198 12 "putative membrane-anchored cyclic-di-GMP phosphodiesterase and regulator of cellulose production" +BW25113_1815__3prime yoaD__3prime 0 1894283 1894480 1 158 0.050505050505050504 198 10 "putative membrane-anchored cyclic-di-GMP phosphodiesterase and regulator of cellulose production" +BW25113_1816 yoaE 0 1894286 1895842 -1 1895 0.04945407835581246 1557 77 "putative membrane protein/conserved protein" +BW25113_1816__5prime yoaE__5prime 0 1895843 1896040 -1 548 0.15151515151515152 198 30 "putative membrane protein/conserved protein" +BW25113_1816__3prime yoaE__3prime 0 1894088 1894285 -1 234 0.0707070707070707 198 14 "putative membrane protein/conserved protein" +BW25113_1817 manX 0 1896305 1897276 1 1420 0.06481481481481481 972 63 "fused mannose-specific PTS enzymes: IIA component/IIB component" +BW25113_1817__5prime manX__5prime 0 1896107 1896304 1 136 0.05555555555555555 198 11 "fused mannose-specific PTS enzymes: IIA component/IIB component" +BW25113_1817__3prime manX__3prime 0 1897277 1897474 1 367 0.09090909090909091 198 18 "fused mannose-specific PTS enzymes: IIA component/IIB component" +BW25113_1818 manY 0 1897339 1898139 1 2016 0.07240948813982521 801 58 "mannose-specific enzyme IIC component of PTS" +BW25113_1818__5prime manY__5prime 0 1897141 1897338 1 381 0.05555555555555555 198 11 "mannose-specific enzyme IIC component of PTS" +BW25113_1818__3prime manY__3prime 0 1898140 1898337 1 690 0.08585858585858586 198 17 "mannose-specific enzyme IIC component of PTS" +BW25113_1819 manZ 0 1898152 1899003 1 1484 0.06690140845070422 852 57 "mannose-specific enzyme IID component of PTS" +BW25113_1819__5prime manZ__5prime 0 1897954 1898151 1 422 0.06060606060606061 198 12 "mannose-specific enzyme IID component of PTS" +BW25113_1819__3prime manZ__3prime 0 1899004 1899201 1 1106 0.20707070707070707 198 41 "mannose-specific enzyme IID component of PTS" +BW25113_1820 yobD 0 1899058 1899516 1 1330 0.1503267973856209 459 69 "UPF0266 family inner membrane protein" +BW25113_1820__5prime yobD__5prime 0 1898860 1899057 1 408 0.09090909090909091 198 18 "UPF0266 family inner membrane protein" +BW25113_1820__3prime yobD__3prime 0 1899517 1899714 1 19 0.010101010101010102 198 2 "UPF0266 family inner membrane protein" +BW25113_1821 mntP 0 1899945 1900511 1 514 0.059964726631393295 567 34 "putative Mn(2+) efflux pump and mntR-regulated" +BW25113_1821__5prime mntP__5prime 0 1899747 1899944 1 811 0.15656565656565657 198 31 "putative Mn(2+) efflux pump and mntR-regulated" +BW25113_1821__3prime mntP__3prime 0 1900512 1900709 1 416 0.06565656565656566 198 13 "putative Mn(2+) efflux pump and mntR-regulated" +BW25113_1822 rlmA 0 1900508 1901317 -1 1520 0.0691358024691358 810 56 "23S rRNA m(1)G745 methyltransferase and SAM-dependent" +BW25113_1822__5prime rlmA__5prime 0 1901318 1901515 -1 82 0.020202020202020204 198 4 "23S rRNA m(1)G745 methyltransferase and SAM-dependent" +BW25113_1822__3prime rlmA__3prime 0 1900310 1900507 -1 156 0.03535353535353535 198 7 "23S rRNA m(1)G745 methyltransferase and SAM-dependent" +BW25113_1823 cspC 0 1901483 1901692 -1 1235 0.20476190476190476 210 43 "stress protein and member of the CspA-family" +BW25113_1823__5prime cspC__5prime 0 1901693 1901890 -1 3227 0.398989898989899 198 79 "stress protein and member of the CspA-family" +BW25113_1823__3prime cspC__3prime 0 1901285 1901482 -1 28 0.010101010101010102 198 2 "stress protein and member of the CspA-family" +BW25113_1824 yobF 0 1901705 1901848 -1 2344 0.4305555555555556 144 62 "DUF2527 family heat-induced protein" +BW25113_1824__5prime yobF__5prime 0 1901849 1902046 -1 1291 0.22727272727272727 198 45 "DUF2527 family heat-induced protein" +BW25113_1824__3prime yobF__3prime 0 1901507 1901704 -1 1218 0.21212121212121213 198 42 "DUF2527 family heat-induced protein" +BW25113_1825 yebO 0 1902518 1902805 -1 1166 0.09722222222222222 288 28 "putative inner membrane protein" +BW25113_1825__5prime yebO__5prime 0 1902806 1903003 -1 452 0.1111111111111111 198 22 "putative inner membrane protein" +BW25113_1825__3prime yebO__3prime 0 1902320 1902517 -1 1026 0.09090909090909091 198 18 "putative inner membrane protein" +BW25113_1826 mgrB 0 1902880 1903023 -1 275 0.06944444444444445 144 10 "regulatory peptide for PhoPQ and feedback inhibition" +BW25113_1826__5prime mgrB__5prime 0 1903024 1903221 -1 485 0.12121212121212122 198 24 "regulatory peptide for PhoPQ and feedback inhibition" +BW25113_1826__3prime mgrB__3prime 0 1902682 1902879 -1 368 0.10101010101010101 198 20 "regulatory peptide for PhoPQ and feedback inhibition" +BW25113_4536 yobH 0 1903182 1903421 1 746 0.15833333333333333 240 38 "uncharacterized protein" +BW25113_4536__5prime yobH__5prime 0 1902984 1903181 1 241 0.07575757575757576 198 15 "uncharacterized protein" +BW25113_4536__3prime yobH__3prime 0 1903422 1903619 1 315 0.1111111111111111 198 22 "uncharacterized protein" +BW25113_1827 kdgR 0 1903565 1904356 -1 1500 0.07828282828282829 792 62 "KDG regulon transcriptional repressor" +BW25113_1827__5prime kdgR__5prime 0 1904357 1904554 -1 29 0.010101010101010102 198 2 "KDG regulon transcriptional repressor" +BW25113_1827__3prime kdgR__3prime 0 1903367 1903564 -1 362 0.12626262626262627 198 25 "KDG regulon transcriptional repressor" +BW25113_1828 yebQ 0 1904533 1905906 1 1423 0.06331877729257641 1374 87 "putative transporter" +BW25113_1828__5prime yebQ__5prime 0 1904335 1904532 1 29 0.010101010101010102 198 2 "putative transporter" +BW25113_1828__3prime yebQ__3prime 0 1905907 1906104 1 252 0.050505050505050504 198 10 "putative transporter" +BW25113_1829 htpX 0 1905952 1906833 -1 759 0.05442176870748299 882 48 "putative endopeptidase" +BW25113_1829__5prime htpX__5prime 0 1906834 1907031 -1 164 0.020202020202020204 198 4 "putative endopeptidase" +BW25113_1829__3prime htpX__3prime 0 1905754 1905951 -1 332 0.08585858585858586 198 17 "putative endopeptidase" +BW25113_1830 prc 0 1907025 1909073 -1 1947 0.04685212298682284 2049 96 "carboxy-terminal protease for penicillin-binding protein 3" +BW25113_1830__5prime prc__5prime 0 1909074 1909271 -1 297 0.045454545454545456 198 9 "carboxy-terminal protease for penicillin-binding protein 3" +BW25113_1830__3prime prc__3prime 0 1906827 1907024 -1 164 0.020202020202020204 198 4 "carboxy-terminal protease for penicillin-binding protein 3" +BW25113_1831 proQ 0 1909093 1909791 -1 590 0.04005722460658083 699 28 "RNA chaperone and putative ProP translation regulator" +BW25113_1831__5prime proQ__5prime 0 1909792 1909989 -1 178 0.03535353535353535 198 7 "RNA chaperone and putative ProP translation regulator" +BW25113_1831__3prime proQ__3prime 0 1908895 1909092 -1 216 0.020202020202020204 198 4 "RNA chaperone and putative ProP translation regulator" +BW25113_1832 msrC 0 1909888 1910385 -1 384 0.05622489959839357 498 28 "free methionine-(R)-sulfoxide reductase" +BW25113_1832__5prime msrC__5prime 0 1910386 1910583 -1 34 0.020202020202020204 198 4 "free methionine-(R)-sulfoxide reductase" +BW25113_1832__3prime msrC__3prime 0 1909690 1909887 -1 137 0.020202020202020204 198 4 "free methionine-(R)-sulfoxide reductase" +BW25113_1833 yebS 0 1910515 1911798 1 950 0.045950155763239874 1284 59 "inner membrane protein" +BW25113_1833__5prime yebS__5prime 0 1910317 1910514 1 54 0.025252525252525252 198 5 "inner membrane protein" +BW25113_1833__3prime yebS__3prime 0 1911799 1911996 1 798 0.1414141414141414 198 28 "inner membrane protein" +BW25113_1834 yebT 0 1911767 1914400 1 3645 0.06454062262718299 2634 170 "MCE domain protein" +BW25113_1834__5prime yebT__5prime 0 1911569 1911766 1 99 0.04040404040404041 198 8 "MCE domain protein" +BW25113_1834__3prime yebT__3prime 0 1914401 1914598 1 205 0.020202020202020204 198 4 "MCE domain protein" +BW25113_1834 yebT 0 1913073 1913358 1 497 0.08041958041958042 286 23 "1913072_1913358" +BW25113_1834__5prime yebT__5prime 0 1912875 1913072 1 312 0.06060606060606061 198 12 "1913072_1913358" +BW25113_1834__3prime yebT__3prime 0 1913359 1913556 1 210 0.06565656565656566 198 13 "1913072_1913358" +BW25113_1835 rsmF 0 1914480 1915919 1 1657 0.058333333333333334 1440 84 "16S rRNA m(5)C1407 methyltransferase and SAM-dependent" +BW25113_1835__5prime rsmF__5prime 0 1914282 1914479 1 207 0.03535353535353535 198 7 "16S rRNA m(5)C1407 methyltransferase and SAM-dependent" +BW25113_1835__3prime rsmF__3prime 0 1915920 1916117 1 165 0.050505050505050504 198 10 "16S rRNA m(5)C1407 methyltransferase and SAM-dependent" +BW25113_1836 yebV 0 1916037 1916273 1 482 0.11392405063291139 237 27 "uncharacterized protein" +BW25113_1836__5prime yebV__5prime 0 1915839 1916036 1 197 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_1836__3prime yebV__3prime 0 1916274 1916471 1 290 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_1837 yebW 0 1916378 1916569 1 353 0.078125 192 15 "uncharacterized protein" +BW25113_1837__5prime yebW__5prime 0 1916180 1916377 1 342 0.08080808080808081 198 16 "uncharacterized protein" +BW25113_1837__3prime yebW__3prime 0 1916570 1916767 1 675 0.13131313131313133 198 26 "uncharacterized protein" +BW25113_1838 pphA 0 1916570 1917226 -1 980 0.0669710806697108 657 44 "serine/threonine-specific protein phosphatase 1" +BW25113_1838__5prime pphA__5prime 0 1917227 1917424 -1 158 0.04040404040404041 198 8 "serine/threonine-specific protein phosphatase 1" +BW25113_1838__3prime pphA__3prime 0 1916372 1916569 -1 353 0.07575757575757576 198 15 "serine/threonine-specific protein phosphatase 1" +BW25113_4432 ryeA 0 1917323 1917571 1 221 0.04819277108433735 249 12 "novel sRNA and function unknown" +BW25113_4432__5prime ryeA__5prime 0 1917125 1917322 1 89 0.025252525252525252 198 5 "novel sRNA and function unknown" +BW25113_4432__3prime ryeA__3prime 0 1917572 1917769 1 38 0.025252525252525252 198 5 "novel sRNA and function unknown" +BW25113_4433 sdsR 0 1917421 1917541 -1 160 0.0743801652892562 121 9 "novel sRNA and function unknown" +BW25113_4433__5prime sdsR__5prime 0 1917542 1917739 -1 38 0.025252525252525252 198 5 "novel sRNA and function unknown" +BW25113_4433__3prime sdsR__3prime 0 1917223 1917420 -1 143 0.03535353535353535 198 7 "novel sRNA and function unknown" +BW25113_1839 yebY 0 1917622 1917963 -1 404 0.06432748538011696 342 22 "DUF2511 family protein" +BW25113_1839__5prime yebY__5prime 0 1917964 1918161 -1 365 0.13636363636363635 198 27 "DUF2511 family protein" +BW25113_1839__3prime yebY__3prime 0 1917424 1917621 -1 145 0.04040404040404041 198 8 "DUF2511 family protein" +BW25113_1840 yebZ 0 1917976 1918848 -1 1005 0.06987399770904926 873 61 "inner membrane protein" +BW25113_1840__5prime yebZ__5prime 0 1918849 1919046 -1 51 0.030303030303030304 198 6 "inner membrane protein" +BW25113_1840__3prime yebZ__3prime 0 1917778 1917975 -1 367 0.08585858585858586 198 17 "inner membrane protein" +BW25113_1841 yobA 0 1918852 1919226 -1 337 0.050666666666666665 375 19 "CopC family protein" +BW25113_1841__5prime yobA__5prime 0 1919227 1919424 -1 230 0.08585858585858586 198 17 "CopC family protein" +BW25113_1841__3prime yobA__3prime 0 1918654 1918851 -1 69 0.030303030303030304 198 6 "CopC family protein" +BW25113_1842 holE 0 1919365 1919595 1 452 0.07792207792207792 231 18 "DNA polymerase III and theta subunit" +BW25113_1842__5prime holE__5prime 0 1919167 1919364 1 333 0.08585858585858586 198 17 "DNA polymerase III and theta subunit" +BW25113_1842__3prime holE__3prime 0 1919596 1919793 1 138 0.04040404040404041 198 8 "DNA polymerase III and theta subunit" +BW25113_1843 yobB 0 1919697 1920353 1 779 0.0578386605783866 657 38 "C-N hydrolase family protein" +BW25113_1843__5prime yobB__5prime 0 1919499 1919696 1 361 0.06060606060606061 198 12 "C-N hydrolase family protein" +BW25113_1843__3prime yobB__3prime 0 1920354 1920551 1 157 0.045454545454545456 198 9 "C-N hydrolase family protein" +BW25113_1844 exoX 0 1920377 1921039 1 836 0.05580693815987934 663 37 "exodeoxyribonuclease 10; DNA exonuclease X" +BW25113_1844__5prime exoX__5prime 0 1920179 1920376 1 230 0.045454545454545456 198 9 "exodeoxyribonuclease 10; DNA exonuclease X" +BW25113_1844__3prime exoX__3prime 0 1921040 1921237 1 621 0.11616161616161616 198 23 "exodeoxyribonuclease 10; DNA exonuclease X" +BW25113_1845 ptrB 0 1921036 1923096 -1 3152 0.06841339155749636 2061 141 "protease II" +BW25113_1845__5prime ptrB__5prime 0 1923097 1923294 -1 183 0.0707070707070707 198 14 "protease II" +BW25113_1845__3prime ptrB__3prime 0 1920838 1921035 -1 93 0.025252525252525252 198 5 "protease II" +BW25113_1846 yebE 0 1923305 1923964 -1 448 0.04090909090909091 660 27 "DUF533 family inner membrane protein" +BW25113_1846__5prime yebE__5prime 0 1923965 1924162 -1 166 0.020202020202020204 198 4 "DUF533 family inner membrane protein" +BW25113_1846__3prime yebE__3prime 0 1923107 1923304 -1 206 0.07575757575757576 198 15 "DUF533 family inner membrane protein" +1924179_1924263 1924179_1924263 0 1924180 1924263 1 374 0.17857142857142858 84 15 "1924179_1924263" +1924179_1924263__5prime 1924179_1924263__5prime 0 1923982 1924179 1 212 0.025252525252525252 198 5 "1924179_1924263" +1924179_1924263__3prime 1924179_1924263__3prime 0 1924264 1924461 1 546 0.08080808080808081 198 16 "1924179_1924263" +BW25113_1847 yebF 0 1924291 1924647 -1 659 0.058823529411764705 357 21 "extracellular Colicin M immunity family protein" +BW25113_1847__5prime yebF__5prime 0 1924648 1924845 -1 163 0.04040404040404041 198 8 "extracellular Colicin M immunity family protein" +BW25113_1847__3prime yebF__3prime 0 1924093 1924290 -1 455 0.08585858585858586 198 17 "extracellular Colicin M immunity family protein" +BW25113_1848 yebG 0 1924714 1925004 -1 246 0.037800687285223365 291 11 "DNA damage-inducible protein regulated by LexA" +BW25113_1848__5prime yebG__5prime 0 1925005 1925202 -1 157 0.06060606060606061 198 12 "DNA damage-inducible protein regulated by LexA" +BW25113_1848__3prime yebG__3prime 0 1924516 1924713 -1 113 0.025252525252525252 198 5 "DNA damage-inducible protein regulated by LexA" +BW25113_1849 purT 0 1925138 1926316 1 1545 0.056827820186598814 1179 67 "phosphoribosylglycinamide formyltransferase 2" +BW25113_1849__5prime purT__5prime 0 1924940 1925137 1 83 0.025252525252525252 198 5 "phosphoribosylglycinamide formyltransferase 2" +BW25113_1849__3prime purT__3prime 0 1926317 1926514 1 602 0.1111111111111111 198 22 "phosphoribosylglycinamide formyltransferase 2" +1926342_1926361 1926342_1926361 0 1926343 1926361 1 0 0.0 19 0 "1926342_1926361" +1926342_1926361__5prime 1926342_1926361__5prime 0 1926145 1926342 1 299 0.050505050505050504 198 10 "1926342_1926361" +1926342_1926361__3prime 1926342_1926361__3prime 0 1926362 1926559 1 623 0.12121212121212122 198 24 "1926342_1926361" +BW25113_1850 eda 0 1926372 1927013 -1 957 0.07009345794392523 642 45 "multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase" +BW25113_1850__5prime eda__5prime 0 1927014 1927211 -1 216 0.09090909090909091 198 18 "multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase" +BW25113_1850__3prime eda__3prime 0 1926174 1926371 -1 414 0.06565656565656566 198 13 "multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase" +BW25113_1851 edd 0 1927050 1928861 -1 1868 0.057947019867549666 1812 105 "6-phosphogluconate dehydratase" +BW25113_1851__5prime edd__5prime 0 1928862 1929059 -1 37 0.005050505050505051 198 1 "6-phosphogluconate dehydratase" +BW25113_1851__3prime edd__3prime 0 1926852 1927049 -1 85 0.03535353535353535 198 7 "6-phosphogluconate dehydratase" +BW25113_1852 zwf 0 1929096 1930571 -1 713 0.03726287262872629 1476 55 "glucose-6-phosphate 1-dehydrogenase" +BW25113_1852__5prime zwf__5prime 0 1930572 1930769 -1 209 0.050505050505050504 198 10 "glucose-6-phosphate 1-dehydrogenase" +BW25113_1852__3prime zwf__3prime 0 1928898 1929095 -1 42 0.010101010101010102 198 2 "glucose-6-phosphate 1-dehydrogenase" +BW25113_1853 yebK 0 1930909 1931778 1 1009 0.04367816091954023 870 38 "putative DNA-binding transcriptional regulator" +BW25113_1853__5prime yebK__5prime 0 1930711 1930908 1 0 0.0 198 0 "putative DNA-binding transcriptional regulator" +BW25113_1853__3prime yebK__3prime 0 1931779 1931976 1 181 0.06060606060606061 198 12 "putative DNA-binding transcriptional regulator" +BW25113_1854 pykA 0 1931906 1933348 1 1638 0.06791406791406791 1443 98 "pyruvate kinase II" +BW25113_1854__5prime pykA__5prime 0 1931708 1931905 1 186 0.06565656565656566 198 13 "pyruvate kinase II" +BW25113_1854__3prime pykA__3prime 0 1933349 1933546 1 12 0.010101010101010102 198 2 "pyruvate kinase II" +1933355_1933385 1933355_1933385 0 1933356 1933385 1 0 0.0 30 0 "1933355_1933385" +1933355_1933385__5prime 1933355_1933385__5prime 0 1933158 1933355 1 257 0.07575757575757576 198 15 "1933355_1933385" +1933355_1933385__3prime 1933355_1933385__3prime 0 1933386 1933583 1 84 0.025252525252525252 198 5 "1933355_1933385" +BW25113_1855 lpxM 0 1933479 1934450 -1 808 0.0360082304526749 972 35 "myristoyl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_1855__5prime lpxM__5prime 0 1934451 1934648 -1 220 0.06060606060606061 198 12 "myristoyl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_1855__3prime lpxM__3prime 0 1933281 1933478 -1 128 0.050505050505050504 198 10 "myristoyl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_1856 mepM 0 1934570 1935892 -1 2557 0.08314436885865457 1323 110 "murein DD-endopeptidase and space-maker hydrolase and septation protein" +BW25113_1856__5prime mepM__5prime 0 1935893 1936090 -1 320 0.09595959595959595 198 19 "murein DD-endopeptidase and space-maker hydrolase and septation protein" +BW25113_1856__3prime mepM__3prime 0 1934372 1934569 -1 128 0.030303030303030304 198 6 "murein DD-endopeptidase and space-maker hydrolase and septation protein" +BW25113_1857 znuA 0 1935908 1936840 -1 854 0.055734190782422297 933 52 "zinc transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_1857__5prime znuA__5prime 0 1936841 1937038 -1 10 0.010101010101010102 198 2 "zinc transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_1857__3prime znuA__3prime 0 1935710 1935907 -1 233 0.050505050505050504 198 10 "zinc transporter subunit: periplasmic-binding component of ABC superfamily" +BW25113_1858 znuC 0 1936919 1937674 1 735 0.0582010582010582 756 44 "zinc transporter subunit: ATP-binding component of ABC superfamily" +BW25113_1858__5prime znuC__5prime 0 1936721 1936918 1 110 0.020202020202020204 198 4 "zinc transporter subunit: ATP-binding component of ABC superfamily" +BW25113_1858__3prime znuC__3prime 0 1937675 1937872 1 342 0.09090909090909091 198 18 "zinc transporter subunit: ATP-binding component of ABC superfamily" +BW25113_1859 znuB 0 1937671 1938456 1 758 0.047073791348600506 786 37 "zinc transporter subunit: membrane component of ABC superfamily" +BW25113_1859__5prime znuB__5prime 0 1937473 1937670 1 104 0.045454545454545456 198 9 "zinc transporter subunit: membrane component of ABC superfamily" +BW25113_1859__3prime znuB__3prime 0 1938457 1938654 1 381 0.13636363636363635 198 27 "zinc transporter subunit: membrane component of ABC superfamily" +1938475_1938602 1938475_1938602 0 1938476 1938602 1 361 0.1968503937007874 127 25 "1938475_1938602" +1938475_1938602__5prime 1938475_1938602__5prime 0 1938278 1938475 1 179 0.04040404040404041 198 8 "1938475_1938602" +1938475_1938602__3prime 1938475_1938602__3prime 0 1938603 1938800 1 186 0.03535353535353535 198 7 "1938475_1938602" +BW25113_1860 ruvB 0 1938603 1939613 -1 619 0.02967359050445104 1011 30 "ATP-dependent DNA helicase and component of RuvABC resolvasome" +BW25113_1860__5prime ruvB__5prime 0 1939614 1939811 -1 136 0.025252525252525252 198 5 "ATP-dependent DNA helicase and component of RuvABC resolvasome" +BW25113_1860__3prime ruvB__3prime 0 1938405 1938602 -1 401 0.1414141414141414 198 28 "ATP-dependent DNA helicase and component of RuvABC resolvasome" +BW25113_1861 ruvA 0 1939622 1940233 -1 384 0.042483660130718956 612 26 "component of RuvABC resolvasome and regulatory subunit" +BW25113_1861__5prime ruvA__5prime 0 1940234 1940431 -1 117 0.03535353535353535 198 7 "component of RuvABC resolvasome and regulatory subunit" +BW25113_1861__3prime ruvA__3prime 0 1939424 1939621 -1 0 0.0 198 0 "component of RuvABC resolvasome and regulatory subunit" +BW25113_4677 yobI 0 1940372 1940437 -1 14 0.015151515151515152 66 1 "uncharacterized protein" +BW25113_4677__5prime yobI__5prime 0 1940438 1940635 -1 280 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_4677__3prime yobI__3prime 0 1940174 1940371 -1 147 0.05555555555555555 198 11 "uncharacterized protein" +BW25113_1862 yebB 0 1940508 1941110 1 1955 0.10945273631840796 603 66 "DUF830 family protein" +BW25113_1862__5prime yebB__5prime 0 1940310 1940507 1 60 0.020202020202020204 198 4 "DUF830 family protein" +BW25113_1862__3prime yebB__3prime 0 1941111 1941308 1 444 0.0707070707070707 198 14 "DUF830 family protein" +BW25113_1863 ruvC 0 1941112 1941633 -1 546 0.028735632183908046 522 15 "component of RuvABC resolvasome and endonuclease" +BW25113_1863__5prime ruvC__5prime 0 1941634 1941831 -1 168 0.0707070707070707 198 14 "component of RuvABC resolvasome and endonuclease" +BW25113_1863__3prime ruvC__3prime 0 1940914 1941111 -1 413 0.09090909090909091 198 18 "component of RuvABC resolvasome and endonuclease" +BW25113_1864 yebC 0 1941668 1942408 -1 700 0.06882591093117409 741 51 "UPF0082 family protein" +BW25113_1864__5prime yebC__5prime 0 1942409 1942606 -1 487 0.10101010101010101 198 20 "UPF0082 family protein" +BW25113_1864__3prime yebC__3prime 0 1941470 1941667 -1 77 0.025252525252525252 198 5 "UPF0082 family protein" +BW25113_1865 nudB 0 1942437 1942889 -1 669 0.07947019867549669 453 36 "dihydroneopterin triphosphate pyrophosphatase" +BW25113_1865__5prime nudB__5prime 0 1942890 1943087 -1 192 0.025252525252525252 198 5 "dihydroneopterin triphosphate pyrophosphatase" +BW25113_1865__3prime nudB__3prime 0 1942239 1942436 -1 370 0.12626262626262627 198 25 "dihydroneopterin triphosphate pyrophosphatase" +BW25113_1866 aspS 0 1943007 1944779 -1 0 0.0 1773 0 "aspartyl-tRNA synthetase" +BW25113_1866__5prime aspS__5prime 0 1944780 1944977 -1 88 0.030303030303030304 198 6 "aspartyl-tRNA synthetase" +BW25113_1866__3prime aspS__3prime 0 1942809 1943006 -1 251 0.06565656565656566 198 13 "aspartyl-tRNA synthetase" +BW25113_1867 yecD 0 1945089 1945655 1 865 0.07583774250440917 567 43 "isochorismatase family protein" +BW25113_1867__5prime yecD__5prime 0 1944891 1945088 1 66 0.015151515151515152 198 3 "isochorismatase family protein" +BW25113_1867__3prime yecD__3prime 0 1945656 1945853 1 769 0.1414141414141414 198 28 "isochorismatase family protein" +BW25113_1868 yecE 0 1945652 1946470 1 2404 0.0989010989010989 819 81 "UPF0759 family protein" +BW25113_1868__5prime yecE__5prime 0 1945454 1945651 1 420 0.07575757575757576 198 15 "UPF0759 family protein" +BW25113_1868__3prime yecE__3prime 0 1946471 1946668 1 265 0.06060606060606061 198 12 "UPF0759 family protein" +BW25113_1869 yecN 0 1946523 1946918 1 346 0.07323232323232323 396 29 "MAPEG family inner membrane protein" +BW25113_1869__5prime yecN__5prime 0 1946325 1946522 1 792 0.12626262626262627 198 25 "MAPEG family inner membrane protein" +BW25113_1869__3prime yecN__3prime 0 1946919 1947116 1 130 0.0707070707070707 198 14 "MAPEG family inner membrane protein" +BW25113_1870 cmoA 0 1946959 1947702 1 953 0.053763440860215055 744 40 "carboxy-SAM synthase" +BW25113_1870__5prime cmoA__5prime 0 1946761 1946958 1 96 0.06060606060606061 198 12 "carboxy-SAM synthase" +BW25113_1870__3prime cmoA__3prime 0 1947703 1947900 1 93 0.025252525252525252 198 5 "carboxy-SAM synthase" +BW25113_1871 cmoB 0 1947699 1948670 1 1110 0.06790123456790123 972 66 "tRNA (cmo5U34)-carboxymethyltransferase and carboxy-SAM-dependent" +BW25113_1871__5prime cmoB__5prime 0 1947501 1947698 1 497 0.06565656565656566 198 13 "tRNA (cmo5U34)-carboxymethyltransferase and carboxy-SAM-dependent" +BW25113_1871__3prime cmoB__3prime 0 1948671 1948868 1 494 0.15151515151515152 198 30 "tRNA (cmo5U34)-carboxymethyltransferase and carboxy-SAM-dependent" +1948685_1948783 1948685_1948783 0 1948686 1948783 1 277 0.17346938775510204 98 17 "1948685_1948783" +1948685_1948783__5prime 1948685_1948783__5prime 0 1948488 1948685 1 175 0.06060606060606061 198 12 "1948685_1948783" +1948685_1948783__3prime 1948685_1948783__3prime 0 1948784 1948981 1 192 0.05555555555555555 198 11 "1948685_1948783" +BW25113_1872 torZ 0 1948835 1951264 -1 3686 0.06378600823045268 2430 155 "trimethylamine N-oxide reductase system III and catalytic subunit" +BW25113_1872__5prime torZ__5prime 0 1951265 1951462 -1 309 0.13131313131313133 198 26 "trimethylamine N-oxide reductase system III and catalytic subunit" +BW25113_1872__3prime torZ__3prime 0 1948637 1948834 -1 407 0.13131313131313133 198 26 "trimethylamine N-oxide reductase system III and catalytic subunit" +BW25113_1873 torY 0 1951289 1952389 -1 3159 0.14259763851044505 1101 157 "TMAO reductase III (TorYZ) and cytochrome c-type subunit" +BW25113_1873__5prime torY__5prime 0 1952390 1952587 -1 62 0.030303030303030304 198 6 "TMAO reductase III (TorYZ) and cytochrome c-type subunit" +BW25113_1873__3prime torY__3prime 0 1951091 1951288 -1 284 0.09595959595959595 198 19 "TMAO reductase III (TorYZ) and cytochrome c-type subunit" +1952006_1953598 1952006_1953598 0 1952007 1953598 1 3445 0.08479899497487438 1592 135 "1952006_1953598" +1952006_1953598__5prime 1952006_1953598__5prime 0 1951809 1952006 1 735 0.1717171717171717 198 34 "1952006_1953598" +1952006_1953598__3prime 1952006_1953598__3prime 0 1953599 1953796 1 112 0.030303030303030304 198 6 "1952006_1953598" +BW25113_1874 cutC 0 1952777 1953523 -1 812 0.04685408299866131 747 35 "copper homeostasis protein" +BW25113_1874__5prime cutC__5prime 0 1953524 1953721 -1 203 0.04040404040404041 198 8 "copper homeostasis protein" +BW25113_1874__3prime cutC__3prime 0 1952579 1952776 -1 933 0.13131313131313133 198 26 "copper homeostasis protein" +BW25113_1875 yecM 0 1953537 1954103 -1 752 0.04585537918871252 567 26 "putative metal-binding enzyme" +BW25113_1875__5prime yecM__5prime 0 1954104 1954301 -1 471 0.0707070707070707 198 14 "putative metal-binding enzyme" +BW25113_1875__3prime yecM__3prime 0 1953339 1953536 -1 370 0.08585858585858586 198 17 "putative metal-binding enzyme" +BW25113_1876 argS 0 1954319 1956052 1 0 0.0 1734 0 "arginyl-tRNA synthetase" +BW25113_1876__5prime argS__5prime 0 1954121 1954318 1 438 0.06565656565656566 198 13 "arginyl-tRNA synthetase" +BW25113_1876__3prime argS__3prime 0 1956053 1956250 1 901 0.21212121212121213 198 42 "arginyl-tRNA synthetase" +BW25113_1877 yecT 0 1956229 1956717 1 3810 0.2167689161554192 489 106 "uncharacterized protein" +BW25113_1877__5prime yecT__5prime 0 1956031 1956228 1 889 0.20707070707070707 198 41 "uncharacterized protein" +BW25113_1877__3prime yecT__3prime 0 1956718 1956915 1 634 0.12626262626262627 198 25 "uncharacterized protein" +BW25113_1878 flhE 0 1956837 1957229 -1 1266 0.12213740458015267 393 48 "proton seal during flagellar secretion" +BW25113_1878__5prime flhE__5prime 0 1957230 1957427 -1 409 0.09090909090909091 198 18 "proton seal during flagellar secretion" +BW25113_1878__3prime flhE__3prime 0 1956639 1956836 -1 1123 0.1717171717171717 198 34 "proton seal during flagellar secretion" +BW25113_1879 flhA 0 1957229 1959307 -1 2902 0.07263107263107263 2079 151 "putative flagellar export pore protein" +BW25113_1879__5prime flhA__5prime 0 1959308 1959505 -1 237 0.06565656565656566 198 13 "putative flagellar export pore protein" +BW25113_1879__3prime flhA__3prime 0 1957031 1957228 -1 476 0.1111111111111111 198 22 "putative flagellar export pore protein" +BW25113_1880 flhB 0 1959300 1960448 -1 1674 0.05918189730200174 1149 68 "flagellin export apparatus and substrate specificity protein" +BW25113_1880__5prime flhB__5prime 0 1960449 1960646 -1 193 0.07575757575757576 198 15 "flagellin export apparatus and substrate specificity protein" +BW25113_1880__3prime flhB__3prime 0 1959102 1959299 -1 101 0.020202020202020204 198 4 "flagellin export apparatus and substrate specificity protein" +1960578_1960641 1960578_1960641 0 1960579 1960641 1 68 0.09523809523809523 63 6 "1960578_1960641" +1960578_1960641__5prime 1960578_1960641__5prime 0 1960381 1960578 1 106 0.04040404040404041 198 8 "1960578_1960641" +1960578_1960641__3prime 1960578_1960641__3prime 0 1960642 1960839 1 278 0.08585858585858586 198 17 "1960578_1960641" +BW25113_1881 cheZ 0 1960650 1961294 -1 1571 0.08992248062015504 645 58 "chemotaxis regulator and protein phosphatase for CheY" +BW25113_1881__5prime cheZ__5prime 0 1961295 1961492 -1 298 0.03535353535353535 198 7 "chemotaxis regulator and protein phosphatase for CheY" +BW25113_1881__3prime cheZ__3prime 0 1960452 1960649 -1 193 0.07575757575757576 198 15 "chemotaxis regulator and protein phosphatase for CheY" +BW25113_1882 cheY 0 1961305 1961694 -1 455 0.04358974358974359 390 17 "chemotaxis regulator transmitting signal to flagellar motor component" +BW25113_1882__5prime cheY__5prime 0 1961695 1961892 -1 105 0.04040404040404041 198 8 "chemotaxis regulator transmitting signal to flagellar motor component" +BW25113_1882__3prime cheY__3prime 0 1961107 1961304 -1 984 0.13131313131313133 198 26 "chemotaxis regulator transmitting signal to flagellar motor component" +BW25113_1883 cheB 0 1961709 1962758 -1 883 0.05142857142857143 1050 54 "fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA" +BW25113_1883__5prime cheB__5prime 0 1962759 1962956 -1 180 0.03535353535353535 198 7 "fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA" +BW25113_1883__3prime cheB__3prime 0 1961511 1961708 -1 68 0.025252525252525252 198 5 "fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA" +BW25113_1884 cheR 0 1962761 1963621 -1 567 0.0429732868757259 861 37 "chemotaxis regulator and protein-glutamate methyltransferase" +BW25113_1884__5prime cheR__5prime 0 1963622 1963819 -1 90 0.06060606060606061 198 12 "chemotaxis regulator and protein-glutamate methyltransferase" +BW25113_1884__3prime cheR__3prime 0 1962563 1962760 -1 93 0.015151515151515152 198 3 "chemotaxis regulator and protein-glutamate methyltransferase" +BW25113_1885 tap 0 1963640 1965241 -1 1838 0.05930087390761548 1602 95 "methyl-accepting protein IV" +BW25113_1885__5prime tap__5prime 0 1965242 1965439 -1 259 0.050505050505050504 198 10 "methyl-accepting protein IV" +BW25113_1885__3prime tap__3prime 0 1963442 1963639 -1 107 0.050505050505050504 198 10 "methyl-accepting protein IV" +BW25113_1886 tar 0 1965287 1966948 -1 3275 0.09265944645006016 1662 154 "methyl-accepting chemotaxis protein II" +BW25113_1886__5prime tar__5prime 0 1966949 1967146 -1 229 0.05555555555555555 198 11 "methyl-accepting chemotaxis protein II" +BW25113_1886__3prime tar__3prime 0 1965089 1965286 -1 175 0.08080808080808081 198 16 "methyl-accepting chemotaxis protein II" +BW25113_1887 cheW 0 1967093 1967596 -1 613 0.06944444444444445 504 35 "purine-binding chemotaxis protein" +BW25113_1887__5prime cheW__5prime 0 1967597 1967794 -1 10 0.010101010101010102 198 2 "purine-binding chemotaxis protein" +BW25113_1887__3prime cheW__3prime 0 1966895 1967092 -1 772 0.10101010101010101 198 20 "purine-binding chemotaxis protein" +BW25113_1888 cheA 0 1967617 1969581 -1 2061 0.04834605597964377 1965 95 "fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein" +BW25113_1888__5prime cheA__5prime 0 1969582 1969779 -1 129 0.045454545454545456 198 9 "fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein" +BW25113_1888__3prime cheA__3prime 0 1967419 1967616 -1 57 0.025252525252525252 198 5 "fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein" +BW25113_1889 motB 0 1969586 1970512 -1 1026 0.06040992448759439 927 56 "protein that enables flagellar motor rotation" +BW25113_1889__5prime motB__5prime 0 1970513 1970710 -1 93 0.020202020202020204 198 4 "protein that enables flagellar motor rotation" +BW25113_1889__3prime motB__3prime 0 1969388 1969585 -1 177 0.04040404040404041 198 8 "protein that enables flagellar motor rotation" +BW25113_1890 motA 0 1970509 1971396 -1 688 0.030405405405405407 888 27 "proton conductor component of flagella motor" +BW25113_1890__5prime motA__5prime 0 1971397 1971594 -1 284 0.06565656565656566 198 13 "proton conductor component of flagella motor" +BW25113_1890__3prime motA__3prime 0 1970311 1970508 -1 11 0.010101010101010102 198 2 "proton conductor component of flagella motor" +BW25113_1891 flhC 0 1971523 1972101 -1 823 0.07772020725388601 579 45 "flagellar class II regulon transcriptional activator and with FlhD" +BW25113_1891__5prime flhC__5prime 0 1972102 1972299 -1 572 0.15151515151515152 198 30 "flagellar class II regulon transcriptional activator and with FlhD" +BW25113_1891__3prime flhC__3prime 0 1971325 1971522 -1 120 0.04040404040404041 198 8 "flagellar class II regulon transcriptional activator and with FlhD" +BW25113_1892 flhD 0 1972104 1972454 -1 1513 0.18518518518518517 351 65 "flagellar class II regulon transcriptional activator and with FlhC" +BW25113_1892__5prime flhD__5prime 0 1972455 1972652 -1 295 0.09090909090909091 198 18 "flagellar class II regulon transcriptional activator and with FlhC" +BW25113_1892__3prime flhD__3prime 0 1971906 1972103 -1 276 0.0707070707070707 198 14 "flagellar class II regulon transcriptional activator and with FlhC" +BW25113_1895 uspC 0 1973234 1973662 1 1565 0.17249417249417248 429 74 "universal stress protein" +BW25113_1895__5prime uspC__5prime 0 1973036 1973233 1 584 0.10606060606060606 198 21 "universal stress protein" +BW25113_1895__3prime uspC__3prime 0 1973663 1973860 1 729 0.1414141414141414 198 28 "universal stress protein" +BW25113_1896 otsA 0 1973669 1975093 -1 3838 0.09754385964912281 1425 139 "trehalose-6-phosphate synthase" +BW25113_1896__5prime otsA__5prime 0 1975094 1975291 -1 298 0.07575757575757576 198 15 "trehalose-6-phosphate synthase" +BW25113_1896__3prime otsA__3prime 0 1973471 1973668 -1 566 0.13636363636363635 198 27 "trehalose-6-phosphate synthase" +BW25113_1897 otsB 0 1975068 1975868 -1 1211 0.07740324594257178 801 62 "trehalose-6-phosphate phosphatase and biosynthetic" +BW25113_1897__5prime otsB__5prime 0 1975869 1976066 -1 391 0.0707070707070707 198 14 "trehalose-6-phosphate phosphatase and biosynthetic" +BW25113_1897__3prime otsB__3prime 0 1974870 1975067 -1 249 0.050505050505050504 198 10 "trehalose-6-phosphate phosphatase and biosynthetic" +BW25113_4460 araH 0 1976035 1977021 -1 724 0.034447821681864235 987 34 "fused L-arabinose transporter subunits of ABC superfamily: membrane components" +BW25113_4460__5prime araH__5prime 0 1977022 1977219 -1 255 0.09090909090909091 198 18 "fused L-arabinose transporter subunits of ABC superfamily: membrane components" +BW25113_4460__3prime araH__3prime 0 1975837 1976034 -1 433 0.09090909090909091 198 18 "fused L-arabinose transporter subunits of ABC superfamily: membrane components" +BW25113_1900 araG 0 1977036 1978550 -1 1694 0.058085808580858087 1515 88 "fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_1900__5prime araG__5prime 0 1978551 1978748 -1 262 0.10101010101010101 198 20 "fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_1900__3prime araG__3prime 0 1976838 1977035 -1 221 0.06565656565656566 198 13 "fused L-arabinose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_1901 araF 0 1978620 1979609 -1 1430 0.07474747474747474 990 74 "L-arabinose transporter subunit" +BW25113_1901__5prime araF__5prime 0 1979610 1979807 -1 240 0.08080808080808081 198 16 "L-arabinose transporter subunit" +BW25113_1901__3prime araF__3prime 0 1978422 1978619 -1 554 0.1414141414141414 198 28 "L-arabinose transporter subunit" +BW25113_1902 ftnB 0 1980406 1980909 1 1767 0.1388888888888889 504 70 "ferritin B and putative ferrous iron reservoir" +BW25113_1902__5prime ftnB__5prime 0 1980208 1980405 1 557 0.09090909090909091 198 18 "ferritin B and putative ferrous iron reservoir" +BW25113_1902__3prime ftnB__3prime 0 1980910 1981107 1 170 0.03535353535353535 198 7 "ferritin B and putative ferrous iron reservoir" +BW25113_4537 yecJ 0 1980988 1981239 -1 232 0.051587301587301584 252 13 "uncharacterized protein" +BW25113_4537__5prime yecJ__5prime 0 1981240 1981437 -1 51 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_4537__3prime yecJ__3prime 0 1980790 1980987 -1 524 0.10606060606060606 198 21 "uncharacterized protein" +BW25113_4663 azuC 0 1981354 1981440 -1 0 0.0 87 0 "acid-inducible small membrane-associated protein" +BW25113_4663__5prime azuC__5prime 0 1981441 1981638 -1 189 0.04040404040404041 198 8 "acid-inducible small membrane-associated protein" +BW25113_4663__3prime azuC__3prime 0 1981156 1981353 -1 186 0.07575757575757576 198 15 "acid-inducible small membrane-associated protein" +BW25113_1904 yecR 0 1981703 1982026 1 999 0.16666666666666666 324 54 "lipoprotein and function unknown" +BW25113_1904__5prime yecR__5prime 0 1981505 1981702 1 688 0.12626262626262627 198 25 "lipoprotein and function unknown" +BW25113_1904__3prime yecR__3prime 0 1982027 1982224 1 235 0.050505050505050504 198 10 "lipoprotein and function unknown" +BW25113_1905 ftnA 0 1982197 1982694 1 4149 0.25903614457831325 498 129 "ferritin iron storage protein (cytoplasmic)" +BW25113_1905__5prime ftnA__5prime 0 1981999 1982196 1 132 0.045454545454545456 198 9 "ferritin iron storage protein (cytoplasmic)" +BW25113_1905__3prime ftnA__3prime 0 1982695 1982892 1 94 0.05555555555555555 198 11 "ferritin iron storage protein (cytoplasmic)" +BW25113_1906 yecH 0 1982732 1982971 -1 196 0.041666666666666664 240 10 "DUF2492 family protein" +BW25113_1906__5prime yecH__5prime 0 1982972 1983169 -1 292 0.04040404040404041 198 8 "DUF2492 family protein" +BW25113_1906__3prime yecH__3prime 0 1982534 1982731 -1 909 0.18686868686868688 198 37 "DUF2492 family protein" +BW25113_1907 tyrP 0 1983162 1984373 1 2104 0.06188118811881188 1212 75 "tyrosine transporter" +BW25113_1907__5prime tyrP__5prime 0 1982964 1983161 1 292 0.04040404040404041 198 8 "tyrosine transporter" +BW25113_1907__3prime tyrP__3prime 0 1984374 1984571 1 146 0.03535353535353535 198 7 "tyrosine transporter" +BW25113_1908 yecA 0 1984435 1985100 -1 714 0.04504504504504504 666 30 "UPF0149 family protein" +BW25113_1908__5prime yecA__5prime 0 1985101 1985298 -1 207 0.05555555555555555 198 11 "UPF0149 family protein" +BW25113_1908__3prime yecA__3prime 0 1984237 1984434 -1 359 0.05555555555555555 198 11 "UPF0149 family protein" +BW25113_1909 leuZ 0 1985296 1985382 -1 0 0.0 87 0 "tRNA-Leu" +BW25113_1909__5prime leuZ__5prime 0 1985383 1985580 -1 106 0.025252525252525252 198 5 "tRNA-Leu" +BW25113_1909__3prime leuZ__3prime 0 1985098 1985295 -1 207 0.05555555555555555 198 11 "tRNA-Leu" +BW25113_1910 cysT 0 1985395 1985468 -1 0 0.0 74 0 "tRNA-Cys" +BW25113_1910__5prime cysT__5prime 0 1985469 1985666 -1 126 0.03535353535353535 198 7 "tRNA-Cys" +BW25113_1910__3prime cysT__3prime 0 1985197 1985394 -1 86 0.030303030303030304 198 6 "tRNA-Cys" +BW25113_1911 glyW 0 1985523 1985598 -1 126 0.09210526315789473 76 7 "tRNA-Gly" +BW25113_1911__5prime glyW__5prime 0 1985599 1985796 -1 0 0.0 198 0 "tRNA-Gly" +BW25113_1911__3prime glyW__3prime 0 1985325 1985522 -1 0 0.0 198 0 "tRNA-Gly" +BW25113_1912 pgsA 0 1985750 1986298 -1 0 0.0 549 0 "phosphatidylglycerophosphate synthetase" +BW25113_1912__5prime pgsA__5prime 0 1986299 1986496 -1 84 0.025252525252525252 198 5 "phosphatidylglycerophosphate synthetase" +BW25113_1912__3prime pgsA__3prime 0 1985552 1985749 -1 126 0.03535353535353535 198 7 "phosphatidylglycerophosphate synthetase" +BW25113_1913 uvrC 0 1986355 1988187 -1 1825 0.045280960174577195 1833 83 "excinuclease UvrABC and endonuclease subunit" +BW25113_1913__5prime uvrC__5prime 0 1988188 1988385 -1 326 0.08585858585858586 198 17 "excinuclease UvrABC and endonuclease subunit" +BW25113_1913__3prime uvrC__3prime 0 1986157 1986354 -1 0 0.0 198 0 "excinuclease UvrABC and endonuclease subunit" +BW25113_1914 uvrY 0 1988184 1988840 -1 1501 0.1141552511415525 657 75 "response regulator in two-component regulatory system with BarA" +BW25113_1914__5prime uvrY__5prime 0 1988841 1989038 -1 1216 0.19696969696969696 198 39 "response regulator in two-component regulatory system with BarA" +BW25113_1914__3prime uvrY__3prime 0 1987986 1988183 -1 77 0.030303030303030304 198 6 "response regulator in two-component regulatory system with BarA" +BW25113_1915 yecF 0 1989299 1989523 1 946 0.19111111111111112 225 43 "DUF2594 family protein" +BW25113_1915__5prime yecF__5prime 0 1989101 1989298 1 303 0.050505050505050504 198 10 "DUF2594 family protein" +BW25113_1915__3prime yecF__3prime 0 1989524 1989721 1 985 0.1919191919191919 198 38 "DUF2594 family protein" +BW25113_1916 sdiA 0 1989591 1990313 -1 3722 0.17289073305670816 723 125 "quorum-sensing transcriptional activator" +BW25113_1916__5prime sdiA__5prime 0 1990314 1990511 -1 43 0.025252525252525252 198 5 "quorum-sensing transcriptional activator" +BW25113_1916__3prime sdiA__3prime 0 1989393 1989590 -1 744 0.16161616161616163 198 32 "quorum-sensing transcriptional activator" +BW25113_1917 yecC 0 1990543 1991295 -1 2136 0.10624169986719788 753 80 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_1917__5prime yecC__5prime 0 1991296 1991493 -1 572 0.10606060606060606 198 21 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_1917__3prime yecC__3prime 0 1990345 1990542 -1 0 0.0 198 0 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_1918 yecS 0 1991292 1991960 -1 1343 0.09118086696562033 669 61 "ABC family putative inner membrane permease" +BW25113_1918__5prime yecS__5prime 0 1991961 1992158 -1 263 0.08585858585858586 198 17 "ABC family putative inner membrane permease" +BW25113_1918__3prime yecS__3prime 0 1991094 1991291 -1 858 0.12121212121212122 198 24 "ABC family putative inner membrane permease" +BW25113_1919 dcyD 0 1991975 1992961 -1 1219 0.0668693009118541 987 66 "D-cysteine desulfhydrase and PLP-dependent" +BW25113_1919__5prime dcyD__5prime 0 1992962 1993159 -1 442 0.08080808080808081 198 16 "D-cysteine desulfhydrase and PLP-dependent" +BW25113_1919__3prime dcyD__3prime 0 1991777 1991974 -1 387 0.08585858585858586 198 17 "D-cysteine desulfhydrase and PLP-dependent" +BW25113_1920 fliY 0 1993066 1993866 -1 1075 0.07240948813982521 801 58 "cystine transporter subunit" +BW25113_1920__5prime fliY__5prime 0 1993867 1994064 -1 42 0.015151515151515152 198 3 "cystine transporter subunit" +BW25113_1920__3prime fliY__3prime 0 1992868 1993065 -1 357 0.06565656565656566 198 13 "cystine transporter subunit" +BW25113_1921 fliZ 0 1993954 1994505 -1 584 0.057971014492753624 552 32 "RpoS antagonist; putative regulator of FliA activity" +BW25113_1921__5prime fliZ__5prime 0 1994506 1994703 -1 570 0.12121212121212122 198 24 "RpoS antagonist; putative regulator of FliA activity" +BW25113_1921__3prime fliZ__3prime 0 1993756 1993953 -1 172 0.050505050505050504 198 10 "RpoS antagonist; putative regulator of FliA activity" +BW25113_1922 fliA 0 1994551 1995270 -1 1519 0.10416666666666667 720 75 "RNA polymerase and sigma 28 (sigma F) factor" +BW25113_1922__5prime fliA__5prime 0 1995271 1995468 -1 10 0.005050505050505051 198 1 "RNA polymerase and sigma 28 (sigma F) factor" +BW25113_1922__3prime fliA__3prime 0 1994353 1994550 -1 235 0.045454545454545456 198 9 "RNA polymerase and sigma 28 (sigma F) factor" +1995448_1995547 1995448_1995547 0 1995449 1995547 1 17 0.030303030303030304 99 3 "1995448_1995547" +1995448_1995547__5prime 1995448_1995547__5prime 0 1995251 1995448 1 35 0.015151515151515152 198 3 "1995448_1995547" +1995448_1995547__3prime 1995448_1995547__3prime 0 1995548 1995745 1 475 0.09090909090909091 198 18 "1995448_1995547" +BW25113_1923 fliC 0 1995591 1997087 -1 4495 0.12358049432197729 1497 185 "flagellar filament structural protein (flagellin)" +BW25113_1923__5prime fliC__5prime 0 1997088 1997285 -1 658 0.12121212121212122 198 24 "flagellar filament structural protein (flagellin)" +BW25113_1923__3prime fliC__3prime 0 1995393 1995590 -1 228 0.050505050505050504 198 10 "flagellar filament structural protein (flagellin)" +BW25113_1924 fliD 0 1997353 1998759 1 2380 0.08599857853589196 1407 121 "flagellar filament capping protein" +BW25113_1924__5prime fliD__5prime 0 1997155 1997352 1 446 0.06565656565656566 198 13 "flagellar filament capping protein" +BW25113_1924__3prime fliD__3prime 0 1998760 1998957 1 732 0.15656565656565657 198 31 "flagellar filament capping protein" +BW25113_1925 fliS 0 1998784 1999194 1 770 0.09002433090024331 411 37 "flagellar protein potentiates polymerization" +BW25113_1925__5prime fliS__5prime 0 1998586 1998783 1 278 0.045454545454545456 198 9 "flagellar protein potentiates polymerization" +BW25113_1925__3prime fliS__3prime 0 1999195 1999392 1 258 0.09595959595959595 198 19 "flagellar protein potentiates polymerization" +BW25113_1926 fliT 0 1999194 1999559 1 391 0.07377049180327869 366 27 "putative flagellar synthesis and assembly chaperone" +BW25113_1926__5prime fliT__5prime 0 1998996 1999193 1 226 0.050505050505050504 198 10 "putative flagellar synthesis and assembly chaperone" +BW25113_1926__3prime fliT__3prime 0 1999560 1999757 1 813 0.1111111111111111 198 22 "putative flagellar synthesis and assembly chaperone" +BW25113_1927 amyA 0 1999637 2001124 1 1749 0.06384408602150538 1488 95 "cytoplasmic alpha-amylase" +BW25113_1927__5prime amyA__5prime 0 1999439 1999636 1 490 0.08080808080808081 198 16 "cytoplasmic alpha-amylase" +BW25113_1927__3prime amyA__3prime 0 2001125 2001322 1 402 0.16161616161616163 198 32 "cytoplasmic alpha-amylase" +BW25113_1928 yedD 0 2001158 2001571 -1 675 0.10869565217391304 414 45 "lipoprotein" +BW25113_1928__5prime yedD__5prime 0 2001572 2001769 -1 135 0.03535353535353535 198 7 "lipoprotein" +BW25113_1928__3prime yedD__3prime 0 2000960 2001157 -1 14 0.010101010101010102 198 2 "lipoprotein" +BW25113_1929 yedE 0 2001758 2002963 1 1540 0.07048092868988391 1206 85 "UPF0394 family sulfur transport domain-containing inner membrane protein" +BW25113_1929__5prime yedE__5prime 0 2001560 2001757 1 135 0.03535353535353535 198 7 "UPF0394 family sulfur transport domain-containing inner membrane protein" +BW25113_1929__3prime yedE__3prime 0 2002964 2003161 1 909 0.17676767676767677 198 35 "UPF0394 family sulfur transport domain-containing inner membrane protein" +BW25113_1930 yedF 0 2002960 2003193 1 909 0.14957264957264957 234 35 "putative TusA family sulfurtransferase" +BW25113_1930__5prime yedF__5prime 0 2002762 2002959 1 388 0.1111111111111111 198 22 "putative TusA family sulfurtransferase" +BW25113_1930__3prime yedF__3prime 0 2003194 2003391 1 754 0.13636363636363635 198 27 "putative TusA family sulfurtransferase" +BW25113_1931 yedK 0 2003302 2003970 1 799 0.061285500747384154 669 41 "DUF159 family protein" +BW25113_1931__5prime yedK__5prime 0 2003104 2003301 1 1017 0.1717171717171717 198 34 "DUF159 family protein" +BW25113_1931__3prime yedK__3prime 0 2003971 2004168 1 1033 0.14646464646464646 198 29 "DUF159 family protein" +BW25113_1932 yedL 0 2004081 2004560 1 3523 0.21666666666666667 480 104 "putative acyl transferase" +BW25113_1932__5prime yedL__5prime 0 2003883 2004080 1 106 0.04040404040404041 198 8 "putative acyl transferase" +BW25113_1932__3prime yedL__3prime 0 2004561 2004758 1 1230 0.24242424242424243 198 48 "putative acyl transferase" +BW25113_4495 yedN 0 2004704 2005832 -1 2061 0.09654561558901682 1129 109 "2004703_2005832" +BW25113_4495__5prime yedN__5prime 0 2005833 2006030 -1 751 0.15656565656565657 198 31 "2004703_2005832" +BW25113_4495__3prime yedN__3prime 0 2004506 2004703 -1 1357 0.2676767676767677 198 53 "2004703_2005832" +BW25113_1936 intG 0 2005983 2006144 1 1028 0.22839506172839505 162 37 "2005982_2006144" +BW25113_1936__5prime intG__5prime 0 2005785 2005982 1 348 0.06565656565656566 198 13 "2005982_2006144" +BW25113_1936__3prime intG__3prime 0 2006145 2006342 1 555 0.12626262626262627 198 25 "2005982_2006144" +BW25113_1937 fliE 0 2006181 2006495 -1 988 0.13333333333333333 315 42 "flagellar basal-body component" +BW25113_1937__5prime fliE__5prime 0 2006496 2006693 -1 104 0.03535353535353535 198 7 "flagellar basal-body component" +BW25113_1937__3prime fliE__3prime 0 2005983 2006180 -1 1232 0.20202020202020202 198 40 "flagellar basal-body component" +BW25113_1938 fliF 0 2006710 2008368 1 1500 0.050030138637733576 1659 83 "flagellar basal-body MS-ring and collar protein" +BW25113_1938__5prime fliF__5prime 0 2006512 2006709 1 158 0.04040404040404041 198 8 "flagellar basal-body MS-ring and collar protein" +BW25113_1938__3prime fliF__3prime 0 2008369 2008566 1 75 0.030303030303030304 198 6 "flagellar basal-body MS-ring and collar protein" +BW25113_1939 fliG 0 2008361 2009356 1 836 0.03614457831325301 996 36 "flagellar motor switching and energizing component" +BW25113_1939__5prime fliG__5prime 0 2008163 2008360 1 55 0.010101010101010102 198 2 "flagellar motor switching and energizing component" +BW25113_1939__3prime fliG__3prime 0 2009357 2009554 1 625 0.10101010101010101 198 20 "flagellar motor switching and energizing component" +BW25113_1940 fliH 0 2009349 2010035 1 1021 0.06259097525473072 687 43 "negative regulator of FliI ATPase activity" +BW25113_1940__5prime fliH__5prime 0 2009151 2009348 1 255 0.03535353535353535 198 7 "negative regulator of FliI ATPase activity" +BW25113_1940__3prime fliH__3prime 0 2010036 2010233 1 264 0.050505050505050504 198 10 "negative regulator of FliI ATPase activity" +BW25113_1941 fliI 0 2010035 2011408 1 1542 0.05458515283842795 1374 75 "flagellum-specific ATP synthase" +BW25113_1941__5prime fliI__5prime 0 2009837 2010034 1 98 0.030303030303030304 198 6 "flagellum-specific ATP synthase" +BW25113_1941__3prime fliI__3prime 0 2011409 2011606 1 165 0.045454545454545456 198 9 "flagellum-specific ATP synthase" +BW25113_1942 fliJ 0 2011427 2011870 1 271 0.033783783783783786 444 15 "flagellar protein" +BW25113_1942__5prime fliJ__5prime 0 2011229 2011426 1 101 0.04040404040404041 198 8 "flagellar protein" +BW25113_1942__3prime fliJ__3prime 0 2011871 2012068 1 158 0.0707070707070707 198 14 "flagellar protein" +BW25113_1943 fliK 0 2011867 2012994 1 1804 0.08244680851063829 1128 93 "flagellar hook-length control protein" +BW25113_1943__5prime fliK__5prime 0 2011669 2011866 1 128 0.04040404040404041 198 8 "flagellar hook-length control protein" +BW25113_1943__3prime fliK__3prime 0 2012995 2013192 1 261 0.0707070707070707 198 14 "flagellar hook-length control protein" +BW25113_1944 fliL 0 2013099 2013563 1 892 0.07096774193548387 465 33 "flagellar biosynthesis protein" +BW25113_1944__5prime fliL__5prime 0 2012901 2013098 1 263 0.06060606060606061 198 12 "flagellar biosynthesis protein" +BW25113_1944__3prime fliL__3prime 0 2013564 2013761 1 221 0.07575757575757576 198 15 "flagellar biosynthesis protein" +BW25113_1945 fliM 0 2013568 2014572 1 1174 0.07064676616915423 1005 71 "flagellar motor switching and energizing component" +BW25113_1945__5prime fliM__5prime 0 2013370 2013567 1 175 0.04040404040404041 198 8 "flagellar motor switching and energizing component" +BW25113_1945__3prime fliM__3prime 0 2014573 2014770 1 130 0.045454545454545456 198 9 "flagellar motor switching and energizing component" +BW25113_1946 fliN 0 2014569 2014982 1 441 0.05555555555555555 414 23 "flagellar motor switching and energizing component" +BW25113_1946__5prime fliN__5prime 0 2014371 2014568 1 213 0.050505050505050504 198 10 "flagellar motor switching and energizing component" +BW25113_1946__3prime fliN__3prime 0 2014983 2015180 1 240 0.06565656565656566 198 13 "flagellar motor switching and energizing component" +BW25113_1947 fliO 0 2014985 2015350 1 539 0.06557377049180328 366 24 "flagellar biosynthesis protein" +BW25113_1947__5prime fliO__5prime 0 2014787 2014984 1 259 0.045454545454545456 198 9 "flagellar biosynthesis protein" +BW25113_1947__3prime fliO__3prime 0 2015351 2015548 1 221 0.06060606060606061 198 12 "flagellar biosynthesis protein" +BW25113_1948 fliP 0 2015350 2016087 1 1111 0.052845528455284556 738 39 "flagellar biosynthesis protein" +BW25113_1948__5prime fliP__5prime 0 2015152 2015349 1 502 0.1111111111111111 198 22 "flagellar biosynthesis protein" +BW25113_1948__3prime fliP__3prime 0 2016088 2016285 1 160 0.04040404040404041 198 8 "flagellar biosynthesis protein" +BW25113_1949 fliQ 0 2016097 2016366 1 228 0.044444444444444446 270 12 "flagellar biosynthesis protein" +BW25113_1949__5prime fliQ__5prime 0 2015899 2016096 1 280 0.06565656565656566 198 13 "flagellar biosynthesis protein" +BW25113_1949__3prime fliQ__3prime 0 2016367 2016564 1 361 0.11616161616161616 198 23 "flagellar biosynthesis protein" +BW25113_1950 fliR 0 2016374 2017159 1 1976 0.13994910941475827 786 110 "flagellar export pore protein" +BW25113_1950__5prime fliR__5prime 0 2016176 2016373 1 155 0.03535353535353535 198 7 "flagellar export pore protein" +BW25113_1950__3prime fliR__3prime 0 2017160 2017357 1 380 0.15656565656565657 198 31 "flagellar export pore protein" +BW25113_1951 rcsA 0 2017449 2018072 1 3814 0.2483974358974359 624 155 "transcriptional regulator of colanic acid capsular biosynthesis" +BW25113_1951__5prime rcsA__5prime 0 2017251 2017448 1 3310 0.29292929292929293 198 58 "transcriptional regulator of colanic acid capsular biosynthesis" +BW25113_1951__3prime rcsA__3prime 0 2018073 2018270 1 1667 0.2828282828282828 198 56 "transcriptional regulator of colanic acid capsular biosynthesis" +BW25113_1952 dsrB 0 2018116 2018304 -1 977 0.19576719576719576 189 37 "uncharacterized protein" +BW25113_1952__5prime dsrB__5prime 0 2018305 2018502 -1 279 0.04040404040404041 198 8 "uncharacterized protein" +BW25113_1952__3prime dsrB__3prime 0 2017918 2018115 -1 1043 0.2222222222222222 198 44 "uncharacterized protein" +BW25113_1953 yodD 0 2018467 2018694 1 380 0.07017543859649122 228 16 "uncharacterized protein" +BW25113_1953__5prime yodD__5prime 0 2018269 2018466 1 287 0.045454545454545456 198 9 "uncharacterized protein" +BW25113_1953__3prime yodD__3prime 0 2018695 2018892 1 133 0.030303030303030304 198 6 "uncharacterized protein" +BW25113_1954 dsrA 0 2018708 2018794 -1 31 0.022988505747126436 87 2 "sRNA antisense regulator enhances translation of RpoS and Hfq-dependent" +BW25113_1954__5prime dsrA__5prime 0 2018795 2018992 -1 311 0.06060606060606061 198 12 "sRNA antisense regulator enhances translation of RpoS and Hfq-dependent" +BW25113_1954__3prime dsrA__3prime 0 2018510 2018707 -1 404 0.08585858585858586 198 17 "sRNA antisense regulator enhances translation of RpoS and Hfq-dependent" +BW25113_1955 yedP 0 2018992 2019807 1 1115 0.04779411764705882 816 39 "putative mannosyl-3-phosphoglycerate phosphatase" +BW25113_1955__5prime yedP__5prime 0 2018794 2018991 1 311 0.06060606060606061 198 12 "putative mannosyl-3-phosphoglycerate phosphatase" +BW25113_1955__3prime yedP__3prime 0 2019808 2020005 1 295 0.10606060606060606 198 21 "putative mannosyl-3-phosphoglycerate phosphatase" +BW25113_1956 yedQ 0 2019804 2021498 -1 2119 0.06784660766961652 1695 115 "putative membrane-anchored diguanylate cyclase" +BW25113_1956__5prime yedQ__5prime 0 2021499 2021696 -1 194 0.07575757575757576 198 15 "putative membrane-anchored diguanylate cyclase" +BW25113_1956__3prime yedQ__3prime 0 2019606 2019803 -1 666 0.10101010101010101 198 20 "putative membrane-anchored diguanylate cyclase" +BW25113_1957 yodC 0 2021669 2021851 -1 169 0.0546448087431694 183 10 "uncharacterized protein" +BW25113_1957__5prime yodC__5prime 0 2021852 2022049 -1 130 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_1957__3prime yodC__3prime 0 2021471 2021668 -1 188 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_1958 yedI 0 2021930 2022847 -1 1222 0.07080610021786492 918 65 "DUF808 family inner membrane protein" +BW25113_1958__5prime yedI__5prime 0 2022848 2023045 -1 64 0.020202020202020204 198 4 "DUF808 family inner membrane protein" +BW25113_1958__3prime yedI__3prime 0 2021732 2021929 -1 163 0.045454545454545456 198 9 "DUF808 family inner membrane protein" +BW25113_1959 yedA 0 2023020 2023940 1 1367 0.07057546145494029 921 65 "amino acid exporter for phenylalanine and threonine" +BW25113_1959__5prime yedA__5prime 0 2022822 2023019 1 64 0.020202020202020204 198 4 "amino acid exporter for phenylalanine and threonine" +BW25113_1959__3prime yedA__3prime 0 2023941 2024138 1 235 0.050505050505050504 198 10 "amino acid exporter for phenylalanine and threonine" +BW25113_1960 vsr 0 2023929 2024399 -1 634 0.04883227176220807 471 23 "DNA mismatch endonuclease of very short patch repair" +BW25113_1960__5prime vsr__5prime 0 2024400 2024597 -1 43 0.020202020202020204 198 4 "DNA mismatch endonuclease of very short patch repair" +BW25113_1960__3prime vsr__3prime 0 2023731 2023928 -1 374 0.08080808080808081 198 16 "DNA mismatch endonuclease of very short patch repair" +BW25113_1961 dcm 0 2024380 2025798 -1 1239 0.04792107117688513 1419 68 "DNA cytosine methyltransferase" +BW25113_1961__5prime dcm__5prime 0 2025799 2025996 -1 206 0.03535353535353535 198 7 "DNA cytosine methyltransferase" +BW25113_1961__3prime dcm__3prime 0 2024182 2024379 -1 208 0.030303030303030304 198 6 "DNA cytosine methyltransferase" +BW25113_1962 yedJ 0 2025865 2026560 -1 874 0.05890804597701149 696 41 "putative HD superfamily phosphohydrolase" +BW25113_1962__5prime yedJ__5prime 0 2026561 2026758 -1 331 0.10101010101010101 198 20 "putative HD superfamily phosphohydrolase" +BW25113_1962__3prime yedJ__3prime 0 2025667 2025864 -1 424 0.06565656565656566 198 13 "putative HD superfamily phosphohydrolase" +BW25113_1963 yedR 0 2026600 2026965 -1 722 0.12568306010928962 366 46 "inner membrane protein" +BW25113_1963__5prime yedR__5prime 0 2026966 2027163 -1 388 0.06060606060606061 198 12 "inner membrane protein" +BW25113_1963__3prime yedR__3prime 0 2026402 2026599 -1 454 0.0707070707070707 198 14 "inner membrane protein" +BW25113_4603 rseX 0 2027130 2027220 1 85 0.07692307692307693 91 7 "sRNA antisense regulator of ompA and ompC translation and Hfq-dependent" +BW25113_4603__5prime rseX__5prime 0 2026932 2027129 1 433 0.06565656565656566 198 13 "sRNA antisense regulator of ompA and ompC translation and Hfq-dependent" +BW25113_4603__3prime rseX__3prime 0 2027221 2027418 1 312 0.08080808080808081 198 16 "sRNA antisense regulator of ompA and ompC translation and Hfq-dependent" +BW25113_4496 yedS 0 2027532 2028724 1 4621 0.14333612740989102 1193 171 "2027531_2028724" +BW25113_4496__5prime yedS__5prime 0 2027334 2027531 1 48 0.015151515151515152 198 3 "2027531_2028724" +BW25113_4496__3prime yedS__3prime 0 2028725 2028922 1 1403 0.22727272727272727 198 45 "2027531_2028724" +BW25113_1967 hchA 0 2029316 2030167 1 5567 0.1983568075117371 852 169 "glyoxalase III and Hsp31 molecular chaperone" +BW25113_1967__5prime hchA__5prime 0 2029118 2029315 1 739 0.21717171717171718 198 43 "glyoxalase III and Hsp31 molecular chaperone" +BW25113_1967__3prime hchA__3prime 0 2030168 2030365 1 1547 0.29292929292929293 198 58 "glyoxalase III and Hsp31 molecular chaperone" +BW25113_1968 yedV 0 2030275 2031633 -1 7492 0.17733627667402502 1359 241 "putative sensory kinase in two-component regulatory system with YedW" +BW25113_1968__5prime yedV__5prime 0 2031634 2031831 -1 562 0.15656565656565657 198 31 "putative sensory kinase in two-component regulatory system with YedW" +BW25113_1968__3prime yedV__3prime 0 2030077 2030274 -1 1678 0.2878787878787879 198 57 "putative sensory kinase in two-component regulatory system with YedW" +BW25113_1969 yedW 0 2031633 2032304 -1 3352 0.21726190476190477 672 146 "response regulator family protein" +BW25113_1969__5prime yedW__5prime 0 2032305 2032502 -1 1622 0.20707070707070707 198 41 "response regulator family protein" +BW25113_1969__3prime yedW__3prime 0 2031435 2031632 -1 2108 0.2676767676767677 198 53 "response regulator family protein" +BW25113_1970 hiuH 0 2032437 2032850 1 1447 0.15942028985507245 414 66 "hydroxyisourate hydrolase" +BW25113_1970__5prime hiuH__5prime 0 2032239 2032436 1 1611 0.20707070707070707 198 41 "hydroxyisourate hydrolase" +BW25113_1970__3prime hiuH__3prime 0 2032851 2033048 1 1305 0.19696969696969696 198 39 "hydroxyisourate hydrolase" +BW25113_1971 yedY 0 2032959 2033963 1 1822 0.08159203980099503 1005 82 "membrane-anchored and periplasmic TMAO and DMSO reductase" +BW25113_1971__5prime yedY__5prime 0 2032761 2032958 1 1350 0.20202020202020202 198 40 "membrane-anchored and periplasmic TMAO and DMSO reductase" +BW25113_1971__3prime yedY__3prime 0 2033964 2034161 1 298 0.09595959595959595 198 19 "membrane-anchored and periplasmic TMAO and DMSO reductase" +BW25113_1972 yedZ 0 2033964 2034599 1 1593 0.09905660377358491 636 63 "inner membrane heme subunit for periplasmic YedYZ reductase" +BW25113_1972__5prime yedZ__5prime 0 2033766 2033963 1 343 0.1111111111111111 198 22 "inner membrane heme subunit for periplasmic YedYZ reductase" +BW25113_1972__3prime yedZ__3prime 0 2034600 2034797 1 133 0.025252525252525252 198 5 "inner membrane heme subunit for periplasmic YedYZ reductase" +2034632_2034666 2034632_2034666 0 2034633 2034666 1 91 0.08823529411764706 34 3 "2034632_2034666" +2034632_2034666__5prime 2034632_2034666__5prime 0 2034435 2034632 1 427 0.10101010101010101 198 20 "2034632_2034666" +2034632_2034666__3prime 2034632_2034666__3prime 0 2034667 2034864 1 42 0.010101010101010102 198 2 "2034632_2034666" +BW25113_1973 zinT 0 2034856 2035506 1 1658 0.11827956989247312 651 77 "zinc and cadmium binding protein and periplasmic" +BW25113_1973__5prime zinT__5prime 0 2034658 2034855 1 42 0.010101010101010102 198 2 "zinc and cadmium binding protein and periplasmic" +BW25113_1973__3prime zinT__3prime 0 2035507 2035704 1 2065 0.41414141414141414 198 82 "zinc and cadmium binding protein and periplasmic" +BW25113_1974 yodB 0 2035849 2036379 1 4635 0.2749529190207156 531 146 "cytochrome b561 homolog" +BW25113_1974__5prime yodB__5prime 0 2035651 2035848 1 782 0.1414141414141414 198 28 "cytochrome b561 homolog" +BW25113_1974__3prime yodB__3prime 0 2036380 2036577 1 781 0.15151515151515152 198 30 "cytochrome b561 homolog" +BW25113_1975 serU 0 2036949 2037038 -1 68 0.06666666666666667 90 6 "tRNA-Ser" +BW25113_1975__5prime serU__5prime 0 2037039 2037236 -1 197 0.05555555555555555 198 11 "tRNA-Ser" +BW25113_1975__3prime serU__3prime 0 2036751 2036948 -1 274 0.08585858585858586 198 17 "tRNA-Ser" +BW25113_1976 mtfA 0 2037132 2037929 1 1413 0.041353383458646614 798 33 "anti-repressor for DgsA(Mlc)" +BW25113_1976__5prime mtfA__5prime 0 2036934 2037131 1 222 0.08080808080808081 198 16 "anti-repressor for DgsA(Mlc)" +BW25113_1976__3prime mtfA__3prime 0 2037930 2038127 1 244 0.10101010101010101 198 20 "anti-repressor for DgsA(Mlc)" +BW25113_1977 asnT 0 2038030 2038105 1 188 0.19736842105263158 76 15 "tRNA-Asn" +BW25113_1977__5prime asnT__5prime 0 2037832 2038029 1 134 0.04040404040404041 198 8 "tRNA-Asn" +BW25113_1977__3prime asnT__3prime 0 2038106 2038303 1 218 0.09595959595959595 198 19 "tRNA-Asn" +BW25113_1978 yeeJ 0 2038419 2045495 1 16469 0.09961848240779991 7077 705 "putative adhesin" +BW25113_1978__5prime yeeJ__5prime 0 2038221 2038418 1 411 0.09090909090909091 198 18 "putative adhesin" +BW25113_1978__3prime yeeJ__3prime 0 2045496 2045693 1 1124 0.21212121212121213 198 42 "putative adhesin" +BW25113_4497 yeeL 0 2045757 2046809 -1 4840 0.20892687559354226 1053 220 "2045756_2046809" +BW25113_4497__5prime yeeL__5prime 0 2046810 2047007 -1 1073 0.20707070707070707 198 41 "2045756_2046809" +BW25113_4497__3prime yeeL__3prime 0 2045559 2045756 -1 2324 0.35858585858585856 198 71 "2045756_2046809" +BW25113_1981 shiA 0 2047124 2048440 1 2663 0.11313591495823842 1317 149 "shikimate transporter" +BW25113_1981__5prime shiA__5prime 0 2046926 2047123 1 298 0.06565656565656566 198 13 "shikimate transporter" +BW25113_1981__3prime shiA__3prime 0 2048441 2048638 1 656 0.1717171717171717 198 34 "shikimate transporter" +BW25113_1982 amn 0 2048542 2049996 1 4087 0.1415807560137457 1455 206 "AMP nucleosidase" +BW25113_1982__5prime amn__5prime 0 2048344 2048541 1 531 0.14646464646464646 198 29 "AMP nucleosidase" +BW25113_1982__3prime amn__3prime 0 2049997 2050194 1 400 0.12626262626262627 198 25 "AMP nucleosidase" +BW25113_1983 yeeN 0 2050339 2051055 1 3088 0.21478382147838215 717 154 "UPF0082 family protein" +BW25113_1983__5prime yeeN__5prime 0 2050141 2050338 1 31 0.015151515151515152 198 3 "UPF0082 family protein" +BW25113_1983__3prime yeeN__3prime 0 2051056 2051253 1 38 0.015151515151515152 198 3 "UPF0082 family protein" +BW25113_1984 asnW 0 2051508 2051583 -1 176 0.11842105263157894 76 9 "tRNA-Asn" +BW25113_1984__5prime asnW__5prime 0 2051584 2051781 -1 490 0.10606060606060606 198 21 "tRNA-Asn" +BW25113_1984__3prime asnW__3prime 0 2051310 2051507 -1 535 0.08585858585858586 198 17 "tRNA-Asn" +BW25113_1985 yeeO 0 2051684 2053171 -1 3752 0.12836021505376344 1488 191 "putative multdrug exporter and MATE family" +BW25113_1985__5prime yeeO__5prime 0 2053172 2053369 -1 143 0.06565656565656566 198 13 "putative multdrug exporter and MATE family" +BW25113_1985__3prime yeeO__3prime 0 2051486 2051683 -1 446 0.09595959595959595 198 19 "putative multdrug exporter and MATE family" +BW25113_1986 asnU 0 2053332 2053407 1 121 0.17105263157894737 76 13 "tRNA-Asn" +BW25113_1986__5prime asnU__5prime 0 2053134 2053331 1 28 0.005050505050505051 198 1 "tRNA-Asn" +BW25113_1986__3prime asnU__3prime 0 2053408 2053605 1 241 0.06060606060606061 198 12 "tRNA-Asn" +BW25113_1987 cbl 0 2053445 2054395 -1 1410 0.08307045215562565 951 79 "ssuEADCB/tauABCD operon transcriptional activator" +BW25113_1987__5prime cbl__5prime 0 2054396 2054593 -1 361 0.0707070707070707 198 14 "ssuEADCB/tauABCD operon transcriptional activator" +BW25113_1987__3prime cbl__3prime 0 2053247 2053444 -1 121 0.06565656565656566 198 13 "ssuEADCB/tauABCD operon transcriptional activator" +BW25113_1988 nac 0 2054497 2055414 -1 1596 0.07298474945533769 918 67 "nitrogen assimilation regulon transcriptional regulator; autorepressor" +BW25113_1988__5prime nac__5prime 0 2055415 2055612 -1 284 0.06060606060606061 198 12 "nitrogen assimilation regulon transcriptional regulator; autorepressor" +BW25113_1988__3prime nac__3prime 0 2054299 2054496 -1 389 0.08585858585858586 198 17 "nitrogen assimilation regulon transcriptional regulator; autorepressor" +BW25113_1989 asnV 0 2055741 2055816 1 210 0.2236842105263158 76 17 "tRNA-Asn" +BW25113_1989__5prime asnV__5prime 0 2055543 2055740 1 299 0.06565656565656566 198 13 "tRNA-Asn" +BW25113_1989__3prime asnV__3prime 0 2055817 2056014 1 98 0.05555555555555555 198 11 "tRNA-Asn" +BW25113_1990 ldtA 0 2055872 2056804 -1 1642 0.08467309753483387 933 79 "L and D-transpeptidase linking Lpp to murein" +BW25113_1990__5prime ldtA__5prime 0 2056805 2057002 -1 386 0.09595959595959595 198 19 "L and D-transpeptidase linking Lpp to murein" +BW25113_1990__3prime ldtA__3prime 0 2055674 2055871 -1 267 0.1111111111111111 198 22 "L and D-transpeptidase linking Lpp to murein" +BW25113_1991 cobT 0 2056869 2057948 -1 2288 0.09537037037037037 1080 103 "nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" +BW25113_1991__5prime cobT__5prime 0 2057949 2058146 -1 286 0.08585858585858586 198 17 "nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" +BW25113_1991__3prime cobT__3prime 0 2056671 2056868 -1 344 0.06565656565656566 198 13 "nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" +BW25113_1992 cobS 0 2057960 2058703 -1 697 0.053763440860215055 744 40 "cobalamin synthase" +BW25113_1992__5prime cobS__5prime 0 2058704 2058901 -1 141 0.030303030303030304 198 6 "cobalamin synthase" +BW25113_1992__3prime cobS__3prime 0 2057762 2057959 -1 1013 0.1717171717171717 198 34 "cobalamin synthase" +BW25113_1993 cobU 0 2058700 2059245 -1 631 0.07509157509157509 546 41 "bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase" +BW25113_1993__5prime cobU__5prime 0 2059246 2059443 -1 398 0.08080808080808081 198 16 "bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase" +BW25113_1993__3prime cobU__3prime 0 2058502 2058699 -1 276 0.05555555555555555 198 11 "bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransferase" +BW25113_4639 yeeH 0 2059549 2059635 -1 93 0.08045977011494253 87 7 "2059548_2059635" +BW25113_4639__5prime yeeH__5prime 0 2059636 2059833 -1 329 0.15656565656565657 198 31 "2059548_2059635" +BW25113_4639__3prime yeeH__3prime 0 2059351 2059548 -1 37 0.020202020202020204 198 4 "2059548_2059635" +2059639_2060834 2059639_2060834 0 2059640 2060834 -1 2938 0.17322175732217573 1195 207 "2059639_2060834" +2059639_2060834__5prime 2059639_2060834__5prime 0 2060835 2061032 -1 913 0.2676767676767677 198 53 "2059639_2060834" +2059639_2060834__3prime 2059639_2060834__3prime 0 2059442 2059639 -1 154 0.06565656565656566 198 13 "2059639_2060834" +BW25113_1994 insH1 0 2059786 2060802 -1 2613 0.1750245821042281 1017 178 "IS5 transposase and trans-activator" +BW25113_1994__5prime insH1__5prime 0 2060803 2061000 -1 888 0.2828282828282828 198 56 "IS5 transposase and trans-activator" +BW25113_1994__3prime insH1__3prime 0 2059588 2059785 -1 185 0.08585858585858586 198 17 "IS5 transposase and trans-activator" +2060834_2072512 2060834_2072512 0 2060835 2072512 1 26375 0.1107210138722384 11678 1293 "2060834_2072512" +2060834_2072512__5prime 2060834_2072512__5prime 0 2060637 2060834 1 981 0.2727272727272727 198 54 "2060834_2072512" +2060834_2072512__3prime 2060834_2072512__3prime 0 2072513 2072710 1 121 0.05555555555555555 198 11 "2060834_2072512" +BW25113_4640 yoeG 0 2060841 2061373 -1 2586 0.20637898686679174 533 110 "2060840_2061373" +BW25113_4640__5prime yoeG__5prime 0 2061374 2061571 -1 1035 0.18686868686868688 198 37 "2060840_2061373" +BW25113_4640__3prime yoeG__3prime 0 2060643 2060840 -1 973 0.2777777777777778 198 55 "2060840_2061373" +BW25113_4641 yoeH 0 2061742 2061900 -1 759 0.16352201257861634 159 26 "2061741_2061900" +BW25113_4641__5prime yoeH__5prime 0 2061901 2062098 -1 358 0.06565656565656566 198 13 "2061741_2061900" +BW25113_4641__3prime yoeH__3prime 0 2061544 2061741 -1 986 0.18181818181818182 198 36 "2061741_2061900" +BW25113_4582 yoeA 0 2062116 2063955 1 6173 0.19945652173913042 1840 367 "2062115_2063955" +BW25113_4582__5prime yoeA__5prime 0 2061918 2062115 1 248 0.04040404040404041 198 8 "2062115_2063955" +BW25113_4582__3prime yoeA__3prime 0 2063956 2064153 1 319 0.08585858585858586 198 17 "2062115_2063955" +2062421_2063752 2062421_2063752 0 2062422 2063752 -1 5388 0.2434259954921112 1331 324 "2062421_2063752" +2062421_2063752__5prime 2062421_2063752__5prime 0 2063753 2063950 -1 634 0.16161616161616163 198 32 "2062421_2063752" +2062421_2063752__3prime 2062421_2063752__3prime 0 2062224 2062421 -1 126 0.04040404040404041 198 8 "2062421_2063752" +BW25113_1996 insD1 0 2062433 2063338 -1 3452 0.24503311258278146 906 222 "IS2 transposase TnpB" +BW25113_1996__5prime insD1__5prime 0 2063339 2063536 -1 284 0.1111111111111111 198 22 "IS2 transposase TnpB" +BW25113_1996__3prime insD1__3prime 0 2062235 2062432 -1 231 0.050505050505050504 198 10 "IS2 transposase TnpB" +BW25113_1997 insC1 0 2063296 2063661 -1 1686 0.2568306010928962 366 94 "IS2 repressor TnpA" +BW25113_1997__5prime insC1__5prime 0 2063662 2063859 -1 611 0.18181818181818182 198 36 "IS2 repressor TnpA" +BW25113_1997__3prime insC1__3prime 0 2063098 2063295 -1 483 0.23737373737373738 198 47 "IS2 repressor TnpA" +BW25113_1999 yeeP 0 2064141 2064692 1 1066 0.08695652173913043 552 48 "2064140_2064692" +BW25113_1999__5prime yeeP__5prime 0 2063943 2064140 1 241 0.08080808080808081 198 16 "2064140_2064692" +BW25113_1999__3prime yeeP__3prime 0 2064693 2064890 1 156 0.030303030303030304 198 6 "2064140_2064692" +BW25113_4435 isrC 0 2064796 2064999 1 237 0.029411764705882353 204 6 "novel sRNA and CP4-44; putative prophage remnant" +BW25113_4435__5prime isrC__5prime 0 2064598 2064795 1 347 0.05555555555555555 198 11 "novel sRNA and CP4-44; putative prophage remnant" +BW25113_4435__3prime isrC__3prime 0 2065000 2065197 1 469 0.09090909090909091 198 18 "novel sRNA and CP4-44; putative prophage remnant" +BW25113_2000 flu 0 2065020 2068139 1 6303 0.08525641025641026 3120 266 "CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter" +BW25113_2000__5prime flu__5prime 0 2064822 2065019 1 237 0.030303030303030304 198 6 "CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter" +BW25113_2000__3prime flu__3prime 0 2068140 2068337 1 147 0.045454545454545456 198 9 "CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter" +BW25113_2001 yeeR 0 2068260 2069792 1 1510 0.05740378343118069 1533 88 "CP4-44 prophage; putative membrane protein" +BW25113_2001__5prime yeeR__5prime 0 2068062 2068259 1 376 0.09090909090909091 198 18 "CP4-44 prophage; putative membrane protein" +BW25113_2001__3prime yeeR__3prime 0 2069793 2069990 1 207 0.0707070707070707 198 14 "CP4-44 prophage; putative membrane protein" +BW25113_2002 yeeS 0 2069789 2070235 1 375 0.058165548098434 447 26 "CP4-44 prophage; putative DNA repair protein" +BW25113_2002__5prime yeeS__5prime 0 2069591 2069788 1 165 0.06565656565656566 198 13 "CP4-44 prophage; putative DNA repair protein" +BW25113_2002__3prime yeeS__3prime 0 2070236 2070433 1 507 0.09090909090909091 198 18 "CP4-44 prophage; putative DNA repair protein" +BW25113_2003 yeeT 0 2070298 2070519 1 583 0.11711711711711711 222 26 "CP4-44 prophage; uncharacterized protein" +BW25113_2003__5prime yeeT__5prime 0 2070100 2070297 1 348 0.09090909090909091 198 18 "CP4-44 prophage; uncharacterized protein" +BW25113_2003__3prime yeeT__3prime 0 2070520 2070717 1 784 0.15656565656565657 198 31 "CP4-44 prophage; uncharacterized protein" +BW25113_2004 cbeA 0 2070593 2070961 1 947 0.12466124661246612 369 46 "CP4-44 prophage; cytoskeleton bundling-enhancing factor A; CbtA antitoxin" +BW25113_2004__5prime cbeA__5prime 0 2070395 2070592 1 661 0.15151515151515152 198 30 "CP4-44 prophage; cytoskeleton bundling-enhancing factor A; CbtA antitoxin" +BW25113_2004__3prime cbeA__3prime 0 2070962 2071159 1 481 0.09595959595959595 198 19 "CP4-44 prophage; cytoskeleton bundling-enhancing factor A; CbtA antitoxin" +BW25113_2005 cbtA 0 2071050 2071424 1 768 0.10133333333333333 375 38 "CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system" +BW25113_2005__5prime cbtA__5prime 0 2070852 2071049 1 215 0.0707070707070707 198 14 "CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system" +BW25113_2005__3prime cbtA__3prime 0 2071425 2071622 1 232 0.0707070707070707 198 14 "CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system" +BW25113_2006 yeeW 0 2071421 2071588 1 143 0.05952380952380952 168 10 "2071420_2071588" +BW25113_2006__5prime yeeW__5prime 0 2071223 2071420 1 169 0.05555555555555555 198 11 "2071420_2071588" +BW25113_2006__3prime yeeW__3prime 0 2071589 2071786 1 425 0.14646464646464646 198 29 "2071420_2071588" +BW25113_4642 yoeD 0 2072030 2072158 -1 406 0.12403100775193798 129 16 "2072029_2072158" +BW25113_4642__5prime yoeD__5prime 0 2072159 2072356 -1 119 0.06565656565656566 198 13 "2072029_2072158" +BW25113_4642__3prime yoeD__3prime 0 2071832 2072029 -1 537 0.15656565656565657 198 31 "2072029_2072158" +BW25113_4538 yoeF 0 2072227 2072412 1 206 0.0967741935483871 186 18 "2072226_2072412" +BW25113_4538__5prime yoeF__5prime 0 2072029 2072226 1 406 0.08080808080808081 198 16 "2072226_2072412" +BW25113_4538__3prime yoeF__3prime 0 2072413 2072610 1 172 0.06565656565656566 198 13 "2072226_2072412" +BW25113_2007 yeeX 0 2072513 2072842 -1 213 0.03939393939393939 330 13 "UPF0265 family protein" +BW25113_2007__5prime yeeX__5prime 0 2072843 2073040 -1 278 0.06565656565656566 198 13 "UPF0265 family protein" +BW25113_2007__3prime yeeX__3prime 0 2072315 2072512 -1 246 0.08080808080808081 198 16 "UPF0265 family protein" +BW25113_2008 yeeA 0 2073014 2074072 -1 1486 0.06704438149197356 1059 71 "putative transporter and FUSC family inner membrane protein" +BW25113_2008__5prime yeeA__5prime 0 2074073 2074270 -1 177 0.06060606060606061 198 12 "putative transporter and FUSC family inner membrane protein" +BW25113_2008__3prime yeeA__3prime 0 2072816 2073013 -1 354 0.0707070707070707 198 14 "putative transporter and FUSC family inner membrane protein" +BW25113_2009 sbmC 0 2074270 2074743 -1 824 0.0759493670886076 474 36 "DNA gyrase inhibitor" +BW25113_2009__5prime sbmC__5prime 0 2074744 2074941 -1 130 0.03535353535353535 198 7 "DNA gyrase inhibitor" +BW25113_2009__3prime sbmC__3prime 0 2074072 2074269 -1 177 0.06060606060606061 198 12 "DNA gyrase inhibitor" +BW25113_2010 dacD 0 2074862 2076028 -1 1396 0.07197943444730077 1167 84 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)" +BW25113_2010__5prime dacD__5prime 0 2076029 2076226 -1 484 0.08585858585858586 198 17 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)" +BW25113_2010__3prime dacD__3prime 0 2074664 2074861 -1 168 0.045454545454545456 198 9 "D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)" +BW25113_2011 sbcB 0 2076237 2077664 1 2618 0.09523809523809523 1428 136 "exodeoxyribonuclease I; exonuclease I" +BW25113_2011__5prime sbcB__5prime 0 2076039 2076236 1 484 0.08585858585858586 198 17 "exodeoxyribonuclease I; exonuclease I" +BW25113_2011__3prime sbcB__3prime 0 2077665 2077862 1 674 0.08585858585858586 198 17 "exodeoxyribonuclease I; exonuclease I" +BW25113_2012 yeeD 0 2077707 2077934 -1 727 0.09649122807017543 228 22 "putative TusA family sulfurtransferase" +BW25113_2012__5prime yeeD__5prime 0 2077935 2078132 -1 577 0.08080808080808081 198 16 "putative TusA family sulfurtransferase" +BW25113_2012__3prime yeeD__3prime 0 2077509 2077706 -1 138 0.045454545454545456 198 9 "putative TusA family sulfurtransferase" +BW25113_2013 yeeE 0 2077948 2079006 -1 3617 0.11803588290840415 1059 125 "UPF0394 family inner membrane protein" +BW25113_2013__5prime yeeE__5prime 0 2079007 2079204 -1 229 0.07575757575757576 198 15 "UPF0394 family inner membrane protein" +BW25113_2013__3prime yeeE__3prime 0 2077750 2077947 -1 374 0.09090909090909091 198 18 "UPF0394 family inner membrane protein" +BW25113_2014 plaP 0 2079185 2080543 -1 3695 0.11405445180279618 1359 155 "putrescine importer and low affinity" +BW25113_2014__5prime plaP__5prime 0 2080544 2080741 -1 288 0.050505050505050504 198 10 "putrescine importer and low affinity" +BW25113_2014__3prime plaP__3prime 0 2078987 2079184 -1 180 0.050505050505050504 198 10 "putrescine importer and low affinity" +BW25113_4678 yoeI 0 2080533 2080595 -1 239 0.07936507936507936 63 5 "uncharacterized protein" +BW25113_4678__5prime yoeI__5prime 0 2080596 2080793 -1 99 0.04040404040404041 198 8 "uncharacterized protein" +BW25113_4678__3prime yoeI__3prime 0 2080335 2080532 -1 731 0.1414141414141414 198 28 "uncharacterized protein" +BW25113_2015 yeeY 0 2080810 2081739 -1 1315 0.05913978494623656 930 55 "LysR family putative transcriptional regulator" +BW25113_2015__5prime yeeY__5prime 0 2081740 2081937 -1 414 0.0707070707070707 198 14 "LysR family putative transcriptional regulator" +BW25113_2015__3prime yeeY__3prime 0 2080612 2080809 -1 99 0.04040404040404041 198 8 "LysR family putative transcriptional regulator" +BW25113_2016 yeeZ 0 2081785 2082609 -1 1767 0.07515151515151515 825 62 "putative epimerase" +BW25113_2016__5prime yeeZ__5prime 0 2082610 2082807 -1 502 0.1111111111111111 198 22 "putative epimerase" +BW25113_2016__3prime yeeZ__3prime 0 2081587 2081784 -1 440 0.06060606060606061 198 12 "putative epimerase" +BW25113_4539 yoeB 0 2082692 2082946 -1 286 0.058823529411764705 255 15 "toxin of the YoeB-YefM toxin-antitoxin system" +BW25113_4539__5prime yoeB__5prime 0 2082947 2083144 -1 139 0.06565656565656566 198 13 "toxin of the YoeB-YefM toxin-antitoxin system" +BW25113_4539__3prime yoeB__3prime 0 2082494 2082691 -1 719 0.1414141414141414 198 28 "toxin of the YoeB-YefM toxin-antitoxin system" +BW25113_2017 yefM 0 2082943 2083194 -1 217 0.07142857142857142 252 18 "antitoxin of the YoeB-YefM toxin-antitoxin system" +BW25113_2017__5prime yefM__5prime 0 2083195 2083392 -1 148 0.050505050505050504 198 10 "antitoxin of the YoeB-YefM toxin-antitoxin system" +BW25113_2017__3prime yefM__3prime 0 2082745 2082942 -1 200 0.05555555555555555 198 11 "antitoxin of the YoeB-YefM toxin-antitoxin system" +BW25113_2018 hisL 0 2083477 2083527 1 87 0.13725490196078433 51 7 "his operon leader peptide" +BW25113_2018__5prime hisL__5prime 0 2083279 2083476 1 105 0.04040404040404041 198 8 "his operon leader peptide" +BW25113_2018__3prime hisL__3prime 0 2083528 2083725 1 365 0.07575757575757576 198 15 "his operon leader peptide" +BW25113_2019 hisG 0 2083673 2084572 1 1327 0.07555555555555556 900 68 "ATP phosphoribosyltransferase" +BW25113_2019__5prime hisG__5prime 0 2083475 2083672 1 452 0.1111111111111111 198 22 "ATP phosphoribosyltransferase" +BW25113_2019__3prime hisG__3prime 0 2084573 2084770 1 399 0.050505050505050504 198 10 "ATP phosphoribosyltransferase" +BW25113_2020 hisD 0 2084578 2085882 1 2326 0.06896551724137931 1305 90 "bifunctional histidinal dehydrogenase/ histidinol dehydrogenase" +BW25113_2020__5prime hisD__5prime 0 2084380 2084577 1 211 0.0707070707070707 198 14 "bifunctional histidinal dehydrogenase/ histidinol dehydrogenase" +BW25113_2020__3prime hisD__3prime 0 2085883 2086080 1 192 0.04040404040404041 198 8 "bifunctional histidinal dehydrogenase/ histidinol dehydrogenase" +BW25113_2021 hisC 0 2085879 2086949 1 1146 0.05042016806722689 1071 54 "histidinol-phosphate aminotransferase" +BW25113_2021__5prime hisC__5prime 0 2085681 2085878 1 239 0.08585858585858586 198 17 "histidinol-phosphate aminotransferase" +BW25113_2021__3prime hisC__3prime 0 2086950 2087147 1 149 0.04040404040404041 198 8 "histidinol-phosphate aminotransferase" +BW25113_2022 hisB 0 2086949 2088016 1 1516 0.08239700374531835 1068 88 "fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase" +BW25113_2022__5prime hisB__5prime 0 2086751 2086948 1 68 0.025252525252525252 198 5 "fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase" +BW25113_2022__3prime hisB__3prime 0 2088017 2088214 1 145 0.03535353535353535 198 7 "fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase" +BW25113_2023 hisH 0 2088016 2088606 1 827 0.05922165820642978 591 35 "imidazole glycerol phosphate synthase and glutamine amidotransferase subunit with HisF" +BW25113_2023__5prime hisH__5prime 0 2087818 2088015 1 425 0.12121212121212122 198 24 "imidazole glycerol phosphate synthase and glutamine amidotransferase subunit with HisF" +BW25113_2023__3prime hisH__3prime 0 2088607 2088804 1 394 0.05555555555555555 198 11 "imidazole glycerol phosphate synthase and glutamine amidotransferase subunit with HisF" +BW25113_2024 hisA 0 2088606 2089343 1 1126 0.056910569105691054 738 42 '"N-(5''-phospho-L-ribosyl-formimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide isomerase"' +BW25113_2024__5prime hisA__5prime 0 2088408 2088605 1 513 0.08080808080808081 198 16 '"N-(5''-phospho-L-ribosyl-formimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide isomerase"' +BW25113_2024__3prime hisA__3prime 0 2089344 2089541 1 48 0.020202020202020204 198 4 '"N-(5''-phospho-L-ribosyl-formimino)-5-amino-1-(5''-phosphoribosyl)-4-imidazolecarboxamide isomerase"' +BW25113_2025 hisF 0 2089325 2090101 1 851 0.05405405405405406 777 42 "imidazole glycerol phosphate synthase and catalytic subunit with HisH" +BW25113_2025__5prime hisF__5prime 0 2089127 2089324 1 277 0.05555555555555555 198 11 "imidazole glycerol phosphate synthase and catalytic subunit with HisH" +BW25113_2025__3prime hisF__3prime 0 2090102 2090299 1 229 0.05555555555555555 198 11 "imidazole glycerol phosphate synthase and catalytic subunit with HisH" +BW25113_2026 hisI 0 2090095 2090706 1 715 0.06535947712418301 612 40 "fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase" +BW25113_2026__5prime hisI__5prime 0 2089897 2090094 1 104 0.04040404040404041 198 8 "fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase" +BW25113_2026__3prime hisI__3prime 0 2090707 2090904 1 225 0.03535353535353535 198 7 "fused phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase" +2090717_2090747 2090717_2090747 0 2090718 2090747 1 0 0.0 30 0 "2090717_2090747" +2090717_2090747__5prime 2090717_2090747__5prime 0 2090520 2090717 1 280 0.07575757575757576 198 15 "2090717_2090747" +2090717_2090747__3prime 2090717_2090747__3prime 0 2090748 2090945 1 225 0.03535353535353535 198 7 "2090717_2090747" +BW25113_2027 wzzB 0 2090802 2091782 -1 1806 0.08256880733944955 981 81 "regulator of length of O-antigen component of lipopolysaccharide chains" +BW25113_2027__5prime wzzB__5prime 0 2091783 2091980 -1 767 0.17676767676767677 198 35 "regulator of length of O-antigen component of lipopolysaccharide chains" +BW25113_2027__3prime wzzB__3prime 0 2090604 2090801 -1 320 0.050505050505050504 198 10 "regulator of length of O-antigen component of lipopolysaccharide chains" +BW25113_2028 ugd 0 2091928 2093094 -1 6750 0.23736075407026563 1167 277 "UDP-glucose 6-dehydrogenase" +BW25113_2028__5prime ugd__5prime 0 2093095 2093292 -1 310 0.08585858585858586 198 17 "UDP-glucose 6-dehydrogenase" +BW25113_2028__3prime ugd__3prime 0 2091730 2091927 -1 454 0.11616161616161616 198 23 "UDP-glucose 6-dehydrogenase" +BW25113_2029 gnd 0 2093343 2094749 -1 4046 0.11087420042643924 1407 156 "6-phosphogluconate dehydrogenase and decarboxylating" +BW25113_2029__5prime gnd__5prime 0 2094750 2094947 -1 426 0.09090909090909091 198 18 "6-phosphogluconate dehydrogenase and decarboxylating" +BW25113_2029__3prime gnd__3prime 0 2093145 2093342 -1 202 0.0707070707070707 198 14 "6-phosphogluconate dehydrogenase and decarboxylating" +BW25113_4571 wbbL 0 2094877 2096870 -1 6545 0.16198595787362086 1994 323 "2094876_2096870" +BW25113_4571__5prime wbbL__5prime 0 2096871 2097068 -1 142 0.03535353535353535 198 7 "2094876_2096870" +BW25113_4571__3prime wbbL__3prime 0 2094679 2094876 -1 1074 0.23737373737373738 198 47 "2094876_2096870" +2095229_2096424 2095229_2096424 0 2095230 2096424 -1 2489 0.17489539748953975 1195 209 "2095229_2096424" +2095229_2096424__5prime 2095229_2096424__5prime 0 2096425 2096622 -1 776 0.12121212121212122 198 24 "2095229_2096424" +2095229_2096424__3prime 2095229_2096424__3prime 0 2095032 2095229 -1 1257 0.1919191919191919 198 38 "2095229_2096424" +BW25113_2030 insH1 0 2095376 2096392 -1 2177 0.17305801376597837 1017 176 "IS5 transposase and trans-activator" +BW25113_2030__5prime insH1__5prime 0 2096393 2096590 -1 906 0.20202020202020202 198 40 "IS5 transposase and trans-activator" +BW25113_2030__3prime insH1__3prime 0 2095178 2095375 -1 662 0.10606060606060606 198 21 "IS5 transposase and trans-activator" +BW25113_2032 wbbK 0 2096872 2097990 -1 1786 0.06344950848972297 1119 71 "lipopolysaccharide biosynthesis protein" +BW25113_2032__5prime wbbK__5prime 0 2097991 2098188 -1 969 0.15656565656565657 198 31 "lipopolysaccharide biosynthesis protein" +BW25113_2032__3prime wbbK__3prime 0 2096674 2096871 -1 1896 0.1919191919191919 198 38 "lipopolysaccharide biosynthesis protein" +BW25113_2033 wbbJ 0 2097975 2098565 -1 4727 0.21150592216582065 591 125 "putative lipopolysaccharide biosynthesis O-acetyl transferase" +BW25113_2033__5prime wbbJ__5prime 0 2098566 2098763 -1 782 0.12121212121212122 198 24 "putative lipopolysaccharide biosynthesis O-acetyl transferase" +BW25113_2033__3prime wbbJ__3prime 0 2097777 2097974 -1 426 0.08080808080808081 198 16 "putative lipopolysaccharide biosynthesis O-acetyl transferase" +BW25113_2034 wbbI 0 2098546 2099538 -1 4441 0.15508559919436052 993 154 "d-Galf:alpha-d-Glc beta-1 and 6-galactofuranosyltransferase" +BW25113_2034__5prime wbbI__5prime 0 2099539 2099736 -1 32 0.015151515151515152 198 3 "d-Galf:alpha-d-Glc beta-1 and 6-galactofuranosyltransferase" +BW25113_2034__3prime wbbI__3prime 0 2098348 2098545 -1 1785 0.1717171717171717 198 34 "d-Galf:alpha-d-Glc beta-1 and 6-galactofuranosyltransferase" +BW25113_2035 wbbH 0 2099541 2100707 -1 4641 0.11053984575835475 1167 129 "O-antigen polymerase" +BW25113_2035__5prime wbbH__5prime 0 2100708 2100905 -1 239 0.06060606060606061 198 12 "O-antigen polymerase" +BW25113_2035__3prime wbbH__3prime 0 2099343 2099540 -1 789 0.1414141414141414 198 28 "O-antigen polymerase" +BW25113_2036 glf 0 2100707 2101810 -1 5765 0.1213768115942029 1104 134 "UDP-galactopyranose mutase and FAD/NAD(P)-binding" +BW25113_2036__5prime glf__5prime 0 2101811 2102008 -1 600 0.11616161616161616 198 23 "UDP-galactopyranose mutase and FAD/NAD(P)-binding" +BW25113_2036__3prime glf__3prime 0 2100509 2100706 -1 436 0.06565656565656566 198 13 "UDP-galactopyranose mutase and FAD/NAD(P)-binding" +BW25113_2037 wzxB 0 2101818 2103065 -1 3806 0.1233974358974359 1248 154 "putative polisoprenol-linked O-antigen transporter" +BW25113_2037__5prime wzxB__5prime 0 2103066 2103263 -1 546 0.16666666666666666 198 33 "putative polisoprenol-linked O-antigen transporter" +BW25113_2037__3prime wzxB__3prime 0 2101620 2101817 -1 578 0.09595959595959595 198 19 "putative polisoprenol-linked O-antigen transporter" +BW25113_2038 rfbC 0 2103062 2103619 -1 3354 0.2078853046594982 558 116 "dTDP-4-deoxyrhamnose-3 and 5-epimerase" +BW25113_2038__5prime rfbC__5prime 0 2103620 2103817 -1 793 0.1414141414141414 198 28 "dTDP-4-deoxyrhamnose-3 and 5-epimerase" +BW25113_2038__3prime rfbC__3prime 0 2102864 2103061 -1 423 0.10101010101010101 198 20 "dTDP-4-deoxyrhamnose-3 and 5-epimerase" +BW25113_2039 rfbA 0 2103619 2104500 -1 9989 0.264172335600907 882 233 "glucose-1-phosphate thymidylyltransferase" +BW25113_2039__5prime rfbA__5prime 0 2104501 2104698 -1 1291 0.16161616161616163 198 32 "glucose-1-phosphate thymidylyltransferase" +BW25113_2039__3prime rfbA__3prime 0 2103421 2103618 -1 1239 0.17676767676767677 198 35 "glucose-1-phosphate thymidylyltransferase" +BW25113_2040 rfbD 0 2104558 2105457 -1 10033 0.2733333333333333 900 246 "dTDP-4-dehydrorhamnose reductase subunit and NAD(P)-binding and of dTDP-L-rhamnose synthase" +BW25113_2040__5prime rfbD__5prime 0 2105458 2105655 -1 3945 0.3787878787878788 198 75 "dTDP-4-dehydrorhamnose reductase subunit and NAD(P)-binding and of dTDP-L-rhamnose synthase" +BW25113_2040__3prime rfbD__3prime 0 2104360 2104557 -1 2227 0.25252525252525254 198 50 "dTDP-4-dehydrorhamnose reductase subunit and NAD(P)-binding and of dTDP-L-rhamnose synthase" +BW25113_2041 rfbB 0 2105457 2106542 -1 11684 0.26519337016574585 1086 288 "dTDP-glucose 4 and 6 dehydratase and NAD(P)-binding" +BW25113_2041__5prime rfbB__5prime 0 2106543 2106740 -1 1386 0.20707070707070707 198 41 "dTDP-glucose 4 and 6 dehydratase and NAD(P)-binding" +BW25113_2041__3prime rfbB__3prime 0 2105259 2105456 -1 3086 0.31313131313131315 198 62 "dTDP-glucose 4 and 6 dehydratase and NAD(P)-binding" +BW25113_2042 wcaN 0 2106915 2107808 -1 2580 0.1185682326621924 894 106 "putative regulatory subunit for GalU" +BW25113_2042__5prime wcaN__5prime 0 2107809 2108006 -1 864 0.20202020202020202 198 40 "putative regulatory subunit for GalU" +BW25113_2042__3prime wcaN__3prime 0 2106717 2106914 -1 153 0.06060606060606061 198 12 "putative regulatory subunit for GalU" +BW25113_2043 wcaM 0 2107983 2109377 -1 3927 0.11397849462365592 1395 159 "colanic acid biosynthesis protein" +BW25113_2043__5prime wcaM__5prime 0 2109378 2109575 -1 162 0.050505050505050504 198 10 "colanic acid biosynthesis protein" +BW25113_2043__3prime wcaM__3prime 0 2107785 2107982 -1 790 0.17676767676767677 198 35 "colanic acid biosynthesis protein" +BW25113_2044 wcaL 0 2109388 2110608 -1 975 0.043407043407043405 1221 53 "putative glycosyl transferase" +BW25113_2044__5prime wcaL__5prime 0 2110609 2110806 -1 577 0.12121212121212122 198 24 "putative glycosyl transferase" +BW25113_2044__3prime wcaL__3prime 0 2109190 2109387 -1 250 0.045454545454545456 198 9 "putative glycosyl transferase" +BW25113_2045 wcaK 0 2110605 2111885 -1 2650 0.09055425448868072 1281 116 "colanic acid biosynthesis protein" +BW25113_2045__5prime wcaK__5prime 0 2111886 2112083 -1 332 0.13636363636363635 198 27 "colanic acid biosynthesis protein" +BW25113_2045__3prime wcaK__3prime 0 2110407 2110604 -1 49 0.030303030303030304 198 6 "colanic acid biosynthesis protein" +2111946_2112132 2111946_2112132 0 2111947 2112132 1 326 0.15591397849462366 186 29 "2111946_2112132" +2111946_2112132__5prime 2111946_2112132__5prime 0 2111749 2111946 1 170 0.050505050505050504 198 10 "2111946_2112132" +2111946_2112132__3prime 2111946_2112132__3prime 0 2112133 2112330 1 102 0.045454545454545456 198 9 "2111946_2112132" +BW25113_2046 wzxC 0 2112161 2113639 -1 1605 0.06152805949966193 1479 91 "putative colanic acid exporter" +BW25113_2046__5prime wzxC__5prime 0 2113640 2113837 -1 111 0.05555555555555555 198 11 "putative colanic acid exporter" +BW25113_2046__3prime wzxC__3prime 0 2111963 2112160 -1 300 0.13131313131313133 198 26 "putative colanic acid exporter" +BW25113_2047 wcaJ 0 2113641 2115035 -1 1767 0.07455197132616488 1395 104 "colanic biosynthesis UDP-glucose lipid carrier transferase" +BW25113_2047__5prime wcaJ__5prime 0 2115036 2115233 -1 222 0.050505050505050504 198 10 "colanic biosynthesis UDP-glucose lipid carrier transferase" +BW25113_2047__3prime wcaJ__3prime 0 2113443 2113640 -1 233 0.050505050505050504 198 10 "colanic biosynthesis UDP-glucose lipid carrier transferase" +BW25113_2048 cpsG 0 2115090 2116460 -1 1323 0.058351568198395334 1371 80 "phosphomannomutase" +BW25113_2048__5prime cpsG__5prime 0 2116461 2116658 -1 202 0.06060606060606061 198 12 "phosphomannomutase" +BW25113_2048__3prime cpsG__3prime 0 2114892 2115089 -1 383 0.09595959595959595 198 19 "phosphomannomutase" +BW25113_2049 cpsB 0 2116565 2118001 -1 1703 0.07306889352818371 1437 105 "mannose-1-phosphate guanyltransferase" +BW25113_2049__5prime cpsB__5prime 0 2118002 2118199 -1 0 0.0 198 0 "mannose-1-phosphate guanyltransferase" +BW25113_2049__3prime cpsB__3prime 0 2116367 2116564 -1 132 0.05555555555555555 198 11 "mannose-1-phosphate guanyltransferase" +BW25113_2050 wcaI 0 2118004 2119227 -1 619 0.035130718954248366 1224 43 "putative glycosyl transferase" +BW25113_2050__5prime wcaI__5prime 0 2119228 2119425 -1 151 0.06565656565656566 198 13 "putative glycosyl transferase" +BW25113_2050__3prime wcaI__3prime 0 2117806 2118003 -1 287 0.08080808080808081 198 16 "putative glycosyl transferase" +BW25113_2051 wcaH 0 2119224 2119703 -1 563 0.07708333333333334 480 37 "GDP-mannose mannosyl hydrolase" +BW25113_2051__5prime wcaH__5prime 0 2119704 2119901 -1 31 0.025252525252525252 198 5 "GDP-mannose mannosyl hydrolase" +BW25113_2051__3prime wcaH__3prime 0 2119026 2119223 -1 179 0.06060606060606061 198 12 "GDP-mannose mannosyl hydrolase" +BW25113_2052 wcaG 0 2119706 2120671 -1 1071 0.07246376811594203 966 70 "bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase" +BW25113_2052__5prime wcaG__5prime 0 2120672 2120869 -1 71 0.03535353535353535 198 7 "bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase" +BW25113_2052__3prime wcaG__3prime 0 2119508 2119705 -1 195 0.08080808080808081 198 16 "bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase" +BW25113_2053 gmd 0 2120674 2121795 -1 2391 0.0944741532976827 1122 106 "GDP-D-mannose dehydratase and NAD(P)-binding" +BW25113_2053__5prime gmd__5prime 0 2121796 2121993 -1 469 0.18181818181818182 198 36 "GDP-D-mannose dehydratase and NAD(P)-binding" +BW25113_2053__3prime gmd__3prime 0 2120476 2120673 -1 225 0.050505050505050504 198 10 "GDP-D-mannose dehydratase and NAD(P)-binding" +BW25113_2054 wcaF 0 2121821 2122369 -1 1672 0.17122040072859745 549 94 "putative acyl transferase" +BW25113_2054__5prime wcaF__5prime 0 2122370 2122567 -1 304 0.06060606060606061 198 12 "putative acyl transferase" +BW25113_2054__3prime wcaF__3prime 0 2121623 2121820 -1 837 0.1414141414141414 198 28 "putative acyl transferase" +BW25113_2055 wcaE 0 2122385 2123131 -1 2236 0.15127175368139223 747 113 "putative glycosyl transferase" +BW25113_2055__5prime wcaE__5prime 0 2123132 2123329 -1 232 0.09090909090909091 198 18 "putative glycosyl transferase" +BW25113_2055__3prime wcaE__3prime 0 2122187 2122384 -1 278 0.07575757575757576 198 15 "putative glycosyl transferase" +BW25113_2056 wcaD 0 2123142 2124359 -1 2721 0.12479474548440066 1218 152 "putative colanic acid polymerase" +BW25113_2056__5prime wcaD__5prime 0 2124360 2124557 -1 354 0.07575757575757576 198 15 "putative colanic acid polymerase" +BW25113_2056__3prime wcaD__3prime 0 2122944 2123141 -1 1208 0.3181818181818182 198 63 "putative colanic acid polymerase" +BW25113_2057 wcaC 0 2124334 2125551 -1 1450 0.054187192118226604 1218 66 "putative glycosyl transferase" +BW25113_2057__5prime wcaC__5prime 0 2125552 2125749 -1 386 0.1111111111111111 198 22 "putative glycosyl transferase" +BW25113_2057__3prime wcaC__3prime 0 2124136 2124333 -1 389 0.10101010101010101 198 20 "putative glycosyl transferase" +BW25113_2058 wcaB 0 2125548 2126036 -1 600 0.07975460122699386 489 39 "putative acyl transferase" +BW25113_2058__5prime wcaB__5prime 0 2126037 2126234 -1 244 0.08080808080808081 198 16 "putative acyl transferase" +BW25113_2058__3prime wcaB__3prime 0 2125350 2125547 -1 65 0.025252525252525252 198 5 "putative acyl transferase" +BW25113_2059 wcaA 0 2126039 2126878 -1 1443 0.0761904761904762 840 64 "putative glycosyl transferase" +BW25113_2059__5prime wcaA__5prime 0 2126879 2127076 -1 157 0.045454545454545456 198 9 "putative glycosyl transferase" +BW25113_2059__3prime wcaA__3prime 0 2125841 2126038 -1 195 0.08080808080808081 198 16 "putative glycosyl transferase" +2126912_2126946 2126912_2126946 0 2126913 2126946 1 0 0.0 34 0 "2126912_2126946" +2126912_2126946__5prime 2126912_2126946__5prime 0 2126715 2126912 1 272 0.045454545454545456 198 9 "2126912_2126946" +2126912_2126946__3prime 2126912_2126946__3prime 0 2126947 2127144 1 236 0.0707070707070707 198 14 "2126912_2126946" +BW25113_2060 wzc 0 2126971 2129133 -1 2360 0.05732778548312529 2163 124 "colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase" +BW25113_2060__5prime wzc__5prime 0 2129134 2129331 -1 428 0.1111111111111111 198 22 "colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase" +BW25113_2060__3prime wzc__3prime 0 2126773 2126970 -1 149 0.03535353535353535 198 7 "colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase" +BW25113_2061 wzb 0 2129136 2129579 -1 726 0.07432432432432433 444 33 "colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase" +BW25113_2061__5prime wzb__5prime 0 2129580 2129777 -1 282 0.06565656565656566 198 13 "colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase" +BW25113_2061__3prime wzb__3prime 0 2128938 2129135 -1 522 0.06565656565656566 198 13 "colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase" +BW25113_2062 wza 0 2129585 2130724 -1 3574 0.13157894736842105 1140 150 "colanic acid export protein; outer membrane auxillary lipoprotein" +BW25113_2062__5prime wza__5prime 0 2130725 2130922 -1 563 0.15656565656565657 198 31 "colanic acid export protein; outer membrane auxillary lipoprotein" +BW25113_2062__3prime wza__3prime 0 2129387 2129584 -1 298 0.05555555555555555 198 11 "colanic acid export protein; outer membrane auxillary lipoprotein" +BW25113_2063 yegH 0 2131383 2132966 1 2941 0.0763888888888889 1584 121 "inner membrane protein" +BW25113_2063__5prime yegH__5prime 0 2131185 2131382 1 499 0.09595959595959595 198 19 "inner membrane protein" +BW25113_2063__3prime yegH__3prime 0 2132967 2133164 1 369 0.050505050505050504 198 10 "inner membrane protein" +2133182_2133219 2133182_2133219 0 2133183 2133219 1 84 0.05405405405405406 37 2 "2133182_2133219" +2133182_2133219__5prime 2133182_2133219__5prime 0 2132985 2133182 1 384 0.05555555555555555 198 11 "2133182_2133219" +2133182_2133219__3prime 2133182_2133219__3prime 0 2133220 2133417 1 167 0.03535353535353535 198 7 "2133182_2133219" +BW25113_2064 asmA 0 2133240 2135093 -1 1732 0.05447680690399137 1854 101 "suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein" +BW25113_2064__5prime asmA__5prime 0 2135094 2135291 -1 331 0.07575757575757576 198 15 "suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein" +BW25113_2064__3prime asmA__3prime 0 2133042 2133239 -1 276 0.03535353535353535 198 7 "suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein" +BW25113_2065 dcd 0 2135115 2135696 -1 839 0.061855670103092786 582 36 '"2''-deoxycytidine 5''-triphosphate deaminase"' +BW25113_2065__5prime dcd__5prime 0 2135697 2135894 -1 270 0.09595959595959595 198 19 '"2''-deoxycytidine 5''-triphosphate deaminase"' +BW25113_2065__3prime dcd__3prime 0 2134917 2135114 -1 231 0.03535353535353535 198 7 '"2''-deoxycytidine 5''-triphosphate deaminase"' +BW25113_2066 udk 0 2135788 2136429 -1 756 0.06386292834890965 642 41 "uridine/cytidine kinase" +BW25113_2066__5prime udk__5prime 0 2136430 2136627 -1 218 0.05555555555555555 198 11 "uridine/cytidine kinase" +BW25113_2066__3prime udk__3prime 0 2135590 2135787 -1 257 0.09090909090909091 198 18 "uridine/cytidine kinase" +BW25113_2067 yegE 0 2136747 2140064 1 6154 0.07323688969258589 3318 243 "putative diguanylate cyclase" +BW25113_2067__5prime yegE__5prime 0 2136549 2136746 1 212 0.07575757575757576 198 15 "putative diguanylate cyclase" +BW25113_2067__3prime yegE__3prime 0 2140065 2140262 1 157 0.03535353535353535 198 7 "putative diguanylate cyclase" +2140080_2140164 2140080_2140164 0 2140081 2140164 1 0 0.0 84 0 "2140080_2140164" +2140080_2140164__5prime 2140080_2140164__5prime 0 2139883 2140080 1 428 0.08080808080808081 198 16 "2140080_2140164" +2140080_2140164__3prime 2140080_2140164__3prime 0 2140165 2140362 1 162 0.04040404040404041 198 8 "2140080_2140164" +BW25113_2068 alkA 0 2140173 2141021 -1 704 0.0636042402826855 849 54 "3-methyl-adenine DNA glycosylase II" +BW25113_2068__5prime alkA__5prime 0 2141022 2141219 -1 322 0.0707070707070707 198 14 "3-methyl-adenine DNA glycosylase II" +BW25113_2068__3prime alkA__3prime 0 2139975 2140172 -1 384 0.06060606060606061 198 12 "3-methyl-adenine DNA glycosylase II" +BW25113_2069 yegD 0 2141155 2142507 1 1749 0.07390983000739099 1353 100 "Hsp70 chaperone family protein" +BW25113_2069__5prime yegD__5prime 0 2140957 2141154 1 254 0.05555555555555555 198 11 "Hsp70 chaperone family protein" +BW25113_2069__3prime yegD__3prime 0 2142508 2142705 1 100 0.04040404040404041 198 8 "Hsp70 chaperone family protein" +BW25113_2070 yegI 0 2142520 2144466 -1 3702 0.09090909090909091 1947 177 "protein kinase-related putative non-specific DNA-binding protein" +BW25113_2070__5prime yegI__5prime 0 2144467 2144664 -1 20 0.005050505050505051 198 1 "protein kinase-related putative non-specific DNA-binding protein" +BW25113_2070__3prime yegI__3prime 0 2142322 2142519 -1 24 0.010101010101010102 198 2 "protein kinase-related putative non-specific DNA-binding protein" +BW25113_2071 yegJ 0 2144666 2145127 1 1077 0.1645021645021645 462 76 "uncharacterized protein" +BW25113_2071__5prime yegJ__5prime 0 2144468 2144665 1 20 0.005050505050505051 198 1 "uncharacterized protein" +BW25113_2071__3prime yegJ__3prime 0 2145128 2145325 1 617 0.1717171717171717 198 34 "uncharacterized protein" +2145154_2145182 2145154_2145182 0 2145155 2145182 1 62 0.17857142857142858 28 5 "2145154_2145182" +2145154_2145182__5prime 2145154_2145182__5prime 0 2144957 2145154 1 421 0.14646464646464646 198 29 "2145154_2145182" +2145154_2145182__3prime 2145154_2145182__3prime 0 2145183 2145380 1 658 0.16161616161616163 198 32 "2145154_2145182" +BW25113_2072 yegK 0 2145192 2145953 -1 1358 0.08661417322834646 762 66 "ser/thr phosphatase-related protein" +BW25113_2072__5prime yegK__5prime 0 2145954 2146151 -1 437 0.10606060606060606 198 21 "ser/thr phosphatase-related protein" +BW25113_2072__3prime yegK__3prime 0 2144994 2145191 -1 389 0.15656565656565657 198 31 "ser/thr phosphatase-related protein" +BW25113_2073 yegL 0 2145950 2146609 -1 1291 0.10454545454545454 660 69 "VMA domain protein" +BW25113_2073__5prime yegL__5prime 0 2146610 2146807 -1 254 0.10101010101010101 198 20 "VMA domain protein" +BW25113_2073__3prime yegL__3prime 0 2145752 2145949 -1 168 0.050505050505050504 198 10 "VMA domain protein" +BW25113_4436 sibA 0 2146790 2146932 1 378 0.13986013986013987 143 20 "sRNA antisense regulator of toxic IbsA protein" +BW25113_4436__5prime sibA__5prime 0 2146592 2146789 1 199 0.07575757575757576 198 15 "sRNA antisense regulator of toxic IbsA protein" +BW25113_4436__3prime sibA__3prime 0 2146933 2147130 1 494 0.13131313131313133 198 26 "sRNA antisense regulator of toxic IbsA protein" +BW25113_4667 ibsA 0 2146830 2146889 -1 124 0.15 60 9 "toxic membrane protein" +BW25113_4667__5prime ibsA__5prime 0 2146890 2147087 -1 187 0.06565656565656566 198 13 "toxic membrane protein" +BW25113_4667__3prime ibsA__3prime 0 2146632 2146829 -1 453 0.13131313131313133 198 26 "toxic membrane protein" +BW25113_4437 sibB 0 2147125 2147260 1 200 0.07352941176470588 136 10 "sRNA antisense regulator of toxic IbsB protein" +BW25113_4437__5prime sibB__5prime 0 2146927 2147124 1 489 0.12626262626262627 198 25 "sRNA antisense regulator of toxic IbsB protein" +BW25113_4437__3prime sibB__3prime 0 2147261 2147458 1 122 0.020202020202020204 198 4 "sRNA antisense regulator of toxic IbsB protein" +BW25113_4668 ibsB 0 2147162 2147218 -1 58 0.07017543859649122 57 4 "toxic membrane protein" +BW25113_4668__5prime ibsB__5prime 0 2147219 2147416 -1 122 0.020202020202020204 198 4 "toxic membrane protein" +BW25113_4668__3prime ibsB__3prime 0 2146964 2147161 -1 631 0.15656565656565657 198 31 "toxic membrane protein" +BW25113_2074 mdtA 0 2147497 2148744 1 882 0.036057692307692304 1248 45 "multidrug efflux system and subunit A" +BW25113_2074__5prime mdtA__5prime 0 2147299 2147496 1 122 0.020202020202020204 198 4 "multidrug efflux system and subunit A" +BW25113_2074__3prime mdtA__3prime 0 2148745 2148942 1 233 0.050505050505050504 198 10 "multidrug efflux system and subunit A" +BW25113_2075 mdtB 0 2148744 2151866 1 5862 0.08805635606788345 3123 275 "multidrug efflux system and subunit B" +BW25113_2075__5prime mdtB__5prime 0 2148546 2148743 1 408 0.06565656565656566 198 13 "multidrug efflux system and subunit B" +BW25113_2075__3prime mdtB__3prime 0 2151867 2152064 1 291 0.04040404040404041 198 8 "multidrug efflux system and subunit B" +BW25113_2076 mdtC 0 2151867 2154944 1 4432 0.0627030539311241 3078 193 "multidrug efflux system and subunit C" +BW25113_2076__5prime mdtC__5prime 0 2151669 2151866 1 367 0.12626262626262627 198 25 "multidrug efflux system and subunit C" +BW25113_2076__3prime mdtC__3prime 0 2154945 2155142 1 463 0.08080808080808081 198 16 "multidrug efflux system and subunit C" +BW25113_2077 mdtD 0 2154945 2156360 1 2295 0.0713276836158192 1416 101 "putative arabinose efflux transporter" +BW25113_2077__5prime mdtD__5prime 0 2154747 2154944 1 597 0.11616161616161616 198 23 "putative arabinose efflux transporter" +BW25113_2077__3prime mdtD__3prime 0 2156361 2156558 1 555 0.12121212121212122 198 24 "putative arabinose efflux transporter" +BW25113_2078 baeS 0 2156357 2157760 1 1764 0.05982905982905983 1404 84 "sensory histidine kinase in two-component regulatory system with BaeR" +BW25113_2078__5prime baeS__5prime 0 2156159 2156356 1 160 0.030303030303030304 198 6 "sensory histidine kinase in two-component regulatory system with BaeR" +BW25113_2078__3prime baeS__3prime 0 2157761 2157958 1 205 0.045454545454545456 198 9 "sensory histidine kinase in two-component regulatory system with BaeR" +BW25113_2079 baeR 0 2157757 2158479 1 438 0.022130013831258646 723 16 "response regulator in two-component regulatory system with BaeS" +BW25113_2079__5prime baeR__5prime 0 2157559 2157756 1 183 0.045454545454545456 198 9 "response regulator in two-component regulatory system with BaeS" +BW25113_2079__3prime baeR__3prime 0 2158480 2158677 1 169 0.03535353535353535 198 7 "response regulator in two-component regulatory system with BaeS" +2158497_2158577 2158497_2158577 0 2158498 2158577 1 151 0.075 80 6 "2158497_2158577" +2158497_2158577__5prime 2158497_2158577__5prime 0 2158300 2158497 1 196 0.020202020202020204 198 4 "2158497_2158577" +2158497_2158577__3prime 2158497_2158577__3prime 0 2158578 2158775 1 461 0.10101010101010101 198 20 "2158497_2158577" +BW25113_2080 yegP 0 2158670 2159002 1 964 0.10510510510510511 333 35 "UPF0339 family protein" +BW25113_2080__5prime yegP__5prime 0 2158472 2158669 1 169 0.03535353535353535 198 7 "UPF0339 family protein" +BW25113_2080__3prime yegP__3prime 0 2159003 2159200 1 770 0.12121212121212122 198 24 "UPF0339 family protein" +BW25113_2081 yegQ 0 2159149 2160510 1 2281 0.07709251101321586 1362 105 "putative peptidase" +BW25113_2081__5prime yegQ__5prime 0 2158951 2159148 1 729 0.10101010101010101 198 20 "putative peptidase" +BW25113_2081__3prime yegQ__3prime 0 2160511 2160708 1 90 0.025252525252525252 198 5 "putative peptidase" +BW25113_4438 cyaR 0 2160595 2160681 1 90 0.05747126436781609 87 5 "sRNA antisense regulator of ompX mRNA instability and Hfq-dependent and cAMP-induced" +BW25113_4438__5prime cyaR__5prime 0 2160397 2160594 1 484 0.050505050505050504 198 10 "sRNA antisense regulator of ompX mRNA instability and Hfq-dependent and cAMP-induced" +BW25113_4438__3prime cyaR__3prime 0 2160682 2160879 1 75 0.020202020202020204 198 4 "sRNA antisense regulator of ompX mRNA instability and Hfq-dependent and cAMP-induced" +2160678_2161307 2160678_2161307 0 2160679 2161307 -1 799 0.06836248012718601 629 43 "2160678_2161307" +2160678_2161307__5prime 2160678_2161307__5prime 0 2161308 2161505 -1 1346 0.3434343434343434 198 68 "2160678_2161307" +2160678_2161307__3prime 2160678_2161307__3prime 0 2160481 2160678 -1 105 0.030303030303030304 198 6 "2160678_2161307" +BW25113_2082 ogrK 0 2160783 2161001 -1 181 0.0593607305936073 219 13 "positive regulator of P2 growth (insertion of P2 ogr gene into the chromosome)" +BW25113_2082__5prime ogrK__5prime 0 2161002 2161199 -1 103 0.030303030303030304 198 6 "positive regulator of P2 growth (insertion of P2 ogr gene into the chromosome)" +BW25113_2082__3prime ogrK__3prime 0 2160585 2160782 -1 90 0.025252525252525252 198 5 "positive regulator of P2 growth (insertion of P2 ogr gene into the chromosome)" +BW25113_2083 yegZ 0 2161083 2161295 -1 497 0.13615023474178403 213 29 "2161082_2161295" +BW25113_2083__5prime yegZ__5prime 0 2161296 2161493 -1 1157 0.30303030303030304 198 60 "2161082_2161295" +BW25113_2083__3prime yegZ__3prime 0 2160885 2161082 -1 35 0.025252525252525252 198 5 "2161082_2161295" +BW25113_2085 yegR 0 2161470 2161787 -1 3054 0.27044025157232704 318 86 "uncharacterized protein" +BW25113_2085__5prime yegR__5prime 0 2161788 2161985 -1 290 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_2085__3prime yegR__3prime 0 2161272 2161469 -1 1260 0.32323232323232326 198 64 "uncharacterized protein" +BW25113_2086 yegS 0 2162193 2163092 1 5109 0.22333333333333333 900 201 "phosphatidylglycerol kinase and metal-dependent" +BW25113_2086__5prime yegS__5prime 0 2161995 2162192 1 2665 0.30808080808080807 198 61 "phosphatidylglycerol kinase and metal-dependent" +BW25113_2086__3prime yegS__3prime 0 2163093 2163290 1 965 0.23737373737373738 198 47 "phosphatidylglycerol kinase and metal-dependent" +2163130_2163164 2163130_2163164 0 2163131 2163164 1 126 0.23529411764705882 34 8 "2163130_2163164" +2163130_2163164__5prime 2163130_2163164__5prime 0 2162933 2163130 1 1542 0.2777777777777778 198 55 "2163130_2163164" +2163130_2163164__3prime 2163130_2163164__3prime 0 2163165 2163362 1 816 0.17676767676767677 198 35 "2163130_2163164" +BW25113_4498 gatR 0 2163174 2165208 -1 7841 0.20933660933660933 2035 426 "2163173_2165208" +BW25113_4498__5prime gatR__5prime 0 2165209 2165406 -1 248 0.045454545454545456 198 9 "2163173_2165208" +BW25113_4498__3prime gatR__3prime 0 2162976 2163173 -1 1788 0.3181818181818182 198 63 "2163173_2165208" +BW25113_2088 insE1 0 2163717 2164016 1 605 0.18 300 54 "IS3 transposase A" +BW25113_2088__5prime insE1__5prime 0 2163519 2163716 1 818 0.26262626262626265 198 52 "IS3 transposase A" +BW25113_2088__3prime insE1__3prime 0 2164017 2164214 1 564 0.23232323232323232 198 46 "IS3 transposase A" +BW25113_2089 insF1 0 2164013 2164879 1 3994 0.26528258362168394 867 230 "IS3 transposase B" +BW25113_2089__5prime insF1__5prime 0 2163815 2164012 1 302 0.16666666666666666 198 33 "IS3 transposase B" +BW25113_2089__3prime insF1__3prime 0 2164880 2165077 1 176 0.045454545454545456 198 9 "IS3 transposase B" +BW25113_2091 gatD 0 2165314 2166354 -1 3710 0.16138328530259366 1041 168 "galactitol-1-phosphate dehydrogenase and Zn-dependent and NAD(P)-binding" +BW25113_2091__5prime gatD__5prime 0 2166355 2166552 -1 641 0.12121212121212122 198 24 "galactitol-1-phosphate dehydrogenase and Zn-dependent and NAD(P)-binding" +BW25113_2091__3prime gatD__3prime 0 2165116 2165313 -1 198 0.06060606060606061 198 12 "galactitol-1-phosphate dehydrogenase and Zn-dependent and NAD(P)-binding" +BW25113_2092 gatC 0 2166402 2167757 -1 3658 0.11799410029498525 1356 160 "galactitol PTS permease-GatC subunit" +BW25113_2092__5prime gatC__5prime 0 2167758 2167955 -1 949 0.1919191919191919 198 38 "galactitol PTS permease-GatC subunit" +BW25113_2092__3prime gatC__3prime 0 2166204 2166401 -1 837 0.18181818181818182 198 36 "galactitol PTS permease-GatC subunit" +BW25113_2093 gatB 0 2167761 2168045 -1 1236 0.16842105263157894 285 48 "galactitol-specific enzyme IIB component of PTS" +BW25113_2093__5prime gatB__5prime 0 2168046 2168243 -1 547 0.14646464646464646 198 29 "galactitol-specific enzyme IIB component of PTS" +BW25113_2093__3prime gatB__3prime 0 2167563 2167760 -1 1326 0.23232323232323232 198 46 "galactitol-specific enzyme IIB component of PTS" +BW25113_2094 gatA 0 2168076 2168528 -1 3075 0.2251655629139073 453 102 "galactitol-specific enzyme IIA component of PTS" +BW25113_2094__5prime gatA__5prime 0 2168529 2168726 -1 3298 0.30808080808080807 198 61 "galactitol-specific enzyme IIA component of PTS" +BW25113_2094__3prime gatA__3prime 0 2167878 2168075 -1 683 0.13636363636363635 198 27 "galactitol-specific enzyme IIA component of PTS" +BW25113_2095 gatZ 0 2168538 2169800 -1 4347 0.10372129849564529 1263 131 "D-tagatose 1 and 6-bisphosphate aldolase 2 and subunit" +BW25113_2095__5prime gatZ__5prime 0 2169801 2169998 -1 163 0.04040404040404041 198 8 "D-tagatose 1 and 6-bisphosphate aldolase 2 and subunit" +BW25113_2095__3prime gatZ__3prime 0 2168340 2168537 -1 2510 0.29292929292929293 198 58 "D-tagatose 1 and 6-bisphosphate aldolase 2 and subunit" +BW25113_2096 gatY 0 2169829 2170683 -1 752 0.0608187134502924 855 52 "D-tagatose 1 and 6-bisphosphate aldolase 2 and catalytic subunit" +BW25113_2096__5prime gatY__5prime 0 2170684 2170881 -1 27 0.020202020202020204 198 4 "D-tagatose 1 and 6-bisphosphate aldolase 2 and catalytic subunit" +BW25113_2096__3prime gatY__3prime 0 2169631 2169828 -1 334 0.09090909090909091 198 18 "D-tagatose 1 and 6-bisphosphate aldolase 2 and catalytic subunit" +2170170_2171428 2170170_2171428 0 2170171 2171428 1 1302 0.07313195548489666 1258 92 "2170170_2171428" +2170170_2171428__5prime 2170170_2171428__5prime 0 2169973 2170170 1 36 0.025252525252525252 198 5 "2170170_2171428" +2170170_2171428__3prime 2170170_2171428__3prime 0 2171429 2171626 1 427 0.10101010101010101 198 20 "2170170_2171428" +2170886_2170963 2170886_2170963 0 2170887 2170963 1 191 0.1038961038961039 77 8 "2170886_2170963" +2170886_2170963__5prime 2170886_2170963__5prime 0 2170689 2170886 1 39 0.025252525252525252 198 5 "2170886_2170963" +2170886_2170963__3prime 2170886_2170963__3prime 0 2170964 2171161 1 304 0.12121212121212122 198 24 "2170886_2170963" +BW25113_2097 fbaB 0 2170991 2172043 -1 1766 0.08831908831908832 1053 93 "fructose-bisphosphate aldolase class I" +BW25113_2097__5prime fbaB__5prime 0 2172044 2172241 -1 43 0.005050505050505051 198 1 "fructose-bisphosphate aldolase class I" +BW25113_2097__3prime fbaB__3prime 0 2170793 2170990 -1 332 0.10606060606060606 198 21 "fructose-bisphosphate aldolase class I" +BW25113_2098 yegT 0 2172300 2173577 1 1891 0.06572769953051644 1278 84 "nucleoside transporter and low affinity" +BW25113_2098__5prime yegT__5prime 0 2172102 2172299 1 9 0.005050505050505051 198 1 "nucleoside transporter and low affinity" +BW25113_2098__3prime yegT__3prime 0 2173578 2173775 1 486 0.11616161616161616 198 23 "nucleoside transporter and low affinity" +BW25113_2099 yegU 0 2173574 2174578 1 1740 0.08756218905472637 1005 88 "ADP-ribosylglycohydrolase family protein" +BW25113_2099__5prime yegU__5prime 0 2173376 2173573 1 285 0.050505050505050504 198 10 "ADP-ribosylglycohydrolase family protein" +BW25113_2099__3prime yegU__3prime 0 2174579 2174776 1 372 0.05555555555555555 198 11 "ADP-ribosylglycohydrolase family protein" +BW25113_2100 yegV 0 2174575 2175540 1 1088 0.057971014492753624 966 56 "putative kinase" +BW25113_2100__5prime yegV__5prime 0 2174377 2174574 1 416 0.08585858585858586 198 17 "putative kinase" +BW25113_2100__3prime yegV__3prime 0 2175541 2175738 1 342 0.09090909090909091 198 18 "putative kinase" +BW25113_2101 yegW 0 2175514 2176260 -1 793 0.05488621151271754 747 41 "putative DNA-binding transcriptional regulator" +BW25113_2101__5prime yegW__5prime 0 2176261 2176458 -1 434 0.11616161616161616 198 23 "putative DNA-binding transcriptional regulator" +BW25113_2101__3prime yegW__3prime 0 2175316 2175513 -1 153 0.030303030303030304 198 6 "putative DNA-binding transcriptional regulator" +BW25113_2102 yegX 0 2176312 2177130 -1 831 0.06349206349206349 819 52 "putative family 25 glycosyl hydrolase" +BW25113_2102__5prime yegX__5prime 0 2177131 2177328 -1 498 0.11616161616161616 198 23 "putative family 25 glycosyl hydrolase" +BW25113_2102__3prime yegX__3prime 0 2176114 2176311 -1 281 0.06060606060606061 198 12 "putative family 25 glycosyl hydrolase" +BW25113_2103 thiD 0 2177195 2177995 -1 1341 0.08863920099875156 801 71 "bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase" +BW25113_2103__5prime thiD__5prime 0 2177996 2178193 -1 170 0.04040404040404041 198 8 "bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase" +BW25113_2103__3prime thiD__3prime 0 2176997 2177194 -1 307 0.09090909090909091 198 18 "bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase" +BW25113_2104 thiM 0 2177992 2178780 -1 1797 0.06844106463878327 789 54 "hydoxyethylthiazole kinase" +BW25113_2104__5prime thiM__5prime 0 2178781 2178978 -1 626 0.06060606060606061 198 12 "hydoxyethylthiazole kinase" +BW25113_2104__3prime thiM__3prime 0 2177794 2177991 -1 154 0.030303030303030304 198 6 "hydoxyethylthiazole kinase" +BW25113_2105 rcnR 0 2179003 2179275 -1 374 0.06227106227106227 273 17 "transcriptional repressor of rcnA" +BW25113_2105__5prime rcnR__5prime 0 2179276 2179473 -1 51 0.025252525252525252 198 5 "transcriptional repressor of rcnA" +BW25113_2105__3prime rcnR__3prime 0 2178805 2179002 -1 626 0.06060606060606061 198 12 "transcriptional repressor of rcnA" +BW25113_2106 rcnA 0 2179396 2180220 1 2270 0.13575757575757577 825 112 "membrane protein conferring nickel and cobalt resistance" +BW25113_2106__5prime rcnA__5prime 0 2179198 2179395 1 85 0.030303030303030304 198 6 "membrane protein conferring nickel and cobalt resistance" +BW25113_2106__3prime rcnA__3prime 0 2180221 2180418 1 332 0.11616161616161616 198 23 "membrane protein conferring nickel and cobalt resistance" +BW25113_2107 rcnB 0 2180439 2180777 1 4151 0.3333333333333333 339 113 "periplasmic modulator of Ni and Co efflux" +BW25113_2107__5prime rcnB__5prime 0 2180241 2180438 1 317 0.13131313131313133 198 26 "periplasmic modulator of Ni and Co efflux" +BW25113_2107__3prime rcnB__3prime 0 2180778 2180975 1 365 0.1414141414141414 198 28 "periplasmic modulator of Ni and Co efflux" +BW25113_2108 yehA 0 2180859 2181893 -1 5241 0.21545893719806763 1035 223 "putative fimbrial-like adhesin protein" +BW25113_2108__5prime yehA__5prime 0 2181894 2182091 -1 588 0.17676767676767677 198 35 "putative fimbrial-like adhesin protein" +BW25113_2108__3prime yehA__3prime 0 2180661 2180858 -1 1294 0.22727272727272727 198 45 "putative fimbrial-like adhesin protein" +BW25113_2109 yehB 0 2181909 2184389 -1 19795 0.2607819427650141 2481 647 "putative outer membrane protein" +BW25113_2109__5prime yehB__5prime 0 2184390 2184587 -1 85 0.045454545454545456 198 9 "putative outer membrane protein" +BW25113_2109__3prime yehB__3prime 0 2181711 2181908 -1 1425 0.3282828282828283 198 65 "putative outer membrane protein" +BW25113_2110 yehC 0 2184405 2185124 -1 1217 0.07083333333333333 720 51 "putative periplasmic pilin chaperone" +BW25113_2110__5prime yehC__5prime 0 2185125 2185322 -1 772 0.23232323232323232 198 46 "putative periplasmic pilin chaperone" +BW25113_2110__3prime yehC__3prime 0 2184207 2184404 -1 958 0.26262626262626265 198 52 "putative periplasmic pilin chaperone" +BW25113_2111 yehD 0 2185159 2185701 -1 2627 0.22099447513812154 543 120 "putative fimbrial-like adhesin protein" +BW25113_2111__5prime yehD__5prime 0 2185702 2185899 -1 0 0.0 198 0 "putative fimbrial-like adhesin protein" +BW25113_2111__3prime yehD__3prime 0 2184961 2185158 -1 311 0.0707070707070707 198 14 "putative fimbrial-like adhesin protein" +BW25113_2112 yehE 0 2185994 2186275 -1 2240 0.2978723404255319 282 84 "DUF2574 family protein" +BW25113_2112__5prime yehE__5prime 0 2186276 2186473 -1 1005 0.19696969696969696 198 39 "DUF2574 family protein" +BW25113_2112__3prime yehE__3prime 0 2185796 2185993 -1 0 0.0 198 0 "DUF2574 family protein" +BW25113_2113 mrp 0 2186538 2187647 -1 1746 0.06666666666666667 1110 74 "antiporter inner membrane protein" +BW25113_2113__5prime mrp__5prime 0 2187648 2187845 -1 5 0.005050505050505051 198 1 "antiporter inner membrane protein" +BW25113_2113__3prime mrp__3prime 0 2186340 2186537 -1 488 0.10606060606060606 198 21 "antiporter inner membrane protein" +BW25113_2114 metG 0 2187779 2189812 1 393 0.008357915437561455 2034 17 "methionyl-tRNA synthetase" +BW25113_2114__5prime metG__5prime 0 2187581 2187778 1 31 0.010101010101010102 198 2 "methionyl-tRNA synthetase" +BW25113_2114__3prime metG__3prime 0 2189813 2190010 1 29 0.015151515151515152 198 3 "methionyl-tRNA synthetase" +BW25113_4499 yehH 0 2189953 2193748 1 10144 0.10721812434141201 3796 407 "2189952_2193748" +BW25113_4499__5prime yehH__5prime 0 2189755 2189952 1 29 0.015151515151515152 198 3 "2189952_2193748" +BW25113_4499__3prime yehH__3prime 0 2193749 2193946 1 92 0.020202020202020204 198 4 "2189952_2193748" +BW25113_2118 yehI 0 2193758 2197390 1 6839 0.08037434627030003 3633 292 "DUF4132 domain-containing protein" +BW25113_2118__5prime yehI__5prime 0 2193560 2193757 1 730 0.06565656565656566 198 13 "DUF4132 domain-containing protein" +BW25113_2118__3prime yehI__3prime 0 2197391 2197588 1 890 0.2676767676767677 198 53 "DUF4132 domain-containing protein" +BW25113_4541 yehK 0 2197451 2197768 1 1017 0.17295597484276728 318 55 "uncharacterized protein" +BW25113_4541__5prime yehK__5prime 0 2197253 2197450 1 496 0.1717171717171717 198 34 "uncharacterized protein" +BW25113_4541__3prime yehK__3prime 0 2197769 2197966 1 912 0.18686868686868688 198 37 "uncharacterized protein" +BW25113_2119 yehL 0 2198075 2199163 1 2575 0.08999081726354453 1089 98 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_2119__5prime yehL__5prime 0 2197877 2198074 1 600 0.12121212121212122 198 24 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_2119__3prime yehL__3prime 0 2199164 2199361 1 235 0.030303030303030304 198 6 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_2120 yehM 0 2199174 2201453 1 3392 0.06754385964912281 2280 154 "uncharacterized protein" +BW25113_2120__5prime yehM__5prime 0 2198976 2199173 1 285 0.05555555555555555 198 11 "uncharacterized protein" +BW25113_2120__3prime yehM__3prime 0 2201454 2201651 1 131 0.050505050505050504 198 10 "uncharacterized protein" +BW25113_2121 yehP 0 2201446 2202582 1 1540 0.056288478452066845 1137 64 "VMA domain putative YehL ATPase stimulator" +BW25113_2121__5prime yehP__5prime 0 2201248 2201445 1 344 0.0707070707070707 198 14 "VMA domain putative YehL ATPase stimulator" +BW25113_2121__3prime yehP__3prime 0 2202583 2202780 1 386 0.12626262626262627 198 25 "VMA domain putative YehL ATPase stimulator" +BW25113_2122 yehQ 0 2202579 2204579 1 3509 0.07496251874062969 2001 150 "2202578_2204579" +BW25113_2122__5prime yehQ__5prime 0 2202381 2202578 1 230 0.10606060606060606 198 21 "2202578_2204579" +BW25113_2122__3prime yehQ__3prime 0 2204580 2204777 1 1874 0.21717171717171718 198 43 "2202578_2204579" +BW25113_2123 yehR 0 2204704 2205165 1 618 0.06493506493506493 462 30 "lipoprotein and DUF1307 family" +BW25113_2123__5prime yehR__5prime 0 2204506 2204703 1 1548 0.1717171717171717 198 34 "lipoprotein and DUF1307 family" +BW25113_2123__3prime yehR__3prime 0 2205166 2205363 1 144 0.020202020202020204 198 4 "lipoprotein and DUF1307 family" +BW25113_2124 yehS 0 2205205 2205675 -1 593 0.03184713375796178 471 15 "DUF1456 family protein" +BW25113_2124__5prime yehS__5prime 0 2205676 2205873 -1 355 0.06060606060606061 198 12 "DUF1456 family protein" +BW25113_2124__3prime yehS__3prime 0 2205007 2205204 -1 151 0.010101010101010102 198 2 "DUF1456 family protein" +BW25113_2125 yehT 0 2205722 2206441 -1 1804 0.08611111111111111 720 62 "putative response regulator in two-component system withYehU" +BW25113_2125__5prime yehT__5prime 0 2206442 2206639 -1 178 0.06060606060606061 198 12 "putative response regulator in two-component system withYehU" +BW25113_2125__3prime yehT__3prime 0 2205524 2205721 -1 100 0.03535353535353535 198 7 "putative response regulator in two-component system withYehU" +BW25113_2126 yehU 0 2206438 2208123 -1 2195 0.0527876631079478 1686 89 "inner membrane putative sensory kinase in two-component system with YehT" +BW25113_2126__5prime yehU__5prime 0 2208124 2208321 -1 140 0.03535353535353535 198 7 "inner membrane putative sensory kinase in two-component system with YehT" +BW25113_2126__3prime yehU__3prime 0 2206240 2206437 -1 346 0.07575757575757576 198 15 "inner membrane putative sensory kinase in two-component system with YehT" +BW25113_2127 mlrA 0 2208345 2209076 1 1511 0.07377049180327869 732 54 "transcriptional activator of csgD and csgBA" +BW25113_2127__5prime mlrA__5prime 0 2208147 2208344 1 157 0.04040404040404041 198 8 "transcriptional activator of csgD and csgBA" +BW25113_2127__3prime mlrA__3prime 0 2209077 2209274 1 367 0.05555555555555555 198 11 "transcriptional activator of csgD and csgBA" +BW25113_4542 yohO 0 2209136 2209243 1 25 0.027777777777777776 108 3 "putative membrane protein" +BW25113_4542__5prime yohO__5prime 0 2208938 2209135 1 698 0.1111111111111111 198 22 "putative membrane protein" +BW25113_4542__3prime yohO__3prime 0 2209244 2209441 1 76 0.04040404040404041 198 8 "putative membrane protein" +BW25113_2128 yehW 0 2209224 2209955 -1 774 0.06284153005464481 732 46 "inner membrane putative ABC superfamily transporter permease" +BW25113_2128__5prime yehW__5prime 0 2209956 2210153 -1 283 0.06060606060606061 198 12 "inner membrane putative ABC superfamily transporter permease" +BW25113_2128__3prime yehW__3prime 0 2209026 2209223 -1 536 0.06565656565656566 198 13 "inner membrane putative ABC superfamily transporter permease" +BW25113_2129 yehX 0 2209960 2210886 -1 1244 0.06472491909385113 927 60 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_2129__5prime yehX__5prime 0 2210887 2211084 -1 190 0.05555555555555555 198 11 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_2129__3prime yehX__3prime 0 2209762 2209959 -1 398 0.08585858585858586 198 17 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_2130 yehY 0 2210879 2212036 -1 1173 0.04317789291882556 1158 50 "inner membrane putative ABC superfamily transporter permease" +BW25113_2130__5prime yehY__5prime 0 2212037 2212234 -1 286 0.05555555555555555 198 11 "inner membrane putative ABC superfamily transporter permease" +BW25113_2130__3prime yehY__3prime 0 2210681 2210878 -1 53 0.03535353535353535 198 7 "inner membrane putative ABC superfamily transporter permease" +BW25113_2131 osmF 0 2212043 2212960 -1 1476 0.07625272331154684 918 70 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_2131__5prime osmF__5prime 0 2212961 2213158 -1 105 0.045454545454545456 198 9 "putative ABC superfamily transporter periplasmic-binding protein" +BW25113_2131__3prime osmF__3prime 0 2211845 2212042 -1 181 0.015151515151515152 198 3 "putative ABC superfamily transporter periplasmic-binding protein" +2213103_2213137 2213103_2213137 0 2213104 2213137 1 20 0.058823529411764705 34 2 "2213103_2213137" +2213103_2213137__5prime 2213103_2213137__5prime 0 2212906 2213103 1 187 0.050505050505050504 198 10 "2213103_2213137" +2213103_2213137__3prime 2213103_2213137__3prime 0 2213138 2213335 1 208 0.03535353535353535 198 7 "2213103_2213137" +BW25113_2132 bglX 0 2213171 2215468 -1 3172 0.072236727589208 2298 166 "beta-D-glucoside glucohydrolase and periplasmic" +BW25113_2132__5prime bglX__5prime 0 2215469 2215666 -1 115 0.025252525252525252 198 5 "beta-D-glucoside glucohydrolase and periplasmic" +BW25113_2132__3prime bglX__3prime 0 2212973 2213170 -1 111 0.050505050505050504 198 10 "beta-D-glucoside glucohydrolase and periplasmic" +BW25113_2133 dld 0 2215664 2217379 1 2247 0.06701631701631702 1716 115 "D-lactate dehydrogenase and FAD-binding and NADH independent" +BW25113_2133__5prime dld__5prime 0 2215466 2215663 1 115 0.025252525252525252 198 5 "D-lactate dehydrogenase and FAD-binding and NADH independent" +BW25113_2133__3prime dld__3prime 0 2217380 2217577 1 260 0.06060606060606061 198 12 "D-lactate dehydrogenase and FAD-binding and NADH independent" +2217383_2217411 2217383_2217411 0 2217384 2217411 1 55 0.14285714285714285 28 4 "2217383_2217411" +2217383_2217411__5prime 2217383_2217411__5prime 0 2217186 2217383 1 475 0.10606060606060606 198 21 "2217383_2217411" +2217383_2217411__3prime 2217383_2217411__3prime 0 2217412 2217609 1 249 0.0707070707070707 198 14 "2217383_2217411" +BW25113_2134 pbpG 0 2217417 2218349 -1 1414 0.06430868167202572 933 60 "D-alanyl-D-alanine endopeptidase" +BW25113_2134__5prime pbpG__5prime 0 2218350 2218547 -1 298 0.07575757575757576 198 15 "D-alanyl-D-alanine endopeptidase" +BW25113_2134__3prime pbpG__3prime 0 2217219 2217416 -1 530 0.12626262626262627 198 25 "D-alanyl-D-alanine endopeptidase" +BW25113_2135 yohC 0 2218523 2219110 -1 1986 0.13095238095238096 588 77 "Yip1 family inner membrane protein" +BW25113_2135__5prime yohC__5prime 0 2219111 2219308 -1 199 0.045454545454545456 198 9 "Yip1 family inner membrane protein" +BW25113_2135__3prime yohC__3prime 0 2218325 2218522 -1 298 0.07575757575757576 198 15 "Yip1 family inner membrane protein" +BW25113_2136 yohD 0 2219280 2219858 1 901 0.0535405872193437 579 31 "DedA family inner membrane protein" +BW25113_2136__5prime yohD__5prime 0 2219082 2219279 1 79 0.030303030303030304 198 6 "DedA family inner membrane protein" +BW25113_2136__3prime yohD__3prime 0 2219859 2220056 1 501 0.12121212121212122 198 24 "DedA family inner membrane protein" +2219863_2219947 2219863_2219947 0 2219864 2219947 1 329 0.21428571428571427 84 18 "2219863_2219947" +2219863_2219947__5prime 2219863_2219947__5prime 0 2219666 2219863 1 379 0.050505050505050504 198 10 "2219863_2219947" +2219863_2219947__3prime 2219863_2219947__3prime 0 2219948 2220145 1 271 0.06060606060606061 198 12 "2219863_2219947" +BW25113_2137 yohF 0 2219988 2220749 -1 1577 0.09317585301837271 762 71 "putative oxidoreductase" +BW25113_2137__5prime yohF__5prime 0 2220750 2220947 -1 272 0.08585858585858586 198 17 "putative oxidoreductase" +BW25113_2137__3prime yohF__3prime 0 2219790 2219987 -1 424 0.10101010101010101 198 20 "putative oxidoreductase" +BW25113_2139 mdtQ 0 2220802 2222237 -1 2573 0.09192200557103064 1436 132 "2220801_2222237" +BW25113_2139__5prime mdtQ__5prime 0 2222238 2222435 -1 724 0.13636363636363635 198 27 "2220801_2222237" +BW25113_2139__3prime mdtQ__3prime 0 2220604 2220801 -1 254 0.0707070707070707 198 14 "2220801_2222237" +BW25113_4679 yohP 0 2222461 2222544 1 211 0.11904761904761904 84 10 "uncharacterized protein" +BW25113_4679__5prime yohP__5prime 0 2222263 2222460 1 811 0.14646464646464646 198 29 "uncharacterized protein" +BW25113_4679__3prime yohP__3prime 0 2222545 2222742 1 1112 0.2474747474747475 198 49 "uncharacterized protein" +BW25113_2140 dusC 0 2222917 2223864 -1 3314 0.12236286919831224 948 116 "tRNA-dihydrouridine synthase C" +BW25113_2140__5prime dusC__5prime 0 2223865 2224062 -1 278 0.050505050505050504 198 10 "tRNA-dihydrouridine synthase C" +BW25113_2140__3prime dusC__3prime 0 2222719 2222916 -1 1297 0.2777777777777778 198 55 "tRNA-dihydrouridine synthase C" +2223820_2224026 2223820_2224026 0 2223821 2224026 1 710 0.10194174757281553 206 21 "2223820_2224026" +2223820_2224026__5prime 2223820_2224026__5prime 0 2223623 2223820 1 169 0.050505050505050504 198 10 "2223820_2224026" +2223820_2224026__3prime 2223820_2224026__3prime 0 2224027 2224224 1 450 0.09090909090909091 198 18 "2223820_2224026" +BW25113_2141 yohJ 0 2224103 2224501 1 588 0.06265664160401002 399 25 "UPF0299 family inner membrane protein" +BW25113_2141__5prime yohJ__5prime 0 2223905 2224102 1 421 0.07575757575757576 198 15 "UPF0299 family inner membrane protein" +BW25113_2141__3prime yohJ__3prime 0 2224502 2224699 1 443 0.12121212121212122 198 24 "UPF0299 family inner membrane protein" +BW25113_2142 yohK 0 2224498 2225193 1 1080 0.08620689655172414 696 60 "LrgB family inner membrane protein" +BW25113_2142__5prime yohK__5prime 0 2224300 2224497 1 326 0.06565656565656566 198 13 "LrgB family inner membrane protein" +BW25113_2142__3prime yohK__3prime 0 2225194 2225391 1 353 0.09595959595959595 198 19 "LrgB family inner membrane protein" +BW25113_2143 cdd 0 2225323 2226207 1 1233 0.06779661016949153 885 60 "cytidine/deoxycytidine deaminase" +BW25113_2143__5prime cdd__5prime 0 2225125 2225322 1 305 0.08585858585858586 198 17 "cytidine/deoxycytidine deaminase" +BW25113_2143__3prime cdd__3prime 0 2226208 2226405 1 499 0.07575757575757576 198 15 "cytidine/deoxycytidine deaminase" +2226214_2226248 2226214_2226248 0 2226215 2226248 1 0 0.0 34 0 "2226214_2226248" +2226214_2226248__5prime 2226214_2226248__5prime 0 2226017 2226214 1 464 0.05555555555555555 198 11 "2226214_2226248" +2226214_2226248__3prime 2226214_2226248__3prime 0 2226249 2226446 1 703 0.13636363636363635 198 27 "2226214_2226248" +BW25113_2144 sanA 0 2226357 2227076 1 6696 0.29305555555555557 720 211 "vancomycin high temperature exclusion protein and DUF218 superfamily protein" +BW25113_2144__5prime sanA__5prime 0 2226159 2226356 1 306 0.050505050505050504 198 10 "vancomycin high temperature exclusion protein and DUF218 superfamily protein" +BW25113_2144__3prime sanA__3prime 0 2227077 2227274 1 903 0.17676767676767677 198 35 "vancomycin high temperature exclusion protein and DUF218 superfamily protein" +BW25113_2145 yeiS 0 2227079 2227318 1 926 0.15416666666666667 240 37 "DUF2542 family protein" +BW25113_2145__5prime yeiS__5prime 0 2226881 2227078 1 1318 0.24242424242424243 198 48 "DUF2542 family protein" +BW25113_2145__3prime yeiS__3prime 0 2227319 2227516 1 84 0.04040404040404041 198 8 "DUF2542 family protein" +BW25113_2146 preT 0 2227512 2228750 1 5808 0.12187247780468119 1239 151 "dihydropyrimidine dehydrogenase and NADH-dependent and subunit N" +BW25113_2146__5prime preT__5prime 0 2227314 2227511 1 84 0.04040404040404041 198 8 "dihydropyrimidine dehydrogenase and NADH-dependent and subunit N" +BW25113_2146__3prime preT__3prime 0 2228751 2228948 1 119 0.050505050505050504 198 10 "dihydropyrimidine dehydrogenase and NADH-dependent and subunit N" +BW25113_2147 preA 0 2228744 2229979 1 2510 0.09466019417475728 1236 117 "dihydropyrimidine dehydrogenase and NADH-dependent and subunit C" +BW25113_2147__5prime preA__5prime 0 2228546 2228743 1 539 0.12121212121212122 198 24 "dihydropyrimidine dehydrogenase and NADH-dependent and subunit C" +BW25113_2147__3prime preA__3prime 0 2229980 2230177 1 17 0.015151515151515152 198 3 "dihydropyrimidine dehydrogenase and NADH-dependent and subunit C" +2230012_2230162 2230012_2230162 0 2230013 2230162 1 0 0.0 150 0 "2230012_2230162" +2230012_2230162__5prime 2230012_2230162__5prime 0 2229815 2230012 1 539 0.10101010101010101 198 20 "2230012_2230162" +2230012_2230162__3prime 2230012_2230162__3prime 0 2230163 2230360 1 444 0.11616161616161616 198 23 "2230012_2230162" +BW25113_2148 mglC 0 2230222 2231232 -1 3960 0.142433234421365 1011 144 "methyl-galactoside transporter subunit" +BW25113_2148__5prime mglC__5prime 0 2231233 2231430 -1 1094 0.18686868686868688 198 37 "methyl-galactoside transporter subunit" +BW25113_2148__3prime mglC__3prime 0 2230024 2230221 -1 25 0.020202020202020204 198 4 "methyl-galactoside transporter subunit" +BW25113_2149 mglA 0 2231248 2232768 -1 12246 0.23865877712031558 1521 363 "fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components" +BW25113_2149__5prime mglA__5prime 0 2232769 2232966 -1 4908 0.30808080808080807 198 61 "fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components" +BW25113_2149__3prime mglA__3prime 0 2231050 2231247 -1 985 0.20707070707070707 198 41 "fused methyl-galactoside transporter subunits of ABC superfamily: ATP-binding components" +BW25113_2150 mglB 0 2232829 2233827 -1 3802 0.12012012012012012 999 120 "methyl-galactoside transporter subunit" +BW25113_2150__5prime mglB__5prime 0 2233828 2234025 -1 113 0.04040404040404041 198 8 "methyl-galactoside transporter subunit" +BW25113_2150__3prime mglB__3prime 0 2232631 2232828 -1 4772 0.3181818181818182 198 63 "methyl-galactoside transporter subunit" +BW25113_2151 galS 0 2234107 2235147 -1 1445 0.06243996157540826 1041 65 "galactose-and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor" +BW25113_2151__5prime galS__5prime 0 2235148 2235345 -1 82 0.020202020202020204 198 4 "galactose-and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor" +BW25113_2151__3prime galS__3prime 0 2233909 2234106 -1 12 0.010101010101010102 198 2 "galactose-and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor" +BW25113_2152 yeiB 0 2235289 2236446 -1 1278 0.06044905008635579 1158 70 "DUF418 family putative inner membrane protein" +BW25113_2152__5prime yeiB__5prime 0 2236447 2236644 -1 67 0.010101010101010102 198 2 "DUF418 family putative inner membrane protein" +BW25113_2152__3prime yeiB__3prime 0 2235091 2235288 -1 39 0.025252525252525252 198 5 "DUF418 family putative inner membrane protein" +BW25113_2153 folE 0 2236463 2237131 -1 70 0.005979073243647235 669 4 "GTP cyclohydrolase I" +BW25113_2153__5prime folE__5prime 0 2237132 2237329 -1 142 0.045454545454545456 198 9 "GTP cyclohydrolase I" +BW25113_2153__3prime folE__3prime 0 2236265 2236462 -1 101 0.025252525252525252 198 5 "GTP cyclohydrolase I" +BW25113_2154 yeiG 0 2237389 2238225 1 1448 0.0967741935483871 837 81 "S-formylglutathione hydrolase" +BW25113_2154__5prime yeiG__5prime 0 2237191 2237388 1 96 0.03535353535353535 198 7 "S-formylglutathione hydrolase" +BW25113_2154__3prime yeiG__3prime 0 2238226 2238423 1 388 0.07575757575757576 198 15 "S-formylglutathione hydrolase" +BW25113_2155 cirA 0 2238257 2240248 -1 3459 0.07028112449799197 1992 140 "colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter" +BW25113_2155__5prime cirA__5prime 0 2240249 2240446 -1 101 0.015151515151515152 198 3 "colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter" +BW25113_2155__3prime cirA__3prime 0 2238059 2238256 -1 243 0.05555555555555555 198 11 "colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter" +BW25113_2156 lysP 0 2240542 2242011 -1 3906 0.11156462585034013 1470 164 "lysine transporter" +BW25113_2156__5prime lysP__5prime 0 2242012 2242209 -1 174 0.05555555555555555 198 11 "lysine transporter" +BW25113_2156__3prime lysP__3prime 0 2240344 2240541 -1 28 0.005050505050505051 198 1 "lysine transporter" +BW25113_2157 yeiE 0 2242216 2243097 -1 1905 0.07596371882086168 882 67 "putative DNA-binding transcriptional regulator" +BW25113_2157__5prime yeiE__5prime 0 2243098 2243295 -1 408 0.13636363636363635 198 27 "putative DNA-binding transcriptional regulator" +BW25113_2157__3prime yeiE__3prime 0 2242018 2242215 -1 174 0.05555555555555555 198 11 "putative DNA-binding transcriptional regulator" +BW25113_2158 yeiH 0 2243196 2244245 1 1875 0.07523809523809524 1050 79 "UPF0324 family inner membrane protein" +BW25113_2158__5prime yeiH__5prime 0 2242998 2243195 1 623 0.08080808080808081 198 16 "UPF0324 family inner membrane protein" +BW25113_2158__3prime yeiH__3prime 0 2244246 2244443 1 478 0.09090909090909091 198 18 "UPF0324 family inner membrane protein" +BW25113_2159 nfo 0 2244319 2245176 1 866 0.047785547785547784 858 41 '"endonuclease IV with intrinsic 3''-5'' exonuclease activity"' +BW25113_2159__5prime nfo__5prime 0 2244121 2244318 1 451 0.08585858585858586 198 17 '"endonuclease IV with intrinsic 3''-5'' exonuclease activity"' +BW25113_2159__3prime nfo__3prime 0 2245177 2245374 1 98 0.04040404040404041 198 8 '"endonuclease IV with intrinsic 3''-5'' exonuclease activity"' +BW25113_2160 yeiI 0 2245179 2246267 1 1334 0.06887052341597796 1089 75 "putative kinase" +BW25113_2160__5prime yeiI__5prime 0 2244981 2245178 1 107 0.015151515151515152 198 3 "putative kinase" +BW25113_2160__3prime yeiI__3prime 0 2246268 2246465 1 677 0.10606060606060606 198 21 "putative kinase" +2246274_2246365 2246274_2246365 0 2246275 2246365 1 228 0.08791208791208792 91 8 "2246274_2246365" +2246274_2246365__5prime 2246274_2246365__5prime 0 2246077 2246274 1 597 0.09595959595959595 198 19 "2246274_2246365" +2246274_2246365__3prime 2246274_2246365__3prime 0 2246366 2246563 1 545 0.09090909090909091 198 18 "2246274_2246365" +BW25113_2161 nupX 0 2246374 2247624 -1 1902 0.07034372501998401 1251 88 "nucleoside permease" +BW25113_2161__5prime nupX__5prime 0 2247625 2247822 -1 266 0.04040404040404041 198 8 "nucleoside permease" +BW25113_2161__3prime nupX__3prime 0 2246176 2246373 -1 775 0.11616161616161616 198 23 "nucleoside permease" +BW25113_2162 rihB 0 2247724 2248665 -1 3020 0.15180467091295116 942 143 "ribonucleoside hydrolase 2" +BW25113_2162__5prime rihB__5prime 0 2248666 2248863 -1 404 0.10101010101010101 198 20 "ribonucleoside hydrolase 2" +BW25113_2162__3prime rihB__3prime 0 2247526 2247723 -1 287 0.05555555555555555 198 11 "ribonucleoside hydrolase 2" +BW25113_2163 yeiL 0 2248834 2249493 1 4706 0.20454545454545456 660 135 "putative transcriptional regulator" +BW25113_2163__5prime yeiL__5prime 0 2248636 2248833 1 196 0.06060606060606061 198 12 "putative transcriptional regulator" +BW25113_2163__3prime yeiL__3prime 0 2249494 2249691 1 898 0.1717171717171717 198 34 "putative transcriptional regulator" +2249516_2249553 2249516_2249553 0 2249517 2249553 1 91 0.16216216216216217 37 6 "2249516_2249553" +2249516_2249553__5prime 2249516_2249553__5prime 0 2249319 2249516 1 493 0.1111111111111111 198 22 "2249516_2249553" +2249516_2249553__3prime 2249516_2249553__3prime 0 2249554 2249751 1 921 0.15656565656565657 198 31 "2249516_2249553" +BW25113_2164 psuT 0 2249564 2250814 -1 2543 0.0815347721822542 1251 102 "putative nucleoside transporter" +BW25113_2164__5prime psuT__5prime 0 2250815 2251012 -1 211 0.045454545454545456 198 9 "putative nucleoside transporter" +BW25113_2164__3prime psuT__3prime 0 2249366 2249563 -1 540 0.11616161616161616 198 23 "putative nucleoside transporter" +BW25113_2165 psuG 0 2250908 2251846 -1 2562 0.14376996805111822 939 135 '"pseudouridine 5''-phosphate glycosidase"' +BW25113_2165__5prime psuG__5prime 0 2251847 2252044 -1 2962 0.32323232323232326 198 64 '"pseudouridine 5''-phosphate glycosidase"' +BW25113_2165__3prime psuG__3prime 0 2250710 2250907 -1 118 0.03535353535353535 198 7 '"pseudouridine 5''-phosphate glycosidase"' +BW25113_2166 psuK 0 2251834 2252775 -1 8358 0.23779193205944799 942 224 "pseudouridine kinase" +BW25113_2166__5prime psuK__5prime 0 2252776 2252973 -1 1065 0.18686868686868688 198 37 "pseudouridine kinase" +BW25113_2166__3prime psuK__3prime 0 2251636 2251833 -1 385 0.10101010101010101 198 20 "pseudouridine kinase" +BW25113_2167 fruA 0 2253198 2254889 -1 2984 0.08747044917257683 1692 148 "fused fructose-specific PTS enzymes: IIBcomponent/IIC components" +BW25113_2167__5prime fruA__5prime 0 2254890 2255087 -1 95 0.030303030303030304 198 6 "fused fructose-specific PTS enzymes: IIBcomponent/IIC components" +BW25113_2167__3prime fruA__3prime 0 2253000 2253197 -1 686 0.10101010101010101 198 20 "fused fructose-specific PTS enzymes: IIBcomponent/IIC components" +BW25113_2168 fruK 0 2254906 2255844 -1 843 0.05218317358892439 939 49 "fructose-1-phosphate kinase" +BW25113_2168__5prime fruK__5prime 0 2255845 2256042 -1 31 0.015151515151515152 198 3 "fructose-1-phosphate kinase" +BW25113_2168__3prime fruK__3prime 0 2254708 2254905 -1 195 0.03535353535353535 198 7 "fructose-1-phosphate kinase" +BW25113_2169 fruB 0 2255844 2256974 -1 1209 0.040671971706454466 1131 46 "fused fructose-specific PTS enzymes: IIA component/HPr component" +BW25113_2169__5prime fruB__5prime 0 2256975 2257172 -1 18 0.015151515151515152 198 3 "fused fructose-specific PTS enzymes: IIA component/HPr component" +BW25113_2169__3prime fruB__3prime 0 2255646 2255843 -1 179 0.05555555555555555 198 11 "fused fructose-specific PTS enzymes: IIA component/HPr component" +BW25113_2170 setB 0 2257342 2258523 1 1555 0.06091370558375635 1182 72 "lactose/glucose efflux system" +BW25113_2170__5prime setB__5prime 0 2257144 2257341 1 22 0.005050505050505051 198 1 "lactose/glucose efflux system" +BW25113_2170__3prime setB__3prime 0 2258524 2258721 1 302 0.12626262626262627 198 25 "lactose/glucose efflux system" +BW25113_4502 yeiW 0 2258520 2258774 -1 302 0.09803921568627451 255 25 "UPF0153 cysteine cluster protein" +BW25113_4502__5prime yeiW__5prime 0 2258775 2258972 -1 263 0.050505050505050504 198 10 "UPF0153 cysteine cluster protein" +BW25113_4502__3prime yeiW__3prime 0 2258322 2258519 -1 467 0.0707070707070707 198 14 "UPF0153 cysteine cluster protein" +BW25113_2171 yeiP 0 2258929 2259501 1 890 0.07504363001745201 573 43 "elongation factor P-like protein" +BW25113_2171__5prime yeiP__5prime 0 2258731 2258928 1 263 0.050505050505050504 198 10 "elongation factor P-like protein" +BW25113_2171__3prime yeiP__3prime 0 2259502 2259699 1 303 0.06565656565656566 198 13 "elongation factor P-like protein" +BW25113_2172 yeiQ 0 2259724 2261190 1 2218 0.07566462167689161 1467 111 "putative NAD-dependent D-mannonate oxidoreductase" +BW25113_2172__5prime yeiQ__5prime 0 2259526 2259723 1 259 0.05555555555555555 198 11 "putative NAD-dependent D-mannonate oxidoreductase" +BW25113_2172__3prime yeiQ__3prime 0 2261191 2261388 1 447 0.08080808080808081 198 16 "putative NAD-dependent D-mannonate oxidoreductase" +BW25113_2173 yeiR 0 2261308 2262294 1 1401 0.07092198581560284 987 70 "Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein" +BW25113_2173__5prime yeiR__5prime 0 2261110 2261307 1 504 0.08585858585858586 198 17 "Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein" +BW25113_2173__3prime yeiR__3prime 0 2262295 2262492 1 233 0.05555555555555555 198 11 "Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein" +BW25113_2174 lpxT 0 2262333 2263046 1 1696 0.11624649859943978 714 83 "lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase" +BW25113_2174__5prime lpxT__5prime 0 2262135 2262332 1 171 0.03535353535353535 198 7 "lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase" +BW25113_2174__3prime lpxT__3prime 0 2263047 2263244 1 324 0.12121212121212122 198 24 "lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase" +BW25113_2175 mepS 0 2263458 2264024 1 1279 0.12169312169312169 567 69 "murein DD-endopeptidase and space-maker hydrolase and mutational suppressor of prc thermosensitivity and outer membrane lipoprotein" +BW25113_2175__5prime mepS__5prime 0 2263260 2263457 1 525 0.09090909090909091 198 18 "murein DD-endopeptidase and space-maker hydrolase and mutational suppressor of prc thermosensitivity and outer membrane lipoprotein" +BW25113_2175__3prime mepS__3prime 0 2264025 2264222 1 331 0.0707070707070707 198 14 "murein DD-endopeptidase and space-maker hydrolase and mutational suppressor of prc thermosensitivity and outer membrane lipoprotein" +BW25113_2176 rtn 0 2264205 2265761 1 2453 0.08156711624919717 1557 127 "resistance protein for phages lambda and N4 and putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_2176__5prime rtn__5prime 0 2264007 2264204 1 353 0.08080808080808081 198 16 "resistance protein for phages lambda and N4 and putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_2176__3prime rtn__3prime 0 2265762 2265959 1 508 0.13636363636363635 198 27 "resistance protein for phages lambda and N4 and putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_2177 yejA 0 2265843 2267657 1 3187 0.08539944903581267 1815 155 "microcin C transporter YejABEF and periplasmic binding protein; ABC family" +BW25113_2177__5prime yejA__5prime 0 2265645 2265842 1 400 0.11616161616161616 198 23 "microcin C transporter YejABEF and periplasmic binding protein; ABC family" +BW25113_2177__3prime yejA__3prime 0 2267658 2267855 1 120 0.05555555555555555 198 11 "microcin C transporter YejABEF and periplasmic binding protein; ABC family" +BW25113_2178 yejB 0 2267658 2268752 1 1101 0.06118721461187215 1095 67 "microcin C transporter YejABEF and permease subunit; ABC family" +BW25113_2178__5prime yejB__5prime 0 2267460 2267657 1 406 0.13636363636363635 198 27 "microcin C transporter YejABEF and permease subunit; ABC family" +BW25113_2178__3prime yejB__3prime 0 2268753 2268950 1 105 0.045454545454545456 198 9 "microcin C transporter YejABEF and permease subunit; ABC family" +BW25113_2179 yejE 0 2268752 2269777 1 1752 0.09551656920077972 1026 98 "microcin C transporter YejABEF and permease subunit; ABC family" +BW25113_2179__5prime yejE__5prime 0 2268554 2268751 1 279 0.08585858585858586 198 17 "microcin C transporter YejABEF and permease subunit; ABC family" +BW25113_2179__3prime yejE__3prime 0 2269778 2269975 1 145 0.06060606060606061 198 12 "microcin C transporter YejABEF and permease subunit; ABC family" +BW25113_2180 yejF 0 2269779 2271368 1 2291 0.0729559748427673 1590 116 "microcin C transporter and ATP-binding subunit; ABC family" +BW25113_2180__5prime yejF__5prime 0 2269581 2269778 1 233 0.09595959595959595 198 19 "microcin C transporter and ATP-binding subunit; ABC family" +BW25113_2180__3prime yejF__3prime 0 2271369 2271566 1 315 0.09090909090909091 198 18 "microcin C transporter and ATP-binding subunit; ABC family" +BW25113_2181 yejG 0 2271372 2271716 -1 438 0.06956521739130435 345 24 "uncharacterized protein" +BW25113_2181__5prime yejG__5prime 0 2271717 2271914 -1 74 0.020202020202020204 198 4 "uncharacterized protein" +BW25113_2181__3prime yejG__3prime 0 2271174 2271371 -1 193 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_2182 bcr 0 2272049 2273239 -1 1709 0.07052896725440806 1191 84 "bicyclomycin/cysteine/sulfonamide efflux transporter" +BW25113_2182__5prime bcr__5prime 0 2273240 2273437 -1 242 0.06060606060606061 198 12 "bicyclomycin/cysteine/sulfonamide efflux transporter" +BW25113_2182__3prime bcr__3prime 0 2271851 2272048 -1 0 0.0 198 0 "bicyclomycin/cysteine/sulfonamide efflux transporter" +BW25113_2183 rsuA 0 2273267 2273962 -1 950 0.06609195402298851 696 46 "16S rRNA pseudouridine(516) synthase" +BW25113_2183__5prime rsuA__5prime 0 2273963 2274160 -1 110 0.045454545454545456 198 9 "16S rRNA pseudouridine(516) synthase" +BW25113_2183__3prime rsuA__3prime 0 2273069 2273266 -1 179 0.04040404040404041 198 8 "16S rRNA pseudouridine(516) synthase" +BW25113_2184 yejH 0 2274111 2275871 1 2582 0.060193072118114706 1761 106 "putative ATP-dependent DNA or RNA helicase" +BW25113_2184__5prime yejH__5prime 0 2273913 2274110 1 121 0.04040404040404041 198 8 "putative ATP-dependent DNA or RNA helicase" +BW25113_2184__3prime yejH__3prime 0 2275872 2276069 1 110 0.005050505050505051 198 1 "putative ATP-dependent DNA or RNA helicase" +BW25113_2185 rplY 0 2275996 2276280 1 0 0.0 285 0 "50S ribosomal subunit protein L25" +BW25113_2185__5prime rplY__5prime 0 2275798 2275995 1 278 0.045454545454545456 198 9 "50S ribosomal subunit protein L25" +BW25113_2185__3prime rplY__3prime 0 2276281 2276478 1 118 0.030303030303030304 198 6 "50S ribosomal subunit protein L25" +2276365_2276399 2276365_2276399 0 2276366 2276399 1 15 0.058823529411764705 34 2 "2276365_2276399" +2276365_2276399__5prime 2276365_2276399__5prime 0 2276168 2276365 1 6 0.005050505050505051 198 1 "2276365_2276399" +2276365_2276399__3prime 2276365_2276399__3prime 0 2276400 2276597 1 365 0.09595959595959595 198 19 "2276365_2276399" +BW25113_2186 yejK 0 2276419 2277426 -1 2365 0.10218253968253968 1008 103 "spermidine nucleoid-associated protein" +BW25113_2186__5prime yejK__5prime 0 2277427 2277624 -1 136 0.05555555555555555 198 11 "spermidine nucleoid-associated protein" +BW25113_2186__3prime yejK__3prime 0 2276221 2276418 -1 41 0.020202020202020204 198 4 "spermidine nucleoid-associated protein" +BW25113_2187 yejL 0 2277608 2277835 1 187 0.07456140350877193 228 17 "UPF0352 family protein" +BW25113_2187__5prime yejL__5prime 0 2277410 2277607 1 177 0.07575757575757576 198 15 "UPF0352 family protein" +BW25113_2187__3prime yejL__3prime 0 2277836 2278033 1 29 0.020202020202020204 198 4 "UPF0352 family protein" +BW25113_2188 yejM 0 2277855 2279615 1 1516 0.05110732538330494 1761 90 "essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor" +BW25113_2188__5prime yejM__5prime 0 2277657 2277854 1 197 0.09090909090909091 198 18 "essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor" +BW25113_2188__3prime yejM__3prime 0 2279616 2279813 1 276 0.08585858585858586 198 17 "essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor" +BW25113_2189 proL 0 2279690 2279766 1 260 0.18181818181818182 77 14 "tRNA-Pro" +BW25113_2189__5prime proL__5prime 0 2279492 2279689 1 188 0.07575757575757576 198 15 "tRNA-Pro" +BW25113_2189__3prime proL__3prime 0 2279767 2279964 1 102 0.03535353535353535 198 7 "tRNA-Pro" +BW25113_2190 yejO 0 2279869 2283659 -1 11642 0.14297019256132945 3791 542 "2279868_2283659" +BW25113_2190__5prime yejO__5prime 0 2283660 2283857 -1 101 0.045454545454545456 198 9 "2279868_2283659" +BW25113_2190__3prime yejO__3prime 0 2279671 2279868 -1 286 0.09090909090909091 198 18 "2279868_2283659" +2282397_2283592 2282397_2283592 0 2282398 2283592 -1 2641 0.16736401673640167 1195 200 "2282397_2283592" +2282397_2283592__5prime 2282397_2283592__5prime 0 2283593 2283790 -1 343 0.05555555555555555 198 11 "2282397_2283592" +2282397_2283592__3prime 2282397_2283592__3prime 0 2282200 2282397 -1 1419 0.2727272727272727 198 54 "2282397_2283592" +BW25113_2192 insH1 0 2282544 2283560 -1 2068 0.17010816125860373 1017 173 "IS5 transposase and trans-activator" +BW25113_2192__5prime insH1__5prime 0 2283561 2283758 -1 792 0.12121212121212122 198 24 "IS5 transposase and trans-activator" +BW25113_2192__3prime insH1__3prime 0 2282346 2282543 -1 1152 0.1717171717171717 198 34 "IS5 transposase and trans-activator" +BW25113_2193 narP 0 2283979 2284626 1 1757 0.07716049382716049 648 50 "response regulator in two-component regulatory system with NarQ or NarX" +BW25113_2193__5prime narP__5prime 0 2283781 2283978 1 248 0.09090909090909091 198 18 "response regulator in two-component regulatory system with NarQ or NarX" +BW25113_2193__3prime narP__3prime 0 2284627 2284824 1 277 0.07575757575757576 198 15 "response regulator in two-component regulatory system with NarQ or NarX" +2284631_2284830 2284631_2284830 0 2284632 2284830 1 277 0.07537688442211055 199 15 "2284631_2284830" +2284631_2284830__5prime 2284631_2284830__5prime 0 2284434 2284631 1 317 0.07575757575757576 198 15 "2284631_2284830" +2284631_2284830__3prime 2284631_2284830__3prime 0 2284831 2285028 1 410 0.09090909090909091 198 18 "2284631_2284830" +BW25113_2194 ccmH 0 2284837 2285889 -1 1361 0.06172839506172839 1053 65 "heme lyase and CcmH subunit" +BW25113_2194__5prime ccmH__5prime 0 2285890 2286087 -1 397 0.06565656565656566 198 13 "heme lyase and CcmH subunit" +BW25113_2194__3prime ccmH__3prime 0 2284639 2284836 -1 277 0.07575757575757576 198 15 "heme lyase and CcmH subunit" +BW25113_2195 dsbE 0 2285886 2286443 -1 862 0.04659498207885305 558 26 "periplasmic thioredoxin of cytochrome c-type biogenesis" +BW25113_2195__5prime dsbE__5prime 0 2286444 2286641 -1 96 0.020202020202020204 198 4 "periplasmic thioredoxin of cytochrome c-type biogenesis" +BW25113_2195__3prime dsbE__3prime 0 2285688 2285885 -1 213 0.06060606060606061 198 12 "periplasmic thioredoxin of cytochrome c-type biogenesis" +BW25113_2196 ccmF 0 2286440 2288383 -1 2860 0.06635802469135803 1944 129 "heme lyase and CcmF subunit" +BW25113_2196__5prime ccmF__5prime 0 2288384 2288581 -1 158 0.0707070707070707 198 14 "heme lyase and CcmF subunit" +BW25113_2196__3prime ccmF__3prime 0 2286242 2286439 -1 165 0.015151515151515152 198 3 "heme lyase and CcmF subunit" +BW25113_2197 ccmE 0 2288380 2288859 -1 324 0.052083333333333336 480 25 "periplasmic heme chaperone" +BW25113_2197__5prime ccmE__5prime 0 2288860 2289057 -1 231 0.06060606060606061 198 12 "periplasmic heme chaperone" +BW25113_2197__3prime ccmE__3prime 0 2288182 2288379 -1 285 0.045454545454545456 198 9 "periplasmic heme chaperone" +BW25113_2198 ccmD 0 2288856 2289065 -1 231 0.05714285714285714 210 12 "cytochrome c biogenesis protein" +BW25113_2198__5prime ccmD__5prime 0 2289066 2289263 -1 407 0.10101010101010101 198 20 "cytochrome c biogenesis protein" +BW25113_2198__3prime ccmD__3prime 0 2288658 2288855 -1 119 0.045454545454545456 198 9 "cytochrome c biogenesis protein" +BW25113_2199 ccmC 0 2289062 2289799 -1 1207 0.06910569105691057 738 51 "heme exporter subunit" +BW25113_2199__5prime ccmC__5prime 0 2289800 2289997 -1 181 0.045454545454545456 198 9 "heme exporter subunit" +BW25113_2199__3prime ccmC__3prime 0 2288864 2289061 -1 231 0.06060606060606061 198 12 "heme exporter subunit" +BW25113_2200 ccmB 0 2289841 2290503 -1 748 0.049773755656108594 663 33 "heme exporter subunit" +BW25113_2200__5prime ccmB__5prime 0 2290504 2290701 -1 329 0.0707070707070707 198 14 "heme exporter subunit" +BW25113_2200__3prime ccmB__3prime 0 2289643 2289840 -1 190 0.04040404040404041 198 8 "heme exporter subunit" +BW25113_2201 ccmA 0 2290500 2291123 -1 1048 0.07532051282051282 624 47 "heme exporter subunit" +BW25113_2201__5prime ccmA__5prime 0 2291124 2291321 -1 104 0.050505050505050504 198 10 "heme exporter subunit" +BW25113_2201__3prime ccmA__3prime 0 2290302 2290499 -1 124 0.015151515151515152 198 3 "heme exporter subunit" +BW25113_2202 napC 0 2291136 2291738 -1 722 0.05970149253731343 603 36 "quinol dehydrogenase and electron source for NapAB" +BW25113_2202__5prime napC__5prime 0 2291739 2291936 -1 382 0.08080808080808081 198 16 "quinol dehydrogenase and electron source for NapAB" +BW25113_2202__3prime napC__3prime 0 2290938 2291135 -1 442 0.12626262626262627 198 25 "quinol dehydrogenase and electron source for NapAB" +BW25113_2203 napB 0 2291748 2292197 -1 505 0.06444444444444444 450 29 "nitrate reductase and small and cytochrome C550 subunit and periplasmic" +BW25113_2203__5prime napB__5prime 0 2292198 2292395 -1 306 0.06060606060606061 198 12 "nitrate reductase and small and cytochrome C550 subunit and periplasmic" +BW25113_2203__3prime napB__3prime 0 2291550 2291747 -1 347 0.05555555555555555 198 11 "nitrate reductase and small and cytochrome C550 subunit and periplasmic" +BW25113_2204 napH 0 2292194 2293057 -1 1453 0.06944444444444445 864 60 "ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)" +BW25113_2204__5prime napH__5prime 0 2293058 2293255 -1 225 0.0707070707070707 198 14 "ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)" +BW25113_2204__3prime napH__3prime 0 2291996 2292193 -1 84 0.03535353535353535 198 7 "ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)" +BW25113_2205 napG 0 2293044 2293739 -1 1127 0.07758620689655173 696 54 "ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)" +BW25113_2205__5prime napG__5prime 0 2293740 2293937 -1 669 0.05555555555555555 198 11 "ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)" +BW25113_2205__3prime napG__3prime 0 2292846 2293043 -1 515 0.0707070707070707 198 14 "ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)" +BW25113_2206 napA 0 2293746 2296232 -1 4743 0.09207880981101729 2487 229 "nitrate reductase and periplasmic and large subunit" +BW25113_2206__5prime napA__5prime 0 2296233 2296430 -1 341 0.06565656565656566 198 13 "nitrate reductase and periplasmic and large subunit" +BW25113_2206__3prime napA__3prime 0 2293548 2293745 -1 289 0.0707070707070707 198 14 "nitrate reductase and periplasmic and large subunit" +BW25113_2207 napD 0 2296229 2296492 -1 513 0.06818181818181818 264 18 "assembly protein for periplasmic nitrate reductase" +BW25113_2207__5prime napD__5prime 0 2296493 2296690 -1 229 0.050505050505050504 198 10 "assembly protein for periplasmic nitrate reductase" +BW25113_2207__3prime napD__3prime 0 2296031 2296228 -1 378 0.08080808080808081 198 16 "assembly protein for periplasmic nitrate reductase" +BW25113_2208 napF 0 2296482 2296976 -1 387 0.046464646464646465 495 23 "ferredoxin-type protein and role in electron transfer to periplasmic nitrate reductase NapA" +BW25113_2208__5prime napF__5prime 0 2296977 2297174 -1 280 0.08585858585858586 198 17 "ferredoxin-type protein and role in electron transfer to periplasmic nitrate reductase NapA" +BW25113_2208__3prime napF__3prime 0 2296284 2296481 -1 513 0.09090909090909091 198 18 "ferredoxin-type protein and role in electron transfer to periplasmic nitrate reductase NapA" +BW25113_2209 eco 0 2297384 2297872 1 719 0.06339468302658487 489 31 "ecotin and a serine protease inhibitor" +BW25113_2209__5prime eco__5prime 0 2297186 2297383 1 20 0.005050505050505051 198 1 "ecotin and a serine protease inhibitor" +BW25113_2209__3prime eco__3prime 0 2297873 2298070 1 823 0.19696969696969696 198 39 "ecotin and a serine protease inhibitor" +2297895_2298550 2297895_2298550 0 2297896 2298550 1 3258 0.21221374045801528 655 139 "2297895_2298550" +2297895_2298550__5prime 2297895_2298550__5prime 0 2297698 2297895 1 610 0.12626262626262627 198 25 "2297895_2298550" +2297895_2298550__3prime 2297895_2298550__3prime 0 2298551 2298748 1 225 0.06565656565656566 198 13 "2297895_2298550" +BW25113_2210 mqo 0 2298587 2300233 -1 2766 0.07285974499089254 1647 120 "malate dehydrogenase and FAD/NAD(P)-binding domain" +BW25113_2210__5prime mqo__5prime 0 2300234 2300431 -1 116 0.03535353535353535 198 7 "malate dehydrogenase and FAD/NAD(P)-binding domain" +BW25113_2210__3prime mqo__3prime 0 2298389 2298586 -1 723 0.15656565656565657 198 31 "malate dehydrogenase and FAD/NAD(P)-binding domain" +BW25113_2211 yojI 0 2300451 2302094 -1 1894 0.06447688564476886 1644 106 "microcin J25 efflux pump and TolC-dependent; fused ABC transporter permease and ATP-binding components" +BW25113_2211__5prime yojI__5prime 0 2302095 2302292 -1 92 0.020202020202020204 198 4 "microcin J25 efflux pump and TolC-dependent; fused ABC transporter permease and ATP-binding components" +BW25113_2211__3prime yojI__3prime 0 2300253 2300450 -1 264 0.050505050505050504 198 10 "microcin J25 efflux pump and TolC-dependent; fused ABC transporter permease and ATP-binding components" +BW25113_2212 alkB 0 2302170 2302820 -1 544 0.043010752688172046 651 28 "oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions" +BW25113_2212__5prime alkB__5prime 0 2302821 2303018 -1 440 0.09595959595959595 198 19 "oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions" +BW25113_2212__3prime alkB__3prime 0 2301972 2302169 -1 108 0.04040404040404041 198 8 "oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions" +BW25113_2213 ada 0 2302820 2303884 -1 1647 0.06103286384976526 1065 65 "fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase" +BW25113_2213__5prime ada__5prime 0 2303885 2304082 -1 229 0.045454545454545456 198 9 "fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase" +BW25113_2213__3prime ada__3prime 0 2302622 2302819 -1 218 0.05555555555555555 198 11 "fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase" +BW25113_2214 apbE 0 2303958 2305013 -1 1088 0.05397727272727273 1056 57 "putative thiamine-synthetic flavin transferase lipoprotein" +BW25113_2214__5prime apbE__5prime 0 2305014 2305211 -1 260 0.06565656565656566 198 13 "putative thiamine-synthetic flavin transferase lipoprotein" +BW25113_2214__3prime apbE__3prime 0 2303760 2303957 -1 216 0.045454545454545456 198 9 "putative thiamine-synthetic flavin transferase lipoprotein" +BW25113_2215 ompC 0 2305125 2306228 -1 4221 0.14402173913043478 1104 159 "outer membrane porin protein C" +BW25113_2215__5prime ompC__5prime 0 2306229 2306426 -1 864 0.12626262626262627 198 25 "outer membrane porin protein C" +BW25113_2215__3prime ompC__3prime 0 2304927 2305124 -1 184 0.03535353535353535 198 7 "outer membrane porin protein C" +BW25113_4439 micF 0 2306563 2306655 1 54 0.03225806451612903 93 3 "sRNA antisense regulator affecting ompF expression and Hfq-dependent" +BW25113_4439__5prime micF__5prime 0 2306365 2306562 1 104 0.045454545454545456 198 9 "sRNA antisense regulator affecting ompF expression and Hfq-dependent" +BW25113_4439__3prime micF__3prime 0 2306656 2306853 1 144 0.050505050505050504 198 10 "sRNA antisense regulator affecting ompF expression and Hfq-dependent" +BW25113_2216 rcsD 0 2306967 2309639 1 4320 0.07594463150018706 2673 203 "phosphotransfer intermediate protein in two-component regulatory system with RcsBC" +BW25113_2216__5prime rcsD__5prime 0 2306769 2306966 1 746 0.16161616161616163 198 32 "phosphotransfer intermediate protein in two-component regulatory system with RcsBC" +BW25113_2216__3prime rcsD__3prime 0 2309640 2309837 1 747 0.15151515151515152 198 30 "phosphotransfer intermediate protein in two-component regulatory system with RcsBC" +BW25113_2217 rcsB 0 2309656 2310306 1 1412 0.09523809523809523 651 62 "response regulator in two-component regulatory system with RcsC and YojN" +BW25113_2217__5prime rcsB__5prime 0 2309458 2309655 1 152 0.06565656565656566 198 13 "response regulator in two-component regulatory system with RcsC and YojN" +BW25113_2217__3prime rcsB__3prime 0 2310307 2310504 1 132 0.050505050505050504 198 10 "response regulator in two-component regulatory system with RcsC and YojN" +2310312_2310509 2310312_2310509 0 2310313 2310509 1 121 0.04060913705583756 197 8 "2310312_2310509" +2310312_2310509__5prime 2310312_2310509__5prime 0 2310115 2310312 1 347 0.06060606060606061 198 12 "2310312_2310509" +2310312_2310509__3prime 2310312_2310509__3prime 0 2310510 2310707 1 464 0.10606060606060606 198 21 "2310312_2310509" +BW25113_2218 rcsC 0 2310506 2313355 -1 4166 0.07017543859649122 2850 200 "hybrid sensory kinase in two-component regulatory system with RcsB and YojN" +BW25113_2218__5prime rcsC__5prime 0 2313356 2313553 -1 524 0.09090909090909091 198 18 "hybrid sensory kinase in two-component regulatory system with RcsB and YojN" +BW25113_2218__3prime rcsC__3prime 0 2310308 2310505 -1 132 0.050505050505050504 198 10 "hybrid sensory kinase in two-component regulatory system with RcsB and YojN" +BW25113_2219 atoS 0 2313522 2315348 1 5240 0.12698412698412698 1827 232 "sensory histidine kinase in two-component regulatory system with AtoC" +BW25113_2219__5prime atoS__5prime 0 2313324 2313521 1 468 0.08585858585858586 198 17 "sensory histidine kinase in two-component regulatory system with AtoC" +BW25113_2219__3prime atoS__3prime 0 2315349 2315546 1 1002 0.20202020202020202 198 40 "sensory histidine kinase in two-component regulatory system with AtoC" +BW25113_2220 atoC 0 2315345 2316730 1 3099 0.09884559884559885 1386 137 "fused response regulator of ato operon and in two-component system with AtoS: response regulator/sigma54 interaction protein" +BW25113_2220__5prime atoC__5prime 0 2315147 2315344 1 422 0.10101010101010101 198 20 "fused response regulator of ato operon and in two-component system with AtoS: response regulator/sigma54 interaction protein" +BW25113_2220__3prime atoC__3prime 0 2316731 2316928 1 268 0.09090909090909091 198 18 "fused response regulator of ato operon and in two-component system with AtoS: response regulator/sigma54 interaction protein" +BW25113_2221 atoD 0 2316926 2317588 1 728 0.049773755656108594 663 33 "acetyl-CoA:acetoacetyl-CoA transferase and alpha subunit" +BW25113_2221__5prime atoD__5prime 0 2316728 2316925 1 268 0.09090909090909091 198 18 "acetyl-CoA:acetoacetyl-CoA transferase and alpha subunit" +BW25113_2221__3prime atoD__3prime 0 2317589 2317786 1 549 0.08585858585858586 198 17 "acetyl-CoA:acetoacetyl-CoA transferase and alpha subunit" +BW25113_2222 atoA 0 2317588 2318238 1 1643 0.10138248847926268 651 66 "acetyl-CoA:acetoacetyl-CoA transferase and beta subunit" +BW25113_2222__5prime atoA__5prime 0 2317390 2317587 1 338 0.08585858585858586 198 17 "acetyl-CoA:acetoacetyl-CoA transferase and beta subunit" +BW25113_2222__3prime atoA__3prime 0 2318239 2318436 1 147 0.05555555555555555 198 11 "acetyl-CoA:acetoacetyl-CoA transferase and beta subunit" +BW25113_2223 atoE 0 2318235 2319557 1 2689 0.10128495842781557 1323 134 "short chain fatty acid transporter" +BW25113_2223__5prime atoE__5prime 0 2318037 2318234 1 323 0.1111111111111111 198 22 "short chain fatty acid transporter" +BW25113_2223__3prime atoE__3prime 0 2319558 2319755 1 324 0.0707070707070707 198 14 "short chain fatty acid transporter" +BW25113_2224 atoB 0 2319588 2320772 1 1592 0.07679324894514768 1185 91 "acetyl-CoA acetyltransferase" +BW25113_2224__5prime atoB__5prime 0 2319390 2319587 1 857 0.17676767676767677 198 35 "acetyl-CoA acetyltransferase" +BW25113_2224__3prime atoB__3prime 0 2320773 2320970 1 112 0.03535353535353535 198 7 "acetyl-CoA acetyltransferase" +BW25113_2225 yfaP 0 2320846 2321622 -1 1301 0.08365508365508366 777 65 "DUF2135 family protein and putative host defense protein" +BW25113_2225__5prime yfaP__5prime 0 2321623 2321820 -1 323 0.1111111111111111 198 22 "DUF2135 family protein and putative host defense protein" +BW25113_2225__3prime yfaP__3prime 0 2320648 2320845 -1 145 0.030303030303030304 198 6 "DUF2135 family protein and putative host defense protein" +BW25113_2226 yfaQ 0 2321627 2323276 -1 2396 0.08121212121212121 1650 134 "tandem DUF2300 domain protein and putative host defense protein" +BW25113_2226__5prime yfaQ__5prime 0 2323277 2323474 -1 397 0.10606060606060606 198 21 "tandem DUF2300 domain protein and putative host defense protein" +BW25113_2226__3prime yfaQ__3prime 0 2321429 2321626 -1 172 0.06060606060606061 198 12 "tandem DUF2300 domain protein and putative host defense protein" +BW25113_4500 yfaS 0 2323277 2327881 -1 7685 0.07600434310532031 4605 350 "2323276_2327881" +BW25113_4500__5prime yfaS__5prime 0 2327882 2328079 -1 359 0.10606060606060606 198 21 "2323276_2327881" +BW25113_4500__3prime yfaS__3prime 0 2323079 2323276 -1 402 0.12626262626262627 198 25 "2323276_2327881" +BW25113_2229 yfaT 0 2327815 2328438 -1 1535 0.07532051282051282 624 47 "DUF1175 family protein and putative host defense protein" +BW25113_2229__5prime yfaT__5prime 0 2328439 2328636 -1 196 0.07575757575757576 198 15 "DUF1175 family protein and putative host defense protein" +BW25113_2229__3prime yfaT__3prime 0 2327617 2327814 -1 311 0.09595959595959595 198 19 "DUF1175 family protein and putative host defense protein" +BW25113_2230 yfaA 0 2328435 2330123 -1 2296 0.07756068679692125 1689 131 "DUF2138 family protein and putative host defense protein" +BW25113_2230__5prime yfaA__5prime 0 2330124 2330321 -1 451 0.050505050505050504 198 10 "DUF2138 family protein and putative host defense protein" +BW25113_2230__3prime yfaA__3prime 0 2328237 2328434 -1 740 0.07575757575757576 198 15 "DUF2138 family protein and putative host defense protein" +BW25113_2231 gyrA 0 2330272 2332899 -1 166 0.002663622526636225 2628 7 "DNA gyrase (type II topoisomerase) and subunit A" +BW25113_2231__5prime gyrA__5prime 0 2332900 2333097 -1 667 0.13131313131313133 198 26 "DNA gyrase (type II topoisomerase) and subunit A" +BW25113_2231__3prime gyrA__3prime 0 2330074 2330271 -1 581 0.10606060606060606 198 21 "DNA gyrase (type II topoisomerase) and subunit A" +2331258_2331925 2331258_2331925 0 2331259 2331925 1 0 0.0 667 0 "2331258_2331925" +2331258_2331925__5prime 2331258_2331925__5prime 0 2331061 2331258 1 0 0.0 198 0 "2331258_2331925" +2331258_2331925__3prime 2331258_2331925__3prime 0 2331926 2332123 1 0 0.0 198 0 "2331258_2331925" +BW25113_2232 ubiG 0 2333046 2333768 1 45 0.006915629322268326 723 5 "bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase" +BW25113_2232__5prime ubiG__5prime 0 2332848 2333045 1 648 0.11616161616161616 198 23 "bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase" +BW25113_2232__3prime ubiG__3prime 0 2333769 2333966 1 185 0.025252525252525252 198 5 "bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase" +2333791_2333873 2333791_2333873 0 2333792 2333873 1 185 0.06097560975609756 82 5 "2333791_2333873" +2333791_2333873__5prime 2333791_2333873__5prime 0 2333594 2333791 1 16 0.005050505050505051 198 1 "2333791_2333873" +2333791_2333873__3prime 2333791_2333873__3prime 0 2333874 2334071 1 84 0.030303030303030304 198 6 "2333791_2333873" +BW25113_2233 yfaL 0 2333896 2337648 -1 10623 0.13029576338928858 3753 489 "adhesin" +BW25113_2233__5prime yfaL__5prime 0 2337649 2337846 -1 80 0.030303030303030304 198 6 "adhesin" +BW25113_2233__3prime yfaL__3prime 0 2333698 2333895 -1 201 0.030303030303030304 198 6 "adhesin" +BW25113_2234 nrdA 0 2338344 2340629 1 0 0.0 2286 0 "ribonucleoside-diphosphate reductase 1 and alpha subunit" +BW25113_2234__5prime nrdA__5prime 0 2338146 2338343 1 220 0.09090909090909091 198 18 "ribonucleoside-diphosphate reductase 1 and alpha subunit" +BW25113_2234__3prime nrdA__3prime 0 2340630 2340827 1 182 0.04040404040404041 198 8 "ribonucleoside-diphosphate reductase 1 and alpha subunit" +2340638_2340841 2340638_2340841 0 2340639 2340841 1 122 0.029556650246305417 203 6 "2340638_2340841" +2340638_2340841__5prime 2340638_2340841__5prime 0 2340441 2340638 1 60 0.010101010101010102 198 2 "2340638_2340841" +2340638_2340841__3prime 2340638_2340841__3prime 0 2340842 2341039 1 0 0.0 198 0 "2340638_2340841" +BW25113_2235 nrdB 0 2340863 2341993 1 0 0.0 1131 0 "ribonucleoside-diphosphate reductase 1 and beta subunit and ferritin-like protein" +BW25113_2235__5prime nrdB__5prime 0 2340665 2340862 1 122 0.030303030303030304 198 6 "ribonucleoside-diphosphate reductase 1 and beta subunit and ferritin-like protein" +BW25113_2235__3prime nrdB__3prime 0 2341994 2342191 1 396 0.10101010101010101 198 20 "ribonucleoside-diphosphate reductase 1 and beta subunit and ferritin-like protein" +BW25113_2236 yfaE 0 2341993 2342247 1 527 0.11372549019607843 255 29 "ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance" +BW25113_2236__5prime yfaE__5prime 0 2341795 2341992 1 0 0.0 198 0 "ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance" +BW25113_2236__3prime yfaE__3prime 0 2342248 2342445 1 347 0.09090909090909091 198 18 "ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance" +2342259_2342295 2342259_2342295 0 2342260 2342295 1 79 0.2777777777777778 36 10 "2342259_2342295" +2342259_2342295__5prime 2342259_2342295__5prime 0 2342062 2342259 1 417 0.10606060606060606 198 21 "2342259_2342295" +2342259_2342295__3prime 2342259_2342295__3prime 0 2342296 2342493 1 326 0.06060606060606061 198 12 "2342259_2342295" +BW25113_2237 inaA 0 2342301 2342951 -1 1390 0.10906298003072197 651 71 "acid-inducible Kdo/WaaP family putative kinase" +BW25113_2237__5prime inaA__5prime 0 2342952 2343149 -1 323 0.0707070707070707 198 14 "acid-inducible Kdo/WaaP family putative kinase" +BW25113_2237__3prime inaA__3prime 0 2342103 2342300 -1 630 0.1414141414141414 198 28 "acid-inducible Kdo/WaaP family putative kinase" +BW25113_2238 yfaH 0 2343130 2343372 1 451 0.09465020576131687 243 23 "2343129_2343372" +BW25113_2238__5prime yfaH__5prime 0 2342932 2343129 1 385 0.09090909090909091 198 18 "2343129_2343372" +BW25113_2238__3prime yfaH__3prime 0 2343373 2343570 1 1501 0.20202020202020202 198 40 "2343129_2343372" +BW25113_2239 glpQ 0 2343414 2344490 -1 4150 0.1327762302692665 1077 143 "periplasmic glycerophosphodiester phosphodiesterase" +BW25113_2239__5prime glpQ__5prime 0 2344491 2344688 -1 187 0.03535353535353535 198 7 "periplasmic glycerophosphodiester phosphodiesterase" +BW25113_2239__3prime glpQ__3prime 0 2343216 2343413 -1 464 0.10101010101010101 198 20 "periplasmic glycerophosphodiester phosphodiesterase" +BW25113_2240 glpT 0 2344495 2345853 -1 4335 0.09271523178807947 1359 126 "sn-glycerol-3-phosphate transporter" +BW25113_2240__5prime glpT__5prime 0 2345854 2346051 -1 12 0.005050505050505051 198 1 "sn-glycerol-3-phosphate transporter" +BW25113_2240__3prime glpT__3prime 0 2344297 2344494 -1 468 0.07575757575757576 198 15 "sn-glycerol-3-phosphate transporter" +BW25113_2241 glpA 0 2346126 2347754 1 3151 0.08717004297114794 1629 142 "sn-glycerol-3-phosphate dehydrogenase (anaerobic) and large subunit and FAD/NAD(P)-binding" +BW25113_2241__5prime glpA__5prime 0 2345928 2346125 1 0 0.0 198 0 "sn-glycerol-3-phosphate dehydrogenase (anaerobic) and large subunit and FAD/NAD(P)-binding" +BW25113_2241__3prime glpA__3prime 0 2347755 2347952 1 290 0.08585858585858586 198 17 "sn-glycerol-3-phosphate dehydrogenase (anaerobic) and large subunit and FAD/NAD(P)-binding" +BW25113_2242 glpB 0 2347744 2349003 1 1828 0.06587301587301587 1260 83 "sn-glycerol-3-phosphate dehydrogenase (anaerobic) and membrane anchor subunit" +BW25113_2242__5prime glpB__5prime 0 2347546 2347743 1 342 0.09595959595959595 198 19 "sn-glycerol-3-phosphate dehydrogenase (anaerobic) and membrane anchor subunit" +BW25113_2242__3prime glpB__3prime 0 2349004 2349201 1 277 0.08585858585858586 198 17 "sn-glycerol-3-phosphate dehydrogenase (anaerobic) and membrane anchor subunit" +BW25113_2243 glpC 0 2349000 2350190 1 2560 0.0873215785054576 1191 104 "anaerobic sn-glycerol-3-phosphate dehydrogenase and C subunit and 4Fe-4S iron-sulfur cluster" +BW25113_2243__5prime glpC__5prime 0 2348802 2348999 1 341 0.08080808080808081 198 16 "anaerobic sn-glycerol-3-phosphate dehydrogenase and C subunit and 4Fe-4S iron-sulfur cluster" +BW25113_2243__3prime glpC__3prime 0 2350191 2350388 1 409 0.10101010101010101 198 20 "anaerobic sn-glycerol-3-phosphate dehydrogenase and C subunit and 4Fe-4S iron-sulfur cluster" +BW25113_2244 yfaD 0 2350383 2351282 1 1028 0.0811111111111111 900 73 "transposase_31 family protein" +BW25113_2244__5prime yfaD__5prime 0 2350185 2350382 1 564 0.1111111111111111 198 22 "transposase_31 family protein" +BW25113_2244__3prime yfaD__3prime 0 2351283 2351480 1 206 0.05555555555555555 198 11 "transposase_31 family protein" +BW25113_4543 ypaA 0 2351295 2351480 1 206 0.05913978494623656 186 11 "uncharacterized protein" +BW25113_4543__5prime ypaA__5prime 0 2351097 2351294 1 82 0.030303030303030304 198 6 "uncharacterized protein" +BW25113_4543__3prime ypaA__3prime 0 2351481 2351678 1 228 0.045454545454545456 198 9 "uncharacterized protein" +BW25113_2245 rhmA 0 2351521 2352324 -1 1052 0.06592039800995025 804 53 "2-keto-3-deoxy-L-rhamnonate aldolase" +BW25113_2245__5prime rhmA__5prime 0 2352325 2352522 -1 387 0.10101010101010101 198 20 "2-keto-3-deoxy-L-rhamnonate aldolase" +BW25113_2245__3prime rhmA__3prime 0 2351323 2351520 -1 211 0.05555555555555555 198 11 "2-keto-3-deoxy-L-rhamnonate aldolase" +BW25113_2246 rhmT 0 2352342 2353631 -1 2117 0.07751937984496124 1290 100 "putative L-rhamnonate transporter" +BW25113_2246__5prime rhmT__5prime 0 2353632 2353829 -1 164 0.08585858585858586 198 17 "putative L-rhamnonate transporter" +BW25113_2246__3prime rhmT__3prime 0 2352144 2352341 -1 112 0.05555555555555555 198 11 "putative L-rhamnonate transporter" +BW25113_2247 rhmD 0 2353688 2354893 -1 1854 0.08706467661691543 1206 105 "L-rhamnonate dehydratase" +BW25113_2247__5prime rhmD__5prime 0 2354894 2355091 -1 208 0.050505050505050504 198 10 "L-rhamnonate dehydratase" +BW25113_2247__3prime rhmD__3prime 0 2353490 2353687 -1 347 0.10101010101010101 198 20 "L-rhamnonate dehydratase" +BW25113_2248 rhmR 0 2354908 2355690 -1 1231 0.06641123882503193 783 52 "putative DNA-binding transcriptional regulator for the rhm operon" +BW25113_2248__5prime rhmR__5prime 0 2355691 2355888 -1 522 0.06565656565656566 198 13 "putative DNA-binding transcriptional regulator for the rhm operon" +BW25113_2248__3prime rhmR__3prime 0 2354710 2354907 -1 499 0.13131313131313133 198 26 "putative DNA-binding transcriptional regulator for the rhm operon" +BW25113_2249 yfaY 0 2355910 2357112 -1 2589 0.0889443059019119 1203 107 "inactive PncC family protein" +BW25113_2249__5prime yfaY__5prime 0 2357113 2357310 -1 622 0.12626262626262627 198 25 "inactive PncC family protein" +BW25113_2249__3prime yfaY__3prime 0 2355712 2355909 -1 419 0.06060606060606061 198 12 "inactive PncC family protein" +BW25113_2250 yfaZ 0 2357212 2357754 -1 2135 0.1841620626151013 543 100 "outer membrane protein and putative porin" +BW25113_2250__5prime yfaZ__5prime 0 2357755 2357952 -1 1829 0.10606060606060606 198 21 "outer membrane protein and putative porin" +BW25113_2250__3prime yfaZ__3prime 0 2357014 2357211 -1 347 0.05555555555555555 198 11 "outer membrane protein and putative porin" +BW25113_2251 nudI 0 2358033 2358458 1 2956 0.18779342723004694 426 80 "nucleoside triphosphatase" +BW25113_2251__5prime nudI__5prime 0 2357835 2358032 1 241 0.08080808080808081 198 16 "nucleoside triphosphatase" +BW25113_2251__3prime nudI__3prime 0 2358459 2358656 1 682 0.18686868686868688 198 37 "nucleoside triphosphatase" +BW25113_2252 ais 0 2358497 2359099 -1 6260 0.30845771144278605 603 186 "putative LPS core heptose(II)-phosphate phosphatase" +BW25113_2252__5prime ais__5prime 0 2359100 2359297 -1 327 0.1111111111111111 198 22 "putative LPS core heptose(II)-phosphate phosphatase" +BW25113_2252__3prime ais__3prime 0 2358299 2358496 -1 990 0.20707070707070707 198 41 "putative LPS core heptose(II)-phosphate phosphatase" +BW25113_2253 arnB 0 2359407 2360546 1 4719 0.17280701754385966 1140 197 '"uridine 5''-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase and PLP-dependent"' +BW25113_2253__5prime arnB__5prime 0 2359209 2359406 1 96 0.05555555555555555 198 11 '"uridine 5''-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase and PLP-dependent"' +BW25113_2253__3prime arnB__3prime 0 2360547 2360744 1 707 0.18686868686868688 198 37 '"uridine 5''-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase and PLP-dependent"' +BW25113_2254 arnC 0 2360550 2361518 1 2973 0.12796697626418987 969 124 "undecaprenyl phosphate-L-Ara4FN transferase" +BW25113_2254__5prime arnC__5prime 0 2360352 2360549 1 1319 0.17676767676767677 198 35 "undecaprenyl phosphate-L-Ara4FN transferase" +BW25113_2254__3prime arnC__3prime 0 2361519 2361716 1 316 0.08585858585858586 198 17 "undecaprenyl phosphate-L-Ara4FN transferase" +BW25113_2255 arnA 0 2361518 2363500 1 4580 0.08472012102874432 1983 168 '"fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4''-decarboxylase"' +BW25113_2255__5prime arnA__5prime 0 2361320 2361517 1 472 0.10606060606060606 198 21 '"fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4''-decarboxylase"' +BW25113_2255__3prime arnA__3prime 0 2363501 2363698 1 317 0.1111111111111111 198 22 '"fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4''-decarboxylase"' +BW25113_2256 arnD 0 2363497 2364387 1 1678 0.08080808080808081 891 72 "undecaprenyl phosphate-alpha-L-ara4FN deformylase" +BW25113_2256__5prime arnD__5prime 0 2363299 2363496 1 402 0.09595959595959595 198 19 "undecaprenyl phosphate-alpha-L-ara4FN deformylase" +BW25113_2256__3prime arnD__3prime 0 2364388 2364585 1 371 0.07575757575757576 198 15 "undecaprenyl phosphate-alpha-L-ara4FN deformylase" +BW25113_2257 arnT 0 2364387 2366039 1 3410 0.0852994555353902 1653 141 "4-amino-4-deoxy-L-arabinose transferase" +BW25113_2257__5prime arnT__5prime 0 2364189 2364386 1 315 0.10606060606060606 198 21 "4-amino-4-deoxy-L-arabinose transferase" +BW25113_2257__3prime arnT__3prime 0 2366040 2366237 1 136 0.030303030303030304 198 6 "4-amino-4-deoxy-L-arabinose transferase" +BW25113_4544 arnE 0 2366036 2366371 1 468 0.08333333333333333 336 28 "undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" +BW25113_4544__5prime arnE__5prime 0 2365838 2366035 1 245 0.07575757575757576 198 15 "undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" +BW25113_4544__3prime arnE__3prime 0 2366372 2366569 1 400 0.06060606060606061 198 12 "undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" +BW25113_2258 arnF 0 2366371 2366757 1 787 0.09302325581395349 387 36 "undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" +BW25113_2258__5prime arnF__5prime 0 2366173 2366370 1 377 0.12626262626262627 198 25 "undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" +BW25113_2258__3prime arnF__3prime 0 2366758 2366955 1 472 0.07575757575757576 198 15 "undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" +BW25113_2259 pmrD 0 2366751 2367017 -1 792 0.08239700374531835 267 22 "inactive two-component system connector protein" +BW25113_2259__5prime pmrD__5prime 0 2367018 2367215 -1 179 0.0707070707070707 198 14 "inactive two-component system connector protein" +BW25113_2259__3prime pmrD__3prime 0 2366553 2366750 -1 241 0.12121212121212122 198 24 "inactive two-component system connector protein" +BW25113_2260 menE 0 2367127 2368482 -1 2262 0.11061946902654868 1356 150 "O-succinylbenzoate-CoA ligase" +BW25113_2260__5prime menE__5prime 0 2368483 2368680 -1 160 0.0707070707070707 198 14 "O-succinylbenzoate-CoA ligase" +BW25113_2260__3prime menE__3prime 0 2366929 2367126 -1 209 0.05555555555555555 198 11 "O-succinylbenzoate-CoA ligase" +2367265_2367429 2367265_2367429 0 2367266 2367429 1 516 0.20121951219512196 164 33 "2367265_2367429" +2367265_2367429__5prime 2367265_2367429__5prime 0 2367068 2367265 1 333 0.10606060606060606 198 21 "2367265_2367429" +2367265_2367429__3prime 2367265_2367429__3prime 0 2367430 2367627 1 220 0.050505050505050504 198 10 "2367265_2367429" +BW25113_2261 menC 0 2368479 2369441 -1 2138 0.10072689511941849 963 97 "O-succinylbenzoyl-CoA synthase" +BW25113_2261__5prime menC__5prime 0 2369442 2369639 -1 276 0.04040404040404041 198 8 "O-succinylbenzoyl-CoA synthase" +BW25113_2261__3prime menC__3prime 0 2368281 2368478 -1 358 0.10606060606060606 198 21 "O-succinylbenzoyl-CoA synthase" +BW25113_2262 menB 0 2369441 2370298 -1 910 0.053613053613053616 858 46 "dihydroxynaphthoic acid synthetase" +BW25113_2262__5prime menB__5prime 0 2370299 2370496 -1 69 0.020202020202020204 198 4 "dihydroxynaphthoic acid synthetase" +BW25113_2262__3prime menB__3prime 0 2369243 2369440 -1 763 0.09090909090909091 198 18 "dihydroxynaphthoic acid synthetase" +BW25113_2263 menH 0 2370313 2371071 -1 816 0.08168642951251646 759 62 "2-succinyl-6-hydroxy-2 and 4-cyclohexadiene-1-carboxylate synthase" +BW25113_2263__5prime menH__5prime 0 2371072 2371269 -1 260 0.050505050505050504 198 10 "2-succinyl-6-hydroxy-2 and 4-cyclohexadiene-1-carboxylate synthase" +BW25113_2263__3prime menH__3prime 0 2370115 2370312 -1 215 0.0707070707070707 198 14 "2-succinyl-6-hydroxy-2 and 4-cyclohexadiene-1-carboxylate synthase" +BW25113_2264 menD 0 2371068 2372738 -1 2345 0.07121484141232795 1671 119 "2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; SEPHCHC synthase" +BW25113_2264__5prime menD__5prime 0 2372739 2372936 -1 226 0.07575757575757576 198 15 "2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; SEPHCHC synthase" +BW25113_2264__3prime menD__3prime 0 2370870 2371067 -1 414 0.13636363636363635 198 27 "2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; SEPHCHC synthase" +BW25113_2265 menF 0 2372827 2374122 -1 1886 0.06712962962962964 1296 87 "isochorismate synthase 2" +BW25113_2265__5prime menF__5prime 0 2374123 2374320 -1 405 0.16161616161616163 198 32 "isochorismate synthase 2" +BW25113_2265__3prime menF__3prime 0 2372629 2372826 -1 464 0.1111111111111111 198 22 "isochorismate synthase 2" +BW25113_2266 elaB 0 2374201 2374506 -1 726 0.16013071895424835 306 49 "DUF883 family protein and putative membrane-anchored ribosome-binding protein" +BW25113_2266__5prime elaB__5prime 0 2374507 2374704 -1 427 0.10101010101010101 198 20 "DUF883 family protein and putative membrane-anchored ribosome-binding protein" +BW25113_2266__3prime elaB__3prime 0 2374003 2374200 -1 165 0.06565656565656566 198 13 "DUF883 family protein and putative membrane-anchored ribosome-binding protein" +BW25113_2267 elaA 0 2374561 2375022 -1 1515 0.10822510822510822 462 50 "putative acyl-CoA transferase" +BW25113_2267__5prime elaA__5prime 0 2375023 2375220 -1 970 0.1717171717171717 198 34 "putative acyl-CoA transferase" +BW25113_2267__3prime elaA__3prime 0 2374363 2374560 -1 376 0.1111111111111111 198 22 "putative acyl-CoA transferase" +BW25113_2268 rbn 0 2375087 2376004 1 4372 0.19498910675381265 918 179 "RNase BN and tRNA processing enzyme" +BW25113_2268__5prime rbn__5prime 0 2374889 2375086 1 1003 0.12626262626262627 198 25 "RNase BN and tRNA processing enzyme" +BW25113_2268__3prime rbn__3prime 0 2376005 2376202 1 1567 0.2676767676767677 198 53 "RNase BN and tRNA processing enzyme" +BW25113_2269 elaD 0 2376192 2377403 1 3893 0.13861386138613863 1212 168 "protease and capable of cleaving an AMC-ubiquitin model substrate" +BW25113_2269__5prime elaD__5prime 0 2375994 2376191 1 1569 0.2878787878787879 198 57 "protease and capable of cleaving an AMC-ubiquitin model substrate" +BW25113_2269__3prime elaD__3prime 0 2377404 2377601 1 2492 0.3787878787878788 198 75 "protease and capable of cleaving an AMC-ubiquitin model substrate" +BW25113_2270 yfbK 0 2377474 2379201 -1 15707 0.2760416666666667 1728 477 "Von Willebrand factor domain putative lipoprotein" +BW25113_2270__5prime yfbK__5prime 0 2379202 2379399 -1 27 0.020202020202020204 198 4 "Von Willebrand factor domain putative lipoprotein" +BW25113_2270__3prime yfbK__3prime 0 2377276 2377473 -1 313 0.10101010101010101 198 20 "Von Willebrand factor domain putative lipoprotein" +BW25113_2271 yfbL 0 2379339 2380310 1 10125 0.301440329218107 972 293 "putative peptidase" +BW25113_2271__5prime yfbL__5prime 0 2379141 2379338 1 256 0.0707070707070707 198 14 "putative peptidase" +BW25113_2271__3prime yfbL__3prime 0 2380311 2380508 1 396 0.0707070707070707 198 14 "putative peptidase" +BW25113_2272 yfbM 0 2380413 2380916 1 7432 0.3472222222222222 504 175 "DUF1877 family protein" +BW25113_2272__5prime yfbM__5prime 0 2380215 2380412 1 461 0.10606060606060606 198 21 "DUF1877 family protein" +BW25113_2272__3prime yfbM__3prime 0 2380917 2381114 1 1745 0.3434343434343434 198 68 "DUF1877 family protein" +BW25113_2273 yfbN 0 2381189 2381905 -1 4022 0.22733612273361228 717 163 "uncharacterized protein" +BW25113_2273__5prime yfbN__5prime 0 2381906 2382103 -1 178 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_2273__3prime yfbN__3prime 0 2380991 2381188 -1 1347 0.2878787878787879 198 57 "uncharacterized protein" +BW25113_2274 yfbO 0 2382114 2382536 1 4445 0.29314420803782504 423 124 "uncharacterized protein" +BW25113_2274__5prime yfbO__5prime 0 2381916 2382113 1 178 0.09090909090909091 198 18 "uncharacterized protein" +BW25113_2274__3prime yfbO__3prime 0 2382537 2382734 1 1266 0.18686868686868688 198 37 "uncharacterized protein" +BW25113_2275 yfbP 0 2382595 2383443 1 4809 0.18138987043580684 849 154 "TPR-like repeats-containing protein" +BW25113_2275__5prime yfbP__5prime 0 2382397 2382594 1 3177 0.3383838383838384 198 67 "TPR-like repeats-containing protein" +BW25113_2275__3prime yfbP__3prime 0 2383444 2383641 1 123 0.04040404040404041 198 8 "TPR-like repeats-containing protein" +BW25113_2276 nuoN 0 2383527 2384984 -1 732 0.02880658436213992 1458 42 "NADH:ubiquinone oxidoreductase and membrane subunit N" +BW25113_2276__5prime nuoN__5prime 0 2384985 2385182 -1 71 0.015151515151515152 198 3 "NADH:ubiquinone oxidoreductase and membrane subunit N" +BW25113_2276__3prime nuoN__3prime 0 2383329 2383526 -1 629 0.09090909090909091 198 18 "NADH:ubiquinone oxidoreductase and membrane subunit N" +BW25113_2277 nuoM 0 2384991 2386520 -1 623 0.03202614379084967 1530 49 "NADH:ubiquinone oxidoreductase and membrane subunit M" +BW25113_2277__5prime nuoM__5prime 0 2386521 2386718 -1 293 0.05555555555555555 198 11 "NADH:ubiquinone oxidoreductase and membrane subunit M" +BW25113_2277__3prime nuoM__3prime 0 2384793 2384990 -1 32 0.020202020202020204 198 4 "NADH:ubiquinone oxidoreductase and membrane subunit M" +2386609_2386645 2386609_2386645 0 2386610 2386645 1 52 0.027777777777777776 36 1 "2386609_2386645" +2386609_2386645__5prime 2386609_2386645__5prime 0 2386412 2386609 1 61 0.020202020202020204 198 4 "2386609_2386645" +2386609_2386645__3prime 2386609_2386645__3prime 0 2386646 2386843 1 299 0.0707070707070707 198 14 "2386609_2386645" +BW25113_2278 nuoL 0 2386684 2388525 -1 1280 0.04234527687296417 1842 78 "NADH:ubiquinone oxidoreductase and membrane subunit L" +BW25113_2278__5prime nuoL__5prime 0 2388526 2388723 -1 162 0.030303030303030304 198 6 "NADH:ubiquinone oxidoreductase and membrane subunit L" +BW25113_2278__3prime nuoL__3prime 0 2386486 2386683 -1 115 0.025252525252525252 198 5 "NADH:ubiquinone oxidoreductase and membrane subunit L" +BW25113_2279 nuoK 0 2388522 2388824 -1 175 0.026402640264026403 303 8 "NADH:ubiquinone oxidoreductase and membrane subunit K" +BW25113_2279__5prime nuoK__5prime 0 2388825 2389022 -1 517 0.13636363636363635 198 27 "NADH:ubiquinone oxidoreductase and membrane subunit K" +BW25113_2279__3prime nuoK__3prime 0 2388324 2388521 -1 94 0.030303030303030304 198 6 "NADH:ubiquinone oxidoreductase and membrane subunit K" +BW25113_2280 nuoJ 0 2388821 2389375 -1 639 0.07027027027027027 555 39 "NADH:ubiquinone oxidoreductase and membrane subunit J" +BW25113_2280__5prime nuoJ__5prime 0 2389376 2389573 -1 134 0.050505050505050504 198 10 "NADH:ubiquinone oxidoreductase and membrane subunit J" +BW25113_2280__3prime nuoJ__3prime 0 2388623 2388820 -1 151 0.020202020202020204 198 4 "NADH:ubiquinone oxidoreductase and membrane subunit J" +BW25113_2281 nuoI 0 2389387 2389929 -1 305 0.029465930018416207 543 16 "NADH:ubiquinone oxidoreductase and chain I" +BW25113_2281__5prime nuoI__5prime 0 2389930 2390127 -1 27 0.005050505050505051 198 1 "NADH:ubiquinone oxidoreductase and chain I" +BW25113_2281__3prime nuoI__3prime 0 2389189 2389386 -1 108 0.06060606060606061 198 12 "NADH:ubiquinone oxidoreductase and chain I" +BW25113_2282 nuoH 0 2389944 2390921 -1 402 0.03680981595092025 978 36 "NADH:ubiquinone oxidoreductase and membrane subunit H" +BW25113_2282__5prime nuoH__5prime 0 2390922 2391119 -1 209 0.06565656565656566 198 13 "NADH:ubiquinone oxidoreductase and membrane subunit H" +BW25113_2282__3prime nuoH__3prime 0 2389746 2389943 -1 123 0.025252525252525252 198 5 "NADH:ubiquinone oxidoreductase and membrane subunit H" +BW25113_2283 nuoG 0 2390918 2393644 -1 1470 0.03226989365603227 2727 88 "NADH:ubiquinone oxidoreductase and chain G" +BW25113_2283__5prime nuoG__5prime 0 2393645 2393842 -1 119 0.04040404040404041 198 8 "NADH:ubiquinone oxidoreductase and chain G" +BW25113_2283__3prime nuoG__3prime 0 2390720 2390917 -1 25 0.020202020202020204 198 4 "NADH:ubiquinone oxidoreductase and chain G" +BW25113_2284 nuoF 0 2393697 2395034 -1 748 0.0343796711509716 1338 46 "NADH:ubiquinone oxidoreductase and chain F" +BW25113_2284__5prime nuoF__5prime 0 2395035 2395232 -1 24 0.005050505050505051 198 1 "NADH:ubiquinone oxidoreductase and chain F" +BW25113_2284__3prime nuoF__3prime 0 2393499 2393696 -1 80 0.025252525252525252 198 5 "NADH:ubiquinone oxidoreductase and chain F" +BW25113_2285 nuoE 0 2395031 2395531 -1 307 0.031936127744510975 501 16 "NADH:ubiquinone oxidoreductase and chain E" +BW25113_2285__5prime nuoE__5prime 0 2395532 2395729 -1 19 0.010101010101010102 198 2 "NADH:ubiquinone oxidoreductase and chain E" +BW25113_2285__3prime nuoE__3prime 0 2394833 2395030 -1 110 0.020202020202020204 198 4 "NADH:ubiquinone oxidoreductase and chain E" +BW25113_2286 nuoC 0 2395534 2397324 -1 919 0.03573422668900056 1791 64 "NADH:ubiquinone oxidoreductase and fused CD subunit" +BW25113_2286__5prime nuoC__5prime 0 2397325 2397522 -1 73 0.020202020202020204 198 4 "NADH:ubiquinone oxidoreductase and fused CD subunit" +BW25113_2286__3prime nuoC__3prime 0 2395336 2395533 -1 92 0.050505050505050504 198 10 "NADH:ubiquinone oxidoreductase and fused CD subunit" +BW25113_2287 nuoB 0 2397430 2398092 -1 381 0.030165912518853696 663 20 "NADH:ubiquinone oxidoreductase and chain B" +BW25113_2287__5prime nuoB__5prime 0 2398093 2398290 -1 120 0.03535353535353535 198 7 "NADH:ubiquinone oxidoreductase and chain B" +BW25113_2287__3prime nuoB__3prime 0 2397232 2397429 -1 68 0.015151515151515152 198 3 "NADH:ubiquinone oxidoreductase and chain B" +BW25113_2288 nuoA 0 2398108 2398551 -1 332 0.04954954954954955 444 22 "NADH:ubiquinone oxidoreductase and membrane subunit A" +BW25113_2288__5prime nuoA__5prime 0 2398552 2398749 -1 0 0.0 198 0 "NADH:ubiquinone oxidoreductase and membrane subunit A" +BW25113_2288__3prime nuoA__3prime 0 2397910 2398107 -1 150 0.020202020202020204 198 4 "NADH:ubiquinone oxidoreductase and membrane subunit A" +BW25113_2289 lrhA 0 2399182 2400120 -1 4482 0.18210862619808307 939 171 "transcriptional repressor of flagellar and motility and chemotaxis genes" +BW25113_2289__5prime lrhA__5prime 0 2400121 2400318 -1 5983 0.3333333333333333 198 66 "transcriptional repressor of flagellar and motility and chemotaxis genes" +BW25113_2289__3prime lrhA__3prime 0 2398984 2399181 -1 64 0.025252525252525252 198 5 "transcriptional repressor of flagellar and motility and chemotaxis genes" +BW25113_2290 alaA 0 2401040 2402257 1 4239 0.15435139573070608 1218 188 "valine-pyruvate aminotransferase 2" +BW25113_2290__5prime alaA__5prime 0 2400842 2401039 1 1737 0.31313131313131315 198 62 "valine-pyruvate aminotransferase 2" +BW25113_2290__3prime alaA__3prime 0 2402258 2402455 1 485 0.08080808080808081 198 16 "valine-pyruvate aminotransferase 2" +2402270_2402289 2402270_2402289 0 2402271 2402289 1 0 0.0 19 0 "2402270_2402289" +2402270_2402289__5prime 2402270_2402289__5prime 0 2402073 2402270 1 416 0.1111111111111111 198 22 "2402270_2402289" +2402270_2402289__3prime 2402270_2402289__3prime 0 2402290 2402487 1 506 0.09090909090909091 198 18 "2402270_2402289" +BW25113_2291 yfbR 0 2402341 2402940 1 695 0.051666666666666666 600 31 '"5''-nucleotidase"' +BW25113_2291__5prime yfbR__5prime 0 2402143 2402340 1 466 0.10101010101010101 198 20 '"5''-nucleotidase"' +BW25113_2291__3prime yfbR__3prime 0 2402941 2403138 1 194 0.05555555555555555 198 11 '"5''-nucleotidase"' +2402670_2403877 2402670_2403877 0 2402671 2403877 1 1587 0.07870753935376967 1207 95 "2402670_2403877" +2402670_2403877__5prime 2402670_2403877__5prime 0 2402473 2402670 1 281 0.08080808080808081 198 16 "2402670_2403877" +2402670_2403877__3prime 2402670_2403877__3prime 0 2403878 2404075 1 314 0.03535353535353535 198 7 "2402670_2403877" +2402974_2402993 2402974_2402993 0 2402975 2402993 1 70 0.05263157894736842 19 1 "2402974_2402993" +2402974_2402993__5prime 2402974_2402993__5prime 0 2402777 2402974 1 125 0.04040404040404041 198 8 "2402974_2402993" +2402974_2402993__3prime 2402974_2402993__3prime 0 2402994 2403191 1 124 0.04040404040404041 198 8 "2402974_2402993" +BW25113_2292 yfbS 0 2402999 2404831 -1 2987 0.08183306055646482 1833 150 "putative transporter" +BW25113_2292__5prime yfbS__5prime 0 2404832 2405029 -1 246 0.1111111111111111 198 22 "putative transporter" +BW25113_2292__3prime yfbS__3prime 0 2402801 2402998 -1 195 0.045454545454545456 198 9 "putative transporter" +BW25113_2293 yfbT 0 2404918 2405568 -1 1318 0.0967741935483871 651 63 "sugar phosphatas" +BW25113_2293__5prime yfbT__5prime 0 2405569 2405766 -1 446 0.09090909090909091 198 18 "sugar phosphatas" +BW25113_2293__3prime yfbT__3prime 0 2404720 2404917 -1 173 0.09090909090909091 198 18 "sugar phosphatas" +BW25113_2294 yfbU 0 2405579 2406073 -1 979 0.09292929292929293 495 46 "UPF0304 family protein" +BW25113_2294__5prime yfbU__5prime 0 2406074 2406271 -1 777 0.18181818181818182 198 36 "UPF0304 family protein" +BW25113_2294__3prime yfbU__3prime 0 2405381 2405578 -1 441 0.12121212121212122 198 24 "UPF0304 family protein" +BW25113_2295 yfbV 0 2406156 2406611 -1 1039 0.09649122807017543 456 44 "UPF0208 family inner membrane protein" +BW25113_2295__5prime yfbV__5prime 0 2406612 2406809 -1 392 0.09595959595959595 198 19 "UPF0208 family inner membrane protein" +BW25113_2295__3prime yfbV__3prime 0 2405958 2406155 -1 695 0.16666666666666666 198 33 "UPF0208 family inner membrane protein" +BW25113_2296 ackA 0 2406949 2408151 1 908 0.051537822111388194 1203 62 "acetate kinase A and propionate kinase 2" +BW25113_2296__5prime ackA__5prime 0 2406751 2406948 1 154 0.050505050505050504 198 10 "acetate kinase A and propionate kinase 2" +BW25113_2296__3prime ackA__3prime 0 2408152 2408349 1 73 0.030303030303030304 198 6 "acetate kinase A and propionate kinase 2" +BW25113_2297 pta 0 2408226 2410370 1 1631 0.05081585081585081 2145 109 "phosphate acetyltransferase" +BW25113_2297__5prime pta__5prime 0 2408028 2408225 1 20 0.010101010101010102 198 2 "phosphate acetyltransferase" +BW25113_2297__3prime pta__3prime 0 2410371 2410568 1 416 0.045454545454545456 198 9 "phosphate acetyltransferase" +BW25113_2298 yfcC 0 2410560 2412080 1 3367 0.09861932938856016 1521 150 "putative inner membrane transporter and C4-dicarboxylate anaerobic carrier family" +BW25113_2298__5prime yfcC__5prime 0 2410362 2410559 1 416 0.045454545454545456 198 9 "putative inner membrane transporter and C4-dicarboxylate anaerobic carrier family" +BW25113_2298__3prime yfcC__3prime 0 2412081 2412278 1 102 0.030303030303030304 198 6 "putative inner membrane transporter and C4-dicarboxylate anaerobic carrier family" +BW25113_2299 yfcD 0 2412113 2412655 -1 973 0.07550644567219153 543 41 "putative NUDIX hydrolase" +BW25113_2299__5prime yfcD__5prime 0 2412656 2412853 -1 689 0.08585858585858586 198 17 "putative NUDIX hydrolase" +BW25113_2299__3prime yfcD__3prime 0 2411915 2412112 -1 380 0.09090909090909091 198 18 "putative NUDIX hydrolase" +BW25113_2300 yfcE 0 2412713 2413267 -1 1078 0.07567567567567568 555 42 "phosphodiesterase activity on bis-pNPP" +BW25113_2300__5prime yfcE__5prime 0 2413268 2413465 -1 232 0.045454545454545456 198 9 "phosphodiesterase activity on bis-pNPP" +BW25113_2300__3prime yfcE__3prime 0 2412515 2412712 -1 563 0.10101010101010101 198 20 "phosphodiesterase activity on bis-pNPP" +BW25113_2301 yfcF 0 2413320 2413964 -1 670 0.06201550387596899 645 40 "glutathione S-transferase" +BW25113_2301__5prime yfcF__5prime 0 2413965 2414162 -1 324 0.10606060606060606 198 21 "glutathione S-transferase" +BW25113_2301__3prime yfcF__3prime 0 2413122 2413319 -1 148 0.04040404040404041 198 8 "glutathione S-transferase" +BW25113_2302 yfcG 0 2414100 2414747 1 1479 0.09722222222222222 648 63 "GSH-dependent disulfide bond oxidoreductase" +BW25113_2302__5prime yfcG__5prime 0 2413902 2414099 1 359 0.1111111111111111 198 22 "GSH-dependent disulfide bond oxidoreductase" +BW25113_2302__3prime yfcG__3prime 0 2414748 2414945 1 847 0.24242424242424243 198 48 "GSH-dependent disulfide bond oxidoreductase" +BW25113_2303 folX 0 2414804 2415166 1 2560 0.2534435261707989 363 92 '"D-erythro-7 and 8-dihydroneopterin triphosphate 2''-epimerase and dihydroneopterin aldolase"' +BW25113_2303__5prime folX__5prime 0 2414606 2414803 1 646 0.16161616161616163 198 32 '"D-erythro-7 and 8-dihydroneopterin triphosphate 2''-epimerase and dihydroneopterin aldolase"' +BW25113_2303__3prime folX__3prime 0 2415167 2415364 1 748 0.15151515151515152 198 30 '"D-erythro-7 and 8-dihydroneopterin triphosphate 2''-epimerase and dihydroneopterin aldolase"' +BW25113_2304 yfcH 0 2415187 2416080 1 2114 0.10850111856823266 894 97 "putative NAD-dependent nucleotide-sugar epimerase" +BW25113_2304__5prime yfcH__5prime 0 2414989 2415186 1 1663 0.2676767676767677 198 53 "putative NAD-dependent nucleotide-sugar epimerase" +BW25113_2304__3prime yfcH__3prime 0 2416081 2416278 1 1220 0.26262626262626265 198 52 "putative NAD-dependent nucleotide-sugar epimerase" +BW25113_2305 yfcI 0 2416128 2417018 -1 6903 0.2615039281705948 891 233 "transposase_31 family protein" +BW25113_2305__5prime yfcI__5prime 0 2417019 2417216 -1 506 0.11616161616161616 198 23 "transposase_31 family protein" +BW25113_2305__3prime yfcI__3prime 0 2415930 2416127 -1 558 0.13636363636363635 198 27 "transposase_31 family protein" +BW25113_2306 hisP 0 2417215 2417988 -1 2883 0.12790697674418605 774 99 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2306__5prime hisP__5prime 0 2417989 2418186 -1 318 0.08585858585858586 198 17 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2306__3prime hisP__3prime 0 2417017 2417214 -1 506 0.11616161616161616 198 23 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2307 hisM 0 2417996 2418712 -1 2315 0.12412831241283125 717 89 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2307__5prime hisM__5prime 0 2418713 2418910 -1 865 0.16161616161616163 198 32 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2307__3prime hisM__3prime 0 2417798 2417995 -1 488 0.06565656565656566 198 13 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2308 hisQ 0 2418709 2419395 -1 2404 0.11790393013100436 687 81 "histidine/lysine/arginine/ornithine transporter permease subunit" +BW25113_2308__5prime hisQ__5prime 0 2419396 2419593 -1 312 0.08585858585858586 198 17 "histidine/lysine/arginine/ornithine transporter permease subunit" +BW25113_2308__3prime hisQ__3prime 0 2418511 2418708 -1 228 0.06060606060606061 198 12 "histidine/lysine/arginine/ornithine transporter permease subunit" +BW25113_2309 hisJ 0 2419485 2420267 -1 1158 0.06513409961685823 783 51 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2309__5prime hisJ__5prime 0 2420268 2420465 -1 0 0.0 198 0 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2309__3prime hisJ__3prime 0 2419287 2419484 -1 498 0.09090909090909091 198 18 "histidine/lysine/arginine/ornithine transporter subunit" +BW25113_2310 argT 0 2420488 2421270 -1 1797 0.06896551724137931 783 54 "lysine/arginine/ornithine transporter subunit" +BW25113_2310__5prime argT__5prime 0 2421271 2421468 -1 229 0.045454545454545456 198 9 "lysine/arginine/ornithine transporter subunit" +BW25113_2310__3prime argT__3prime 0 2420290 2420487 -1 36 0.025252525252525252 198 5 "lysine/arginine/ornithine transporter subunit" +BW25113_2311 ubiX 0 2421536 2422105 -1 132 0.015789473684210527 570 9 "3-octaprenyl-4-hydroxybenzoate carboxy-lyase" +BW25113_2311__5prime ubiX__5prime 0 2422106 2422303 -1 292 0.06060606060606061 198 12 "3-octaprenyl-4-hydroxybenzoate carboxy-lyase" +BW25113_2311__3prime ubiX__3prime 0 2421338 2421535 -1 90 0.030303030303030304 198 6 "3-octaprenyl-4-hydroxybenzoate carboxy-lyase" +BW25113_2312 purF 0 2422200 2423717 -1 2053 0.061923583662714096 1518 94 "amidophosphoribosyltransferase" +BW25113_2312__5prime purF__5prime 0 2423718 2423915 -1 484 0.09595959595959595 198 19 "amidophosphoribosyltransferase" +BW25113_2312__3prime purF__3prime 0 2422002 2422199 -1 53 0.025252525252525252 198 5 "amidophosphoribosyltransferase" +BW25113_2313 cvpA 0 2423754 2424242 -1 1292 0.09815950920245399 489 48 "colicin V production membrane protein" +BW25113_2313__5prime cvpA__5prime 0 2424243 2424440 -1 188 0.0707070707070707 198 14 "colicin V production membrane protein" +BW25113_2313__3prime cvpA__3prime 0 2423556 2423753 -1 328 0.03535353535353535 198 7 "colicin V production membrane protein" +2424407_2424491 2424407_2424491 0 2424408 2424491 1 277 0.11904761904761904 84 10 "2424407_2424491" +2424407_2424491__5prime 2424407_2424491__5prime 0 2424210 2424407 1 268 0.09595959595959595 198 19 "2424407_2424491" +2424407_2424491__3prime 2424407_2424491__3prime 0 2424492 2424689 1 396 0.15656565656565657 198 31 "2424407_2424491" +BW25113_2314 dedD 0 2424501 2425163 -1 1251 0.08748114630467571 663 58 "membrane-anchored periplasmic protein involved in septation" +BW25113_2314__5prime dedD__5prime 0 2425164 2425361 -1 71 0.025252525252525252 198 5 "membrane-anchored periplasmic protein involved in septation" +BW25113_2314__3prime dedD__3prime 0 2424303 2424500 -1 386 0.08585858585858586 198 17 "membrane-anchored periplasmic protein involved in septation" +BW25113_2315 folC 0 2425153 2426421 -1 136 0.005516154452324665 1269 7 "bifunctional folylpolyglutamate synthase/ dihydrofolate synthase" +BW25113_2315__5prime folC__5prime 0 2426422 2426619 -1 103 0.03535353535353535 198 7 "bifunctional folylpolyglutamate synthase/ dihydrofolate synthase" +BW25113_2315__3prime folC__3prime 0 2424955 2425152 -1 216 0.030303030303030304 198 6 "bifunctional folylpolyglutamate synthase/ dihydrofolate synthase" +BW25113_2316 accD 0 2426491 2427405 -1 36 0.003278688524590164 915 3 "acetyl-CoA carboxylase and beta (carboxyltransferase) subunit" +BW25113_2316__5prime accD__5prime 0 2427406 2427603 -1 133 0.030303030303030304 198 6 "acetyl-CoA carboxylase and beta (carboxyltransferase) subunit" +BW25113_2316__3prime accD__3prime 0 2426293 2426490 -1 120 0.025252525252525252 198 5 "acetyl-CoA carboxylase and beta (carboxyltransferase) subunit" +BW25113_2317 dedA 0 2427561 2428220 -1 1499 0.0803030303030303 660 53 "DedA family inner membrane protein" +BW25113_2317__5prime dedA__5prime 0 2428221 2428418 -1 469 0.12121212121212122 198 24 "DedA family inner membrane protein" +BW25113_2317__3prime dedA__3prime 0 2427363 2427560 -1 127 0.025252525252525252 198 5 "DedA family inner membrane protein" +BW25113_2318 truA 0 2428303 2429115 -1 2744 0.13776137761377613 813 112 "tRNA pseudouridine(38-40) synthase" +BW25113_2318__5prime truA__5prime 0 2429116 2429313 -1 433 0.1111111111111111 198 22 "tRNA pseudouridine(38-40) synthase" +BW25113_2318__3prime truA__3prime 0 2428105 2428302 -1 361 0.1111111111111111 198 22 "tRNA pseudouridine(38-40) synthase" +BW25113_2319 usg 0 2429115 2430128 -1 1169 0.0670611439842209 1014 68 "putative semialdehyde dehydrogenase" +BW25113_2319__5prime usg__5prime 0 2430129 2430326 -1 450 0.09595959595959595 198 19 "putative semialdehyde dehydrogenase" +BW25113_2319__3prime usg__3prime 0 2428917 2429114 -1 768 0.13636363636363635 198 27 "putative semialdehyde dehydrogenase" +BW25113_2320 pdxB 0 2430194 2431330 -1 2281 0.0853122251539138 1137 97 "erythronate-4-phosphate dehydrogenase" +BW25113_2320__5prime pdxB__5prime 0 2431331 2431528 -1 392 0.10101010101010101 198 20 "erythronate-4-phosphate dehydrogenase" +BW25113_2320__3prime pdxB__3prime 0 2429996 2430193 -1 373 0.1111111111111111 198 22 "erythronate-4-phosphate dehydrogenase" +BW25113_2321 flk 0 2431429 2432424 1 2071 0.08835341365461848 996 88 "putative flagella assembly protein" +BW25113_2321__5prime flk__5prime 0 2431231 2431428 1 300 0.06565656565656566 198 13 "putative flagella assembly protein" +BW25113_2321__3prime flk__3prime 0 2432425 2432622 1 343 0.07575757575757576 198 15 "putative flagella assembly protein" +BW25113_2322 yfcJ 0 2432421 2433599 -1 1548 0.0720949957591179 1179 85 "putative arabinose efflux transporter" +BW25113_2322__5prime yfcJ__5prime 0 2433600 2433797 -1 477 0.08585858585858586 198 17 "putative arabinose efflux transporter" +BW25113_2322__3prime yfcJ__3prime 0 2432223 2432420 -1 441 0.10606060606060606 198 21 "putative arabinose efflux transporter" +2433821_2433857 2433821_2433857 0 2433822 2433857 1 5 0.027777777777777776 36 1 "2433821_2433857" +2433821_2433857__5prime 2433821_2433857__5prime 0 2433624 2433821 1 244 0.06565656565656566 198 13 "2433821_2433857" +2433821_2433857__3prime 2433821_2433857__3prime 0 2433858 2434055 1 28 0.005050505050505051 198 1 "2433821_2433857" +BW25113_2323 fabB 0 2433864 2435084 -1 28 0.000819000819000819 1221 1 "3-oxoacyl-[acyl-carrier-protein] synthase I" +BW25113_2323__5prime fabB__5prime 0 2435085 2435282 -1 1517 0.07575757575757576 198 15 "3-oxoacyl-[acyl-carrier-protein] synthase I" +BW25113_2323__3prime fabB__3prime 0 2433666 2433863 -1 195 0.06060606060606061 198 12 "3-oxoacyl-[acyl-carrier-protein] synthase I" +BW25113_2324 mnmC 0 2435243 2437249 1 4969 0.09516691579471849 2007 191 "fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme" +BW25113_2324__5prime mnmC__5prime 0 2435045 2435242 1 1174 0.045454545454545456 198 9 "fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme" +BW25113_2324__3prime mnmC__3prime 0 2437250 2437447 1 694 0.14646464646464646 198 29 "fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme" +2437267_2437347 2437267_2437347 0 2437268 2437347 1 438 0.1875 80 15 "2437267_2437347" +2437267_2437347__5prime 2437267_2437347__5prime 0 2437070 2437267 1 472 0.11616161616161616 198 23 "2437267_2437347" +2437267_2437347__3prime 2437267_2437347__3prime 0 2437348 2437545 1 526 0.15656565656565657 198 31 "2437267_2437347" +BW25113_2325 yfcL 0 2437370 2437648 -1 606 0.0967741935483871 279 27 "uncharacterized protein" +BW25113_2325__5prime yfcL__5prime 0 2437649 2437846 -1 266 0.07575757575757576 198 15 "uncharacterized protein" +BW25113_2325__3prime yfcL__3prime 0 2437172 2437369 -1 819 0.17676767676767677 198 35 "uncharacterized protein" +BW25113_2326 epmC 0 2437682 2438230 -1 763 0.06739526411657559 549 37 "Elongation Factor P Lys34 hydroxylase" +BW25113_2326__5prime epmC__5prime 0 2438231 2438428 -1 477 0.14646464646464646 198 29 "Elongation Factor P Lys34 hydroxylase" +BW25113_2326__3prime epmC__3prime 0 2437484 2437681 -1 425 0.09090909090909091 198 18 "Elongation Factor P Lys34 hydroxylase" +BW25113_2327 yfcA 0 2438230 2439039 -1 1948 0.13703703703703704 810 111 "UPF0721 family inner membrane protein" +BW25113_2327__5prime yfcA__5prime 0 2439040 2439237 -1 376 0.08585858585858586 198 17 "UPF0721 family inner membrane protein" +BW25113_2327__3prime yfcA__3prime 0 2438032 2438229 -1 301 0.08585858585858586 198 17 "UPF0721 family inner membrane protein" +BW25113_2328 mepA 0 2439039 2439863 -1 1181 0.08 825 66 "murein DD-endopeptidase" +BW25113_2328__5prime mepA__5prime 0 2439864 2440061 -1 163 0.04040404040404041 198 8 "murein DD-endopeptidase" +BW25113_2328__3prime mepA__3prime 0 2438841 2439038 -1 496 0.1414141414141414 198 28 "murein DD-endopeptidase" +BW25113_2329 aroC 0 2439867 2440952 -1 1513 0.06998158379373849 1086 76 "chorismate synthase" +BW25113_2329__5prime aroC__5prime 0 2440953 2441150 -1 480 0.09595959595959595 198 19 "chorismate synthase" +BW25113_2329__3prime aroC__3prime 0 2439669 2439866 -1 209 0.07575757575757576 198 15 "chorismate synthase" +BW25113_2330 prmB 0 2440987 2441919 -1 1159 0.06430868167202572 933 60 "N5-glutamine methyltransferase" +BW25113_2330__5prime prmB__5prime 0 2441920 2442117 -1 210 0.10101010101010101 198 20 "N5-glutamine methyltransferase" +BW25113_2330__3prime prmB__3prime 0 2440789 2440986 -1 617 0.11616161616161616 198 23 "N5-glutamine methyltransferase" +BW25113_2331 smrB 0 2442085 2442636 1 1204 0.12318840579710146 552 68 "putative DNA endonuclease" +BW25113_2331__5prime smrB__5prime 0 2441887 2442084 1 123 0.05555555555555555 198 11 "putative DNA endonuclease" +BW25113_2331__3prime smrB__3prime 0 2442637 2442834 1 960 0.21212121212121213 198 42 "putative DNA endonuclease" +BW25113_2332 yfcO 0 2442707 2443528 -1 5869 0.23479318734793186 822 193 "DUF2544 family putative outer membrane protein" +BW25113_2332__5prime yfcO__5prime 0 2443529 2443726 -1 651 0.20202020202020202 198 40 "DUF2544 family putative outer membrane protein" +BW25113_2332__3prime yfcO__3prime 0 2442509 2442706 -1 525 0.12121212121212122 198 24 "DUF2544 family putative outer membrane protein" +BW25113_2333 yfcP 0 2443530 2444069 -1 2265 0.20555555555555555 540 111 "putative fimbrial-like adhesin protein" +BW25113_2333__5prime yfcP__5prime 0 2444070 2444267 -1 1049 0.2222222222222222 198 44 "putative fimbrial-like adhesin protein" +BW25113_2333__3prime yfcP__3prime 0 2443332 2443529 -1 1148 0.19696969696969696 198 39 "putative fimbrial-like adhesin protein" +BW25113_2334 yfcQ 0 2444066 2444554 -1 1884 0.130879345603272 489 64 "putative fimbrial-like adhesin protein" +BW25113_2334__5prime yfcQ__5prime 0 2444555 2444752 -1 445 0.04040404040404041 198 8 "putative fimbrial-like adhesin protein" +BW25113_2334__3prime yfcQ__3prime 0 2443868 2444065 -1 891 0.2222222222222222 198 44 "putative fimbrial-like adhesin protein" +BW25113_2335 yfcR 0 2444551 2445063 -1 1583 0.10136452241715399 513 52 "putative fimbrial-like adhesin protein" +BW25113_2335__5prime yfcR__5prime 0 2445064 2445261 -1 240 0.06565656565656566 198 13 "putative fimbrial-like adhesin protein" +BW25113_2335__3prime yfcR__3prime 0 2444353 2444550 -1 227 0.050505050505050504 198 10 "putative fimbrial-like adhesin protein" +BW25113_2336 yfcS 0 2445063 2445815 -1 2185 0.099601593625498 753 75 "putative periplasmic pilin chaperone" +BW25113_2336__5prime yfcS__5prime 0 2445816 2446013 -1 501 0.06565656565656566 198 13 "putative periplasmic pilin chaperone" +BW25113_2336__3prime yfcS__3prime 0 2444865 2445062 -1 894 0.1717171717171717 198 34 "putative periplasmic pilin chaperone" +BW25113_4661 yfcU 0 2445835 2448480 -1 10579 0.15041572184429328 2646 398 "2445834_2448480" +BW25113_4661__5prime yfcU__5prime 0 2448481 2448678 -1 2572 0.32323232323232326 198 64 "2445834_2448480" +BW25113_4661__3prime yfcU__3prime 0 2445637 2445834 -1 924 0.12121212121212122 198 24 "2445834_2448480" +BW25113_2339 yfcV 0 2448562 2449125 -1 5052 0.2765957446808511 564 156 "putative fimbrial-like adhesin protein" +BW25113_2339__5prime yfcV__5prime 0 2449126 2449323 -1 432 0.09090909090909091 198 18 "putative fimbrial-like adhesin protein" +BW25113_2339__3prime yfcV__3prime 0 2448364 2448561 -1 3315 0.40404040404040403 198 80 "putative fimbrial-like adhesin protein" +BW25113_2340 sixA 0 2449806 2450291 -1 1036 0.10699588477366255 486 52 "phosphohistidine phosphatase" +BW25113_2340__5prime sixA__5prime 0 2450292 2450489 -1 37 0.025252525252525252 198 5 "phosphohistidine phosphatase" +BW25113_2340__3prime sixA__3prime 0 2449608 2449805 -1 782 0.15656565656565657 198 31 "phosphohistidine phosphatase" +BW25113_2341 fadJ 0 2450494 2452638 -1 3045 0.07272727272727272 2145 156 "fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase" +BW25113_2341__5prime fadJ__5prime 0 2452639 2452836 -1 149 0.07575757575757576 198 15 "fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase" +BW25113_2341__3prime fadJ__3prime 0 2450296 2450493 -1 99 0.030303030303030304 198 6 "fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase" +BW25113_2342 fadI 0 2452638 2453948 -1 2410 0.08237986270022883 1311 108 "beta-ketoacyl-CoA thiolase and anaerobic and subunit" +BW25113_2342__5prime fadI__5prime 0 2453949 2454146 -1 270 0.0707070707070707 198 14 "beta-ketoacyl-CoA thiolase and anaerobic and subunit" +BW25113_2342__3prime fadI__3prime 0 2452440 2452637 -1 88 0.04040404040404041 198 8 "beta-ketoacyl-CoA thiolase and anaerobic and subunit" +BW25113_2343 yfcZ 0 2454129 2454413 -1 143 0.0456140350877193 285 13 "UPF0381 family protein" +BW25113_2343__5prime yfcZ__5prime 0 2454414 2454611 -1 177 0.025252525252525252 198 5 "UPF0381 family protein" +BW25113_2343__3prime yfcZ__3prime 0 2453931 2454128 -1 318 0.08585858585858586 198 17 "UPF0381 family protein" +BW25113_2344 fadL 0 2454785 2456125 1 5749 0.17076808351976136 1341 229 "long-chain fatty acid outer membrane transporter" +BW25113_2344__5prime fadL__5prime 0 2454587 2454784 1 273 0.06060606060606061 198 12 "long-chain fatty acid outer membrane transporter" +BW25113_2344__3prime fadL__3prime 0 2456126 2456323 1 2136 0.41414141414141414 198 82 "long-chain fatty acid outer membrane transporter" +BW25113_2345 yfdF 0 2456491 2457549 1 4227 0.1510859301227573 1059 160 "uncharacterized protein" +BW25113_2345__5prime yfdF__5prime 0 2456293 2456490 1 879 0.21212121212121213 198 42 "uncharacterized protein" +BW25113_2345__3prime yfdF__3prime 0 2457550 2457747 1 144 0.045454545454545456 198 9 "uncharacterized protein" +BW25113_2346 mlaA 0 2457731 2458486 -1 2802 0.1388888888888889 756 105 "ABC transporter maintaining OM lipid asymmetry and OM lipoprotein component" +BW25113_2346__5prime mlaA__5prime 0 2458487 2458684 -1 839 0.13636363636363635 198 27 "ABC transporter maintaining OM lipid asymmetry and OM lipoprotein component" +BW25113_2346__3prime mlaA__3prime 0 2457533 2457730 -1 144 0.045454545454545456 198 9 "ABC transporter maintaining OM lipid asymmetry and OM lipoprotein component" +BW25113_2347 yfdC 0 2458780 2459712 1 3299 0.15112540192926044 933 141 "putative inner membrane protein" +BW25113_2347__5prime yfdC__5prime 0 2458582 2458779 1 398 0.07575757575757576 198 15 "putative inner membrane protein" +BW25113_2347__3prime yfdC__3prime 0 2459713 2459910 1 253 0.0707070707070707 198 14 "putative inner membrane protein" +BW25113_2348 argW 0 2459788 2459862 1 0 0.0 75 0 "tRNA-Arg" +BW25113_2348__5prime argW__5prime 0 2459590 2459787 1 354 0.11616161616161616 198 23 "tRNA-Arg" +BW25113_2348__3prime argW__3prime 0 2459863 2460060 1 186 0.045454545454545456 198 9 "tRNA-Arg" +2459863_2470078 2459863_2470078 0 2459864 2470078 1 49010 0.1568281938325991 10215 1602 "2459863_2470078" +2459863_2470078__5prime 2459863_2470078__5prime 0 2459666 2459863 1 263 0.08080808080808081 198 16 "2459863_2470078" +2459863_2470078__3prime 2459863_2470078__3prime 0 2470079 2470276 1 392 0.10101010101010101 198 20 "2459863_2470078" +BW25113_2349 intS 0 2460024 2461181 1 1890 0.08808290155440414 1158 102 "CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase" +BW25113_2349__5prime intS__5prime 0 2459826 2460023 1 186 0.045454545454545456 198 9 "CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase" +BW25113_2349__3prime intS__3prime 0 2461182 2461379 1 455 0.14646464646464646 198 29 "CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase" +BW25113_2350 gtrA 0 2461334 2461696 1 2315 0.24793388429752067 363 90 "CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase)" +BW25113_2350__5prime gtrA__5prime 0 2461136 2461333 1 378 0.1414141414141414 198 28 "CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase)" +BW25113_2350__3prime gtrA__3prime 0 2461697 2461894 1 373 0.16161616161616163 198 32 "CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase (flippase)" +BW25113_2351 gtrB 0 2461693 2462613 1 9775 0.32356134636264927 921 298 "CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase" +BW25113_2351__5prime gtrB__5prime 0 2461495 2461692 1 1561 0.30303030303030304 198 60 "CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase" +BW25113_2351__3prime gtrB__3prime 0 2462614 2462811 1 285 0.14646464646464646 198 29 "CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase" +BW25113_2352 gtrS 0 2462610 2463941 1 2340 0.10960960960960961 1332 146 "serotype-specific glucosyl transferase and CPS-53 (KpLE1) prophage" +BW25113_2352__5prime gtrS__5prime 0 2462412 2462609 1 1121 0.29797979797979796 198 59 "serotype-specific glucosyl transferase and CPS-53 (KpLE1) prophage" +BW25113_2352__3prime gtrS__3prime 0 2463942 2464139 1 1294 0.2878787878787879 198 57 "serotype-specific glucosyl transferase and CPS-53 (KpLE1) prophage" +BW25113_2353 tfaS 0 2464294 2464584 1 6200 0.4536082474226804 291 132 "2464293_2464584" +BW25113_2353__5prime tfaS__5prime 0 2464096 2464293 1 1544 0.29292929292929293 198 58 "2464293_2464584" +BW25113_2353__3prime tfaS__3prime 0 2464585 2464782 1 3155 0.3282828282828283 198 65 "2464293_2464584" +BW25113_2354 yfdK 0 2464556 2464996 -1 4322 0.2494331065759637 441 110 "CPS-53 (KpLE1) prophage; conserved protein" +BW25113_2354__5prime yfdK__5prime 0 2464997 2465194 -1 1432 0.1919191919191919 198 38 "CPS-53 (KpLE1) prophage; conserved protein" +BW25113_2354__3prime yfdK__3prime 0 2464358 2464555 -1 5192 0.4797979797979798 198 95 "CPS-53 (KpLE1) prophage; conserved protein" +BW25113_2355 yfdL 0 2465023 2465601 -1 3214 0.17271157167530224 579 100 "2465022_2465601" +BW25113_2355__5prime yfdL__5prime 0 2465602 2465799 -1 879 0.18181818181818182 198 36 "2465022_2465601" +BW25113_2355__3prime yfdL__3prime 0 2464825 2465022 -1 563 0.12121212121212122 198 24 "2465022_2465601" +BW25113_2356 yfdM 0 2465597 2465866 -1 1206 0.18518518518518517 270 50 "2465596_2465866" +BW25113_2356__5prime yfdM__5prime 0 2465867 2466064 -1 485 0.13636363636363635 198 27 "2465596_2465866" +BW25113_2356__3prime yfdM__3prime 0 2465399 2465596 -1 406 0.08080808080808081 198 16 "2465596_2465866" +BW25113_2357 yfdN 0 2465866 2466360 -1 887 0.08888888888888889 495 44 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2357__5prime yfdN__5prime 0 2466361 2466558 -1 531 0.12626262626262627 198 25 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2357__3prime yfdN__3prime 0 2465668 2465865 -1 907 0.16666666666666666 198 33 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2358 oweS 0 2466357 2467064 -1 1411 0.07768361581920905 708 55 "2466356_2467064" +BW25113_2358__5prime oweS__5prime 0 2467065 2467262 -1 811 0.1717171717171717 198 34 "2466356_2467064" +BW25113_2358__3prime oweS__3prime 0 2466159 2466356 -1 213 0.030303030303030304 198 6 "2466356_2467064" +BW25113_2359 yfdP 0 2467083 2467445 1 1014 0.10743801652892562 363 39 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2359__5prime yfdP__5prime 0 2466885 2467082 1 170 0.025252525252525252 198 5 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2359__3prime yfdP__3prime 0 2467446 2467643 1 731 0.13636363636363635 198 27 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2360 yfdQ 0 2467511 2468335 1 4050 0.1321212121212121 825 109 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2360__5prime yfdQ__5prime 0 2467313 2467510 1 263 0.05555555555555555 198 11 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2360__3prime yfdQ__3prime 0 2468336 2468533 1 768 0.11616161616161616 198 23 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2361 yfdR 0 2468463 2468999 1 3523 0.1340782122905028 537 72 "CPS-53 (KpLE1) prophage; conserved protein" +BW25113_2361__5prime yfdR__5prime 0 2468265 2468462 1 859 0.13131313131313133 198 26 "CPS-53 (KpLE1) prophage; conserved protein" +BW25113_2361__3prime yfdR__3prime 0 2469000 2469197 1 251 0.05555555555555555 198 11 "CPS-53 (KpLE1) prophage; conserved protein" +BW25113_2362 yfdS 0 2468990 2469352 1 823 0.0881542699724518 363 32 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2362__5prime yfdS__5prime 0 2468792 2468989 1 1517 0.15656565656565657 198 31 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2362__3prime yfdS__3prime 0 2469353 2469550 1 405 0.050505050505050504 198 10 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2363 yfdT 0 2469352 2469657 1 977 0.08496732026143791 306 26 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2363__5prime yfdT__5prime 0 2469154 2469351 1 609 0.12121212121212122 198 24 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_2363__3prime yfdT__3prime 0 2469658 2469855 1 1460 0.19696969696969696 198 39 "CPS-53 (KpLE1) prophage; uncharacterized protein" +BW25113_4545 ypdJ 0 2469660 2469710 1 791 0.3137254901960784 51 16 "2469659_2469710" +BW25113_4545__5prime ypdJ__5prime 0 2469462 2469659 1 803 0.11616161616161616 198 23 "2469659_2469710" +BW25113_4545__3prime ypdJ__3prime 0 2469711 2469908 1 953 0.14646464646464646 198 29 "2469659_2469710" +BW25113_4501 torI 0 2469789 2469989 1 1024 0.14925373134328357 201 30 "response regulator inhibitor for tor operon" +BW25113_4501__5prime torI__5prime 0 2469591 2469788 1 1086 0.15151515151515152 198 30 "response regulator inhibitor for tor operon" +BW25113_4501__3prime torI__3prime 0 2469990 2470187 1 161 0.05555555555555555 198 11 "response regulator inhibitor for tor operon" +BW25113_4643 pawZ 0 2470063 2470077 1 68 0.3333333333333333 15 5 "tRNA-OTHER" +BW25113_4643__5prime pawZ__5prime 0 2469865 2470062 1 475 0.06060606060606061 198 12 "tRNA-OTHER" +BW25113_4643__3prime pawZ__3prime 0 2470078 2470275 1 392 0.10101010101010101 198 20 "tRNA-OTHER" +BW25113_2364 dsdC 0 2470173 2471108 -1 1453 0.07905982905982906 936 74 "dsd operon activator; autorepressor" +BW25113_2364__5prime dsdC__5prime 0 2471109 2471306 -1 111 0.03535353535353535 198 7 "dsd operon activator; autorepressor" +BW25113_2364__3prime dsdC__3prime 0 2469975 2470172 -1 271 0.06060606060606061 198 12 "dsd operon activator; autorepressor" +BW25113_2365 dsdX 0 2471326 2472663 1 4221 0.1218236173393124 1338 163 "D-serine transporter" +BW25113_2365__5prime dsdX__5prime 0 2471128 2471325 1 126 0.050505050505050504 198 10 "D-serine transporter" +BW25113_2365__3prime dsdX__3prime 0 2472664 2472861 1 529 0.13131313131313133 198 26 "D-serine transporter" +BW25113_2366 dsdA 0 2472681 2474009 1 3178 0.1038374717832957 1329 138 "D-serine dehydratase" +BW25113_2366__5prime dsdA__5prime 0 2472483 2472680 1 403 0.11616161616161616 198 23 "D-serine dehydratase" +BW25113_2366__3prime dsdA__3prime 0 2474010 2474207 1 1432 0.22727272727272727 198 45 "D-serine dehydratase" +BW25113_2367 emrY 0 2474117 2475655 -1 11832 0.2651072124756335 1539 408 "putative multidrug efflux system" +BW25113_2367__5prime emrY__5prime 0 2475656 2475853 -1 4076 0.3838383838383838 198 76 "putative multidrug efflux system" +BW25113_2367__3prime emrY__3prime 0 2473919 2474116 -1 1957 0.2878787878787879 198 57 "putative multidrug efflux system" +BW25113_2368 emrK 0 2475655 2476818 -1 13831 0.3230240549828179 1164 376 "EmrKY-TolC multidrug resistance efflux pump and membrane fusion protein component" +BW25113_2368__5prime emrK__5prime 0 2476819 2477016 -1 1395 0.18686868686868688 198 37 "EmrKY-TolC multidrug resistance efflux pump and membrane fusion protein component" +BW25113_2368__3prime emrK__3prime 0 2475457 2475654 -1 3130 0.41919191919191917 198 83 "EmrKY-TolC multidrug resistance efflux pump and membrane fusion protein component" +BW25113_2369 evgA 0 2477234 2477848 1 4533 0.26991869918699185 615 166 "response regulator in two-component regulatory system with EvgS" +BW25113_2369__5prime evgA__5prime 0 2477036 2477233 1 820 0.16161616161616163 198 32 "response regulator in two-component regulatory system with EvgS" +BW25113_2369__3prime evgA__3prime 0 2477849 2478046 1 3606 0.4494949494949495 198 89 "response regulator in two-component regulatory system with EvgS" +BW25113_2370 evgS 0 2477853 2481446 1 29785 0.2793544796883695 3594 1004 "hybrid sensory histidine kinase in two-component regulatory system with EvgA" +BW25113_2370__5prime evgS__5prime 0 2477655 2477852 1 674 0.20202020202020202 198 40 "hybrid sensory histidine kinase in two-component regulatory system with EvgA" +BW25113_2370__3prime evgS__3prime 0 2481447 2481644 1 1962 0.3282828282828283 198 65 "hybrid sensory histidine kinase in two-component regulatory system with EvgA" +BW25113_2371 yfdE 0 2481502 2482647 -1 9236 0.2844677137870855 1146 326 "acetyl-CoA:oxalate CoA-transferase" +BW25113_2371__5prime yfdE__5prime 0 2482648 2482845 -1 2404 0.30303030303030304 198 60 "acetyl-CoA:oxalate CoA-transferase" +BW25113_2371__3prime yfdE__3prime 0 2481304 2481501 -1 1862 0.398989898989899 198 79 "acetyl-CoA:oxalate CoA-transferase" +BW25113_2372 yfdV 0 2482721 2483665 -1 8423 0.28465608465608466 945 269 "putative transporter" +BW25113_2372__5prime yfdV__5prime 0 2483666 2483863 -1 1795 0.2474747474747475 198 49 "putative transporter" +BW25113_2372__3prime yfdV__3prime 0 2482523 2482720 -1 634 0.16161616161616163 198 32 "putative transporter" +BW25113_2373 oxc 0 2483735 2485429 -1 16668 0.26607669616519175 1695 451 "oxalyl CoA decarboxylase and ThDP-dependent" +BW25113_2373__5prime oxc__5prime 0 2485430 2485627 -1 834 0.18181818181818182 198 36 "oxalyl CoA decarboxylase and ThDP-dependent" +BW25113_2373__3prime oxc__3prime 0 2483537 2483734 -1 604 0.12626262626262627 198 25 "oxalyl CoA decarboxylase and ThDP-dependent" +BW25113_2374 frc 0 2485483 2486733 -1 12474 0.2741806554756195 1251 343 "formyl-CoA transferase and NAD(P)-binding" +BW25113_2374__5prime frc__5prime 0 2486734 2486931 -1 261 0.05555555555555555 198 11 "formyl-CoA transferase and NAD(P)-binding" +BW25113_2374__3prime frc__3prime 0 2485285 2485482 -1 1390 0.25757575757575757 198 51 "formyl-CoA transferase and NAD(P)-binding" +BW25113_2375 yfdX 0 2487246 2487881 -1 7085 0.36477987421383645 636 232 "uncharacterized protein" +BW25113_2375__5prime yfdX__5prime 0 2487882 2488079 -1 778 0.1919191919191919 198 38 "uncharacterized protein" +BW25113_2375__3prime yfdX__3prime 0 2487048 2487245 -1 752 0.14646464646464646 198 29 "uncharacterized protein" +BW25113_2376 ypdI 0 2488177 2488452 1 1448 0.15942028985507245 276 44 "putative lipoprotein involved in colanic acid biosynthesis" +BW25113_2376__5prime ypdI__5prime 0 2487979 2488176 1 358 0.12121212121212122 198 24 "putative lipoprotein involved in colanic acid biosynthesis" +BW25113_2376__3prime ypdI__3prime 0 2488453 2488650 1 685 0.17676767676767677 198 35 "putative lipoprotein involved in colanic acid biosynthesis" +BW25113_2377 yfdY 0 2488529 2488771 -1 574 0.12345679012345678 243 30 "DUF2545 family putative inner membrane protein" +BW25113_2377__5prime yfdY__5prime 0 2488772 2488969 -1 89 0.03535353535353535 198 7 "DUF2545 family putative inner membrane protein" +BW25113_2377__3prime yfdY__3prime 0 2488331 2488528 -1 763 0.15656565656565657 198 31 "DUF2545 family putative inner membrane protein" +BW25113_2378 lpxP 0 2489124 2490044 1 1855 0.08686210640608034 921 80 "palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_2378__5prime lpxP__5prime 0 2488926 2489123 1 603 0.05555555555555555 198 11 "palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_2378__3prime lpxP__3prime 0 2490045 2490242 1 58 0.015151515151515152 198 3 "palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase" +BW25113_4680 ypdK 0 2490400 2490471 1 196 0.05555555555555555 72 4 "inner membrane protein" +BW25113_4680__5prime ypdK__5prime 0 2490202 2490399 1 147 0.04040404040404041 198 8 "inner membrane protein" +BW25113_4680__3prime ypdK__3prime 0 2490472 2490669 1 435 0.09090909090909091 198 18 "inner membrane protein" +BW25113_2379 alaC 0 2490536 2491774 -1 2460 0.0847457627118644 1239 105 "valine-pyruvate aminotransferase 3" +BW25113_2379__5prime alaC__5prime 0 2491775 2491972 -1 130 0.03535353535353535 198 7 "valine-pyruvate aminotransferase 3" +BW25113_2379__3prime alaC__3prime 0 2490338 2490535 -1 417 0.08585858585858586 198 17 "valine-pyruvate aminotransferase 3" +BW25113_2380 ypdA 0 2492150 2493847 1 3725 0.09069493521790342 1698 154 "sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system" +BW25113_2380__5prime ypdA__5prime 0 2491952 2492149 1 201 0.09090909090909091 198 18 "sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system" +BW25113_2380__3prime ypdA__3prime 0 2493848 2494045 1 676 0.0707070707070707 198 14 "sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system" +BW25113_2381 ypdB 0 2493862 2494596 1 1394 0.05986394557823129 735 44 "response regulator activating yhjX; pyruvate-responsive YpdAB two-component system" +BW25113_2381__5prime ypdB__5prime 0 2493664 2493861 1 378 0.1111111111111111 198 22 "response regulator activating yhjX; pyruvate-responsive YpdAB two-component system" +BW25113_2381__3prime ypdB__3prime 0 2494597 2494794 1 173 0.030303030303030304 198 6 "response regulator activating yhjX; pyruvate-responsive YpdAB two-component system" +BW25113_2382 ypdC 0 2494609 2495466 1 719 0.047785547785547784 858 41 "putative DNA-binding protein" +BW25113_2382__5prime ypdC__5prime 0 2494411 2494608 1 265 0.03535353535353535 198 7 "putative DNA-binding protein" +BW25113_2382__3prime ypdC__3prime 0 2495467 2495664 1 245 0.04040404040404041 198 8 "putative DNA-binding protein" +BW25113_2383 fryA 0 2495469 2497964 -1 2973 0.0673076923076923 2496 168 "putative PTS enzyme and Hpr component/enzyme I component/enzyme IIA component" +BW25113_2383__5prime fryA__5prime 0 2497965 2498162 -1 234 0.0707070707070707 198 14 "putative PTS enzyme and Hpr component/enzyme I component/enzyme IIA component" +BW25113_2383__3prime fryA__3prime 0 2495271 2495468 -1 162 0.050505050505050504 198 10 "putative PTS enzyme and Hpr component/enzyme I component/enzyme IIA component" +BW25113_2384 ypdE 0 2497989 2499026 -1 1621 0.08766859344894026 1038 91 "aminopeptidase" +BW25113_2384__5prime ypdE__5prime 0 2499027 2499224 -1 247 0.09090909090909091 198 18 "aminopeptidase" +BW25113_2384__3prime ypdE__3prime 0 2497791 2497988 -1 234 0.08080808080808081 198 16 "aminopeptidase" +BW25113_2385 ypdF 0 2499026 2500111 -1 2076 0.09208103130755065 1086 100 "Xaa-Pro aminopeptidase" +BW25113_2385__5prime ypdF__5prime 0 2500112 2500309 -1 480 0.13636363636363635 198 27 "Xaa-Pro aminopeptidase" +BW25113_2385__3prime ypdF__3prime 0 2498828 2499025 -1 759 0.1717171717171717 198 34 "Xaa-Pro aminopeptidase" +BW25113_2386 fryC 0 2500126 2501373 -1 2569 0.08012820512820513 1248 100 "putative enzyme IIC component of PTS" +BW25113_2386__5prime fryC__5prime 0 2501374 2501571 -1 125 0.0707070707070707 198 14 "putative enzyme IIC component of PTS" +BW25113_2386__3prime fryC__3prime 0 2499928 2500125 -1 435 0.1111111111111111 198 22 "putative enzyme IIC component of PTS" +BW25113_2387 fryB 0 2501395 2501721 -1 193 0.04892966360856269 327 16 "putative enzyme IIB component of PTS" +BW25113_2387__5prime fryB__5prime 0 2501722 2501919 -1 272 0.045454545454545456 198 9 "putative enzyme IIB component of PTS" +BW25113_2387__3prime fryB__3prime 0 2501197 2501394 -1 385 0.12121212121212122 198 24 "putative enzyme IIB component of PTS" +BW25113_2388 glk 0 2501940 2502905 -1 1553 0.08074534161490683 966 78 "glucokinase" +BW25113_2388__5prime glk__5prime 0 2502906 2503103 -1 441 0.11616161616161616 198 23 "glucokinase" +BW25113_2388__3prime glk__3prime 0 2501742 2501939 -1 272 0.045454545454545456 198 9 "glucokinase" +2501960_2502163 2501960_2502163 0 2501961 2502163 1 448 0.1330049261083744 203 27 "2501960_2502163" +2501960_2502163__5prime 2501960_2502163__5prime 0 2501763 2501960 1 379 0.06565656565656566 198 13 "2501960_2502163" +2501960_2502163__3prime 2501960_2502163__3prime 0 2502164 2502361 1 55 0.020202020202020204 198 4 "2501960_2502163" +BW25113_2389 yfeO 0 2503109 2504365 1 2668 0.11853619729514718 1257 149 "putative ion channel protein" +BW25113_2389__5prime yfeO__5prime 0 2502911 2503108 1 441 0.11616161616161616 198 23 "putative ion channel protein" +BW25113_2389__3prime yfeO__3prime 0 2504366 2504563 1 438 0.14646464646464646 198 29 "putative ion channel protein" +BW25113_2390 ypeC 0 2504480 2504806 1 1010 0.12232415902140673 327 40 "DUF2502 family putative periplasmic protein" +BW25113_2390__5prime ypeC__5prime 0 2504282 2504479 1 316 0.11616161616161616 198 23 "DUF2502 family putative periplasmic protein" +BW25113_2390__3prime ypeC__3prime 0 2504807 2505004 1 408 0.12626262626262627 198 25 "DUF2502 family putative periplasmic protein" +2504830_2504918 2504830_2504918 0 2504831 2504918 1 140 0.09090909090909091 88 8 "2504830_2504918" +2504830_2504918__5prime 2504830_2504918__5prime 0 2504633 2504830 1 727 0.12626262626262627 198 25 "2504830_2504918" +2504830_2504918__3prime 2504830_2504918__3prime 0 2504919 2505116 1 408 0.12121212121212122 198 24 "2504830_2504918" +BW25113_2392 mntH 0 2504947 2506185 -1 2118 0.07586763518966909 1239 94 "manganese/divalent cation transporter" +BW25113_2392__5prime mntH__5prime 0 2506186 2506383 -1 344 0.08080808080808081 198 16 "manganese/divalent cation transporter" +BW25113_2392__3prime mntH__3prime 0 2504749 2504946 -1 675 0.13636363636363635 198 27 "manganese/divalent cation transporter" +BW25113_2393 nupC 0 2506521 2507723 1 2468 0.08395677472984206 1203 101 "nucleoside (except guanosine) transporter" +BW25113_2393__5prime nupC__5prime 0 2506323 2506520 1 430 0.08585858585858586 198 17 "nucleoside (except guanosine) transporter" +BW25113_2393__3prime nupC__3prime 0 2507724 2507921 1 295 0.13131313131313133 198 26 "nucleoside (except guanosine) transporter" +BW25113_2394 insL1 0 2507810 2508922 1 2047 0.1509433962264151 1113 168 "IS186 transposase" +BW25113_2394__5prime insL1__5prime 0 2507612 2507809 1 682 0.10101010101010101 198 20 "IS186 transposase" +BW25113_2394__3prime insL1__3prime 0 2508923 2509120 1 634 0.1919191919191919 198 38 "IS186 transposase" +BW25113_2395 yfeA 0 2509122 2511311 -1 3569 0.0908675799086758 2190 199 "putative diguanylate cyclase" +BW25113_2395__5prime yfeA__5prime 0 2511312 2511509 -1 506 0.08080808080808081 198 16 "putative diguanylate cyclase" +BW25113_2395__3prime yfeA__3prime 0 2508924 2509121 -1 634 0.1919191919191919 198 38 "putative diguanylate cyclase" +BW25113_2396 alaX 0 2511520 2511595 -1 163 0.18421052631578946 76 14 "tRNA-Ala" +BW25113_2396__5prime alaX__5prime 0 2511596 2511793 -1 208 0.09090909090909091 198 18 "tRNA-Ala" +BW25113_2396__3prime alaX__3prime 0 2511322 2511519 -1 305 0.06060606060606061 198 12 "tRNA-Ala" +BW25113_2397 alaW 0 2511635 2511710 -1 152 0.18421052631578946 76 14 "tRNA-Ala" +BW25113_2397__5prime alaW__5prime 0 2511711 2511908 -1 39 0.010101010101010102 198 2 "tRNA-Ala" +BW25113_2397__3prime alaW__3prime 0 2511437 2511634 -1 419 0.12626262626262627 198 25 "tRNA-Ala" +BW25113_2398 yfeC 0 2511946 2512290 1 877 0.1391304347826087 345 48 "DUF1323 family putative DNA-binding protein" +BW25113_2398__5prime yfeC__5prime 0 2511748 2511945 1 79 0.045454545454545456 198 9 "DUF1323 family putative DNA-binding protein" +BW25113_2398__3prime yfeC__3prime 0 2512291 2512488 1 793 0.25252525252525254 198 50 "DUF1323 family putative DNA-binding protein" +BW25113_2399 yfeD 0 2512292 2512684 1 1572 0.21628498727735368 393 85 "DUF1323 family putative DNA-binding protein" +BW25113_2399__5prime yfeD__5prime 0 2512094 2512291 1 711 0.1919191919191919 198 38 "DUF1323 family putative DNA-binding protein" +BW25113_2399__3prime yfeD__3prime 0 2512685 2512882 1 207 0.05555555555555555 198 11 "DUF1323 family putative DNA-binding protein" +BW25113_2400 gltX 0 2512736 2514151 -1 112 0.0035310734463276836 1416 5 "glutamyl-tRNA synthetase" +BW25113_2400__5prime gltX__5prime 0 2514152 2514349 -1 172 0.020202020202020204 198 4 "glutamyl-tRNA synthetase" +BW25113_2400__3prime gltX__3prime 0 2512538 2512735 -1 443 0.13131313131313133 198 26 "glutamyl-tRNA synthetase" +2514272_2515617 2514272_2515617 0 2514273 2515617 1 1736 0.09368029739776952 1345 126 "2514272_2515617" +2514272_2515617__5prime 2514272_2515617__5prime 0 2514075 2514272 1 172 0.020202020202020204 198 4 "2514272_2515617" +2514272_2515617__3prime 2514272_2515617__3prime 0 2515618 2515815 1 2633 0.3888888888888889 198 77 "2514272_2515617" +BW25113_2401 valU 0 2514410 2514485 1 86 0.14473684210526316 76 11 "tRNA-Val" +BW25113_2401__5prime valU__5prime 0 2514212 2514409 1 179 0.025252525252525252 198 5 "tRNA-Val" +BW25113_2401__3prime valU__3prime 0 2514486 2514683 1 206 0.10606060606060606 198 21 "tRNA-Val" +BW25113_2403 valY 0 2514532 2514607 1 108 0.15789473684210525 76 12 "tRNA-Val" +BW25113_2403__5prime valY__5prime 0 2514334 2514531 1 93 0.06060606060606061 198 12 "tRNA-Val" +BW25113_2403__3prime valY__3prime 0 2514608 2514805 1 123 0.06060606060606061 198 12 "tRNA-Val" +BW25113_2404 lysV 0 2514612 2514687 1 98 0.11842105263157894 76 9 "tRNA-Lys" +BW25113_2404__5prime lysV__5prime 0 2514414 2514611 1 194 0.11616161616161616 198 23 "tRNA-Lys" +BW25113_2404__3prime lysV__3prime 0 2514688 2514885 1 154 0.08080808080808081 198 16 "tRNA-Lys" +2514896_2514925 2514896_2514925 0 2514897 2514925 1 0 0.0 29 0 "2514896_2514925" +2514896_2514925__5prime 2514896_2514925__5prime 0 2514699 2514896 1 154 0.08080808080808081 198 16 "2514896_2514925" +2514896_2514925__3prime 2514896_2514925__3prime 0 2514926 2515123 1 532 0.18686868686868688 198 37 "2514896_2514925" +BW25113_2405 xapR 0 2514952 2515836 -1 4501 0.17853107344632768 885 158 "transcriptional activator of xapAB" +BW25113_2405__5prime xapR__5prime 0 2515837 2516034 -1 576 0.14646464646464646 198 29 "transcriptional activator of xapAB" +BW25113_2405__3prime xapR__3prime 0 2514754 2514951 -1 205 0.1111111111111111 198 22 "transcriptional activator of xapAB" +BW25113_2406 xapB 0 2516088 2517344 -1 5219 0.14478918058870327 1257 182 "xanthosine transporter" +BW25113_2406__5prime xapB__5prime 0 2517345 2517542 -1 294 0.09090909090909091 198 18 "xanthosine transporter" +BW25113_2406__3prime xapB__3prime 0 2515890 2516087 -1 780 0.18686868686868688 198 37 "xanthosine transporter" +BW25113_2407 xapA 0 2517404 2518237 -1 2657 0.13908872901678657 834 116 "purine nucleoside phosphorylase II" +BW25113_2407__5prime xapA__5prime 0 2518238 2518435 -1 569 0.18686868686868688 198 37 "purine nucleoside phosphorylase II" +BW25113_2407__3prime xapA__3prime 0 2517206 2517403 -1 1013 0.20707070707070707 198 41 "purine nucleoside phosphorylase II" +BW25113_2408 yfeN 0 2518486 2519250 1 5465 0.24052287581699347 765 184 "putative outer membrane protein" +BW25113_2408__5prime yfeN__5prime 0 2518288 2518485 1 559 0.18686868686868688 198 37 "putative outer membrane protein" +BW25113_2408__3prime yfeN__3prime 0 2519251 2519448 1 618 0.1111111111111111 198 22 "putative outer membrane protein" +BW25113_2409 yfeR 0 2519289 2520215 -1 3227 0.13160733549083065 927 122 "transcriptional regulator of yefH" +BW25113_2409__5prime yfeR__5prime 0 2520216 2520413 -1 371 0.06565656565656566 198 13 "transcriptional regulator of yefH" +BW25113_2409__3prime yfeR__3prime 0 2519091 2519288 -1 586 0.11616161616161616 198 23 "transcriptional regulator of yefH" +BW25113_2410 yfeH 0 2520305 2521303 1 2202 0.0980980980980981 999 98 "putative inorganic ion transporter" +BW25113_2410__5prime yfeH__5prime 0 2520107 2520304 1 433 0.10101010101010101 198 20 "putative inorganic ion transporter" +BW25113_2410__3prime yfeH__3prime 0 2521304 2521501 1 180 0.09090909090909091 198 18 "putative inorganic ion transporter" +BW25113_4546 ypeB 0 2521300 2521518 -1 193 0.091324200913242 219 20 "DUF3820 family protein" +BW25113_4546__5prime ypeB__5prime 0 2521519 2521716 -1 0 0.0 198 0 "DUF3820 family protein" +BW25113_4546__3prime ypeB__3prime 0 2521102 2521299 -1 460 0.11616161616161616 198 23 "DUF3820 family protein" +BW25113_2411 ligA 0 2521520 2523535 -1 50 0.001984126984126984 2016 4 "DNA ligase and NAD(+)-dependent" +BW25113_2411__5prime ligA__5prime 0 2523536 2523733 -1 76 0.015151515151515152 198 3 "DNA ligase and NAD(+)-dependent" +BW25113_2411__3prime ligA__3prime 0 2521322 2521519 -1 174 0.08585858585858586 198 17 "DNA ligase and NAD(+)-dependent" +BW25113_2412 zipA 0 2523606 2524592 -1 28 0.0010131712259371835 987 1 "FtsZ stabilizer" +BW25113_2412__5prime zipA__5prime 0 2524593 2524790 -1 186 0.020202020202020204 198 4 "FtsZ stabilizer" +BW25113_2412__3prime zipA__3prime 0 2523408 2523605 -1 98 0.030303030303030304 198 6 "FtsZ stabilizer" +BW25113_2413 cysZ 0 2524822 2525583 1 1514 0.1036745406824147 762 79 "EI24 family inner membrane protein; putative sulfate transporter" +BW25113_2413__5prime cysZ__5prime 0 2524624 2524821 1 179 0.015151515151515152 198 3 "EI24 family inner membrane protein; putative sulfate transporter" +BW25113_2413__3prime cysZ__3prime 0 2525584 2525781 1 830 0.10101010101010101 198 20 "EI24 family inner membrane protein; putative sulfate transporter" +BW25113_2414 cysK 0 2525768 2526739 1 1828 0.09876543209876543 972 96 "cysteine synthase A and O-acetylserine sulfhydrolase A subunit" +BW25113_2414__5prime cysK__5prime 0 2525570 2525767 1 822 0.1111111111111111 198 22 "cysteine synthase A and O-acetylserine sulfhydrolase A subunit" +BW25113_2414__3prime cysK__3prime 0 2526740 2526937 1 45 0.015151515151515152 198 3 "cysteine synthase A and O-acetylserine sulfhydrolase A subunit" +BW25113_2415 ptsH 0 2527123 2527380 1 74 0.027131782945736434 258 7 "phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)" +BW25113_2415__5prime ptsH__5prime 0 2526925 2527122 1 403 0.13131313131313133 198 26 "phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)" +BW25113_2415__3prime ptsH__3prime 0 2527381 2527578 1 6 0.005050505050505051 198 1 "phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)" +BW25113_2416 ptsI 0 2527425 2529152 1 204 0.008680555555555556 1728 15 "PEP-protein phosphotransferase of PTS system (enzyme I)" +BW25113_2416__5prime ptsI__5prime 0 2527227 2527424 1 45 0.020202020202020204 198 4 "PEP-protein phosphotransferase of PTS system (enzyme I)" +BW25113_2416__3prime ptsI__3prime 0 2529153 2529350 1 46 0.030303030303030304 198 6 "PEP-protein phosphotransferase of PTS system (enzyme I)" +BW25113_2417 crr 0 2529193 2529702 1 150 0.01764705882352941 510 9 "glucose-specific enzyme IIA component of PTS" +BW25113_2417__5prime crr__5prime 0 2528995 2529192 1 0 0.0 198 0 "glucose-specific enzyme IIA component of PTS" +BW25113_2417__3prime crr__3prime 0 2529703 2529900 1 618 0.10606060606060606 198 21 "glucose-specific enzyme IIA component of PTS" +BW25113_2418 pdxK 0 2529745 2530596 -1 2238 0.09741784037558686 852 83 "pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase" +BW25113_2418__5prime pdxK__5prime 0 2530597 2530794 -1 305 0.07575757575757576 198 15 "pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase" +BW25113_2418__3prime pdxK__3prime 0 2529547 2529744 -1 99 0.010101010101010102 198 2 "pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase" +BW25113_2419 yfeK 0 2530701 2531075 1 935 0.136 375 51 "uncharacterized protein" +BW25113_2419__5prime yfeK__5prime 0 2530503 2530700 1 329 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_2419__3prime yfeK__3prime 0 2531076 2531273 1 128 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_2420 yfeS 0 2531108 2531842 1 2007 0.10476190476190476 735 77 "WGR domain protein" +BW25113_2420__5prime yfeS__5prime 0 2530910 2531107 1 368 0.10606060606060606 198 21 "WGR domain protein" +BW25113_2420__3prime yfeS__3prime 0 2531843 2532040 1 56 0.030303030303030304 198 6 "WGR domain protein" +2531893_2531991 2531893_2531991 0 2531894 2531991 1 23 0.04081632653061224 98 4 "2531893_2531991" +2531893_2531991__5prime 2531893_2531991__5prime 0 2531696 2531893 1 245 0.08585858585858586 198 17 "2531893_2531991" +2531893_2531991__3prime 2531893_2531991__3prime 0 2531992 2532189 1 106 0.03535353535353535 198 7 "2531893_2531991" +BW25113_2421 cysM 0 2532031 2532942 -1 641 0.043859649122807015 912 40 "cysteine synthase B (O-acetylserine sulfhydrolase B)" +BW25113_2421__5prime cysM__5prime 0 2532943 2533140 -1 203 0.050505050505050504 198 10 "cysteine synthase B (O-acetylserine sulfhydrolase B)" +BW25113_2421__3prime cysM__3prime 0 2531833 2532030 -1 56 0.030303030303030304 198 6 "cysteine synthase B (O-acetylserine sulfhydrolase B)" +2532965_2533001 2532965_2533001 0 2532966 2533001 1 66 0.1388888888888889 36 5 "2532965_2533001" +2532965_2533001__5prime 2532965_2533001__5prime 0 2532768 2532965 1 116 0.04040404040404041 198 8 "2532965_2533001" +2532965_2533001__3prime 2532965_2533001__3prime 0 2533002 2533199 1 214 0.04040404040404041 198 8 "2532965_2533001" +BW25113_2422 cysA 0 2533076 2534173 -1 2106 0.08469945355191257 1098 93 "sulfate/thiosulfate transporter subunit" +BW25113_2422__5prime cysA__5prime 0 2534174 2534371 -1 431 0.08080808080808081 198 16 "sulfate/thiosulfate transporter subunit" +BW25113_2422__3prime cysA__3prime 0 2532878 2533075 -1 178 0.045454545454545456 198 9 "sulfate/thiosulfate transporter subunit" +BW25113_2423 cysW 0 2534163 2535038 -1 1430 0.07648401826484018 876 67 "sulfate/thiosulfate ABC transporter subunit" +BW25113_2423__5prime cysW__5prime 0 2535039 2535236 -1 272 0.04040404040404041 198 8 "sulfate/thiosulfate ABC transporter subunit" +BW25113_2423__3prime cysW__3prime 0 2533965 2534162 -1 246 0.07575757575757576 198 15 "sulfate/thiosulfate ABC transporter subunit" +BW25113_2424 cysU 0 2535038 2535871 -1 1243 0.0539568345323741 834 45 "sulfate/thiosulfate ABC transporter permease" +BW25113_2424__5prime cysU__5prime 0 2535872 2536069 -1 364 0.11616161616161616 198 23 "sulfate/thiosulfate ABC transporter permease" +BW25113_2424__3prime cysU__3prime 0 2534840 2535037 -1 292 0.0707070707070707 198 14 "sulfate/thiosulfate ABC transporter permease" +BW25113_2425 cysP 0 2535871 2536887 -1 1575 0.08357915437561456 1017 85 "thiosulfate-binding protein" +BW25113_2425__5prime cysP__5prime 0 2536888 2537085 -1 270 0.025252525252525252 198 5 "thiosulfate-binding protein" +BW25113_2425__3prime cysP__3prime 0 2535673 2535870 -1 375 0.05555555555555555 198 11 "thiosulfate-binding protein" +BW25113_2426 ucpA 0 2537191 2537982 -1 1381 0.07954545454545454 792 63 "furfural resistance protein and putative short-chain oxidoreductase" +BW25113_2426__5prime ucpA__5prime 0 2537983 2538180 -1 536 0.10101010101010101 198 20 "furfural resistance protein and putative short-chain oxidoreductase" +BW25113_2426__3prime ucpA__3prime 0 2536993 2537190 -1 496 0.06565656565656566 198 13 "furfural resistance protein and putative short-chain oxidoreductase" +BW25113_2427 murR 0 2538111 2538968 -1 2098 0.07692307692307693 858 66 "repressor for murPQ and MurNAc 6-P inducible" +BW25113_2427__5prime murR__5prime 0 2538969 2539166 -1 564 0.08585858585858586 198 17 "repressor for murPQ and MurNAc 6-P inducible" +BW25113_2427__3prime murR__3prime 0 2537913 2538110 -1 643 0.10606060606060606 198 21 "repressor for murPQ and MurNAc 6-P inducible" +BW25113_2428 murQ 0 2539132 2540028 1 1565 0.06688963210702341 897 60 "N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase" +BW25113_2428__5prime murQ__5prime 0 2538934 2539131 1 499 0.08080808080808081 198 16 "N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase" +BW25113_2428__3prime murQ__3prime 0 2540029 2540226 1 336 0.11616161616161616 198 23 "N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase" +BW25113_2429 murP 0 2540032 2541456 1 4647 0.12982456140350876 1425 185 "N-acetylmuramic acid permease and EIIBC component and PTS system" +BW25113_2429__5prime murP__5prime 0 2539834 2540031 1 415 0.08585858585858586 198 17 "N-acetylmuramic acid permease and EIIBC component and PTS system" +BW25113_2429__3prime murP__3prime 0 2541457 2541654 1 147 0.045454545454545456 198 9 "N-acetylmuramic acid permease and EIIBC component and PTS system" +BW25113_2430 yfeW 0 2541461 2542765 1 2207 0.07662835249042145 1305 100 "penicillin binding protein PBP4B; weak DD-carboxypeptidase activity" +BW25113_2430__5prime yfeW__5prime 0 2541263 2541460 1 689 0.12626262626262627 198 25 "penicillin binding protein PBP4B; weak DD-carboxypeptidase activity" +BW25113_2430__3prime yfeW__3prime 0 2542766 2542963 1 245 0.06565656565656566 198 13 "penicillin binding protein PBP4B; weak DD-carboxypeptidase activity" +2542824_2542922 2542824_2542922 0 2542825 2542922 1 63 0.07142857142857142 98 7 "2542824_2542922" +2542824_2542922__5prime 2542824_2542922__5prime 0 2542627 2542824 1 467 0.06565656565656566 198 13 "2542824_2542922" +2542824_2542922__3prime 2542824_2542922__3prime 0 2542923 2543120 1 335 0.08080808080808081 198 16 "2542824_2542922" +BW25113_2431 yfeX 0 2543005 2543904 -1 1620 0.07777777777777778 900 70 "porphyrinogen oxidase and cytoplasmic" +BW25113_2431__5prime yfeX__5prime 0 2543905 2544102 -1 473 0.09595959595959595 198 19 "porphyrinogen oxidase and cytoplasmic" +BW25113_2431__3prime yfeX__3prime 0 2542807 2543004 -1 307 0.08585858585858586 198 17 "porphyrinogen oxidase and cytoplasmic" +BW25113_2432 yfeY 0 2544000 2544575 -1 1800 0.1111111111111111 576 64 "RpoE-regulated lipoprotein" +BW25113_2432__5prime yfeY__5prime 0 2544576 2544773 -1 180 0.03535353535353535 198 7 "RpoE-regulated lipoprotein" +BW25113_2432__3prime yfeY__3prime 0 2543802 2543999 -1 393 0.0707070707070707 198 14 "RpoE-regulated lipoprotein" +BW25113_2433 yfeZ 0 2544636 2545085 -1 1498 0.11333333333333333 450 51 "inner membrane protein" +BW25113_2433__5prime yfeZ__5prime 0 2545086 2545283 -1 278 0.05555555555555555 198 11 "inner membrane protein" +BW25113_2433__3prime yfeZ__3prime 0 2544438 2544635 -1 379 0.08585858585858586 198 17 "inner membrane protein" +BW25113_2434 ypeA 0 2545072 2545497 -1 642 0.07042253521126761 426 30 "putative acyl-CoA transferase" +BW25113_2434__5prime ypeA__5prime 0 2545498 2545695 -1 50 0.015151515151515152 198 3 "putative acyl-CoA transferase" +BW25113_2434__3prime ypeA__3prime 0 2544874 2545071 -1 1197 0.18686868686868688 198 37 "putative acyl-CoA transferase" +BW25113_2435 amiA 0 2545711 2546580 1 1609 0.07471264367816093 870 65 "N-acetylmuramoyl-l-alanine amidase I" +BW25113_2435__5prime amiA__5prime 0 2545513 2545710 1 50 0.015151515151515152 198 3 "N-acetylmuramoyl-l-alanine amidase I" +BW25113_2435__3prime amiA__3prime 0 2546581 2546778 1 363 0.11616161616161616 198 23 "N-acetylmuramoyl-l-alanine amidase I" +BW25113_2436 hemF 0 2546584 2547483 1 2038 0.12222222222222222 900 110 "coproporphyrinogen III oxidase" +BW25113_2436__5prime hemF__5prime 0 2546386 2546583 1 290 0.04040404040404041 198 8 "coproporphyrinogen III oxidase" +BW25113_2436__3prime hemF__3prime 0 2547484 2547681 1 313 0.05555555555555555 198 11 "coproporphyrinogen III oxidase" +BW25113_2437 eutR 0 2547489 2548541 -1 1217 0.060778727445394115 1053 64 "eut operon transcriptional activator and AraC family" +BW25113_2437__5prime eutR__5prime 0 2548542 2548739 -1 466 0.08585858585858586 198 17 "eut operon transcriptional activator and AraC family" +BW25113_2437__3prime eutR__3prime 0 2547291 2547488 -1 533 0.15656565656565657 198 31 "eut operon transcriptional activator and AraC family" +2548550_2548574 2548550_2548574 0 2548551 2548574 1 58 0.125 24 3 "2548550_2548574" +2548550_2548574__5prime 2548550_2548574__5prime 0 2548353 2548550 1 263 0.09090909090909091 198 18 "2548550_2548574" +2548550_2548574__3prime 2548550_2548574__3prime 0 2548575 2548772 1 426 0.07575757575757576 198 15 "2548550_2548574" +BW25113_2438 eutK 0 2548587 2549087 -1 1572 0.06986027944111776 501 35 "putative ethanol utilization carboxysome structural protein" +BW25113_2438__5prime eutK__5prime 0 2549088 2549285 -1 1303 0.14646464646464646 198 29 "putative ethanol utilization carboxysome structural protein" +BW25113_2438__3prime eutK__3prime 0 2548389 2548586 -1 320 0.09090909090909091 198 18 "putative ethanol utilization carboxysome structural protein" +BW25113_2439 eutL 0 2549100 2549759 -1 2095 0.08787878787878788 660 58 "putative ethanol utilization carboxysome structural protein" +BW25113_2439__5prime eutL__5prime 0 2549760 2549957 -1 185 0.050505050505050504 198 10 "putative ethanol utilization carboxysome structural protein" +BW25113_2439__3prime eutL__3prime 0 2548902 2549099 -1 1055 0.07575757575757576 198 15 "putative ethanol utilization carboxysome structural protein" +BW25113_2440 eutC 0 2549769 2550656 -1 1417 0.07657657657657657 888 68 "ethanolamine ammonia-lyase and small subunit (light chain)" +BW25113_2440__5prime eutC__5prime 0 2550657 2550854 -1 274 0.09090909090909091 198 18 "ethanolamine ammonia-lyase and small subunit (light chain)" +BW25113_2440__3prime eutC__3prime 0 2549571 2549768 -1 193 0.025252525252525252 198 5 "ethanolamine ammonia-lyase and small subunit (light chain)" +BW25113_2441 eutB 0 2550677 2552038 -1 2048 0.0697503671071953 1362 95 "ethanolamine ammonia-lyase and large subunit and heavy chain" +BW25113_2441__5prime eutB__5prime 0 2552039 2552236 -1 267 0.05555555555555555 198 11 "ethanolamine ammonia-lyase and large subunit and heavy chain" +BW25113_2441__3prime eutB__3prime 0 2550479 2550676 -1 134 0.030303030303030304 198 6 "ethanolamine ammonia-lyase and large subunit and heavy chain" +2552057_2558820 2552057_2558820 0 2552058 2558820 1 7704 0.05382226822416088 6763 364 "2552057_2558820" +2552057_2558820__5prime 2552057_2558820__5prime 0 2551860 2552057 1 342 0.06060606060606061 198 12 "2552057_2558820" +2552057_2558820__3prime 2552057_2558820__3prime 0 2558821 2559018 1 298 0.0707070707070707 198 14 "2552057_2558820" +BW25113_2442 intZ 0 2552217 2553425 1 2444 0.08602150537634409 1209 104 "CPZ-55 prophage; putative phage integrase" +BW25113_2442__5prime intZ__5prime 0 2552019 2552216 1 188 0.050505050505050504 198 10 "CPZ-55 prophage; putative phage integrase" +BW25113_2442__3prime intZ__3prime 0 2553426 2553623 1 0 0.0 198 0 "CPZ-55 prophage; putative phage integrase" +BW25113_2443 yffL 0 2553616 2554257 1 823 0.05451713395638629 642 35 "CPZ-55 prophage; uncharacterized protein" +BW25113_2443__5prime yffL__5prime 0 2553418 2553615 1 0 0.0 198 0 "CPZ-55 prophage; uncharacterized protein" +BW25113_2443__3prime yffL__3prime 0 2554258 2554455 1 117 0.030303030303030304 198 6 "CPZ-55 prophage; uncharacterized protein" +BW25113_2444 yffM 0 2554727 2554972 1 231 0.056910569105691054 246 14 "CPZ-55 prophage; uncharacterized protein" +BW25113_2444__5prime yffM__5prime 0 2554529 2554726 1 247 0.09090909090909091 198 18 "CPZ-55 prophage; uncharacterized protein" +BW25113_2444__3prime yffM__3prime 0 2554973 2555170 1 346 0.08080808080808081 198 16 "CPZ-55 prophage; uncharacterized protein" +BW25113_2445 yffN 0 2554984 2555352 1 709 0.07588075880758807 369 28 "CPZ-55 prophage; uncharacterized protein" +BW25113_2445__5prime yffN__5prime 0 2554786 2554983 1 65 0.025252525252525252 198 5 "CPZ-55 prophage; uncharacterized protein" +BW25113_2445__3prime yffN__3prime 0 2555353 2555550 1 0 0.0 198 0 "CPZ-55 prophage; uncharacterized protein" +BW25113_2446 yffO 0 2555470 2555886 1 455 0.04316546762589928 417 18 "CPZ-55 prophage; uncharacterized protein" +BW25113_2446__5prime yffO__5prime 0 2555272 2555469 1 229 0.030303030303030304 198 6 "CPZ-55 prophage; uncharacterized protein" +BW25113_2446__3prime yffO__3prime 0 2555887 2556084 1 419 0.12121212121212122 198 24 "CPZ-55 prophage; uncharacterized protein" +BW25113_2447 yffP 0 2555883 2556476 1 1063 0.07912457912457913 594 47 "CPZ-55 prophage; uncharacterized protein" +BW25113_2447__5prime yffP__5prime 0 2555685 2555882 1 322 0.06565656565656566 198 13 "CPZ-55 prophage; uncharacterized protein" +BW25113_2447__3prime yffP__3prime 0 2556477 2556674 1 13 0.010101010101010102 198 2 "CPZ-55 prophage; uncharacterized protein" +BW25113_2448 yffQ 0 2556951 2557328 1 80 0.018518518518518517 378 7 "CPZ-55 prophage; uncharacterized protein" +BW25113_2448__5prime yffQ__5prime 0 2556753 2556950 1 43 0.015151515151515152 198 3 "CPZ-55 prophage; uncharacterized protein" +BW25113_2448__3prime yffQ__3prime 0 2557329 2557526 1 492 0.15656565656565657 198 31 "CPZ-55 prophage; uncharacterized protein" +BW25113_2449 yffR 0 2557339 2557731 1 723 0.0916030534351145 393 36 "CPZ-55 prophage; uncharacterized protein" +BW25113_2449__5prime yffR__5prime 0 2557141 2557338 1 67 0.04040404040404041 198 8 "CPZ-55 prophage; uncharacterized protein" +BW25113_2449__3prime yffR__3prime 0 2557732 2557929 1 56 0.015151515151515152 198 3 "CPZ-55 prophage; uncharacterized protein" +BW25113_2450 yffS 0 2557882 2558691 1 213 0.016049382716049384 810 13 "CPZ-55 prophage; uncharacterized protein" +BW25113_2450__5prime yffS__5prime 0 2557684 2557881 1 112 0.025252525252525252 198 5 "CPZ-55 prophage; uncharacterized protein" +BW25113_2450__3prime yffS__3prime 0 2558692 2558889 1 163 0.03535353535353535 198 7 "CPZ-55 prophage; uncharacterized protein" +BW25113_2451 eutA 0 2558840 2560243 -1 1472 0.054843304843304845 1404 77 "reactivating factor for ethanolamine ammonia lyase" +BW25113_2451__5prime eutA__5prime 0 2560244 2560441 -1 236 0.05555555555555555 198 11 "reactivating factor for ethanolamine ammonia lyase" +BW25113_2451__3prime eutA__3prime 0 2558642 2558839 -1 163 0.03535353535353535 198 7 "reactivating factor for ethanolamine ammonia lyase" +BW25113_2452 eutH 0 2560240 2561466 -1 1819 0.06927465362673187 1227 85 "ethanolamine transporter" +BW25113_2452__5prime eutH__5prime 0 2561467 2561664 -1 459 0.12121212121212122 198 24 "ethanolamine transporter" +BW25113_2452__3prime eutH__3prime 0 2560042 2560239 -1 208 0.06565656565656566 198 13 "ethanolamine transporter" +2561497_2561680 2561497_2561680 0 2561498 2561680 1 344 0.1092896174863388 183 20 "2561497_2561680" +2561497_2561680__5prime 2561497_2561680__5prime 0 2561300 2561497 1 323 0.07575757575757576 198 15 "2561497_2561680" +2561497_2561680__3prime 2561497_2561680__3prime 0 2561681 2561878 1 510 0.07575757575757576 198 15 "2561497_2561680" +BW25113_2453 eutG 0 2561683 2562870 -1 3788 0.11616161616161616 1188 138 "ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase and converts acetaldehyde to ethanol" +BW25113_2453__5prime eutG__5prime 0 2562871 2563068 -1 264 0.08080808080808081 198 16 "ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase and converts acetaldehyde to ethanol" +BW25113_2453__3prime eutG__3prime 0 2561485 2561682 -1 459 0.12121212121212122 198 24 "ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase and converts acetaldehyde to ethanol" +BW25113_2454 eutJ 0 2562860 2563696 -1 1477 0.07646356033452807 837 64 "ethanolamine utilization protein and HSP70/actin superfamily protein" +BW25113_2454__5prime eutJ__5prime 0 2563697 2563894 -1 469 0.09090909090909091 198 18 "ethanolamine utilization protein and HSP70/actin superfamily protein" +BW25113_2454__3prime eutJ__3prime 0 2562662 2562859 -1 256 0.08585858585858586 198 17 "ethanolamine utilization protein and HSP70/actin superfamily protein" +BW25113_2455 eutE 0 2563707 2565110 -1 1605 0.051994301994301995 1404 73 "aldehyde oxidoreductase and ethanolamine utilization protein" +BW25113_2455__5prime eutE__5prime 0 2565111 2565308 -1 149 0.04040404040404041 198 8 "aldehyde oxidoreductase and ethanolamine utilization protein" +BW25113_2455__3prime eutE__3prime 0 2563509 2563706 -1 232 0.0707070707070707 198 14 "aldehyde oxidoreductase and ethanolamine utilization protein" +BW25113_2456 eutN 0 2565122 2565409 -1 192 0.03125 288 9 "Ethanolamine catabolic microcompartment shell protein" +BW25113_2456__5prime eutN__5prime 0 2565410 2565607 -1 543 0.12626262626262627 198 25 "Ethanolamine catabolic microcompartment shell protein" +BW25113_2456__3prime eutN__3prime 0 2564924 2565121 -1 318 0.07575757575757576 198 15 "Ethanolamine catabolic microcompartment shell protein" +BW25113_2457 eutM 0 2565516 2565809 -1 786 0.08163265306122448 294 24 "ethanolamine utilization protein and putative carboxysome structural protein" +BW25113_2457__5prime eutM__5prime 0 2565810 2566007 -1 397 0.09090909090909091 198 18 "ethanolamine utilization protein and putative carboxysome structural protein" +BW25113_2457__3prime eutM__3prime 0 2565318 2565515 -1 397 0.10606060606060606 198 21 "ethanolamine utilization protein and putative carboxysome structural protein" +BW25113_2458 eutD 0 2565848 2566864 -1 1888 0.08751229105211406 1017 89 "phosphate acetyltransferase" +BW25113_2458__5prime eutD__5prime 0 2566865 2567062 -1 446 0.09595959595959595 198 19 "phosphate acetyltransferase" +BW25113_2458__3prime eutD__3prime 0 2565650 2565847 -1 617 0.08585858585858586 198 17 "phosphate acetyltransferase" +BW25113_2459 eutT 0 2566861 2567664 -1 1668 0.08084577114427861 804 65 "cobalamin adenosyltransferase involved in ethanolamine utilization" +BW25113_2459__5prime eutT__5prime 0 2567665 2567862 -1 28 0.020202020202020204 198 4 "cobalamin adenosyltransferase involved in ethanolamine utilization" +BW25113_2459__3prime eutT__3prime 0 2566663 2566860 -1 749 0.15151515151515152 198 30 "cobalamin adenosyltransferase involved in ethanolamine utilization" +BW25113_2460 eutQ 0 2567661 2568362 -1 549 0.03561253561253561 702 25 "RmlC-like cupin domain protein" +BW25113_2460__5prime eutQ__5prime 0 2568363 2568560 -1 508 0.09595959595959595 198 19 "RmlC-like cupin domain protein" +BW25113_2460__3prime eutQ__3prime 0 2567463 2567660 -1 48 0.025252525252525252 198 5 "RmlC-like cupin domain protein" +BW25113_2461 eutP 0 2568337 2568816 -1 2835 0.22083333333333333 480 106 "putative P-loop NTPase ethanolamine utilization protein" +BW25113_2461__5prime eutP__5prime 0 2568817 2569014 -1 1217 0.1919191919191919 198 38 "putative P-loop NTPase ethanolamine utilization protein" +BW25113_2461__3prime eutP__3prime 0 2568139 2568336 -1 61 0.03535353535353535 198 7 "putative P-loop NTPase ethanolamine utilization protein" +BW25113_2462 eutS 0 2568829 2569164 -1 2383 0.16964285714285715 336 57 "putative ethanol utilization carboxysome structural protein" +BW25113_2462__5prime eutS__5prime 0 2569165 2569362 -1 550 0.10606060606060606 198 21 "putative ethanol utilization carboxysome structural protein" +BW25113_2462__3prime eutS__3prime 0 2568631 2568828 -1 843 0.24242424242424243 198 48 "putative ethanol utilization carboxysome structural protein" +BW25113_2463 maeB 0 2569457 2571736 -1 4897 0.0780701754385965 2280 178 "malic enzyme: putative oxidoreductase/putative phosphotransacetylase" +BW25113_2463__5prime maeB__5prime 0 2571737 2571934 -1 470 0.14646464646464646 198 29 "malic enzyme: putative oxidoreductase/putative phosphotransacetylase" +BW25113_2463__3prime maeB__3prime 0 2569259 2569456 -1 748 0.15656565656565657 198 31 "malic enzyme: putative oxidoreductase/putative phosphotransacetylase" +BW25113_2464 talA 0 2572025 2572975 1 1490 0.0946372239747634 951 90 "transaldolase A" +BW25113_2464__5prime talA__5prime 0 2571827 2572024 1 216 0.06060606060606061 198 12 "transaldolase A" +BW25113_2464__3prime talA__3prime 0 2572976 2573173 1 636 0.1414141414141414 198 28 "transaldolase A" +BW25113_2465 tktB 0 2572995 2574998 1 3753 0.06936127744510978 2004 139 "transketolase 2 and thiamine triphosphate-binding" +BW25113_2465__5prime tktB__5prime 0 2572797 2572994 1 302 0.09595959595959595 198 19 "transketolase 2 and thiamine triphosphate-binding" +BW25113_2465__3prime tktB__3prime 0 2574999 2575196 1 597 0.11616161616161616 198 23 "transketolase 2 and thiamine triphosphate-binding" +2575006_2575075 2575006_2575075 0 2575007 2575075 1 215 0.18840579710144928 69 13 "2575006_2575075" +2575006_2575075__5prime 2575006_2575075__5prime 0 2574809 2575006 1 315 0.06565656565656566 198 13 "2575006_2575075" +2575006_2575075__3prime 2575006_2575075__3prime 0 2575076 2575273 1 585 0.09595959595959595 198 19 "2575006_2575075" +BW25113_2466 ypfG 0 2575093 2576136 -1 2730 0.09770114942528736 1044 102 "DUF1176 family protein" +BW25113_2466__5prime ypfG__5prime 0 2576137 2576334 -1 31 0.020202020202020204 198 4 "DUF1176 family protein" +BW25113_2466__3prime ypfG__3prime 0 2574895 2575092 -1 427 0.10606060606060606 198 21 "DUF1176 family protein" +BW25113_2467 nudK 0 2576262 2576837 -1 1183 0.09722222222222222 576 56 "GDP-mannose pyrophosphatase" +BW25113_2467__5prime nudK__5prime 0 2576838 2577035 -1 132 0.050505050505050504 198 10 "GDP-mannose pyrophosphatase" +BW25113_2467__3prime nudK__3prime 0 2576064 2576261 -1 86 0.045454545454545456 198 9 "GDP-mannose pyrophosphatase" +BW25113_2468 aegA 0 2576905 2578884 -1 4039 0.08636363636363636 1980 171 "putative oxidoreductase and FeS binding subunit/NAD/FAD-binding subunit" +BW25113_2468__5prime aegA__5prime 0 2578885 2579082 -1 164 0.05555555555555555 198 11 "putative oxidoreductase and FeS binding subunit/NAD/FAD-binding subunit" +BW25113_2468__3prime aegA__3prime 0 2576707 2576904 -1 396 0.09595959595959595 198 19 "putative oxidoreductase and FeS binding subunit/NAD/FAD-binding subunit" +BW25113_2469 narQ 0 2579090 2580790 1 3736 0.09523809523809523 1701 162 "sensory histidine kinase in two-component regulatory system with NarP (NarL)" +BW25113_2469__5prime narQ__5prime 0 2578892 2579089 1 164 0.05555555555555555 198 11 "sensory histidine kinase in two-component regulatory system with NarP (NarL)" +BW25113_2469__3prime narQ__3prime 0 2580791 2580988 1 375 0.08585858585858586 198 17 "sensory histidine kinase in two-component regulatory system with NarP (NarL)" +BW25113_2470 acrD 0 2580954 2584067 1 6400 0.10083493898522801 3114 314 "aminoglycoside/multidrug efflux system" +BW25113_2470__5prime acrD__5prime 0 2580756 2580953 1 416 0.10606060606060606 198 21 "aminoglycoside/multidrug efflux system" +BW25113_2470__3prime acrD__3prime 0 2584068 2584265 1 351 0.07575757575757576 198 15 "aminoglycoside/multidrug efflux system" +BW25113_4606 ypfM 0 2584166 2584225 -1 70 0.13333333333333333 60 8 "stress-induced small enterobacterial protein" +BW25113_4606__5prime ypfM__5prime 0 2584226 2584423 -1 519 0.11616161616161616 198 23 "stress-induced small enterobacterial protein" +BW25113_4606__3prime ypfM__3prime 0 2583968 2584165 -1 273 0.06060606060606061 198 12 "stress-induced small enterobacterial protein" +BW25113_2471 yffB 0 2584606 2584962 1 1074 0.14285714285714285 357 51 "putative ArsC family reductase" +BW25113_2471__5prime yffB__5prime 0 2584408 2584605 1 41 0.005050505050505051 198 1 "putative ArsC family reductase" +BW25113_2471__3prime yffB__3prime 0 2584963 2585160 1 0 0.0 198 0 "putative ArsC family reductase" +BW25113_2472 dapE 0 2584966 2586093 1 0 0.0 1128 0 "N-succinyl-diaminopimelate deacylase" +BW25113_2472__5prime dapE__5prime 0 2584768 2584965 1 832 0.16666666666666666 198 33 "N-succinyl-diaminopimelate deacylase" +BW25113_2472__3prime dapE__3prime 0 2586094 2586291 1 795 0.12626262626262627 198 25 "N-succinyl-diaminopimelate deacylase" +BW25113_4547 ypfN 0 2586121 2586321 1 770 0.11940298507462686 201 24 "putative membrane protein and UPF0370 family" +BW25113_4547__5prime ypfN__5prime 0 2585923 2586120 1 25 0.005050505050505051 198 1 "putative membrane protein and UPF0370 family" +BW25113_4547__3prime ypfN__3prime 0 2586322 2586519 1 460 0.10101010101010101 198 20 "putative membrane protein and UPF0370 family" +2586336_2586419 2586336_2586419 0 2586337 2586419 1 223 0.12048192771084337 83 10 "2586336_2586419" +2586336_2586419__5prime 2586336_2586419__5prime 0 2586139 2586336 1 852 0.13636363636363635 198 27 "2586336_2586419" +2586336_2586419__3prime 2586336_2586419__3prime 0 2586420 2586617 1 291 0.06060606060606061 198 12 "2586336_2586419" +BW25113_2473 ypfH 0 2586431 2587129 -1 1208 0.09728183118741059 699 68 "palmitoyl-CoA esterase activity and uncertain physiological substrate" +BW25113_2473__5prime ypfH__5prime 0 2587130 2587327 -1 164 0.08585858585858586 198 17 "palmitoyl-CoA esterase activity and uncertain physiological substrate" +BW25113_2473__3prime ypfH__3prime 0 2586233 2586430 -1 980 0.14646464646464646 198 29 "palmitoyl-CoA esterase activity and uncertain physiological substrate" +BW25113_2474 tmcA 0 2587203 2589218 -1 3947 0.09027777777777778 2016 182 "elongator methionine tRNA (ac4C34) acetyltransferase" +BW25113_2474__5prime tmcA__5prime 0 2589219 2589416 -1 394 0.09595959595959595 198 19 "elongator methionine tRNA (ac4C34) acetyltransferase" +BW25113_2474__3prime tmcA__3prime 0 2587005 2587202 -1 292 0.10101010101010101 198 20 "elongator methionine tRNA (ac4C34) acetyltransferase" +BW25113_2475 ypfJ 0 2589233 2590096 -1 1837 0.10300925925925926 864 89 "putative neutral zinc metallopeptidase" +BW25113_2475__5prime ypfJ__5prime 0 2590097 2590294 -1 132 0.050505050505050504 198 10 "putative neutral zinc metallopeptidase" +BW25113_2475__3prime ypfJ__3prime 0 2589035 2589232 -1 639 0.09595959595959595 198 19 "putative neutral zinc metallopeptidase" +BW25113_2476 purC 0 2590264 2590977 -1 1540 0.10084033613445378 714 72 "phosphoribosylaminoimidazole-succinocarboxamide synthetase" +BW25113_2476__5prime purC__5prime 0 2590978 2591175 -1 6 0.005050505050505051 198 1 "phosphoribosylaminoimidazole-succinocarboxamide synthetase" +BW25113_2476__3prime purC__3prime 0 2590066 2590263 -1 119 0.04040404040404041 198 8 "phosphoribosylaminoimidazole-succinocarboxamide synthetase" +2591031_2591077 2591031_2591077 0 2591032 2591077 1 6 0.021739130434782608 46 1 "2591031_2591077" +2591031_2591077__5prime 2591031_2591077__5prime 0 2590834 2591031 1 543 0.08080808080808081 198 16 "2591031_2591077" +2591031_2591077__3prime 2591031_2591077__3prime 0 2591078 2591275 1 336 0.08585858585858586 198 17 "2591031_2591077" +BW25113_2477 bamC 0 2591190 2592224 -1 2576 0.09758454106280193 1035 101 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2477__5prime bamC__5prime 0 2592225 2592422 -1 69 0.020202020202020204 198 4 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2477__3prime bamC__3prime 0 2590992 2591189 -1 6 0.005050505050505051 198 1 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2478 dapA 0 2592241 2593119 -1 58 0.0022753128555176336 879 2 "dihydrodipicolinate synthase" +BW25113_2478__5prime dapA__5prime 0 2593120 2593317 -1 463 0.15656565656565657 198 31 "dihydrodipicolinate synthase" +BW25113_2478__3prime dapA__3prime 0 2592043 2592240 -1 660 0.12626262626262627 198 25 "dihydrodipicolinate synthase" +BW25113_2479 gcvR 0 2593265 2593837 1 1055 0.11867364746945899 573 68 "transcriptional repressor and regulatory protein accessory to GcvA" +BW25113_2479__5prime gcvR__5prime 0 2593067 2593264 1 275 0.10606060606060606 198 21 "transcriptional repressor and regulatory protein accessory to GcvA" +BW25113_2479__3prime gcvR__3prime 0 2593838 2594035 1 665 0.10101010101010101 198 20 "transcriptional repressor and regulatory protein accessory to GcvA" +BW25113_2480 bcp 0 2593837 2594307 1 1470 0.08917197452229299 471 42 "peroxiredoxin; thiol peroxidase and thioredoxin-dependent" +BW25113_2480__5prime bcp__5prime 0 2593639 2593836 1 444 0.12626262626262627 198 25 "peroxiredoxin; thiol peroxidase and thioredoxin-dependent" +BW25113_2480__3prime bcp__3prime 0 2594308 2594505 1 357 0.08080808080808081 198 16 "peroxiredoxin; thiol peroxidase and thioredoxin-dependent" +BW25113_2481 hyfA 0 2594560 2595177 1 1467 0.11326860841423948 618 70 "hydrogenase 4 and 4Fe-4S subunit" +BW25113_2481__5prime hyfA__5prime 0 2594362 2594559 1 262 0.07575757575757576 198 15 "hydrogenase 4 and 4Fe-4S subunit" +BW25113_2481__3prime hyfA__3prime 0 2595178 2595375 1 69 0.03535353535353535 198 7 "hydrogenase 4 and 4Fe-4S subunit" +BW25113_2482 hyfB 0 2595177 2597195 1 3906 0.0861812778603269 2019 174 "hydrogenase 4 and membrane subunit" +BW25113_2482__5prime hyfB__5prime 0 2594979 2595176 1 344 0.0707070707070707 198 14 "hydrogenase 4 and membrane subunit" +BW25113_2482__3prime hyfB__3prime 0 2597196 2597393 1 565 0.09595959595959595 198 19 "hydrogenase 4 and membrane subunit" +BW25113_2483 hyfC 0 2597206 2598153 1 1830 0.06645569620253164 948 63 "hydrogenase 4 and membrane subunit" +BW25113_2483__5prime hyfC__5prime 0 2597008 2597205 1 560 0.09090909090909091 198 18 "hydrogenase 4 and membrane subunit" +BW25113_2483__3prime hyfC__3prime 0 2598154 2598351 1 66 0.015151515151515152 198 3 "hydrogenase 4 and membrane subunit" +BW25113_2484 hyfD 0 2598170 2599609 1 2103 0.06736111111111111 1440 97 "hydrogenase 4 and membrane subunit" +BW25113_2484__5prime hyfD__5prime 0 2597972 2598169 1 324 0.05555555555555555 198 11 "hydrogenase 4 and membrane subunit" +BW25113_2484__3prime hyfD__3prime 0 2599610 2599807 1 448 0.09595959595959595 198 19 "hydrogenase 4 and membrane subunit" +BW25113_2485 hyfE 0 2599621 2600271 1 1545 0.07834101382488479 651 51 "hydrogenase 4 and membrane subunit" +BW25113_2485__5prime hyfE__5prime 0 2599423 2599620 1 114 0.030303030303030304 198 6 "hydrogenase 4 and membrane subunit" +BW25113_2485__3prime hyfE__3prime 0 2600272 2600469 1 421 0.1111111111111111 198 22 "hydrogenase 4 and membrane subunit" +BW25113_2486 hyfF 0 2600276 2601856 1 3785 0.10752688172043011 1581 170 "hydrogenase 4 and membrane subunit" +BW25113_2486__5prime hyfF__5prime 0 2600078 2600275 1 655 0.0707070707070707 198 14 "hydrogenase 4 and membrane subunit" +BW25113_2486__3prime hyfF__3prime 0 2601857 2602054 1 310 0.1111111111111111 198 22 "hydrogenase 4 and membrane subunit" +BW25113_2487 hyfG 0 2601846 2603513 1 3171 0.09592326139088729 1668 160 "hydrogenase 4 and subunit" +BW25113_2487__5prime hyfG__5prime 0 2601648 2601845 1 278 0.09090909090909091 198 18 "hydrogenase 4 and subunit" +BW25113_2487__3prime hyfG__3prime 0 2603514 2603711 1 286 0.06060606060606061 198 12 "hydrogenase 4 and subunit" +BW25113_2488 hyfH 0 2603523 2604068 1 1475 0.11172161172161173 546 61 "hydrogenase 4 and Fe-S subunit" +BW25113_2488__5prime hyfH__5prime 0 2603325 2603522 1 658 0.12626262626262627 198 25 "hydrogenase 4 and Fe-S subunit" +BW25113_2488__3prime hyfH__3prime 0 2604069 2604266 1 831 0.10606060606060606 198 21 "hydrogenase 4 and Fe-S subunit" +BW25113_2489 hyfI 0 2604065 2604823 1 1554 0.07509881422924901 759 57 "hydrogenase 4 and Fe-S subunit" +BW25113_2489__5prime hyfI__5prime 0 2603867 2604064 1 687 0.15151515151515152 198 30 "hydrogenase 4 and Fe-S subunit" +BW25113_2489__3prime hyfI__3prime 0 2604824 2605021 1 533 0.09090909090909091 198 18 "hydrogenase 4 and Fe-S subunit" +BW25113_2490 hyfJ 0 2604816 2605229 1 822 0.08695652173913043 414 36 "putative processing element hydrogenase 4" +BW25113_2490__5prime hyfJ__5prime 0 2604618 2604815 1 38 0.015151515151515152 198 3 "putative processing element hydrogenase 4" +BW25113_2490__3prime hyfJ__3prime 0 2605230 2605427 1 772 0.12121212121212122 198 24 "putative processing element hydrogenase 4" +BW25113_2491 hyfR 0 2605259 2607271 1 4318 0.08643815201192251 2013 174 "hydrogenase-4 transcriptional activator" +BW25113_2491__5prime hyfR__5prime 0 2605061 2605258 1 261 0.0707070707070707 198 14 "hydrogenase-4 transcriptional activator" +BW25113_2491__3prime hyfR__3prime 0 2607272 2607469 1 210 0.0707070707070707 198 14 "hydrogenase-4 transcriptional activator" +BW25113_2492 focB 0 2607293 2608141 1 1635 0.0812720848056537 849 69 "putative formate transporter" +BW25113_2492__5prime focB__5prime 0 2607095 2607292 1 339 0.08585858585858586 198 17 "putative formate transporter" +BW25113_2492__3prime focB__3prime 0 2608142 2608339 1 106 0.04040404040404041 198 8 "putative formate transporter" +BW25113_2493 yfgO 0 2608179 2609240 -1 1327 0.07815442561205273 1062 83 "putative UPF0118 family inner membrane permease" +BW25113_2493__5prime yfgO__5prime 0 2609241 2609438 -1 425 0.13131313131313133 198 26 "putative UPF0118 family inner membrane permease" +BW25113_2493__3prime yfgO__3prime 0 2607981 2608178 -1 495 0.08585858585858586 198 17 "putative UPF0118 family inner membrane permease" +BW25113_2494 bepA 0 2609453 2610916 1 3432 0.11133879781420765 1464 163 "periplasmic metalloprotease and chaperone for OM protein maintenance and assembly" +BW25113_2494__5prime bepA__5prime 0 2609255 2609452 1 625 0.17676767676767677 198 35 "periplasmic metalloprotease and chaperone for OM protein maintenance and assembly" +BW25113_2494__3prime bepA__3prime 0 2610917 2611114 1 419 0.11616161616161616 198 23 "periplasmic metalloprotease and chaperone for OM protein maintenance and assembly" +BW25113_2495 yfgD 0 2610937 2611296 1 617 0.09166666666666666 360 33 "putative oxidoreductase" +BW25113_2495__5prime yfgD__5prime 0 2610739 2610936 1 336 0.08585858585858586 198 17 "putative oxidoreductase" +BW25113_2495__3prime yfgD__3prime 0 2611297 2611494 1 476 0.10101010101010101 198 20 "putative oxidoreductase" +2611326_2611363 2611326_2611363 0 2611327 2611363 1 43 0.02702702702702703 37 1 "2611326_2611363" +2611326_2611363__5prime 2611326_2611363__5prime 0 2611129 2611326 1 435 0.09595959595959595 198 19 "2611326_2611363" +2611326_2611363__3prime 2611326_2611363__3prime 0 2611364 2611561 1 215 0.05555555555555555 198 11 "2611326_2611363" +BW25113_2496 hda 0 2611434 2612135 -1 208 0.017094017094017096 702 12 "ATPase regulatory factor involved in DnaA inactivation" +BW25113_2496__5prime hda__5prime 0 2612136 2612333 -1 103 0.050505050505050504 198 10 "ATPase regulatory factor involved in DnaA inactivation" +BW25113_2496__3prime hda__3prime 0 2611236 2611433 -1 450 0.11616161616161616 198 23 "ATPase regulatory factor involved in DnaA inactivation" +BW25113_2497 uraA 0 2612230 2613519 -1 2793 0.10232558139534884 1290 132 "uracil permease" +BW25113_2497__5prime uraA__5prime 0 2613520 2613717 -1 258 0.0707070707070707 198 14 "uracil permease" +BW25113_2497__3prime uraA__3prime 0 2612032 2612229 -1 63 0.025252525252525252 198 5 "uracil permease" +BW25113_2498 upp 0 2613605 2614231 -1 715 0.07496012759170653 627 47 "uracil phosphoribosyltransferase" +BW25113_2498__5prime upp__5prime 0 2614232 2614429 -1 151 0.05555555555555555 198 11 "uracil phosphoribosyltransferase" +BW25113_2498__3prime upp__3prime 0 2613407 2613604 -1 364 0.08585858585858586 198 17 "uracil phosphoribosyltransferase" +2614061_2614215 2614061_2614215 0 2614062 2614215 1 237 0.08441558441558442 154 13 "2614061_2614215" +2614061_2614215__5prime 2614061_2614215__5prime 0 2613864 2614061 1 194 0.0707070707070707 198 14 "2614061_2614215" +2614061_2614215__3prime 2614061_2614215__3prime 0 2614216 2614413 1 179 0.06060606060606061 198 12 "2614061_2614215" +BW25113_2499 purM 0 2614556 2615593 1 3742 0.12620423892100194 1038 131 "phosphoribosylaminoimidazole synthetase" +BW25113_2499__5prime purM__5prime 0 2614358 2614555 1 252 0.06565656565656566 198 13 "phosphoribosylaminoimidazole synthetase" +BW25113_2499__3prime purM__3prime 0 2615594 2615791 1 470 0.09595959595959595 198 19 "phosphoribosylaminoimidazole synthetase" +BW25113_2500 purN 0 2615593 2616231 1 1170 0.07981220657276995 639 51 "phosphoribosylglycinamide formyltransferase 1" +BW25113_2500__5prime purN__5prime 0 2615395 2615592 1 819 0.18686868686868688 198 37 "phosphoribosylglycinamide formyltransferase 1" +BW25113_2500__3prime purN__3prime 0 2616232 2616429 1 209 0.10606060606060606 198 21 "phosphoribosylglycinamide formyltransferase 1" +BW25113_2501 ppk 0 2616403 2618469 1 3185 0.09046927914852443 2067 187 "polyphosphate kinase and component of RNA degradosome" +BW25113_2501__5prime ppk__5prime 0 2616205 2616402 1 369 0.15151515151515152 198 30 "polyphosphate kinase and component of RNA degradosome" +BW25113_2501__3prime ppk__3prime 0 2618470 2618667 1 1070 0.1414141414141414 198 28 "polyphosphate kinase and component of RNA degradosome" +BW25113_2502 ppx 0 2618474 2620015 1 3368 0.10440985732814527 1542 161 "exopolyphosphatase" +BW25113_2502__5prime ppx__5prime 0 2618276 2618473 1 232 0.08080808080808081 198 16 "exopolyphosphatase" +BW25113_2502__3prime ppx__3prime 0 2620016 2620213 1 525 0.18686868686868688 198 37 "exopolyphosphatase" +BW25113_2503 yfgF 0 2620054 2622297 -1 9741 0.1680035650623886 2244 377 "cyclic-di-GMP phosphodiesterase and anaerobic" +BW25113_2503__5prime yfgF__5prime 0 2622298 2622495 -1 2074 0.2828282828282828 198 56 "cyclic-di-GMP phosphodiesterase and anaerobic" +BW25113_2503__3prime yfgF__3prime 0 2619856 2620053 -1 290 0.10101010101010101 198 20 "cyclic-di-GMP phosphodiesterase and anaerobic" +BW25113_2504 yfgG 0 2622649 2622840 1 1905 0.34375 192 66 "uncharacterized protein" +BW25113_2504__5prime yfgG__5prime 0 2622451 2622648 1 833 0.15656565656565657 198 31 "uncharacterized protein" +BW25113_2504__3prime yfgG__3prime 0 2622841 2623038 1 602 0.1717171717171717 198 34 "uncharacterized protein" +BW25113_2505 yfgH 0 2623151 2623669 1 4606 0.23121387283236994 519 120 "outer membrane integrity lipoprotein" +BW25113_2505__5prime yfgH__5prime 0 2622953 2623150 1 150 0.050505050505050504 198 10 "outer membrane integrity lipoprotein" +BW25113_2505__3prime yfgH__3prime 0 2623670 2623867 1 740 0.08585858585858586 198 17 "outer membrane integrity lipoprotein" +BW25113_2506 yfgI 0 2623685 2624224 1 1294 0.07037037037037037 540 38 "nalidixic acid resistance protein and putative periplasmic protein" +BW25113_2506__5prime yfgI__5prime 0 2623487 2623684 1 2006 0.21212121212121213 198 42 "nalidixic acid resistance protein and putative periplasmic protein" +BW25113_2506__3prime yfgI__3prime 0 2624225 2624422 1 265 0.08080808080808081 198 16 "nalidixic acid resistance protein and putative periplasmic protein" +BW25113_2507 guaA 0 2624317 2625894 -1 966 0.032953105196451206 1578 52 "GMP synthetase (glutamine aminotransferase)" +BW25113_2507__5prime guaA__5prime 0 2625895 2626092 -1 396 0.10101010101010101 198 20 "GMP synthetase (glutamine aminotransferase)" +BW25113_2507__3prime guaA__3prime 0 2624119 2624316 -1 302 0.10606060606060606 198 21 "GMP synthetase (glutamine aminotransferase)" +BW25113_2508 guaB 0 2625963 2627429 -1 2410 0.076346284935242 1467 112 "IMP dehydrogenase" +BW25113_2508__5prime guaB__5prime 0 2627430 2627627 -1 777 0.08080808080808081 198 16 "IMP dehydrogenase" +BW25113_2508__3prime guaB__3prime 0 2625765 2625962 -1 178 0.04040404040404041 198 8 "IMP dehydrogenase" +BW25113_2509 xseA 0 2627591 2628961 1 2708 0.1174325309992706 1371 161 "exonuclease VII and large subunit" +BW25113_2509__5prime xseA__5prime 0 2627393 2627590 1 836 0.06565656565656566 198 13 "exonuclease VII and large subunit" +BW25113_2509__3prime xseA__3prime 0 2628962 2629159 1 431 0.0707070707070707 198 14 "exonuclease VII and large subunit" +BW25113_2510 yfgJ 0 2628958 2629173 -1 441 0.07407407407407407 216 16 "DUF1407 family protein" +BW25113_2510__5prime yfgJ__5prime 0 2629174 2629371 -1 8 0.005050505050505051 198 1 "DUF1407 family protein" +BW25113_2510__3prime yfgJ__3prime 0 2628760 2628957 -1 454 0.17676767676767677 198 35 "DUF1407 family protein" +BW25113_2511 der 0 2629243 2630715 -1 0 0.0 1473 0 "GTPase; multicopy suppressor of ftsJ" +BW25113_2511__5prime der__5prime 0 2630716 2630913 -1 171 0.030303030303030304 198 6 "GTPase; multicopy suppressor of ftsJ" +BW25113_2511__3prime der__3prime 0 2629045 2629242 -1 413 0.06565656565656566 198 13 "GTPase; multicopy suppressor of ftsJ" +BW25113_2512 bamB 0 2630833 2632011 -1 1366 0.05258693808312129 1179 62 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2512__5prime bamB__5prime 0 2632012 2632209 -1 299 0.0707070707070707 198 14 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2512__3prime bamB__3prime 0 2630635 2630832 -1 63 0.015151515151515152 198 3 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2513 yfgM 0 2632022 2632642 -1 859 0.07246376811594203 621 45 "putative anti-RcsB factor" +BW25113_2513__5prime yfgM__5prime 0 2632643 2632840 -1 315 0.045454545454545456 198 9 "putative anti-RcsB factor" +BW25113_2513__3prime yfgM__3prime 0 2631824 2632021 -1 196 0.06565656565656566 198 13 "putative anti-RcsB factor" +BW25113_2514 hisS 0 2632660 2633934 -1 166 0.003137254901960784 1275 4 "histidyl tRNA synthetase" +BW25113_2514__5prime hisS__5prime 0 2633935 2634132 -1 35 0.010101010101010102 198 2 "histidyl tRNA synthetase" +BW25113_2514__3prime hisS__3prime 0 2632462 2632659 -1 382 0.1111111111111111 198 22 "histidyl tRNA synthetase" +BW25113_2515 ispG 0 2634045 2635163 -1 0 0.0 1119 0 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" +BW25113_2515__5prime ispG__5prime 0 2635164 2635361 -1 595 0.12626262626262627 198 25 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" +BW25113_2515__3prime ispG__3prime 0 2633847 2634044 -1 35 0.010101010101010102 198 2 "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" +BW25113_2516 rodZ 0 2635190 2636203 -1 1778 0.08974358974358974 1014 91 "MreB assembly cytoskeletal protein" +BW25113_2516__5prime rodZ__5prime 0 2636204 2636401 -1 1496 0.16666666666666666 198 33 "MreB assembly cytoskeletal protein" +BW25113_2516__3prime rodZ__3prime 0 2634992 2635189 -1 0 0.0 198 0 "MreB assembly cytoskeletal protein" +BW25113_2517 rlmN 0 2636488 2637642 -1 3344 0.11601731601731602 1155 134 "dual specificity 23S rRNA m(2)A2503 and tRNA m(2)A37 methyltransferase and SAM-dependent" +BW25113_2517__5prime rlmN__5prime 0 2637643 2637840 -1 239 0.0707070707070707 198 14 "dual specificity 23S rRNA m(2)A2503 and tRNA m(2)A37 methyltransferase and SAM-dependent" +BW25113_2517__3prime rlmN__3prime 0 2636290 2636487 -1 1338 0.16161616161616163 198 32 "dual specificity 23S rRNA m(2)A2503 and tRNA m(2)A37 methyltransferase and SAM-dependent" +BW25113_2518 ndk 0 2637792 2638223 -1 501 0.04861111111111111 432 21 '"multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3''-phosphodiesterase"' +BW25113_2518__5prime ndk__5prime 0 2638224 2638421 -1 181 0.0707070707070707 198 14 '"multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3''-phosphodiesterase"' +BW25113_2518__3prime ndk__3prime 0 2637594 2637791 -1 268 0.08080808080808081 198 16 '"multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3''-phosphodiesterase"' +BW25113_2519 pbpC 0 2638372 2640684 -1 4331 0.08733246865542585 2313 202 "penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain" +BW25113_2519__5prime pbpC__5prime 0 2640685 2640882 -1 335 0.09595959595959595 198 19 "penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain" +BW25113_2519__3prime pbpC__3prime 0 2638174 2638371 -1 134 0.05555555555555555 198 11 "penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain" +BW25113_2520 yfhM 0 2640685 2645646 -1 11364 0.08524788391777509 4962 423 "bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein" +BW25113_2520__5prime yfhM__5prime 0 2645647 2645844 -1 459 0.10101010101010101 198 20 "bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein" +BW25113_2520__3prime yfhM__3prime 0 2640487 2640684 -1 759 0.13131313131313133 198 26 "bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein" +2642035_2642178 2642035_2642178 0 2642036 2642178 1 155 0.08391608391608392 143 12 "2642035_2642178" +2642035_2642178__5prime 2642035_2642178__5prime 0 2641838 2642035 1 602 0.050505050505050504 198 10 "2642035_2642178" +2642035_2642178__3prime 2642035_2642178__3prime 0 2642179 2642376 1 270 0.08585858585858586 198 17 "2642035_2642178" +BW25113_2521 sseA 0 2645853 2646698 1 4355 0.19030732860520094 846 161 "3-mercaptopyruvate sulfurtransferase" +BW25113_2521__5prime sseA__5prime 0 2645655 2645852 1 459 0.10101010101010101 198 20 "3-mercaptopyruvate sulfurtransferase" +BW25113_2521__3prime sseA__3prime 0 2646699 2646896 1 1729 0.36363636363636365 198 72 "3-mercaptopyruvate sulfurtransferase" +BW25113_4440 ryfA 0 2647214 2647517 1 3544 0.35526315789473684 304 108 "novel sRNA and function unknown" +BW25113_4440__5prime ryfA__5prime 0 2647016 2647213 1 2539 0.3181818181818182 198 63 "novel sRNA and function unknown" +BW25113_4440__3prime ryfA__3prime 0 2647518 2647715 1 1134 0.16666666666666666 198 33 "novel sRNA and function unknown" +BW25113_2522 sseB 0 2647516 2648292 -1 3119 0.15958815958815958 777 124 "rhodanase-like enzyme and sulfur transfer from thiosulfate" +BW25113_2522__5prime sseB__5prime 0 2648293 2648490 -1 343 0.06060606060606061 198 12 "rhodanase-like enzyme and sulfur transfer from thiosulfate" +BW25113_2522__3prime sseB__3prime 0 2647318 2647515 -1 2217 0.3333333333333333 198 66 "rhodanase-like enzyme and sulfur transfer from thiosulfate" +2648328_2648425 2648328_2648425 0 2648329 2648425 1 52 0.041237113402061855 97 4 "2648328_2648425" +2648328_2648425__5prime 2648328_2648425__5prime 0 2648131 2648328 1 131 0.03535353535353535 198 7 "2648328_2648425" +2648328_2648425__3prime 2648328_2648425__3prime 0 2648426 2648623 1 552 0.12121212121212122 198 24 "2648328_2648425" +BW25113_2523 pepB 0 2648434 2649717 -1 2282 0.09345794392523364 1284 120 "aminopeptidase B" +BW25113_2523__5prime pepB__5prime 0 2649718 2649915 -1 239 0.06565656565656566 198 13 "aminopeptidase B" +BW25113_2523__3prime pepB__3prime 0 2648236 2648433 -1 87 0.03535353535353535 198 7 "aminopeptidase B" +BW25113_2524 iscX 0 2649895 2650095 -1 366 0.0945273631840796 201 19 "Iron binding protein associated with IscS; putative molecular adaptor of IscS function" +BW25113_2524__5prime iscX__5prime 0 2650096 2650293 -1 511 0.09595959595959595 198 19 "Iron binding protein associated with IscS; putative molecular adaptor of IscS function" +BW25113_2524__3prime iscX__3prime 0 2649697 2649894 -1 133 0.04040404040404041 198 8 "Iron binding protein associated with IscS; putative molecular adaptor of IscS function" +BW25113_2525 fdx 0 2650107 2650442 -1 447 0.05654761904761905 336 19 "[2Fe-2S] ferredoxin" +BW25113_2525__5prime fdx__5prime 0 2650443 2650640 -1 139 0.03535353535353535 198 7 "[2Fe-2S] ferredoxin" +BW25113_2525__3prime fdx__3prime 0 2649909 2650106 -1 470 0.10101010101010101 198 20 "[2Fe-2S] ferredoxin" +BW25113_2526 hscA 0 2650444 2652294 -1 521 0.01728795245813074 1851 32 "DnaK-like molecular chaperone specific for IscU" +BW25113_2526__5prime hscA__5prime 0 2652295 2652492 -1 39 0.015151515151515152 198 3 "DnaK-like molecular chaperone specific for IscU" +BW25113_2526__3prime hscA__3prime 0 2650246 2650443 -1 98 0.03535353535353535 198 7 "DnaK-like molecular chaperone specific for IscU" +BW25113_2527 hscB 0 2652311 2652826 -1 401 0.029069767441860465 516 15 "HscA co-chaperone and J domain-containing protein Hsc56; IscU-specific chaperone HscAB" +BW25113_2527__5prime hscB__5prime 0 2652827 2653024 -1 309 0.06565656565656566 198 13 "HscA co-chaperone and J domain-containing protein Hsc56; IscU-specific chaperone HscAB" +BW25113_2527__3prime hscB__3prime 0 2652113 2652310 -1 0 0.0 198 0 "HscA co-chaperone and J domain-containing protein Hsc56; IscU-specific chaperone HscAB" +BW25113_2528 iscA 0 2652922 2653245 -1 425 0.043209876543209874 324 14 "FeS cluster assembly protein" +BW25113_2528__5prime iscA__5prime 0 2653246 2653443 -1 140 0.05555555555555555 198 11 "FeS cluster assembly protein" +BW25113_2528__3prime iscA__3prime 0 2652724 2652921 -1 206 0.050505050505050504 198 10 "FeS cluster assembly protein" +BW25113_2529 iscU 0 2653262 2653648 -1 91 0.01808785529715762 387 7 "iron-sulfur cluster assembly scaffold protein" +BW25113_2529__5prime iscU__5prime 0 2653649 2653846 -1 46 0.020202020202020204 198 4 "iron-sulfur cluster assembly scaffold protein" +BW25113_2529__3prime iscU__3prime 0 2653064 2653261 -1 383 0.08080808080808081 198 16 "iron-sulfur cluster assembly scaffold protein" +BW25113_2530 iscS 0 2653676 2654890 -1 126 0.00823045267489712 1215 10 "cysteine desulfurase (tRNA sulfurtransferase) and PLP-dependent" +BW25113_2530__5prime iscS__5prime 0 2654891 2655088 -1 183 0.04040404040404041 198 8 "cysteine desulfurase (tRNA sulfurtransferase) and PLP-dependent" +BW25113_2530__3prime iscS__3prime 0 2653478 2653675 -1 10 0.005050505050505051 198 1 "cysteine desulfurase (tRNA sulfurtransferase) and PLP-dependent" +BW25113_2531 iscR 0 2655002 2655490 -1 572 0.03680981595092025 489 18 "isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress-and iron starvation-inducible; autorepressor" +BW25113_2531__5prime iscR__5prime 0 2655491 2655688 -1 140 0.050505050505050504 198 10 "isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress-and iron starvation-inducible; autorepressor" +BW25113_2531__3prime iscR__3prime 0 2654804 2655001 -1 123 0.030303030303030304 198 6 "isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress-and iron starvation-inducible; autorepressor" +2655667_2655933 2655667_2655933 0 2655668 2655933 1 2116 0.2744360902255639 266 73 "2655667_2655933" +2655667_2655933__5prime 2655667_2655933__5prime 0 2655470 2655667 1 205 0.06060606060606061 198 12 "2655667_2655933" +2655667_2655933__3prime 2655667_2655933__3prime 0 2655934 2656131 1 295 0.05555555555555555 198 11 "2655667_2655933" +BW25113_2532 trmJ 0 2655942 2656682 -1 1892 0.11201079622132254 741 83 '"tRNA mC32 and mU32 2''-O-methyltransferase and SAM-dependent"' +BW25113_2532__5prime trmJ__5prime 0 2656683 2656880 -1 179 0.045454545454545456 198 9 '"tRNA mC32 and mU32 2''-O-methyltransferase and SAM-dependent"' +BW25113_2532__3prime trmJ__3prime 0 2655744 2655941 -1 1486 0.26262626262626265 198 52 '"tRNA mC32 and mU32 2''-O-methyltransferase and SAM-dependent"' +BW25113_2533 suhB 0 2656801 2657604 1 128 0.017412935323383085 804 14 "inositol monophosphatase" +BW25113_2533__5prime suhB__5prime 0 2656603 2656800 1 210 0.06565656565656566 198 13 "inositol monophosphatase" +BW25113_2533__3prime suhB__3prime 0 2657605 2657802 1 543 0.06565656565656566 198 13 "inositol monophosphatase" +BW25113_2534 yfhR 0 2657749 2658603 1 2110 0.08538011695906433 855 73 "putative S9 family prolyl oligopeptidase" +BW25113_2534__5prime yfhR__5prime 0 2657551 2657748 1 317 0.08080808080808081 198 16 "putative S9 family prolyl oligopeptidase" +BW25113_2534__3prime yfhR__3prime 0 2658604 2658801 1 64 0.010101010101010102 198 2 "putative S9 family prolyl oligopeptidase" +BW25113_2535 csiE 0 2658794 2660074 1 3106 0.11397345823575332 1281 146 "stationary phase inducible protein" +BW25113_2535__5prime csiE__5prime 0 2658596 2658793 1 107 0.030303030303030304 198 6 "stationary phase inducible protein" +BW25113_2535__3prime csiE__3prime 0 2660075 2660272 1 138 0.030303030303030304 198 6 "stationary phase inducible protein" +BW25113_2536 hcaT 0 2660066 2661205 -1 2002 0.07368421052631578 1140 84 "putative 3-phenylpropionic transporter" +BW25113_2536__5prime hcaT__5prime 0 2661206 2661403 -1 316 0.06060606060606061 198 12 "putative 3-phenylpropionic transporter" +BW25113_2536__3prime hcaT__3prime 0 2659868 2660065 -1 946 0.19696969696969696 198 39 "putative 3-phenylpropionic transporter" +BW25113_2537 hcaR 0 2661365 2662255 -1 1313 0.07968574635241302 891 71 "hca operon transcriptional regulator" +BW25113_2537__5prime hcaR__5prime 0 2662256 2662453 -1 250 0.0707070707070707 198 14 "hca operon transcriptional regulator" +BW25113_2537__3prime hcaR__3prime 0 2661167 2661364 -1 316 0.06060606060606061 198 12 "hca operon transcriptional regulator" +BW25113_4706 iroK 0 2661365 2661430 -1 0 0.0 66 0 "3-hydroxypropionic acid resistance peptide" +BW25113_4706__5prime iroK__5prime 0 2661431 2661628 -1 88 0.020202020202020204 198 4 "3-hydroxypropionic acid resistance peptide" +BW25113_4706__3prime iroK__3prime 0 2661167 2661364 -1 316 0.06060606060606061 198 12 "3-hydroxypropionic acid resistance peptide" +BW25113_2538 hcaE 0 2662391 2663752 1 3093 0.09251101321585903 1362 126 "3-phenylpropionate dioxygenase and large (alpha) subunit" +BW25113_2538__5prime hcaE__5prime 0 2662193 2662390 1 309 0.09090909090909091 198 18 "3-phenylpropionate dioxygenase and large (alpha) subunit" +BW25113_2538__3prime hcaE__3prime 0 2663753 2663950 1 249 0.10101010101010101 198 20 "3-phenylpropionate dioxygenase and large (alpha) subunit" +BW25113_2539 hcaF 0 2663749 2664267 1 717 0.0789980732177264 519 41 "3-phenylpropionate dioxygenase and small (beta) subunit" +BW25113_2539__5prime hcaF__5prime 0 2663551 2663748 1 248 0.045454545454545456 198 9 "3-phenylpropionate dioxygenase and small (beta) subunit" +BW25113_2539__3prime hcaF__3prime 0 2664268 2664465 1 242 0.10606060606060606 198 21 "3-phenylpropionate dioxygenase and small (beta) subunit" +BW25113_2540 hcaC 0 2664267 2664587 1 280 0.07476635514018691 321 24 "3-phenylpropionate dioxygenase and ferredoxin subunit" +BW25113_2540__5prime hcaC__5prime 0 2664069 2664266 1 279 0.06565656565656566 198 13 "3-phenylpropionate dioxygenase and ferredoxin subunit" +BW25113_2540__3prime hcaC__3prime 0 2664588 2664785 1 172 0.07575757575757576 198 15 "3-phenylpropionate dioxygenase and ferredoxin subunit" +BW25113_2541 hcaB 0 2664584 2665396 1 810 0.06888068880688807 813 56 "2 and 3-dihydroxy-2 and 3-dihydrophenylpropionate dehydrogenase" +BW25113_2541__5prime hcaB__5prime 0 2664386 2664583 1 55 0.030303030303030304 198 6 "2 and 3-dihydroxy-2 and 3-dihydrophenylpropionate dehydrogenase" +BW25113_2541__3prime hcaB__3prime 0 2665397 2665594 1 255 0.05555555555555555 198 11 "2 and 3-dihydroxy-2 and 3-dihydrophenylpropionate dehydrogenase" +BW25113_2542 hcaD 0 2665406 2666608 1 2758 0.10640066500415628 1203 128 "phenylpropionate dioxygenase and ferredoxin reductase subunit" +BW25113_2542__5prime hcaD__5prime 0 2665208 2665405 1 182 0.05555555555555555 198 11 "phenylpropionate dioxygenase and ferredoxin reductase subunit" +BW25113_2542__3prime hcaD__3prime 0 2666609 2666806 1 737 0.10606060606060606 198 21 "phenylpropionate dioxygenase and ferredoxin reductase subunit" +BW25113_2543 yphA 0 2666705 2667127 1 873 0.10401891252955082 423 44 "DoxX family inner membrane protein" +BW25113_2543__5prime yphA__5prime 0 2666507 2666704 1 832 0.1414141414141414 198 28 "DoxX family inner membrane protein" +BW25113_2543__3prime yphA__3prime 0 2667128 2667325 1 614 0.10101010101010101 198 20 "DoxX family inner membrane protein" +2667134_2667168 2667134_2667168 0 2667135 2667168 1 37 0.058823529411764705 34 2 "2667134_2667168" +2667134_2667168__5prime 2667134_2667168__5prime 0 2666937 2667134 1 446 0.08080808080808081 198 16 "2667134_2667168" +2667134_2667168__3prime 2667134_2667168__3prime 0 2667169 2667366 1 656 0.12121212121212122 198 24 "2667134_2667168" +BW25113_2544 yphB 0 2667175 2668047 -1 1864 0.09392898052691867 873 82 "mutarotase superfamily protein and YphB family" +BW25113_2544__5prime yphB__5prime 0 2668048 2668245 -1 384 0.08080808080808081 198 16 "mutarotase superfamily protein and YphB family" +BW25113_2544__3prime yphB__3prime 0 2666977 2667174 -1 483 0.09090909090909091 198 18 "mutarotase superfamily protein and YphB family" +BW25113_2545 yphC 0 2668059 2669120 -1 1972 0.07721280602636535 1062 82 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_2545__5prime yphC__5prime 0 2669121 2669318 -1 505 0.12626262626262627 198 25 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_2545__3prime yphC__3prime 0 2667861 2668058 -1 401 0.06060606060606061 198 12 "putative Zn-dependent NAD(P)-binding oxidoreductase" +BW25113_2546 yphD 0 2669186 2670184 -1 2289 0.1031031031031031 999 103 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_2546__5prime yphD__5prime 0 2670185 2670382 -1 511 0.08080808080808081 198 16 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_2546__3prime yphD__3prime 0 2668988 2669185 -1 151 0.04040404040404041 198 8 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_2547 yphE 0 2670209 2671720 -1 1863 0.06613756613756613 1512 100 "putative sugar transporter subunit of ABC superfamily and ATP-binding component" +BW25113_2547__5prime yphE__5prime 0 2671721 2671918 -1 657 0.23232323232323232 198 46 "putative sugar transporter subunit of ABC superfamily and ATP-binding component" +BW25113_2547__3prime yphE__3prime 0 2670011 2670208 -1 376 0.08080808080808081 198 16 "putative sugar transporter subunit of ABC superfamily and ATP-binding component" +BW25113_2548 yphF 0 2671743 2672726 -1 10134 0.2611788617886179 984 257 "putative ABC superfamily sugar transporter periplasmic-binding protein" +BW25113_2548__5prime yphF__5prime 0 2672727 2672924 -1 1111 0.2474747474747475 198 49 "putative ABC superfamily sugar transporter periplasmic-binding protein" +BW25113_2548__3prime yphF__3prime 0 2671545 2671742 -1 442 0.13636363636363635 198 27 "putative ABC superfamily sugar transporter periplasmic-binding protein" +BW25113_2549 yphG 0 2672823 2676104 -1 7042 0.091102985984156 3282 299 "DUF4380 domain-containing TPR repeat protein" +BW25113_2549__5prime yphG__5prime 0 2676105 2676302 -1 124 0.030303030303030304 198 6 "DUF4380 domain-containing TPR repeat protein" +BW25113_2549__3prime yphG__3prime 0 2672625 2672822 -1 2238 0.29292929292929293 198 58 "DUF4380 domain-containing TPR repeat protein" +BW25113_2550 yphH 0 2676222 2677415 1 2369 0.09798994974874371 1194 117 "putative DNA-binding transcriptional regulator" +BW25113_2550__5prime yphH__5prime 0 2676024 2676221 1 258 0.05555555555555555 198 11 "putative DNA-binding transcriptional regulator" +BW25113_2550__3prime yphH__3prime 0 2677416 2677613 1 77 0.030303030303030304 198 6 "putative DNA-binding transcriptional regulator" +2677475_2677573 2677475_2677573 0 2677476 2677573 1 14 0.01020408163265306 98 1 "2677475_2677573" +2677475_2677573__5prime 2677475_2677573__5prime 0 2677278 2677475 1 319 0.09595959595959595 198 19 "2677475_2677573" +2677475_2677573__3prime 2677475_2677573__3prime 0 2677574 2677771 1 163 0.06060606060606061 198 12 "2677475_2677573" +BW25113_2551 glyA 0 2677613 2678866 -1 1588 0.0733652312599681 1254 92 "serine hydroxymethyltransferase" +BW25113_2551__5prime glyA__5prime 0 2678867 2679064 -1 387 0.09090909090909091 198 18 "serine hydroxymethyltransferase" +BW25113_2551__3prime glyA__3prime 0 2677415 2677612 -1 77 0.030303030303030304 198 6 "serine hydroxymethyltransferase" +BW25113_2552 hmp 0 2679194 2680384 1 2712 0.11167086481947942 1191 133 "fused nitric oxide dioxygenase/dihydropteridine reductase 2" +BW25113_2552__5prime hmp__5prime 0 2678996 2679193 1 7 0.005050505050505051 198 1 "fused nitric oxide dioxygenase/dihydropteridine reductase 2" +BW25113_2552__3prime hmp__3prime 0 2680385 2680582 1 364 0.09090909090909091 198 18 "fused nitric oxide dioxygenase/dihydropteridine reductase 2" +2680393_2680413 2680393_2680413 0 2680394 2680413 1 38 0.2 20 4 "2680393_2680413" +2680393_2680413__5prime 2680393_2680413__5prime 0 2680196 2680393 1 487 0.11616161616161616 198 23 "2680393_2680413" +2680393_2680413__3prime 2680393_2680413__3prime 0 2680414 2680611 1 326 0.0707070707070707 198 14 "2680393_2680413" +BW25113_2553 glnB 0 2680429 2680767 -1 684 0.08849557522123894 339 30 "regulatory protein P-II for glutamine synthetase" +BW25113_2553__5prime glnB__5prime 0 2680768 2680965 -1 117 0.04040404040404041 198 8 "regulatory protein P-II for glutamine synthetase" +BW25113_2553__3prime glnB__3prime 0 2680231 2680428 -1 374 0.12121212121212122 198 24 "regulatory protein P-II for glutamine synthetase" +BW25113_2554 glrR 0 2680828 2682162 -1 2602 0.09662921348314607 1335 129 "response regulator regulating glmY sRNA in two-component system with sensor protein GlrK" +BW25113_2554__5prime glrR__5prime 0 2682163 2682360 -1 384 0.12626262626262627 198 25 "response regulator regulating glmY sRNA in two-component system with sensor protein GlrK" +BW25113_2554__3prime glrR__3prime 0 2680630 2680827 -1 302 0.0707070707070707 198 14 "response regulator regulating glmY sRNA in two-component system with sensor protein GlrK" +BW25113_2555 yfhG 0 2682152 2682865 -1 1292 0.0896358543417367 714 64 "putative outer membrane protein modulating the QseEF response" +BW25113_2555__5prime yfhG__5prime 0 2682866 2683063 -1 889 0.2474747474747475 198 49 "putative outer membrane protein modulating the QseEF response" +BW25113_2555__3prime yfhG__3prime 0 2681954 2682151 -1 558 0.1111111111111111 198 22 "putative outer membrane protein modulating the QseEF response" +BW25113_2556 glrK 0 2683030 2684457 -1 3933 0.12815126050420167 1428 183 "sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR" +BW25113_2556__5prime glrK__5prime 0 2684458 2684655 -1 384 0.10101010101010101 198 20 "sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR" +BW25113_2556__3prime glrK__3prime 0 2682832 2683029 -1 732 0.2222222222222222 198 44 "sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR" +BW25113_4441 glmY 0 2684516 2684699 -1 259 0.08695652173913043 184 16 "sRNA activator of glmS mRNA and glmZ processing antagonist" +BW25113_4441__5prime glmY__5prime 0 2684700 2684897 -1 0 0.0 198 0 "sRNA activator of glmS mRNA and glmZ processing antagonist" +BW25113_4441__3prime glmY__3prime 0 2684318 2684515 -1 238 0.06060606060606061 198 12 "sRNA activator of glmS mRNA and glmZ processing antagonist" +BW25113_2557 purL 0 2685015 2688902 -1 9221 0.10339506172839506 3888 402 "phosphoribosylformyl-glycineamide synthetase" +BW25113_2557__5prime purL__5prime 0 2688903 2689100 -1 11 0.005050505050505051 198 1 "phosphoribosylformyl-glycineamide synthetase" +BW25113_2557__3prime purL__3prime 0 2684817 2685014 -1 8 0.005050505050505051 198 1 "phosphoribosylformyl-glycineamide synthetase" +BW25113_2558 mltF 0 2689160 2690716 1 3565 0.11881824020552344 1557 185 "membrane-bound lytic transglycosylase F and murein hydrolase" +BW25113_2558__5prime mltF__5prime 0 2688962 2689159 1 11 0.005050505050505051 198 1 "membrane-bound lytic transglycosylase F and murein hydrolase" +BW25113_2558__3prime mltF__3prime 0 2690717 2690914 1 0 0.0 198 0 "membrane-bound lytic transglycosylase F and murein hydrolase" +BW25113_2558 mltF 0 2690179 2690480 1 938 0.17218543046357615 302 52 "2690178_2690480" +BW25113_2558__5prime mltF__5prime 0 2689981 2690178 1 678 0.13636363636363635 198 27 "2690178_2690480" +BW25113_2558__3prime mltF__3prime 0 2690481 2690678 1 262 0.045454545454545456 198 9 "2690178_2690480" +BW25113_2559 tadA 0 2690713 2691216 -1 54 0.005952380952380952 504 3 "tRNA-specific adenosine deaminase" +BW25113_2559__5prime tadA__5prime 0 2691217 2691414 -1 587 0.12626262626262627 198 25 "tRNA-specific adenosine deaminase" +BW25113_2559__3prime tadA__3prime 0 2690515 2690712 -1 283 0.04040404040404041 198 8 "tRNA-specific adenosine deaminase" +BW25113_2560 pgpC 0 2691274 2691909 -1 2075 0.11320754716981132 636 72 "phosphatidylglycerophosphatase C and membrane bound" +BW25113_2560__5prime pgpC__5prime 0 2691910 2692107 -1 849 0.16666666666666666 198 33 "phosphatidylglycerophosphatase C and membrane bound" +BW25113_2560__3prime pgpC__3prime 0 2691076 2691273 -1 234 0.07575757575757576 198 15 "phosphatidylglycerophosphatase C and membrane bound" +BW25113_2561 yfhH 0 2692118 2692966 1 3174 0.14487632508833923 849 123 "putative DNA-binding transcriptional regulator" +BW25113_2561__5prime yfhH__5prime 0 2691920 2692117 1 619 0.13636363636363635 198 27 "putative DNA-binding transcriptional regulator" +BW25113_2561__3prime yfhH__3prime 0 2692967 2693164 1 1393 0.29292929292929293 198 58 "putative DNA-binding transcriptional regulator" +BW25113_2561 yfhH 0 2692312 2692861 1 2043 0.13818181818181818 550 76 "2692311_2692861" +BW25113_2561__5prime yfhH__5prime 0 2692114 2692311 1 705 0.1111111111111111 198 22 "2692311_2692861" +BW25113_2561__3prime yfhH__3prime 0 2692862 2693059 1 530 0.17676767676767677 198 35 "2692311_2692861" +BW25113_2562 yfhL 0 2693022 2693282 1 3620 0.3716475095785441 261 97 "putative 4Fe-4S cluster-containing protein" +BW25113_2562__5prime yfhL__5prime 0 2692824 2693021 1 727 0.21212121212121213 198 42 "putative 4Fe-4S cluster-containing protein" +BW25113_2562__3prime yfhL__3prime 0 2693283 2693480 1 944 0.1414141414141414 198 28 "putative 4Fe-4S cluster-containing protein" +BW25113_4687 shoB 0 2693476 2693556 -1 635 0.3333333333333333 81 27 "toxic membrane protein" +BW25113_4687__5prime shoB__5prime 0 2693557 2693754 -1 4735 0.40404040404040403 198 80 "toxic membrane protein" +BW25113_4687__3prime shoB__3prime 0 2693278 2693475 -1 944 0.1414141414141414 198 28 "toxic membrane protein" +BW25113_4608 ohsC 0 2693879 2693955 1 152 0.12987012987012986 77 10 "sRNA antisense regulator of shoB toxin" +BW25113_4608__5prime ohsC__5prime 0 2693681 2693878 1 1888 0.22727272727272727 198 45 "sRNA antisense regulator of shoB toxin" +BW25113_4608__3prime ohsC__3prime 0 2693956 2694153 1 0 0.0 198 0 "sRNA antisense regulator of shoB toxin" +BW25113_2563 acpS 0 2693977 2694357 -1 29 0.0026246719160104987 381 1 "holo-[acyl-carrier-protein] synthase 1" +BW25113_2563__5prime acpS__5prime 0 2694358 2694555 -1 59 0.025252525252525252 198 5 "holo-[acyl-carrier-protein] synthase 1" +BW25113_2563__3prime acpS__3prime 0 2693779 2693976 -1 391 0.13636363636363635 198 27 "holo-[acyl-carrier-protein] synthase 1" +BW25113_2564 pdxJ 0 2694357 2695088 -1 694 0.03278688524590164 732 24 '"pyridoxine 5''-phosphate synthase"' +BW25113_2564__5prime pdxJ__5prime 0 2695089 2695286 -1 494 0.05555555555555555 198 11 '"pyridoxine 5''-phosphate synthase"' +BW25113_2564__3prime pdxJ__3prime 0 2694159 2694356 -1 29 0.005050505050505051 198 1 '"pyridoxine 5''-phosphate synthase"' +BW25113_2565 recO 0 2695100 2695828 -1 1718 0.09190672153635117 729 67 "gap repair protein" +BW25113_2565__5prime recO__5prime 0 2695829 2696026 -1 16 0.005050505050505051 198 1 "gap repair protein" +BW25113_2565__3prime recO__3prime 0 2694902 2695099 -1 262 0.045454545454545456 198 9 "gap repair protein" +BW25113_2566 era 0 2695840 2696745 -1 22 0.002207505518763797 906 2 "membrane-associated and 16S rRNA-binding GTPase" +BW25113_2566__5prime era__5prime 0 2696746 2696943 -1 99 0.03535353535353535 198 7 "membrane-associated and 16S rRNA-binding GTPase" +BW25113_2566__3prime era__3prime 0 2695642 2695839 -1 370 0.10606060606060606 198 21 "membrane-associated and 16S rRNA-binding GTPase" +BW25113_2567 rnc 0 2696742 2697422 -1 623 0.03524229074889868 681 24 "RNase III" +BW25113_2567__5prime rnc__5prime 0 2697423 2697620 -1 350 0.07575757575757576 198 15 "RNase III" +BW25113_2567__3prime rnc__3prime 0 2696544 2696741 -1 6 0.005050505050505051 198 1 "RNase III" +BW25113_2568 lepB 0 2697694 2698668 -1 89 0.006153846153846154 975 6 "leader peptidase (signal peptidase I)" +BW25113_2568__5prime lepB__5prime 0 2698669 2698866 -1 293 0.09090909090909091 198 18 "leader peptidase (signal peptidase I)" +BW25113_2568__3prime lepB__3prime 0 2697496 2697693 -1 289 0.045454545454545456 198 9 "leader peptidase (signal peptidase I)" +BW25113_2569 lepA 0 2698684 2700483 -1 1797 0.057777777777777775 1800 104 "back-translocating elongation factor EF4 and GTPase" +BW25113_2569__5prime lepA__5prime 0 2700484 2700681 -1 356 0.10606060606060606 198 21 "back-translocating elongation factor EF4 and GTPase" +BW25113_2569__3prime lepA__3prime 0 2698486 2698683 -1 41 0.005050505050505051 198 1 "back-translocating elongation factor EF4 and GTPase" +BW25113_2570 rseC 0 2700681 2701160 -1 1626 0.1375 480 66 "SoxR iron-sulfur cluster reduction factor component; with RsxABCDEG" +BW25113_2570__5prime rseC__5prime 0 2701161 2701358 -1 303 0.0707070707070707 198 14 "SoxR iron-sulfur cluster reduction factor component; with RsxABCDEG" +BW25113_2570__3prime rseC__3prime 0 2700483 2700680 -1 356 0.10606060606060606 198 21 "SoxR iron-sulfur cluster reduction factor component; with RsxABCDEG" +BW25113_2571 rseB 0 2701157 2702113 -1 1348 0.08150470219435736 957 78 "anti-sigma E factor and binds RseA" +BW25113_2571__5prime rseB__5prime 0 2702114 2702311 -1 410 0.15151515151515152 198 30 "anti-sigma E factor and binds RseA" +BW25113_2571__3prime rseB__3prime 0 2700959 2701156 -1 427 0.10606060606060606 198 21 "anti-sigma E factor and binds RseA" +BW25113_2572 rseA 0 2702113 2702763 -1 1034 0.08448540706605223 651 55 "anti-sigma factor" +BW25113_2572__5prime rseA__5prime 0 2702764 2702961 -1 114 0.025252525252525252 198 5 "anti-sigma factor" +BW25113_2572__3prime rseA__3prime 0 2701915 2702112 -1 235 0.09090909090909091 198 18 "anti-sigma factor" +BW25113_2573 rpoE 0 2702796 2703371 -1 7 0.001736111111111111 576 1 "RNA polymerase sigma E factor" +BW25113_2573__5prime rpoE__5prime 0 2703372 2703569 -1 263 0.06565656565656566 198 13 "RNA polymerase sigma E factor" +BW25113_2573__3prime rpoE__3prime 0 2702598 2702795 -1 424 0.09595959595959595 198 19 "RNA polymerase sigma E factor" +BW25113_2574 nadB 0 2703779 2705401 1 3834 0.11090573012939002 1623 180 "quinolinate synthase and L-aspartate oxidase (B protein) subunit" +BW25113_2574__5prime nadB__5prime 0 2703581 2703778 1 147 0.06060606060606061 198 12 "quinolinate synthase and L-aspartate oxidase (B protein) subunit" +BW25113_2574__3prime nadB__3prime 0 2705402 2705599 1 568 0.10606060606060606 198 21 "quinolinate synthase and L-aspartate oxidase (B protein) subunit" +BW25113_2575 trmN 0 2705386 2706123 -1 2025 0.0948509485094851 738 70 "tRNA1(Val) (adenine(37)-N6)-methyltransferase" +BW25113_2575__5prime trmN__5prime 0 2706124 2706321 -1 457 0.09090909090909091 198 18 "tRNA1(Val) (adenine(37)-N6)-methyltransferase" +BW25113_2575__3prime trmN__3prime 0 2705188 2705385 -1 602 0.10606060606060606 198 21 "tRNA1(Val) (adenine(37)-N6)-methyltransferase" +BW25113_2576 srmB 0 2706255 2707589 1 2132 0.07715355805243446 1335 103 "ATP-dependent RNA helicase" +BW25113_2576__5prime srmB__5prime 0 2706057 2706254 1 714 0.1111111111111111 198 22 "ATP-dependent RNA helicase" +BW25113_2576__3prime srmB__3prime 0 2707590 2707787 1 229 0.09090909090909091 198 18 "ATP-dependent RNA helicase" +2707641_2707739 2707641_2707739 0 2707642 2707739 1 110 0.09183673469387756 98 9 "2707641_2707739" +2707641_2707739__5prime 2707641_2707739__5prime 0 2707444 2707641 1 533 0.13131313131313133 198 26 "2707641_2707739" +2707641_2707739__3prime 2707641_2707739__3prime 0 2707740 2707937 1 520 0.13131313131313133 198 26 "2707641_2707739" +BW25113_2577 yfiE 0 2707798 2708679 -1 1502 0.08163265306122448 882 72 "putative DNA-binding transcriptional regulator" +BW25113_2577__5prime yfiE__5prime 0 2708680 2708877 -1 256 0.10101010101010101 198 20 "putative DNA-binding transcriptional regulator" +BW25113_2577__3prime yfiE__3prime 0 2707600 2707797 -1 229 0.09090909090909091 198 18 "putative DNA-binding transcriptional regulator" +BW25113_2578 eamB 0 2708782 2709369 1 1293 0.10374149659863946 588 61 "cysteine and O-acetylserine exporter" +BW25113_2578__5prime eamB__5prime 0 2708584 2708781 1 114 0.025252525252525252 198 5 "cysteine and O-acetylserine exporter" +BW25113_2578__3prime eamB__3prime 0 2709370 2709567 1 204 0.08585858585858586 198 17 "cysteine and O-acetylserine exporter" +BW25113_2579 grcA 0 2709425 2709808 -1 226 0.041666666666666664 384 16 "autonomous glycyl radical cofactor" +BW25113_2579__5prime grcA__5prime 0 2709809 2710006 -1 60 0.025252525252525252 198 5 "autonomous glycyl radical cofactor" +BW25113_2579__3prime grcA__3prime 0 2709227 2709424 -1 326 0.09090909090909091 198 18 "autonomous glycyl radical cofactor" +BW25113_2580 ung 0 2710113 2710802 1 1137 0.06521739130434782 690 45 "uracil-DNA-glycosylase" +BW25113_2580__5prime ung__5prime 0 2709915 2710112 1 101 0.045454545454545456 198 9 "uracil-DNA-glycosylase" +BW25113_2580__3prime ung__3prime 0 2710803 2711000 1 71 0.03535353535353535 198 7 "uracil-DNA-glycosylase" +2710816_2710842 2710816_2710842 0 2710817 2710842 1 0 0.0 26 0 "2710816_2710842" +2710816_2710842__5prime 2710816_2710842__5prime 0 2710619 2710816 1 136 0.025252525252525252 198 5 "2710816_2710842" +2710816_2710842__3prime 2710816_2710842__3prime 0 2710843 2711040 1 71 0.03535353535353535 198 7 "2710816_2710842" +BW25113_2581 yfiF 0 2710850 2711887 -1 2144 0.07032755298651253 1038 73 "putative methyltransferase" +BW25113_2581__5prime yfiF__5prime 0 2711888 2712085 -1 121 0.025252525252525252 198 5 "putative methyltransferase" +BW25113_2581__3prime yfiF__3prime 0 2710652 2710849 -1 105 0.020202020202020204 198 4 "putative methyltransferase" +BW25113_2582 trxC 0 2712094 2712513 1 717 0.0880952380952381 420 37 "thioredoxin 2" +BW25113_2582__5prime trxC__5prime 0 2711896 2712093 1 62 0.020202020202020204 198 4 "thioredoxin 2" +BW25113_2582__3prime trxC__3prime 0 2712514 2712711 1 83 0.04040404040404041 198 8 "thioredoxin 2" +BW25113_2583 yfiP 0 2712582 2713280 1 984 0.07725321888412018 699 54 "DTW domain protein" +BW25113_2583__5prime yfiP__5prime 0 2712384 2712581 1 72 0.030303030303030304 198 6 "DTW domain protein" +BW25113_2583__3prime yfiP__3prime 0 2713281 2713478 1 373 0.09595959595959595 198 19 "DTW domain protein" +BW25113_2584 pka 0 2713312 2715972 1 3361 0.0623825629462608 2661 166 "protein lysine acetyltransferase" +BW25113_2584__5prime pka__5prime 0 2713114 2713311 1 512 0.1111111111111111 198 22 "protein lysine acetyltransferase" +BW25113_2584__3prime pka__3prime 0 2715973 2716170 1 261 0.06060606060606061 198 12 "protein lysine acetyltransferase" +BW25113_2585 pssA 0 2716086 2717441 1 0 0.0 1356 0 "phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)" +BW25113_2585__5prime pssA__5prime 0 2715888 2716085 1 348 0.08585858585858586 198 17 "phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)" +BW25113_2585__3prime pssA__3prime 0 2717442 2717639 1 125 0.030303030303030304 198 6 "phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)" +BW25113_2586 yfiM 0 2717487 2717810 1 576 0.08024691358024691 324 26 "putative lipoprotein" +BW25113_2586__5prime yfiM__5prime 0 2717289 2717486 1 0 0.0 198 0 "putative lipoprotein" +BW25113_2586__3prime yfiM__3prime 0 2717811 2718008 1 390 0.1111111111111111 198 22 "putative lipoprotein" +BW25113_2587 kgtP 0 2717807 2719105 -1 1485 0.057736720554272515 1299 75 "alpha-ketoglutarate transporter" +BW25113_2587__5prime kgtP__5prime 0 2719106 2719303 -1 37 0.020202020202020204 198 4 "alpha-ketoglutarate transporter" +BW25113_2587__3prime kgtP__3prime 0 2717609 2717806 -1 462 0.10606060606060606 198 21 "alpha-ketoglutarate transporter" +BW25113_2588 rrfG 0 2719428 2719547 -1 50 0.041666666666666664 120 5 "5S ribosomal RNA of rrnG operon" +BW25113_2588__5prime rrfG__5prime 0 2719548 2719745 -1 134 0.06060606060606061 198 12 "5S ribosomal RNA of rrnG operon" +BW25113_2588__3prime rrfG__3prime 0 2719230 2719427 -1 32 0.025252525252525252 198 5 "5S ribosomal RNA of rrnG operon" +BW25113_2589 rrlG 0 2719640 2722543 -1 2661 0.07059228650137742 2904 205 "23S ribosomal RNA of rrnG operon" +BW25113_2589__5prime rrlG__5prime 0 2722544 2722741 -1 91 0.025252525252525252 198 5 "23S ribosomal RNA of rrnG operon" +BW25113_2589__3prime rrlG__3prime 0 2719442 2719639 -1 109 0.050505050505050504 198 10 "23S ribosomal RNA of rrnG operon" +BW25113_2590 gltW 0 2722728 2722803 -1 102 0.09210526315789473 76 7 "tRNA-Glu" +BW25113_2590__5prime gltW__5prime 0 2722804 2723001 -1 154 0.050505050505050504 198 10 "tRNA-Glu" +BW25113_2590__3prime gltW__3prime 0 2722530 2722727 -1 87 0.025252525252525252 198 5 "tRNA-Glu" +BW25113_2591 rrsG 0 2722975 2724516 -1 1655 0.06809338521400778 1542 105 "16S ribosomal RNA of rrnG operon" +BW25113_2591__5prime rrsG__5prime 0 2724517 2724714 -1 116 0.0707070707070707 198 14 "16S ribosomal RNA of rrnG operon" +BW25113_2591__3prime rrsG__3prime 0 2722777 2722974 -1 194 0.06060606060606061 198 12 "16S ribosomal RNA of rrnG operon" +BW25113_2592 clpB 0 2724959 2727532 -1 6710 0.10606060606060606 2574 273 "protein disaggregation chaperone" +BW25113_2592__5prime clpB__5prime 0 2727533 2727730 -1 245 0.06060606060606061 198 12 "protein disaggregation chaperone" +BW25113_2592__3prime clpB__3prime 0 2724761 2724958 -1 90 0.05555555555555555 198 11 "protein disaggregation chaperone" +BW25113_4609 ryfD 0 2727512 2727654 -1 248 0.09090909090909091 143 13 "novel sRNA and function unknown" +BW25113_4609__5prime ryfD__5prime 0 2727655 2727852 -1 70 0.03535353535353535 198 7 "novel sRNA and function unknown" +BW25113_4609__3prime ryfD__3prime 0 2727314 2727511 -1 665 0.13636363636363635 198 27 "novel sRNA and function unknown" +BW25113_2593 yfiH 0 2727662 2728393 -1 2101 0.10382513661202186 732 76 "UPF0124 family protein" +BW25113_2593__5prime yfiH__5prime 0 2728394 2728591 -1 124 0.015151515151515152 198 3 "UPF0124 family protein" +BW25113_2593__3prime yfiH__3prime 0 2727464 2727661 -1 375 0.09595959595959595 198 19 "UPF0124 family protein" +BW25113_2594 rluD 0 2728390 2729370 -1 292 0.011213047910295617 981 11 "23S rRNA pseudouridine(1911 and 1915 and 1917) synthase" +BW25113_2594__5prime rluD__5prime 0 2729371 2729568 -1 547 0.12626262626262627 198 25 "23S rRNA pseudouridine(1911 and 1915 and 1917) synthase" +BW25113_2594__3prime rluD__3prime 0 2728192 2728389 -1 611 0.1414141414141414 198 28 "23S rRNA pseudouridine(1911 and 1915 and 1917) synthase" +BW25113_2595 bamD 0 2729505 2730242 1 7 0.0013550135501355014 738 1 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2595__5prime bamD__5prime 0 2729307 2729504 1 635 0.15151515151515152 198 30 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2595__3prime bamD__3prime 0 2730243 2730440 1 62 0.030303030303030304 198 6 "BamABCDE complex OM biogenesis lipoprotein" +BW25113_2597 raiA 0 2730513 2730854 1 343 0.07894736842105263 342 27 "cold shock protein associated with 30S ribosomal subunit" +BW25113_2597__5prime raiA__5prime 0 2730315 2730512 1 48 0.025252525252525252 198 5 "cold shock protein associated with 30S ribosomal subunit" +BW25113_2597__3prime raiA__3prime 0 2730855 2731052 1 503 0.15151515151515152 198 30 "cold shock protein associated with 30S ribosomal subunit" +BW25113_2598 pheL 0 2730958 2731005 1 166 0.16666666666666666 48 8 "pheA gene leader peptide" +BW25113_2598__5prime pheL__5prime 0 2730760 2730957 1 298 0.12121212121212122 198 24 "pheA gene leader peptide" +BW25113_2598__3prime pheL__3prime 0 2731006 2731203 1 318 0.10101010101010101 198 20 "pheA gene leader peptide" +BW25113_2599 pheA 0 2731104 2732264 1 2538 0.09388458225667529 1161 109 "chorismate mutase and prephenate dehydratase and P-protein" +BW25113_2599__5prime pheA__5prime 0 2730906 2731103 1 523 0.16666666666666666 198 33 "chorismate mutase and prephenate dehydratase and P-protein" +BW25113_2599__3prime pheA__3prime 0 2732265 2732462 1 173 0.05555555555555555 198 11 "chorismate mutase and prephenate dehydratase and P-protein" +2732273_2732297 2732273_2732297 0 2732274 2732297 1 0 0.0 24 0 "2732273_2732297" +2732273_2732297__5prime 2732273_2732297__5prime 0 2732076 2732273 1 444 0.08080808080808081 198 16 "2732273_2732297" +2732273_2732297__3prime 2732273_2732297__3prime 0 2732298 2732495 1 183 0.06060606060606061 198 12 "2732273_2732297" +BW25113_2600 tyrA 0 2732307 2733428 -1 1702 0.07932263814616755 1122 89 "fused chorismate mutase T/prephenate dehydrogenase" +BW25113_2600__5prime tyrA__5prime 0 2733429 2733626 -1 274 0.0707070707070707 198 14 "fused chorismate mutase T/prephenate dehydrogenase" +BW25113_2600__3prime tyrA__3prime 0 2732109 2732306 -1 390 0.07575757575757576 198 15 "fused chorismate mutase T/prephenate dehydrogenase" +BW25113_2601 aroF 0 2733439 2734509 -1 1928 0.10830999066293184 1071 116 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and tyrosine-repressible" +BW25113_2601__5prime aroF__5prime 0 2734510 2734707 -1 85 0.020202020202020204 198 4 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and tyrosine-repressible" +BW25113_2601__3prime aroF__3prime 0 2733241 2733438 -1 171 0.06060606060606061 198 12 "3-deoxy-D-arabino-heptulosonate-7-phosphate synthase and tyrosine-repressible" +BW25113_2602 yfiL 0 2734719 2735084 1 2017 0.19398907103825136 366 71 "lipoprotein" +BW25113_2602__5prime yfiL__5prime 0 2734521 2734718 1 85 0.020202020202020204 198 4 "lipoprotein" +BW25113_2602__3prime yfiL__3prime 0 2735085 2735282 1 233 0.09090909090909091 198 18 "lipoprotein" +BW25113_2603 yfiR 0 2735234 2735752 1 5218 0.27167630057803466 519 141 "putative periplasmic inhibitor of YfiN activity" +BW25113_2603__5prime yfiR__5prime 0 2735036 2735233 1 110 0.010101010101010102 198 2 "putative periplasmic inhibitor of YfiN activity" +BW25113_2603__3prime yfiR__3prime 0 2735753 2735950 1 1051 0.23232323232323232 198 46 "putative periplasmic inhibitor of YfiN activity" +BW25113_2604 yfiN 0 2735742 2736968 1 2577 0.10513447432762836 1227 129 "putative membrane-anchored diguanylate cyclase with an N-terminal periplasmic domain" +BW25113_2604__5prime yfiN__5prime 0 2735544 2735741 1 2764 0.2777777777777778 198 55 "putative membrane-anchored diguanylate cyclase with an N-terminal periplasmic domain" +BW25113_2604__3prime yfiN__3prime 0 2736969 2737166 1 384 0.10606060606060606 198 21 "putative membrane-anchored diguanylate cyclase with an N-terminal periplasmic domain" +BW25113_2604 yfiN 0 2735874 2736184 1 847 0.12540192926045016 311 39 "2735873_2736184" +BW25113_2604__5prime yfiN__5prime 0 2735676 2735873 1 2986 0.3434343434343434 198 68 "2735873_2736184" +BW25113_2604__3prime yfiN__3prime 0 2736185 2736382 1 441 0.08080808080808081 198 16 "2735873_2736184" +BW25113_2605 yfiB 0 2736984 2737466 1 1196 0.13664596273291926 483 66 "OM lipoprotein putative positive effector of YfiN activity" +BW25113_2605__5prime yfiB__5prime 0 2736786 2736983 1 93 0.045454545454545456 198 9 "OM lipoprotein putative positive effector of YfiN activity" +BW25113_2605__3prime yfiB__3prime 0 2737467 2737664 1 0 0.0 198 0 "OM lipoprotein putative positive effector of YfiN activity" +BW25113_2606 rplS 0 2737542 2737889 -1 0 0.0 348 0 "50S ribosomal subunit protein L19" +BW25113_2606__5prime rplS__5prime 0 2737890 2738087 -1 57 0.020202020202020204 198 4 "50S ribosomal subunit protein L19" +BW25113_2606__3prime rplS__3prime 0 2737344 2737541 -1 272 0.09090909090909091 198 18 "50S ribosomal subunit protein L19" +BW25113_2607 trmD 0 2737931 2738698 -1 71 0.0026041666666666665 768 2 "tRNA m(1)G37 methyltransferase and SAM-dependent" +BW25113_2607__5prime trmD__5prime 0 2738699 2738896 -1 0 0.0 198 0 "tRNA m(1)G37 methyltransferase and SAM-dependent" +BW25113_2607__3prime trmD__3prime 0 2737733 2737930 -1 25 0.015151515151515152 198 3 "tRNA m(1)G37 methyltransferase and SAM-dependent" +BW25113_2608 rimM 0 2738729 2739277 -1 0 0.0 549 0 "16S rRNA processing protein" +BW25113_2608__5prime rimM__5prime 0 2739278 2739475 -1 6 0.005050505050505051 198 1 "16S rRNA processing protein" +BW25113_2608__3prime rimM__3prime 0 2738531 2738728 -1 0 0.0 198 0 "16S rRNA processing protein" +BW25113_2609 rpsP 0 2739296 2739544 -1 6 0.004016064257028112 249 1 "30S ribosomal subunit protein S16" +BW25113_2609__5prime rpsP__5prime 0 2739545 2739742 -1 34 0.015151515151515152 198 3 "30S ribosomal subunit protein S16" +BW25113_2609__3prime rpsP__3prime 0 2739098 2739295 -1 0 0.0 198 0 "30S ribosomal subunit protein S16" +BW25113_2610 ffh 0 2739793 2741154 -1 217 0.002936857562408223 1362 4 "Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)" +BW25113_2610__5prime ffh__5prime 0 2741155 2741352 -1 636 0.1414141414141414 198 28 "Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)" +BW25113_2610__3prime ffh__3prime 0 2739595 2739792 -1 68 0.030303030303030304 198 6 "Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)" +BW25113_2611 ypjD 0 2741321 2742112 1 2458 0.125 792 99 "cytochrome c assembly protein family inner membrane protein" +BW25113_2611__5prime ypjD__5prime 0 2741123 2741320 1 565 0.12121212121212122 198 24 "cytochrome c assembly protein family inner membrane protein" +BW25113_2611__3prime ypjD__3prime 0 2742113 2742310 1 634 0.1414141414141414 198 28 "cytochrome c assembly protein family inner membrane protein" +BW25113_4461 yfjD 0 2742133 2743419 1 2891 0.11965811965811966 1287 154 "UPF0053 family inner membrane protein" +BW25113_4461__5prime yfjD__5prime 0 2741935 2742132 1 911 0.18181818181818182 198 36 "UPF0053 family inner membrane protein" +BW25113_4461__3prime yfjD__3prime 0 2743420 2743617 1 84 0.020202020202020204 198 4 "UPF0053 family inner membrane protein" +BW25113_2614 grpE 0 2743474 2744067 -1 130 0.008417508417508417 594 5 "heat shock protein" +BW25113_2614__5prime grpE__5prime 0 2744068 2744265 -1 167 0.03535353535353535 198 7 "heat shock protein" +BW25113_2614__3prime grpE__3prime 0 2743276 2743473 -1 513 0.15151515151515152 198 30 "heat shock protein" +BW25113_2615 nadK 0 2744190 2745068 1 0 0.0 879 0 "NAD kinase" +BW25113_2615__5prime nadK__5prime 0 2743992 2744189 1 243 0.050505050505050504 198 10 "NAD kinase" +BW25113_2615__3prime nadK__3prime 0 2745069 2745266 1 77 0.045454545454545456 198 9 "NAD kinase" +BW25113_2616 recN 0 2745154 2746815 1 2633 0.09386281588447654 1662 156 "recombination and repair protein" +BW25113_2616__5prime recN__5prime 0 2744956 2745153 1 42 0.020202020202020204 198 4 "recombination and repair protein" +BW25113_2616__3prime recN__3prime 0 2746816 2747013 1 526 0.16161616161616163 198 32 "recombination and repair protein" +BW25113_2617 bamE 0 2746964 2747305 1 1187 0.1608187134502924 342 55 "lipoprotein component of BamABCDE OM biogenesis complex" +BW25113_2617__5prime bamE__5prime 0 2746766 2746963 1 357 0.10606060606060606 198 21 "lipoprotein component of BamABCDE OM biogenesis complex" +BW25113_2617__3prime bamE__3prime 0 2747306 2747503 1 251 0.045454545454545456 198 9 "lipoprotein component of BamABCDE OM biogenesis complex" +BW25113_2618 ratB 0 2747367 2747657 -1 358 0.06529209621993128 291 19 "UPF0125 family protein" +BW25113_2618__5prime ratB__5prime 0 2747658 2747855 -1 95 0.020202020202020204 198 4 "UPF0125 family protein" +BW25113_2618__3prime ratB__3prime 0 2747169 2747366 -1 473 0.09595959595959595 198 19 "UPF0125 family protein" +BW25113_2619 ratA 0 2747647 2748123 -1 147 0.016771488469601678 477 8 "toxic UPF0083 family protein inhibitor of 70S ribosome formation" +BW25113_2619__5prime ratA__5prime 0 2748124 2748321 -1 239 0.0707070707070707 198 14 "toxic UPF0083 family protein inhibitor of 70S ribosome formation" +BW25113_2619__3prime ratA__3prime 0 2747449 2747646 -1 224 0.0707070707070707 198 14 "toxic UPF0083 family protein inhibitor of 70S ribosome formation" +BW25113_2620 smpB 0 2748255 2748737 1 426 0.08074534161490683 483 39 "trans-translation protein" +BW25113_2620__5prime smpB__5prime 0 2748057 2748254 1 253 0.08080808080808081 198 16 "trans-translation protein" +BW25113_2620__3prime smpB__3prime 0 2748738 2748935 1 105 0.03535353535353535 198 7 "trans-translation protein" +BW25113_2621 ssrA 0 2748952 2749314 1 182 0.04132231404958678 363 15 "tmRNA and 10Sa RNA" +BW25113_2621__5prime ssrA__5prime 0 2748754 2748951 1 105 0.03535353535353535 198 7 "tmRNA and 10Sa RNA" +BW25113_2621__3prime ssrA__3prime 0 2749315 2749512 1 244 0.07575757575757576 198 15 "tmRNA and 10Sa RNA" +2749315_2771345 2749315_2771345 0 2749316 2771345 1 102276 0.15356332274171583 22030 3383 "2749315_2771345" +2749315_2771345__5prime 2749315_2771345__5prime 0 2749118 2749315 1 84 0.030303030303030304 198 6 "2749315_2771345" +2749315_2771345__3prime 2749315_2771345__3prime 0 2771346 2771543 1 453 0.06060606060606061 198 12 "2749315_2771345" +BW25113_2622 intA 0 2749518 2750759 1 5336 0.177938808373591 1242 221 "CP4-57 prophage; integrase" +BW25113_2622__5prime intA__5prime 0 2749320 2749517 1 244 0.07575757575757576 198 15 "CP4-57 prophage; integrase" +BW25113_2622__3prime intA__3prime 0 2750760 2750957 1 5852 0.4444444444444444 198 88 "CP4-57 prophage; integrase" +BW25113_2623 yfjH 0 2751003 2751959 -1 8064 0.20376175548589343 957 195 "CP4-57 prophage; uncharacterized protein" +BW25113_2623__5prime yfjH__5prime 0 2751960 2752157 -1 2148 0.31313131313131315 198 62 "CP4-57 prophage; uncharacterized protein" +BW25113_2623__3prime yfjH__3prime 0 2750805 2751002 -1 5662 0.398989898989899 198 79 "CP4-57 prophage; uncharacterized protein" +BW25113_2624 alpA 0 2752003 2752215 1 3846 0.38028169014084506 213 81 "CP4-57 prophage; DNA-binding transcriptional activator" +BW25113_2624__5prime alpA__5prime 0 2751805 2752002 1 512 0.0707070707070707 198 14 "CP4-57 prophage; DNA-binding transcriptional activator" +BW25113_2624__3prime alpA__3prime 0 2752216 2752413 1 816 0.22727272727272727 198 45 "CP4-57 prophage; DNA-binding transcriptional activator" +BW25113_2625 yfjI 0 2752344 2753753 1 11397 0.23120567375886525 1410 326 "CP4-57 prophage; uncharacterized protein" +BW25113_2625__5prime yfjI__5prime 0 2752146 2752343 1 2182 0.2727272727272727 198 54 "CP4-57 prophage; uncharacterized protein" +BW25113_2625__3prime yfjI__3prime 0 2753754 2753951 1 1812 0.2878787878787879 198 57 "CP4-57 prophage; uncharacterized protein" +BW25113_2626 yfjJ 0 2753906 2754532 1 14327 0.34768740031897927 627 218 "CP4-57 prophage; uncharacterized protein" +BW25113_2626__5prime yfjJ__5prime 0 2753708 2753905 1 1231 0.20202020202020202 198 40 "CP4-57 prophage; uncharacterized protein" +BW25113_2626__3prime yfjJ__3prime 0 2754533 2754730 1 1491 0.21717171717171718 198 43 "CP4-57 prophage; uncharacterized protein" +BW25113_2627 yfjK 0 2754710 2756899 -1 7862 0.1324200913242009 2190 290 "DEAD/H helicase-like protein and CP4-57 putative defective prophage" +BW25113_2627__5prime yfjK__5prime 0 2756900 2757097 -1 435 0.13131313131313133 198 26 "DEAD/H helicase-like protein and CP4-57 putative defective prophage" +BW25113_2627__3prime yfjK__3prime 0 2754512 2754709 -1 1255 0.17676767676767677 198 35 "DEAD/H helicase-like protein and CP4-57 putative defective prophage" +BW25113_2628 yfjL 0 2756896 2758512 -1 3746 0.11008039579468151 1617 178 "CP4-57 putative defective prophage and DUF4297/DUF1837 polymorphic toxin family protein" +BW25113_2628__5prime yfjL__5prime 0 2758513 2758710 -1 443 0.13636363636363635 198 27 "CP4-57 putative defective prophage and DUF4297/DUF1837 polymorphic toxin family protein" +BW25113_2628__3prime yfjL__3prime 0 2756698 2756895 -1 388 0.11616161616161616 198 23 "CP4-57 putative defective prophage and DUF4297/DUF1837 polymorphic toxin family protein" +BW25113_2629 yfjM 0 2758872 2759135 -1 867 0.11363636363636363 264 30 "CP4-57 prophage; uncharacterized protein" +BW25113_2629__5prime yfjM__5prime 0 2759136 2759333 -1 245 0.11616161616161616 198 23 "CP4-57 prophage; uncharacterized protein" +BW25113_2629__3prime yfjM__3prime 0 2758674 2758871 -1 1030 0.16666666666666666 198 33 "CP4-57 prophage; uncharacterized protein" +BW25113_2630 rnlA 0 2759277 2760350 1 3468 0.15921787709497207 1074 171 "CP4-57 prophage; RNase LS" +BW25113_2630__5prime rnlA__5prime 0 2759079 2759276 1 366 0.13636363636363635 198 27 "CP4-57 prophage; RNase LS" +BW25113_2630__3prime rnlA__3prime 0 2760351 2760548 1 434 0.18181818181818182 198 36 "CP4-57 prophage; RNase LS" +BW25113_2631 rnlB 0 2760343 2760714 1 929 0.13172043010752688 372 49 "CP4-57 prophage; uncharacterized protein" +BW25113_2631__5prime rnlB__5prime 0 2760145 2760342 1 214 0.08080808080808081 198 16 "CP4-57 prophage; uncharacterized protein" +BW25113_2631__3prime rnlB__3prime 0 2760715 2760912 1 618 0.15656565656565657 198 31 "CP4-57 prophage; uncharacterized protein" +BW25113_2632 yfjP 0 2761069 2761932 1 2461 0.12268518518518519 864 106 "CP4-57 prophage; 50S ribosome-binding GTPase family protein" +BW25113_2632__5prime yfjP__5prime 0 2760871 2761068 1 230 0.07575757575757576 198 15 "CP4-57 prophage; 50S ribosome-binding GTPase family protein" +BW25113_2632__3prime yfjP__3prime 0 2761933 2762130 1 825 0.16161616161616163 198 32 "CP4-57 prophage; 50S ribosome-binding GTPase family protein" +BW25113_2633 yfjQ 0 2762024 2762845 1 1980 0.11313868613138686 822 93 "CP4-57 prophage; uncharacterized protein" +BW25113_2633__5prime yfjQ__5prime 0 2761826 2762023 1 665 0.14646464646464646 198 29 "CP4-57 prophage; uncharacterized protein" +BW25113_2633__3prime yfjQ__3prime 0 2762846 2763043 1 321 0.09595959595959595 198 19 "CP4-57 prophage; uncharacterized protein" +BW25113_2634 yfjR 0 2763062 2763763 1 1613 0.10541310541310542 702 74 "CP4-57 prophage; putative DNA-binding transcriptional regulator" +BW25113_2634__5prime yfjR__5prime 0 2762864 2763061 1 321 0.09595959595959595 198 19 "CP4-57 prophage; putative DNA-binding transcriptional regulator" +BW25113_2634__3prime yfjR__3prime 0 2763764 2763961 1 1035 0.1919191919191919 198 38 "CP4-57 prophage; putative DNA-binding transcriptional regulator" +BW25113_2635 ypjK 0 2763804 2764040 1 882 0.1350210970464135 237 32 "CP4-57 prophage; putative inner membrane protein" +BW25113_2635__5prime ypjK__5prime 0 2763606 2763803 1 465 0.1111111111111111 198 22 "CP4-57 prophage; putative inner membrane protein" +BW25113_2635__3prime ypjK__3prime 0 2764041 2764238 1 591 0.12626262626262627 198 25 "CP4-57 prophage; putative inner membrane protein" +BW25113_2636 yfjS 0 2764040 2764483 1 1191 0.1373873873873874 444 61 "CP4-57 prophage; uncharacterized protein" +BW25113_2636__5prime yfjS__5prime 0 2763842 2764039 1 874 0.15656565656565657 198 31 "CP4-57 prophage; uncharacterized protein" +BW25113_2636__3prime yfjS__3prime 0 2764484 2764681 1 464 0.10101010101010101 198 20 "CP4-57 prophage; uncharacterized protein" +BW25113_2637 yfjT 0 2764507 2764974 1 883 0.09188034188034189 468 43 "CP4-57 prophage; putative periplasmic protein" +BW25113_2637__5prime yfjT__5prime 0 2764309 2764506 1 425 0.15151515151515152 198 30 "CP4-57 prophage; putative periplasmic protein" +BW25113_2637__3prime yfjT__3prime 0 2764975 2765172 1 339 0.06060606060606061 198 12 "CP4-57 prophage; putative periplasmic protein" +BW25113_2638 yfjU 0 2765361 2765513 -1 344 0.17647058823529413 153 27 "2765360_2765513" +BW25113_2638__5prime yfjU__5prime 0 2765514 2765711 -1 653 0.11616161616161616 198 23 "2765360_2765513" +BW25113_2638__3prime yfjU__3prime 0 2765163 2765360 -1 214 0.045454545454545456 198 9 "2765360_2765513" +BW25113_2641 yfjV 0 2765526 2766541 -1 3385 0.140748031496063 1016 143 "2765525_2766541" +BW25113_2641__5prime yfjV__5prime 0 2766542 2766739 -1 810 0.1919191919191919 198 38 "2765525_2766541" +BW25113_2641__3prime yfjV__3prime 0 2765328 2765525 -1 399 0.16666666666666666 198 33 "2765525_2766541" +BW25113_2642 yfjW 0 2766677 2768380 1 3892 0.09213615023474178 1704 157 "CP4-57 prophage; putative inner membrane protein" +BW25113_2642__5prime yfjW__5prime 0 2766479 2766676 1 1265 0.2727272727272727 198 54 "CP4-57 prophage; putative inner membrane protein" +BW25113_2642__3prime yfjW__3prime 0 2768381 2768578 1 1866 0.2222222222222222 198 44 "CP4-57 prophage; putative inner membrane protein" +BW25113_4644 ypjI 0 2768904 2769175 1 855 0.14705882352941177 272 40 "2768903_2769175" +BW25113_4644__5prime ypjI__5prime 0 2768706 2768903 1 368 0.10606060606060606 198 21 "2768903_2769175" +BW25113_4644__3prime ypjI__3prime 0 2769176 2769373 1 721 0.15151515151515152 198 30 "2768903_2769175" +BW25113_2643 yfjX 0 2769278 2769736 1 1705 0.12418300653594772 459 57 "CP4-57 prophage; putative antirestriction protein" +BW25113_2643__5prime yfjX__5prime 0 2769080 2769277 1 767 0.16666666666666666 198 33 "CP4-57 prophage; putative antirestriction protein" +BW25113_2643__3prime yfjX__3prime 0 2769737 2769934 1 910 0.19696969696969696 198 39 "CP4-57 prophage; putative antirestriction protein" +BW25113_2644 yfjY 0 2769745 2770227 1 1760 0.16770186335403728 483 81 "CP4-57 prophage; putative DNA repair protein" +BW25113_2644__5prime yfjY__5prime 0 2769547 2769744 1 752 0.10101010101010101 198 20 "CP4-57 prophage; putative DNA repair protein" +BW25113_2644__3prime yfjY__3prime 0 2770228 2770425 1 255 0.10101010101010101 198 20 "CP4-57 prophage; putative DNA repair protein" +BW25113_4548 ypjJ 0 2770236 2770436 1 255 0.09950248756218906 201 20 "uncharacterized protein" +BW25113_4548__5prime ypjJ__5prime 0 2770038 2770235 1 259 0.11616161616161616 198 23 "uncharacterized protein" +BW25113_4548__3prime ypjJ__3prime 0 2770437 2770634 1 923 0.13636363636363635 198 27 "uncharacterized protein" +BW25113_2645 yfjZ 0 2770474 2770791 1 1536 0.18553459119496854 318 59 "CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system" +BW25113_2645__5prime yfjZ__5prime 0 2770276 2770473 1 605 0.1111111111111111 198 22 "CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system" +BW25113_2645__3prime yfjZ__3prime 0 2770792 2770989 1 940 0.19696969696969696 198 39 "CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system" +BW25113_2646 ypjF 0 2770812 2771141 1 974 0.14242424242424243 330 47 "CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system" +BW25113_2646__5prime ypjF__5prime 0 2770614 2770811 1 1211 0.22727272727272727 198 45 "CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system" +BW25113_2646__3prime ypjF__3prime 0 2771142 2771339 1 133 0.050505050505050504 198 10 "CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system" +BW25113_4645 psaA 0 2771331 2771344 1 11 0.07142857142857142 14 1 "2771330_2771344" +BW25113_4645__5prime psaA__5prime 0 2771133 2771330 1 145 0.05555555555555555 198 11 "2771330_2771344" +BW25113_4645__3prime psaA__3prime 0 2771345 2771542 1 461 0.06565656565656566 198 13 "2771330_2771344" +BW25113_2647 ypjA 0 2771505 2776085 -1 49057 0.2554027504911591 4581 1170 "adhesin-like autotransporter" +BW25113_2647__5prime ypjA__5prime 0 2776086 2776283 -1 7370 0.5303030303030303 198 105 "adhesin-like autotransporter" +BW25113_2647__3prime ypjA__3prime 0 2771307 2771504 -1 463 0.06565656565656566 198 13 "adhesin-like autotransporter" +BW25113_2648 pinH 0 2776424 2776663 -1 7253 0.44166666666666665 240 106 "2776423_2776663" +BW25113_2648__5prime pinH__5prime 0 2776664 2776861 -1 5400 0.37373737373737376 198 74 "2776423_2776663" +BW25113_2648__3prime pinH__3prime 0 2776226 2776423 -1 248 0.09090909090909091 198 18 "2776423_2776663" +BW25113_2650 ypjC 0 2776997 2778370 -1 5072 0.12663755458515283 1374 174 "2776996_2778370" +BW25113_2650__5prime ypjC__5prime 0 2778371 2778568 -1 156 0.045454545454545456 198 9 "2776996_2778370" +BW25113_2650__3prime ypjC__3prime 0 2776799 2776996 -1 827 0.15656565656565657 198 31 "2776996_2778370" +BW25113_2652 ileY 0 2779121 2779196 -1 2331 0.35526315789473684 76 27 "tRNA-Ile" +BW25113_2652__5prime ileY__5prime 0 2779197 2779394 -1 1734 0.30303030303030304 198 60 "tRNA-Ile" +BW25113_2652__3prime ileY__3prime 0 2778923 2779120 -1 2745 0.4090909090909091 198 81 "tRNA-Ile" +BW25113_4462 ygaQ 0 2779756 2782008 1 11543 0.17576564580559254 2253 396 "2779755_2782008" +BW25113_4462__5prime ygaQ__5prime 0 2779558 2779755 1 144 0.0707070707070707 198 14 "2779755_2782008" +BW25113_4462__3prime ygaQ__3prime 0 2782009 2782206 1 486 0.11616161616161616 198 23 "2779755_2782008" +BW25113_2659 csiD 0 2782344 2783321 1 1893 0.081799591002045 978 80 "carbon starvation protein" +BW25113_2659__5prime csiD__5prime 0 2782146 2782343 1 409 0.10606060606060606 198 21 "carbon starvation protein" +BW25113_2659__3prime csiD__3prime 0 2783322 2783519 1 333 0.08080808080808081 198 16 "carbon starvation protein" +BW25113_2660 lhgO 0 2783341 2784609 1 1613 0.061465721040189124 1269 78 "L-2-hydroxyglutarate oxidase" +BW25113_2660__5prime lhgO__5prime 0 2783143 2783340 1 412 0.09090909090909091 198 18 "L-2-hydroxyglutarate oxidase" +BW25113_2660__3prime lhgO__3prime 0 2784610 2784807 1 144 0.06060606060606061 198 12 "L-2-hydroxyglutarate oxidase" +BW25113_2661 gabD 0 2784632 2786080 1 1973 0.07177363699102829 1449 104 "succinate-semialdehyde dehydrogenase I and NADP-dependent" +BW25113_2661__5prime gabD__5prime 0 2784434 2784631 1 97 0.03535353535353535 198 7 "succinate-semialdehyde dehydrogenase I and NADP-dependent" +BW25113_2661__3prime gabD__3prime 0 2786081 2786278 1 202 0.04040404040404041 198 8 "succinate-semialdehyde dehydrogenase I and NADP-dependent" +BW25113_2662 gabT 0 2786094 2787374 1 3573 0.08508977361436378 1281 109 "4-aminobutyrate aminotransferase and PLP-dependent" +BW25113_2662__5prime gabT__5prime 0 2785896 2786093 1 160 0.04040404040404041 198 8 "4-aminobutyrate aminotransferase and PLP-dependent" +BW25113_2662__3prime gabT__3prime 0 2787375 2787572 1 261 0.08585858585858586 198 17 "4-aminobutyrate aminotransferase and PLP-dependent" +2787386_2787522 2787386_2787522 0 2787387 2787522 1 250 0.11764705882352941 136 16 "2787386_2787522" +2787386_2787522__5prime 2787386_2787522__5prime 0 2787189 2787386 1 1246 0.1717171717171717 198 34 "2787386_2787522" +2787386_2787522__3prime 2787386_2787522__3prime 0 2787523 2787720 1 212 0.06060606060606061 198 12 "2787386_2787522" +BW25113_2663 gabP 0 2787612 2789012 1 8933 0.1934332619557459 1401 271 "gamma-aminobutyrate transporter" +BW25113_2663__5prime gabP__5prime 0 2787414 2787611 1 265 0.08585858585858586 198 17 "gamma-aminobutyrate transporter" +BW25113_2663__3prime gabP__3prime 0 2789013 2789210 1 1557 0.2474747474747475 198 49 "gamma-aminobutyrate transporter" +BW25113_2664 csiR 0 2789033 2789695 1 1836 0.1085972850678733 663 72 "transcriptional repressor of csiD" +BW25113_2664__5prime csiR__5prime 0 2788835 2789032 1 1974 0.30808080808080807 198 61 "transcriptional repressor of csiD" +BW25113_2664__3prime csiR__3prime 0 2789696 2789893 1 849 0.14646464646464646 198 29 "transcriptional repressor of csiD" +BW25113_2665 ygaU 0 2789696 2790145 -1 1996 0.14444444444444443 450 65 "uncharacterized protein" +BW25113_2665__5prime ygaU__5prime 0 2790146 2790343 -1 796 0.23737373737373738 198 47 "uncharacterized protein" +BW25113_2665__3prime ygaU__3prime 0 2789498 2789695 -1 186 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_2666 yqaE 0 2790229 2790387 -1 401 0.15723270440251572 159 25 "cyaR sRNA-regulated protein" +BW25113_2666__5prime yqaE__5prime 0 2790388 2790585 -1 319 0.08080808080808081 198 16 "cyaR sRNA-regulated protein" +BW25113_2666__3prime yqaE__3prime 0 2790031 2790228 -1 1262 0.20202020202020202 198 40 "cyaR sRNA-regulated protein" +BW25113_2667 ygaV 0 2790570 2790869 1 2981 0.30333333333333334 300 91 "tributyltin-inducible repressor of ygaVP" +BW25113_2667__5prime ygaV__5prime 0 2790372 2790569 1 319 0.08080808080808081 198 16 "tributyltin-inducible repressor of ygaVP" +BW25113_2667__3prime ygaV__3prime 0 2790870 2791067 1 1068 0.2878787878787879 198 57 "tributyltin-inducible repressor of ygaVP" +BW25113_2668 ygaP 0 2790879 2791403 1 3100 0.26285714285714284 525 138 "DUF2892 family inner membrane rhodanese" +BW25113_2668__5prime ygaP__5prime 0 2790681 2790878 1 2644 0.3787878787878788 198 75 "DUF2892 family inner membrane rhodanese" +BW25113_2668__3prime ygaP__3prime 0 2791404 2791601 1 2590 0.2676767676767677 198 53 "DUF2892 family inner membrane rhodanese" +2791411_2791441 2791411_2791441 0 2791412 2791441 1 126 0.16666666666666666 30 5 "2791411_2791441" +2791411_2791441__5prime 2791411_2791441__5prime 0 2791214 2791411 1 1488 0.26262626262626265 198 52 "2791411_2791441" +2791411_2791441__3prime 2791411_2791441__3prime 0 2791442 2791639 1 3020 0.30808080808080807 198 61 "2791411_2791441" +BW25113_2669 stpA 0 2791450 2791854 -1 4694 0.2765432098765432 405 112 "DNA binding protein and nucleoid-associated" +BW25113_2669__5prime stpA__5prime 0 2791855 2792052 -1 131 0.050505050505050504 198 10 "DNA binding protein and nucleoid-associated" +BW25113_2669__3prime stpA__3prime 0 2791252 2791449 -1 1604 0.2777777777777778 198 55 "DNA binding protein and nucleoid-associated" +BW25113_2670 alaE 0 2792523 2792972 1 1923 0.2111111111111111 450 95 "alanine exporter and alanine-inducible and stress-responsive" +BW25113_2670__5prime alaE__5prime 0 2792325 2792522 1 119 0.050505050505050504 198 10 "alanine exporter and alanine-inducible and stress-responsive" +BW25113_2670__3prime alaE__3prime 0 2792973 2793170 1 789 0.12626262626262627 198 25 "alanine exporter and alanine-inducible and stress-responsive" +BW25113_2671 ygaC 0 2793009 2793353 -1 1422 0.13623188405797101 345 47 "uncharacterized protein" +BW25113_2671__5prime ygaC__5prime 0 2793354 2793551 -1 486 0.10101010101010101 198 20 "uncharacterized protein" +BW25113_2671__3prime ygaC__3prime 0 2792811 2793008 -1 852 0.18181818181818182 198 36 "uncharacterized protein" +BW25113_2672 ygaM 0 2793505 2793834 1 697 0.09696969696969697 330 32 "DUF883 family protein and putative membrane-anchored ribosome-binding protein" +BW25113_2672__5prime ygaM__5prime 0 2793307 2793504 1 507 0.10101010101010101 198 20 "DUF883 family protein and putative membrane-anchored ribosome-binding protein" +BW25113_2672__3prime ygaM__3prime 0 2793835 2794032 1 253 0.08585858585858586 198 17 "DUF883 family protein and putative membrane-anchored ribosome-binding protein" +BW25113_2673 nrdH 0 2794082 2794327 1 434 0.07317073170731707 246 18 "hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein" +BW25113_2673__5prime nrdH__5prime 0 2793884 2794081 1 209 0.06565656565656566 198 13 "hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein" +BW25113_2673__3prime nrdH__3prime 0 2794328 2794525 1 452 0.06060606060606061 198 12 "hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein" +BW25113_2674 nrdI 0 2794324 2794734 1 653 0.0681265206812652 411 28 "NrdEF cluster assembly flavodoxin" +BW25113_2674__5prime nrdI__5prime 0 2794126 2794323 1 434 0.09090909090909091 198 18 "NrdEF cluster assembly flavodoxin" +BW25113_2674__3prime nrdI__3prime 0 2794735 2794932 1 559 0.15151515151515152 198 30 "NrdEF cluster assembly flavodoxin" +BW25113_2675 nrdE 0 2794707 2796851 1 4946 0.09836829836829837 2145 211 "ribonucleoside-diphosphate reductase 2 and alpha subunit" +BW25113_2675__5prime nrdE__5prime 0 2794509 2794706 1 171 0.06060606060606061 198 12 "ribonucleoside-diphosphate reductase 2 and alpha subunit" +BW25113_2675__3prime nrdE__3prime 0 2796852 2797049 1 418 0.0707070707070707 198 14 "ribonucleoside-diphosphate reductase 2 and alpha subunit" +BW25113_2676 nrdF 0 2796861 2797820 1 4251 0.171875 960 165 "ribonucleoside-diphosphate reductase 2 and beta subunit and ferritin-like protein" +BW25113_2676__5prime nrdF__5prime 0 2796663 2796860 1 307 0.08080808080808081 198 16 "ribonucleoside-diphosphate reductase 2 and beta subunit and ferritin-like protein" +BW25113_2676__3prime nrdF__3prime 0 2797821 2798018 1 757 0.15151515151515152 198 30 "ribonucleoside-diphosphate reductase 2 and beta subunit and ferritin-like protein" +BW25113_2677 proV 0 2798174 2799376 1 27411 0.4405652535328346 1203 530 "glycine betaine transporter subunit" +BW25113_2677__5prime proV__5prime 0 2797976 2798173 1 1081 0.18686868686868688 198 37 "glycine betaine transporter subunit" +BW25113_2677__3prime proV__3prime 0 2799377 2799574 1 903 0.18181818181818182 198 36 "glycine betaine transporter subunit" +BW25113_2678 proW 0 2799369 2800433 1 2688 0.11643192488262911 1065 124 "glycine betaine transporter subunit" +BW25113_2678__5prime proW__5prime 0 2799171 2799368 1 2204 0.31313131313131315 198 62 "glycine betaine transporter subunit" +BW25113_2678__3prime proW__3prime 0 2800434 2800631 1 413 0.16161616161616163 198 32 "glycine betaine transporter subunit" +BW25113_2679 proX 0 2800491 2801483 1 2055 0.11178247734138973 993 111 "glycine betaine transporter subunit" +BW25113_2679__5prime proX__5prime 0 2800293 2800490 1 325 0.10606060606060606 198 21 "glycine betaine transporter subunit" +BW25113_2679__3prime proX__3prime 0 2801484 2801681 1 176 0.03535353535353535 198 7 "glycine betaine transporter subunit" +2801489_2801573 2801489_2801573 0 2801490 2801573 1 96 0.047619047619047616 84 4 "2801489_2801573" +2801489_2801573__5prime 2801489_2801573__5prime 0 2801292 2801489 1 257 0.08080808080808081 198 16 "2801489_2801573" +2801489_2801573__3prime 2801489_2801573__3prime 0 2801574 2801771 1 595 0.10606060606060606 198 21 "2801489_2801573" +BW25113_2681 ygaY 0 2801675 2802852 1 2624 0.09083191850594227 1178 107 "2801674_2802852" +BW25113_2681__5prime ygaY__5prime 0 2801477 2801674 1 176 0.03535353535353535 198 7 "2801674_2802852" +BW25113_2681__3prime ygaY__3prime 0 2802853 2803050 1 294 0.1111111111111111 198 22 "2801674_2802852" +BW25113_2682 ygaZ 0 2802976 2803713 1 1910 0.12059620596205962 738 89 "putative L-valine exporter and norvaline resistance protein" +BW25113_2682__5prime ygaZ__5prime 0 2802778 2802975 1 281 0.10101010101010101 198 20 "putative L-valine exporter and norvaline resistance protein" +BW25113_2682__3prime ygaZ__3prime 0 2803714 2803911 1 260 0.09595959595959595 198 19 "putative L-valine exporter and norvaline resistance protein" +BW25113_2683 ygaH 0 2803703 2804038 1 939 0.13392857142857142 336 45 "putative L-valine exporter and norvaline resistance protein" +BW25113_2683__5prime ygaH__5prime 0 2803505 2803702 1 539 0.12626262626262627 198 25 "putative L-valine exporter and norvaline resistance protein" +BW25113_2683__3prime ygaH__3prime 0 2804039 2804236 1 272 0.09595959595959595 198 19 "putative L-valine exporter and norvaline resistance protein" +BW25113_2684 mprA 0 2804129 2804659 1 835 0.09981167608286252 531 53 "transcriptional repressor of microcin B17 synthesis and multidrug efflux" +BW25113_2684__5prime mprA__5prime 0 2803931 2804128 1 566 0.13636363636363635 198 27 "transcriptional repressor of microcin B17 synthesis and multidrug efflux" +BW25113_2684__3prime mprA__3prime 0 2804660 2804857 1 114 0.050505050505050504 198 10 "transcriptional repressor of microcin B17 synthesis and multidrug efflux" +BW25113_2685 emrA 0 2804786 2805958 1 2499 0.09974424552429667 1173 117 "multidrug efflux system" +BW25113_2685__5prime emrA__5prime 0 2804588 2804785 1 121 0.04040404040404041 198 8 "multidrug efflux system" +BW25113_2685__3prime emrA__3prime 0 2805959 2806156 1 744 0.08585858585858586 198 17 "multidrug efflux system" +BW25113_2686 emrB 0 2805975 2807513 1 2289 0.07602339181286549 1539 117 "multidrug efflux system protein" +BW25113_2686__5prime emrB__5prime 0 2805777 2805974 1 1111 0.12121212121212122 198 24 "multidrug efflux system protein" +BW25113_2686__3prime emrB__3prime 0 2807514 2807711 1 365 0.07575757575757576 198 15 "multidrug efflux system protein" +BW25113_2687 luxS 0 2807577 2808092 -1 872 0.07945736434108527 516 41 "S-ribosylhomocysteine lyase" +BW25113_2687__5prime luxS__5prime 0 2808093 2808290 -1 72 0.025252525252525252 198 5 "S-ribosylhomocysteine lyase" +BW25113_2687__3prime luxS__3prime 0 2807379 2807576 -1 138 0.05555555555555555 198 11 "S-ribosylhomocysteine lyase" +BW25113_4442 micA 0 2808161 2808238 1 35 0.01282051282051282 78 1 "sRNA antisense regulator of ompA and lamB and ompX and and phoP; Hfq-dependent" +BW25113_4442__5prime micA__5prime 0 2807963 2808160 1 214 0.045454545454545456 198 9 "sRNA antisense regulator of ompA and lamB and ompX and and phoP; Hfq-dependent" +BW25113_4442__3prime micA__3prime 0 2808239 2808436 1 414 0.09595959595959595 198 19 "sRNA antisense regulator of ompA and lamB and ompX and and phoP; Hfq-dependent" +BW25113_2688 gshA 0 2808242 2809798 -1 2025 0.06615285806037251 1557 103 "glutamate-cysteine ligase" +BW25113_2688__5prime gshA__5prime 0 2809799 2809996 -1 442 0.13636363636363635 198 27 "glutamate-cysteine ligase" +BW25113_2688__3prime gshA__3prime 0 2808044 2808241 -1 196 0.030303030303030304 198 6 "glutamate-cysteine ligase" +BW25113_2689 yqaA 0 2809871 2810299 -1 866 0.10722610722610723 429 46 "COG1238 family inner membrane protein" +BW25113_2689__5prime yqaA__5prime 0 2810300 2810497 -1 1052 0.09595959595959595 198 19 "COG1238 family inner membrane protein" +BW25113_2689__3prime yqaA__3prime 0 2809673 2809870 -1 182 0.09595959595959595 198 19 "COG1238 family inner membrane protein" +BW25113_2690 yqaB 0 2810296 2810862 -1 2067 0.1164021164021164 567 66 "fructose-1-P and 6-phosphogluconate phosphatase" +BW25113_2690__5prime yqaB__5prime 0 2810863 2811060 -1 37 0.010101010101010102 198 2 "fructose-1-P and 6-phosphogluconate phosphatase" +BW25113_2690__3prime yqaB__3prime 0 2810098 2810295 -1 406 0.10101010101010101 198 20 "fructose-1-P and 6-phosphogluconate phosphatase" +BW25113_2691 argQ 0 2811143 2811219 -1 67 0.06493506493506493 77 5 "tRNA-Arg" +BW25113_2691__5prime argQ__5prime 0 2811220 2811417 -1 113 0.030303030303030304 198 6 "tRNA-Arg" +BW25113_2691__3prime argQ__3prime 0 2810945 2811142 -1 247 0.050505050505050504 198 10 "tRNA-Arg" +BW25113_2692 argZ 0 2811418 2811494 -1 50 0.06493506493506493 77 5 "tRNA-Arg" +BW25113_2692__5prime argZ__5prime 0 2811495 2811692 -1 84 0.030303030303030304 198 6 "tRNA-Arg" +BW25113_2692__3prime argZ__3prime 0 2811220 2811417 -1 113 0.030303030303030304 198 6 "tRNA-Arg" +BW25113_2693 argY 0 2811557 2811633 -1 64 0.06493506493506493 77 5 "tRNA-Arg" +BW25113_2693__5prime argY__5prime 0 2811634 2811831 -1 84 0.020202020202020204 198 4 "tRNA-Arg" +BW25113_2693__3prime argY__3prime 0 2811359 2811556 -1 87 0.04040404040404041 198 8 "tRNA-Arg" +BW25113_2694 argV 0 2811832 2811908 -1 60 0.06493506493506493 77 5 "tRNA-Arg" +BW25113_2694__5prime argV__5prime 0 2811909 2812106 -1 0 0.0 198 0 "tRNA-Arg" +BW25113_2694__3prime argV__3prime 0 2811634 2811831 -1 84 0.020202020202020204 198 4 "tRNA-Arg" +BW25113_2695 serV 0 2811912 2812004 -1 0 0.0 93 0 "tRNA-Ser" +BW25113_2695__5prime serV__5prime 0 2812005 2812202 -1 30 0.020202020202020204 198 4 "tRNA-Ser" +BW25113_2695__3prime serV__3prime 0 2811714 2811911 -1 139 0.04040404040404041 198 8 "tRNA-Ser" +BW25113_2696 csrA 0 2812320 2812505 -1 0 0.0 186 0 "pleiotropic regulatory protein for carbon source metabolism" +BW25113_2696__5prime csrA__5prime 0 2812506 2812703 -1 351 0.07575757575757576 198 15 "pleiotropic regulatory protein for carbon source metabolism" +BW25113_2696__3prime csrA__3prime 0 2812122 2812319 -1 92 0.03535353535353535 198 7 "pleiotropic regulatory protein for carbon source metabolism" +BW25113_2697 alaS 0 2812740 2815370 -1 0 0.0 2631 0 "alanyl-tRNA synthetase" +BW25113_2697__5prime alaS__5prime 0 2815371 2815568 -1 127 0.030303030303030304 198 6 "alanyl-tRNA synthetase" +BW25113_2697__3prime alaS__3prime 0 2812542 2812739 -1 502 0.09090909090909091 198 18 "alanyl-tRNA synthetase" +BW25113_2698 recX 0 2815498 2815998 -1 560 0.0658682634730539 501 33 "regulatory protein for RecA" +BW25113_2698__5prime recX__5prime 0 2815999 2816196 -1 382 0.10606060606060606 198 21 "regulatory protein for RecA" +BW25113_2698__3prime recX__3prime 0 2815300 2815497 -1 13 0.005050505050505051 198 1 "regulatory protein for RecA" +BW25113_2699 recA 0 2816067 2817128 -1 784 0.04896421845574388 1062 52 "DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein forming filaments; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor" +BW25113_2699__5prime recA__5prime 0 2817129 2817326 -1 436 0.13131313131313133 198 26 "DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein forming filaments; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor" +BW25113_2699__3prime recA__3prime 0 2815869 2816066 -1 463 0.13131313131313133 198 26 "DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein forming filaments; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor" +BW25113_2700 pncC 0 2817208 2817705 -1 1906 0.11847389558232932 498 59 "nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase" +BW25113_2700__5prime pncC__5prime 0 2817706 2817903 -1 406 0.10101010101010101 198 20 "nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase" +BW25113_2700__3prime pncC__3prime 0 2817010 2817207 -1 105 0.04040404040404041 198 8 "nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase" +BW25113_2701 mltB 0 2817850 2818935 -1 2502 0.11141804788213629 1086 121 "membrane-bound lytic murein transglycosylase B" +BW25113_2701__5prime mltB__5prime 0 2818936 2819133 -1 256 0.08080808080808081 198 16 "membrane-bound lytic murein transglycosylase B" +BW25113_2701__3prime mltB__3prime 0 2817652 2817849 -1 533 0.09090909090909091 198 18 "membrane-bound lytic murein transglycosylase B" +BW25113_2702 srlA 0 2819191 2819754 1 1249 0.09219858156028368 564 52 "glucitol/sorbitol-specific enzyme IIC component of PTS" +BW25113_2702__5prime srlA__5prime 0 2818993 2819190 1 135 0.04040404040404041 198 8 "glucitol/sorbitol-specific enzyme IIC component of PTS" +BW25113_2702__3prime srlA__3prime 0 2819755 2819952 1 101 0.06060606060606061 198 12 "glucitol/sorbitol-specific enzyme IIC component of PTS" +BW25113_2703 srlE 0 2819751 2820710 1 2038 0.10625 960 102 "glucitol/sorbitol-specific enzyme IIB component of PTS" +BW25113_2703__5prime srlE__5prime 0 2819553 2819750 1 261 0.04040404040404041 198 8 "glucitol/sorbitol-specific enzyme IIB component of PTS" +BW25113_2703__3prime srlE__3prime 0 2820711 2820908 1 411 0.08080808080808081 198 16 "glucitol/sorbitol-specific enzyme IIB component of PTS" +BW25113_2704 srlB 0 2820721 2821092 1 685 0.07795698924731183 372 29 "glucitol/sorbitol-specific enzyme IIA component of PTS" +BW25113_2704__5prime srlB__5prime 0 2820523 2820720 1 273 0.09595959595959595 198 19 "glucitol/sorbitol-specific enzyme IIA component of PTS" +BW25113_2704__3prime srlB__3prime 0 2821093 2821290 1 305 0.12121212121212122 198 24 "glucitol/sorbitol-specific enzyme IIA component of PTS" +BW25113_2705 srlD 0 2821096 2821875 1 1989 0.1282051282051282 780 100 "sorbitol-6-phosphate dehydrogenase" +BW25113_2705__5prime srlD__5prime 0 2820898 2821095 1 356 0.09090909090909091 198 18 "sorbitol-6-phosphate dehydrogenase" +BW25113_2705__3prime srlD__3prime 0 2821876 2822073 1 634 0.2222222222222222 198 44 "sorbitol-6-phosphate dehydrogenase" +2821919_2821948 2821919_2821948 0 2821920 2821948 1 144 0.3448275862068966 29 10 "2821919_2821948" +2821919_2821948__5prime 2821919_2821948__5prime 0 2821722 2821919 1 1205 0.30303030303030304 198 60 "2821919_2821948" +2821919_2821948__3prime 2821919_2821948__3prime 0 2821949 2822146 1 497 0.13636363636363635 198 27 "2821919_2821948" +BW25113_2706 srlM 0 2821980 2822339 1 987 0.1361111111111111 360 49 "sorbitol-responsive srl operon transcriptional activator" +BW25113_2706__5prime srlM__5prime 0 2821782 2821979 1 950 0.2878787878787879 198 57 "sorbitol-responsive srl operon transcriptional activator" +BW25113_2706__3prime srlM__3prime 0 2822340 2822537 1 91 0.030303030303030304 198 6 "sorbitol-responsive srl operon transcriptional activator" +BW25113_2707 srlR 0 2822406 2823179 1 937 0.07622739018087855 774 59 "sorbitol-inducible srl operon transcriptional repressor" +BW25113_2707__5prime srlR__5prime 0 2822208 2822405 1 323 0.06565656565656566 198 13 "sorbitol-inducible srl operon transcriptional repressor" +BW25113_2707__3prime srlR__3prime 0 2823180 2823377 1 562 0.0707070707070707 198 14 "sorbitol-inducible srl operon transcriptional repressor" +BW25113_2708 srlQ 0 2823172 2824137 1 1844 0.07971014492753623 966 77 "D-arabinose 5-phosphate isomerase" +BW25113_2708__5prime srlQ__5prime 0 2822974 2823171 1 398 0.09090909090909091 198 18 "D-arabinose 5-phosphate isomerase" +BW25113_2708__3prime srlQ__3prime 0 2824138 2824335 1 234 0.04040404040404041 198 8 "D-arabinose 5-phosphate isomerase" +BW25113_2709 norR 0 2824134 2825648 -1 2925 0.11683168316831684 1515 177 "anaerobic nitric oxide reductase DNA-binding transcriptional activator" +BW25113_2709__5prime norR__5prime 0 2825649 2825846 -1 142 0.0707070707070707 198 14 "anaerobic nitric oxide reductase DNA-binding transcriptional activator" +BW25113_2709__3prime norR__3prime 0 2823936 2824133 -1 252 0.06060606060606061 198 12 "anaerobic nitric oxide reductase DNA-binding transcriptional activator" +BW25113_2710 norV 0 2825835 2827274 1 3253 0.11527777777777778 1440 166 "anaerobic nitric oxide reductase flavorubredoxin" +BW25113_2710__5prime norV__5prime 0 2825637 2825834 1 64 0.04040404040404041 198 8 "anaerobic nitric oxide reductase flavorubredoxin" +BW25113_2710__3prime norV__3prime 0 2827275 2827472 1 630 0.09090909090909091 198 18 "anaerobic nitric oxide reductase flavorubredoxin" +BW25113_2711 norW 0 2827271 2828404 1 2140 0.08289241622574955 1134 94 "NADH:flavorubredoxin oxidoreductase" +BW25113_2711__5prime norW__5prime 0 2827073 2827270 1 494 0.11616161616161616 198 23 "NADH:flavorubredoxin oxidoreductase" +BW25113_2711__3prime norW__3prime 0 2828405 2828602 1 384 0.14646464646464646 198 29 "NADH:flavorubredoxin oxidoreductase" +2828425_2828507 2828425_2828507 0 2828426 2828507 1 150 0.18292682926829268 82 15 "2828425_2828507" +2828425_2828507__5prime 2828425_2828507__5prime 0 2828228 2828425 1 274 0.06565656565656566 198 13 "2828425_2828507" +2828425_2828507__3prime 2828425_2828507__3prime 0 2828508 2828705 1 425 0.13131313131313133 198 26 "2828425_2828507" +BW25113_2712 hypF 0 2828532 2830784 -1 5615 0.1020861074123391 2253 230 "carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases" +BW25113_2712__5prime hypF__5prime 0 2830785 2830982 -1 368 0.1111111111111111 198 22 "carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases" +BW25113_2712__3prime hypF__3prime 0 2828334 2828531 -1 342 0.1414141414141414 198 28 "carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases" +2830823_2830850 2830823_2830850 0 2830824 2830850 1 0 0.0 27 0 "2830823_2830850" +2830823_2830850__5prime 2830823_2830850__5prime 0 2830626 2830823 1 677 0.10101010101010101 198 20 "2830823_2830850" +2830823_2830850__3prime 2830823_2830850__3prime 0 2830851 2831048 1 431 0.1414141414141414 198 28 "2830823_2830850" +BW25113_2713 hydN 0 2830937 2831464 -1 1309 0.10416666666666667 528 55 "formate dehydrogenase-H and [4Fe-4S] ferredoxin subunit" +BW25113_2713__5prime hydN__5prime 0 2831465 2831662 -1 157 0.030303030303030304 198 6 "formate dehydrogenase-H and [4Fe-4S] ferredoxin subunit" +BW25113_2713__3prime hydN__3prime 0 2830739 2830936 -1 741 0.12626262626262627 198 25 "formate dehydrogenase-H and [4Fe-4S] ferredoxin subunit" +BW25113_2714 ascG 0 2831613 2832623 -1 2299 0.0791295746785361 1011 80 "asc operon transcriptional repressor; prpBC operon repressor" +BW25113_2714__5prime ascG__5prime 0 2832624 2832821 -1 466 0.07575757575757576 198 15 "asc operon transcriptional repressor; prpBC operon repressor" +BW25113_2714__3prime ascG__3prime 0 2831415 2831612 -1 44 0.03535353535353535 198 7 "asc operon transcriptional repressor; prpBC operon repressor" +BW25113_2715 ascF 0 2832883 2834340 1 2869 0.08710562414266118 1458 127 "fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component" +BW25113_2715__5prime ascF__5prime 0 2832685 2832882 1 350 0.09595959595959595 198 19 "fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component" +BW25113_2715__3prime ascF__3prime 0 2834341 2834538 1 251 0.09595959595959595 198 19 "fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component" +BW25113_2716 ascB 0 2834349 2835773 1 2653 0.09403508771929825 1425 134 "cryptic 6-phospho-beta-glucosidase" +BW25113_2716__5prime ascB__5prime 0 2834151 2834348 1 1003 0.20707070707070707 198 41 "cryptic 6-phospho-beta-glucosidase" +BW25113_2716__3prime ascB__3prime 0 2835774 2835971 1 217 0.05555555555555555 198 11 "cryptic 6-phospho-beta-glucosidase" +2835781_2835860 2835781_2835860 0 2835782 2835860 1 46 0.06329113924050633 79 5 "2835781_2835860" +2835781_2835860__5prime 2835781_2835860__5prime 0 2835584 2835781 1 345 0.08080808080808081 198 16 "2835781_2835860" +2835781_2835860__3prime 2835781_2835860__3prime 0 2835861 2836058 1 276 0.04040404040404041 198 8 "2835781_2835860" +BW25113_2717 hycI 0 2835932 2836402 -1 970 0.09766454352441614 471 46 "protease involved in processing C-terminal end of HycE" +BW25113_2717__5prime hycI__5prime 0 2836403 2836600 -1 405 0.10606060606060606 198 21 "protease involved in processing C-terminal end of HycE" +BW25113_2717__3prime hycI__3prime 0 2835734 2835931 -1 239 0.06060606060606061 198 12 "protease involved in processing C-terminal end of HycE" +BW25113_2718 hycH 0 2836395 2836805 -1 1077 0.13138686131386862 411 54 "hydrogenase 3 maturation protein" +BW25113_2718__5prime hycH__5prime 0 2836806 2837003 -1 346 0.10101010101010101 198 20 "hydrogenase 3 maturation protein" +BW25113_2718__3prime hycH__3prime 0 2836197 2836394 -1 289 0.10101010101010101 198 20 "hydrogenase 3 maturation protein" +BW25113_2719 hycG 0 2836802 2837569 -1 1627 0.08463541666666667 768 65 "hydrogenase 3 and formate hydrogenase complex and HycG subunit" +BW25113_2719__5prime hycG__5prime 0 2837570 2837767 -1 464 0.09090909090909091 198 18 "hydrogenase 3 and formate hydrogenase complex and HycG subunit" +BW25113_2719__3prime hycG__3prime 0 2836604 2836801 -1 656 0.15656565656565657 198 31 "hydrogenase 3 and formate hydrogenase complex and HycG subunit" +2837368_2837369 2837368_2837369 0 2837369 2837369 1 0 0.0 1 0 "2837368_2837369" +2837368_2837369__5prime 2837368_2837369__5prime 0 2837171 2837368 1 578 0.07575757575757576 198 15 "2837368_2837369" +2837368_2837369__3prime 2837368_2837369__3prime 0 2837370 2837567 1 147 0.05555555555555555 198 11 "2837368_2837369" +BW25113_2720 hycF 0 2837569 2838111 -1 1114 0.08839779005524862 543 48 "formate hydrogenlyase complex iron-sulfur protein" +BW25113_2720__5prime hycF__5prime 0 2838112 2838309 -1 811 0.10606060606060606 198 21 "formate hydrogenlyase complex iron-sulfur protein" +BW25113_2720__3prime hycF__3prime 0 2837371 2837568 -1 147 0.05555555555555555 198 11 "formate hydrogenlyase complex iron-sulfur protein" +BW25113_2721 hycE 0 2838121 2839830 -1 4915 0.11754385964912281 1710 201 "hydrogenase 3 and large subunit" +BW25113_2721__5prime hycE__5prime 0 2839831 2840028 -1 708 0.09090909090909091 198 18 "hydrogenase 3 and large subunit" +BW25113_2721__3prime hycE__3prime 0 2837923 2838120 -1 297 0.09090909090909091 198 18 "hydrogenase 3 and large subunit" +BW25113_2722 hycD 0 2839848 2840771 -1 2372 0.12012987012987013 924 111 "hydrogenase 3 and membrane subunit" +BW25113_2722__5prime hycD__5prime 0 2840772 2840969 -1 164 0.08585858585858586 198 17 "hydrogenase 3 and membrane subunit" +BW25113_2722__3prime hycD__3prime 0 2839650 2839847 -1 510 0.09090909090909091 198 18 "hydrogenase 3 and membrane subunit" +BW25113_2723 hycC 0 2840774 2842600 -1 4930 0.13683634373289547 1827 250 "hydrogenase 3 and membrane subunit" +BW25113_2723__5prime hycC__5prime 0 2842601 2842798 -1 795 0.14646464646464646 198 29 "hydrogenase 3 and membrane subunit" +BW25113_2723__3prime hycC__3prime 0 2840576 2840773 -1 359 0.08080808080808081 198 16 "hydrogenase 3 and membrane subunit" +BW25113_2724 hycB 0 2842597 2843208 -1 2245 0.14215686274509803 612 87 "hydrogenase 3 and Fe-S subunit" +BW25113_2724__5prime hycB__5prime 0 2843209 2843406 -1 384 0.08585858585858586 198 17 "hydrogenase 3 and Fe-S subunit" +BW25113_2724__3prime hycB__3prime 0 2842399 2842596 -1 814 0.13636363636363635 198 27 "hydrogenase 3 and Fe-S subunit" +BW25113_2725 hycA 0 2843333 2843794 -1 690 0.0670995670995671 462 31 "regulator of the transcriptional regulator FhlA" +BW25113_2725__5prime hycA__5prime 0 2843795 2843992 -1 35 0.005050505050505051 198 1 "regulator of the transcriptional regulator FhlA" +BW25113_2725__3prime hycA__3prime 0 2843135 2843332 -1 558 0.1111111111111111 198 22 "regulator of the transcriptional regulator FhlA" +BW25113_2726 hypA 0 2844006 2844356 1 531 0.08547008547008547 351 30 "protein involved in nickel insertion into hydrogenases 3" +BW25113_2726__5prime hypA__5prime 0 2843808 2844005 1 86 0.020202020202020204 198 4 "protein involved in nickel insertion into hydrogenases 3" +BW25113_2726__3prime hypA__3prime 0 2844357 2844554 1 609 0.12626262626262627 198 25 "protein involved in nickel insertion into hydrogenases 3" +BW25113_2727 hypB 0 2844360 2845232 1 1701 0.09049255441008018 873 79 "GTP hydrolase involved in nickel liganding into hydrogenases" +BW25113_2727__5prime hypB__5prime 0 2844162 2844359 1 325 0.0707070707070707 198 14 "GTP hydrolase involved in nickel liganding into hydrogenases" +BW25113_2727__3prime hypB__3prime 0 2845233 2845430 1 367 0.15656565656565657 198 31 "GTP hydrolase involved in nickel liganding into hydrogenases" +BW25113_2728 hypC 0 2845223 2845495 1 575 0.15018315018315018 273 41 "hydrogenase maturation protein" +BW25113_2728__5prime hypC__5prime 0 2845025 2845222 1 251 0.045454545454545456 198 9 "hydrogenase maturation protein" +BW25113_2728__3prime hypC__3prime 0 2845496 2845693 1 707 0.11616161616161616 198 23 "hydrogenase maturation protein" +BW25113_2729 hypD 0 2845495 2846616 1 2924 0.08377896613190731 1122 94 "hydrogenase maturation protein" +BW25113_2729__5prime hypD__5prime 0 2845297 2845494 1 455 0.15151515151515152 198 30 "hydrogenase maturation protein" +BW25113_2729__3prime hypD__3prime 0 2846617 2846814 1 279 0.06565656565656566 198 13 "hydrogenase maturation protein" +BW25113_2730 hypE 0 2846613 2847623 1 2410 0.11078140454995054 1011 112 "carbamoyl dehydratase and hydrogenases 1 and 2 and 3 maturation protein" +BW25113_2730__5prime hypE__5prime 0 2846415 2846612 1 421 0.08080808080808081 198 16 "carbamoyl dehydratase and hydrogenases 1 and 2 and 3 maturation protein" +BW25113_2730__3prime hypE__3prime 0 2847624 2847821 1 533 0.1717171717171717 198 34 "carbamoyl dehydratase and hydrogenases 1 and 2 and 3 maturation protein" +BW25113_2731 fhlA 0 2847697 2849775 1 5055 0.10101010101010101 2079 210 "formate hydrogenlyase transcriptional activator" +BW25113_2731__5prime fhlA__5prime 0 2847499 2847696 1 468 0.11616161616161616 198 23 "formate hydrogenlyase transcriptional activator" +BW25113_2731__3prime fhlA__3prime 0 2849776 2849973 1 257 0.07575757575757576 198 15 "formate hydrogenlyase transcriptional activator" +2849784_2849808 2849784_2849808 0 2849785 2849808 1 0 0.0 24 0 "2849784_2849808" +2849784_2849808__5prime 2849784_2849808__5prime 0 2849587 2849784 1 217 0.06565656565656566 198 13 "2849784_2849808" +2849784_2849808__3prime 2849784_2849808__3prime 0 2849809 2850006 1 337 0.09595959595959595 198 19 "2849784_2849808" +BW25113_2732 ygbA 0 2849812 2850165 -1 550 0.096045197740113 354 34 "uncharacterized protein" +BW25113_2732__5prime ygbA__5prime 0 2850166 2850363 -1 146 0.04040404040404041 198 8 "uncharacterized protein" +BW25113_2732__3prime ygbA__3prime 0 2849614 2849811 -1 131 0.045454545454545456 198 9 "uncharacterized protein" +BW25113_2733 mutS 0 2850452 2853013 1 8261 0.12997658079625293 2562 333 "methyl-directed mismatch repair protein" +BW25113_2733__5prime mutS__5prime 0 2850254 2850451 1 152 0.050505050505050504 198 10 "methyl-directed mismatch repair protein" +BW25113_2733__3prime mutS__3prime 0 2853014 2853211 1 1829 0.2676767676767677 198 53 "methyl-directed mismatch repair protein" +BW25113_2734 pphB 0 2853119 2853775 1 7307 0.3105022831050228 657 204 "serine/threonine-specific protein phosphatase 2" +BW25113_2734__5prime pphB__5prime 0 2852921 2853118 1 3065 0.40404040404040403 198 80 "serine/threonine-specific protein phosphatase 2" +BW25113_2734__3prime pphB__3prime 0 2853776 2853973 1 1354 0.24242424242424243 198 48 "serine/threonine-specific protein phosphatase 2" +BW25113_2735 ygbI 0 2853826 2854593 -1 2023 0.109375 768 84 "DeoR family putative transcriptional regulator" +BW25113_2735__5prime ygbI__5prime 0 2854594 2854791 -1 27 0.020202020202020204 198 4 "DeoR family putative transcriptional regulator" +BW25113_2735__3prime ygbI__3prime 0 2853628 2853825 -1 1157 0.2828282828282828 198 56 "DeoR family putative transcriptional regulator" +BW25113_2736 ygbJ 0 2854789 2855697 1 1409 0.0858085808580858 909 78 "putative dehydrogenase" +BW25113_2736__5prime ygbJ__5prime 0 2854591 2854788 1 8 0.005050505050505051 198 1 "putative dehydrogenase" +BW25113_2736__3prime ygbJ__3prime 0 2855698 2855895 1 327 0.1111111111111111 198 22 "putative dehydrogenase" +BW25113_2737 ygbK 0 2855694 2856860 1 2240 0.09425878320479864 1167 110 "FliA-regulated DUF1537 family protein" +BW25113_2737__5prime ygbK__5prime 0 2855496 2855693 1 211 0.06565656565656566 198 13 "FliA-regulated DUF1537 family protein" +BW25113_2737__3prime ygbK__3prime 0 2856861 2857058 1 817 0.11616161616161616 198 23 "FliA-regulated DUF1537 family protein" +BW25113_2738 ygbL 0 2856952 2857590 1 1019 0.08450704225352113 639 54 "putative class II aldolase" +BW25113_2738__5prime ygbL__5prime 0 2856754 2856951 1 742 0.1414141414141414 198 28 "putative class II aldolase" +BW25113_2738__3prime ygbL__3prime 0 2857591 2857788 1 684 0.1111111111111111 198 22 "putative class II aldolase" +BW25113_2739 ygbM 0 2857595 2858371 1 1382 0.09009009009009009 777 70 "putative hydroxypyruvate isomerase" +BW25113_2739__5prime ygbM__5prime 0 2857397 2857594 1 133 0.045454545454545456 198 9 "putative hydroxypyruvate isomerase" +BW25113_2739__3prime ygbM__3prime 0 2858372 2858569 1 257 0.1414141414141414 198 28 "putative hydroxypyruvate isomerase" +BW25113_2740 ygbN 0 2858460 2859824 1 2909 0.11428571428571428 1365 156 "putative transporter" +BW25113_2740__5prime ygbN__5prime 0 2858262 2858459 1 226 0.07575757575757576 198 15 "putative transporter" +BW25113_2740__3prime ygbN__3prime 0 2859825 2860022 1 523 0.12121212121212122 198 24 "putative transporter" +2859837_2859855 2859837_2859855 0 2859838 2859855 1 0 0.0 18 0 "2859837_2859855" +2859837_2859855__5prime 2859837_2859855__5prime 0 2859640 2859837 1 403 0.12626262626262627 198 25 "2859837_2859855" +2859837_2859855__3prime 2859837_2859855__3prime 0 2859856 2860053 1 656 0.16666666666666666 198 33 "2859837_2859855" +BW25113_2741 rpoS 0 2859918 2860910 -1 3270 0.15206445115810674 993 151 "RNA polymerase and sigma S (sigma 38) factor" +BW25113_2741__5prime rpoS__5prime 0 2860911 2861108 -1 340 0.0707070707070707 198 14 "RNA polymerase and sigma S (sigma 38) factor" +BW25113_2741__3prime rpoS__3prime 0 2859720 2859917 -1 399 0.12121212121212122 198 24 "RNA polymerase and sigma S (sigma 38) factor" +BW25113_2742 nlpD 0 2860973 2862112 -1 4141 0.13157894736842105 1140 150 "activator of AmiC murein hydrolase activity and lipoprotein" +BW25113_2742__5prime nlpD__5prime 0 2862113 2862310 -1 322 0.06565656565656566 198 13 "activator of AmiC murein hydrolase activity and lipoprotein" +BW25113_2742__3prime nlpD__3prime 0 2860775 2860972 -1 287 0.06565656565656566 198 13 "activator of AmiC murein hydrolase activity and lipoprotein" +BW25113_2743 pcm 0 2862252 2862878 -1 1396 0.08293460925039872 627 52 "L-isoaspartate protein carboxylmethyltransferase type II" +BW25113_2743__5prime pcm__5prime 0 2862879 2863076 -1 870 0.12626262626262627 198 25 "L-isoaspartate protein carboxylmethyltransferase type II" +BW25113_2743__3prime pcm__3prime 0 2862054 2862251 -1 377 0.09090909090909091 198 18 "L-isoaspartate protein carboxylmethyltransferase type II" +BW25113_2744 umpG 0 2862872 2863633 -1 2243 0.11811023622047244 762 90 '"broad specificity 5''(3'')-nucleotidase and polyphosphatase"' +BW25113_2744__5prime umpG__5prime 0 2863634 2863831 -1 302 0.07575757575757576 198 15 '"broad specificity 5''(3'')-nucleotidase and polyphosphatase"' +BW25113_2744__3prime umpG__3prime 0 2862674 2862871 -1 263 0.10101010101010101 198 20 '"broad specificity 5''(3'')-nucleotidase and polyphosphatase"' +BW25113_2745 truD 0 2863614 2864663 -1 2410 0.09333333333333334 1050 98 "tRNA(Glu) pseudouridine(13) synthase" +BW25113_2745__5prime truD__5prime 0 2864664 2864861 -1 60 0.005050505050505051 198 1 "tRNA(Glu) pseudouridine(13) synthase" +BW25113_2745__3prime truD__3prime 0 2863416 2863613 -1 782 0.14646464646464646 198 29 "tRNA(Glu) pseudouridine(13) synthase" +BW25113_2746 ispF 0 2864660 2865139 -1 60 0.0020833333333333333 480 1 "2C-methyl-D-erythritol 2 and 4-cyclodiphosphate synthase" +BW25113_2746__5prime ispF__5prime 0 2865140 2865337 -1 278 0.025252525252525252 198 5 "2C-methyl-D-erythritol 2 and 4-cyclodiphosphate synthase" +BW25113_2746__3prime ispF__3prime 0 2864462 2864659 -1 202 0.06060606060606061 198 12 "2C-methyl-D-erythritol 2 and 4-cyclodiphosphate synthase" +BW25113_2747 ispD 0 2865139 2865849 -1 291 0.008438818565400843 711 6 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" +BW25113_2747__5prime ispD__5prime 0 2865850 2866047 -1 84 0.025252525252525252 198 5 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" +BW25113_2747__3prime ispD__3prime 0 2864941 2865138 -1 0 0.0 198 0 "4-diphosphocytidyl-2C-methyl-D-erythritol synthase" +BW25113_2748 ftsB 0 2865868 2866179 -1 70 0.009615384615384616 312 3 "cell division protein" +BW25113_2748__5prime ftsB__5prime 0 2866180 2866377 -1 879 0.13636363636363635 198 27 "cell division protein" +BW25113_2748__3prime ftsB__3prime 0 2865670 2865867 -1 27 0.015151515151515152 198 3 "cell division protein" +BW25113_2749 ygbE 0 2866373 2866696 -1 1463 0.19135802469135801 324 62 "DUF3561 family inner membrane protein" +BW25113_2749__5prime ygbE__5prime 0 2866697 2866894 -1 189 0.06060606060606061 198 12 "DUF3561 family inner membrane protein" +BW25113_2749__3prime ygbE__3prime 0 2866175 2866372 -1 842 0.13131313131313133 198 26 "DUF3561 family inner membrane protein" +BW25113_2750 cysC 0 2866746 2867351 -1 1339 0.09900990099009901 606 60 '"adenosine 5''-phosphosulfate kinase"' +BW25113_2750__5prime cysC__5prime 0 2867352 2867549 -1 182 0.04040404040404041 198 8 '"adenosine 5''-phosphosulfate kinase"' +BW25113_2750__3prime cysC__3prime 0 2866548 2866745 -1 955 0.1919191919191919 198 38 '"adenosine 5''-phosphosulfate kinase"' +BW25113_2751 cysN 0 2867351 2868778 -1 3441 0.09803921568627451 1428 140 "sulfate adenylyltransferase and subunit 1" +BW25113_2751__5prime cysN__5prime 0 2868779 2868976 -1 408 0.11616161616161616 198 23 "sulfate adenylyltransferase and subunit 1" +BW25113_2751__3prime cysN__3prime 0 2867153 2867350 -1 840 0.16666666666666666 198 33 "sulfate adenylyltransferase and subunit 1" +BW25113_2752 cysD 0 2868780 2869688 -1 2748 0.12871287128712872 909 117 "sulfate adenylyltransferase and subunit 2" +BW25113_2752__5prime cysD__5prime 0 2869689 2869886 -1 687 0.12626262626262627 198 25 "sulfate adenylyltransferase and subunit 2" +BW25113_2752__3prime cysD__3prime 0 2868582 2868779 -1 324 0.07575757575757576 198 15 "sulfate adenylyltransferase and subunit 2" +BW25113_2753 iap 0 2869940 2870977 1 4734 0.1724470134874759 1038 179 "aminopeptidase in alkaline phosphatase isozyme conversion" +BW25113_2753__5prime iap__5prime 0 2869742 2869939 1 948 0.14646464646464646 198 29 "aminopeptidase in alkaline phosphatase isozyme conversion" +BW25113_2753__3prime iap__3prime 0 2870978 2871175 1 439 0.09595959595959595 198 19 "aminopeptidase in alkaline phosphatase isozyme conversion" +BW25113_2754 ygbF 0 2871928 2872212 -1 1115 0.14035087719298245 285 40 "CRISPR adaptation ssRNA endonuclease" +BW25113_2754__5prime ygbF__5prime 0 2872213 2872410 -1 603 0.1111111111111111 198 22 "CRISPR adaptation ssRNA endonuclease" +BW25113_2754__3prime ygbF__3prime 0 2871730 2871927 -1 129 0.03535353535353535 198 7 "CRISPR adaptation ssRNA endonuclease" +BW25113_2755 ygbT 0 2872214 2873131 -1 3167 0.1318082788671024 918 121 "multifunctional endonuclease Cas1 and CRISPR adaptation protein; DNA repair enzyme" +BW25113_2755__5prime ygbT__5prime 0 2873132 2873329 -1 2053 0.35353535353535354 198 70 "multifunctional endonuclease Cas1 and CRISPR adaptation protein; DNA repair enzyme" +BW25113_2755__3prime ygbT__3prime 0 2872016 2872213 -1 844 0.1414141414141414 198 28 "multifunctional endonuclease Cas1 and CRISPR adaptation protein; DNA repair enzyme" +BW25113_2756 casE 0 2873147 2873746 -1 4475 0.28 600 168 "CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2756__5prime casE__5prime 0 2873747 2873944 -1 1190 0.20202020202020202 198 40 "CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2756__3prime casE__3prime 0 2872949 2873146 -1 1028 0.18181818181818182 198 36 "CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2757 casD 0 2873733 2874407 -1 5415 0.26666666666666666 675 180 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2757__5prime casD__5prime 0 2874408 2874605 -1 1225 0.19696969696969696 198 39 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2757__3prime casD__3prime 0 2873535 2873732 -1 1536 0.29292929292929293 198 58 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2758 casC 0 2874410 2875501 -1 3876 0.1575091575091575 1092 172 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2758__5prime casC__5prime 0 2875502 2875699 -1 1492 0.2474747474747475 198 49 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2758__3prime casC__3prime 0 2874212 2874409 -1 842 0.2222222222222222 198 44 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2759 casB 0 2875514 2875996 -1 3829 0.2774327122153209 483 134 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2759__5prime casB__5prime 0 2875997 2876194 -1 1819 0.30808080808080807 198 61 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2759__3prime casB__3prime 0 2875316 2875513 -1 545 0.1414141414141414 198 28 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2760 casA 0 2875989 2877497 -1 21590 0.3704440026507621 1509 559 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2760__5prime casA__5prime 0 2877498 2877695 -1 312 0.13636363636363635 198 27 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2760__3prime casA__3prime 0 2875791 2875988 -1 1947 0.3787878787878788 198 75 "CRISP RNA (crRNA) containing Cascade antiviral complex protein" +BW25113_2761 ygcB 0 2877912 2880578 -1 31623 0.31796025496812896 2667 848 "R-loop helicase-annealase Cas3 needed for Cascade anti-viral activity" +BW25113_2761__5prime ygcB__5prime 0 2880579 2880776 -1 1147 0.26262626262626265 198 52 "R-loop helicase-annealase Cas3 needed for Cascade anti-viral activity" +BW25113_2761__3prime ygcB__3prime 0 2877714 2877911 -1 719 0.16666666666666666 198 33 "R-loop helicase-annealase Cas3 needed for Cascade anti-viral activity" +BW25113_4701 sokX 0 2880713 2880768 1 428 0.42857142857142855 56 24 "sok-related sRNA and function unknown" +BW25113_4701__5prime sokX__5prime 0 2880515 2880712 1 700 0.13636363636363635 198 27 "sok-related sRNA and function unknown" +BW25113_4701__3prime sokX__3prime 0 2880769 2880966 1 3045 0.3181818181818182 198 63 "sok-related sRNA and function unknown" +BW25113_2762 cysH 0 2880937 2881671 -1 4220 0.15510204081632653 735 114 "phosphoadenosine phosphosulfate reductase; PAPS reductase and thioredoxin dependent" +BW25113_2762__5prime cysH__5prime 0 2881672 2881869 -1 1188 0.14646464646464646 198 29 "phosphoadenosine phosphosulfate reductase; PAPS reductase and thioredoxin dependent" +BW25113_2762__3prime cysH__3prime 0 2880739 2880936 -1 2537 0.31313131313131315 198 62 "phosphoadenosine phosphosulfate reductase; PAPS reductase and thioredoxin dependent" +2881692_2881729 2881692_2881729 0 2881693 2881729 1 30 0.05405405405405406 37 2 "2881692_2881729" +2881692_2881729__5prime 2881692_2881729__5prime 0 2881495 2881692 1 396 0.08080808080808081 198 16 "2881692_2881729" +2881692_2881729__3prime 2881692_2881729__3prime 0 2881730 2881927 1 1109 0.12121212121212122 198 24 "2881692_2881729" +BW25113_2763 cysI 0 2881746 2883458 -1 3951 0.08756567425569177 1713 150 "sulfite reductase and beta subunit and NAD(P)-binding and heme-binding" +BW25113_2763__5prime cysI__5prime 0 2883459 2883656 -1 433 0.08585858585858586 198 17 "sulfite reductase and beta subunit and NAD(P)-binding and heme-binding" +BW25113_2763__3prime cysI__3prime 0 2881548 2881745 -1 451 0.09595959595959595 198 19 "sulfite reductase and beta subunit and NAD(P)-binding and heme-binding" +BW25113_2764 cysJ 0 2883458 2885257 -1 3656 0.09 1800 162 "sulfite reductase and alpha subunit and flavoprotein" +BW25113_2764__5prime cysJ__5prime 0 2885258 2885455 -1 5 0.005050505050505051 198 1 "sulfite reductase and alpha subunit and flavoprotein" +BW25113_2764__3prime cysJ__3prime 0 2883260 2883457 -1 210 0.05555555555555555 198 11 "sulfite reductase and alpha subunit and flavoprotein" +BW25113_2765 queD 0 2885573 2885938 1 1256 0.12295081967213115 366 45 "6-pyruvoyl tetrahydrobiopterin synthase (PTPS)" +BW25113_2765__5prime queD__5prime 0 2885375 2885572 1 20 0.010101010101010102 198 2 "6-pyruvoyl tetrahydrobiopterin synthase (PTPS)" +BW25113_2765__3prime queD__3prime 0 2885939 2886136 1 758 0.13131313131313133 198 26 "6-pyruvoyl tetrahydrobiopterin synthase (PTPS)" +BW25113_2766 ygcN 0 2886016 2887287 1 3001 0.09669811320754718 1272 123 "putative oxidoreductase" +BW25113_2766__5prime ygcN__5prime 0 2885818 2886015 1 1194 0.16666666666666666 198 33 "putative oxidoreductase" +BW25113_2766__3prime ygcN__3prime 0 2887288 2887485 1 1021 0.16666666666666666 198 33 "putative oxidoreductase" +BW25113_2767 ygcO 0 2887278 2887538 1 1180 0.1685823754789272 261 44 "putative 4Fe-4S cluster-containing protein" +BW25113_2767__5prime ygcO__5prime 0 2887080 2887277 1 444 0.10606060606060606 198 21 "putative 4Fe-4S cluster-containing protein" +BW25113_2767__3prime ygcO__3prime 0 2887539 2887736 1 457 0.08080808080808081 198 16 "putative 4Fe-4S cluster-containing protein" +BW25113_2768 ygcP 0 2887555 2888130 1 1536 0.10243055555555555 576 59 "putative antiterminator regulatory protein" +BW25113_2768__5prime ygcP__5prime 0 2887357 2887554 1 857 0.16161616161616163 198 32 "putative antiterminator regulatory protein" +BW25113_2768__3prime ygcP__3prime 0 2888131 2888328 1 516 0.0707070707070707 198 14 "putative antiterminator regulatory protein" +2888166_2888233 2888166_2888233 0 2888167 2888233 1 34 0.029850746268656716 67 2 "2888166_2888233" +2888166_2888233__5prime 2888166_2888233__5prime 0 2887969 2888166 1 549 0.07575757575757576 198 15 "2888166_2888233" +2888166_2888233__3prime 2888166_2888233__3prime 0 2888234 2888431 1 616 0.1111111111111111 198 22 "2888166_2888233" +BW25113_2769 ygcQ 0 2888278 2889138 -1 1816 0.11846689895470383 861 102 "putative flavoprotein" +BW25113_2769__5prime ygcQ__5prime 0 2889139 2889336 -1 565 0.1414141414141414 198 28 "putative flavoprotein" +BW25113_2769__3prime ygcQ__3prime 0 2888080 2888277 -1 578 0.08585858585858586 198 17 "putative flavoprotein" +BW25113_2770 ygcR 0 2889135 2889914 -1 2404 0.1371794871794872 780 107 "putative flavoprotein" +BW25113_2770__5prime ygcR__5prime 0 2889915 2890112 -1 632 0.10101010101010101 198 20 "putative flavoprotein" +BW25113_2770__3prime ygcR__3prime 0 2888937 2889134 -1 352 0.10606060606060606 198 21 "putative flavoprotein" +BW25113_2771 ygcS 0 2889892 2891229 -1 3849 0.11958146487294469 1338 160 "putative transporter" +BW25113_2771__5prime ygcS__5prime 0 2891230 2891427 -1 198 0.08080808080808081 198 16 "putative transporter" +BW25113_2771__3prime ygcS__3prime 0 2889694 2889891 -1 442 0.15656565656565657 198 31 "putative transporter" +BW25113_4463 ygcU 0 2891323 2892777 -1 4450 0.1415807560137457 1455 206 "putative FAD-containing dehydrogenase" +BW25113_4463__5prime ygcU__5prime 0 2892778 2892975 -1 1735 0.20202020202020202 198 40 "putative FAD-containing dehydrogenase" +BW25113_4463__3prime ygcU__3prime 0 2891125 2891322 -1 535 0.09090909090909091 198 18 "putative FAD-containing dehydrogenase" +BW25113_2774 ygcW 0 2892847 2893632 -1 9178 0.3256997455470738 786 256 "putative dehydrogenase" +BW25113_2774__5prime ygcW__5prime 0 2893633 2893830 -1 1552 0.3181818181818182 198 63 "putative dehydrogenase" +BW25113_2774__3prime ygcW__3prime 0 2892649 2892846 -1 298 0.13636363636363635 198 27 "putative dehydrogenase" +BW25113_2775 yqcE 0 2893951 2895228 1 7399 0.1572769953051643 1278 201 "MFS transporter family protein" +BW25113_2775__5prime yqcE__5prime 0 2893753 2893950 1 706 0.18181818181818182 198 36 "MFS transporter family protein" +BW25113_2775__3prime yqcE__3prime 0 2895229 2895426 1 591 0.08585858585858586 198 17 "MFS transporter family protein" +BW25113_2776 ygcE 0 2895255 2896733 1 5588 0.14672075726842462 1479 217 "putative kinase" +BW25113_2776__5prime ygcE__5prime 0 2895057 2895254 1 486 0.06060606060606061 198 12 "putative kinase" +BW25113_2776__3prime ygcE__3prime 0 2896734 2896931 1 1302 0.3181818181818182 198 63 "putative kinase" +BW25113_2777 queE 0 2898106 2898777 -1 7334 0.27827380952380953 672 187 "7-carboxy-7-deazaguanine synthase; queosine biosynthesis" +BW25113_2777__5prime queE__5prime 0 2898778 2898975 -1 292 0.05555555555555555 198 11 "7-carboxy-7-deazaguanine synthase; queosine biosynthesis" +BW25113_2777__3prime queE__3prime 0 2897908 2898105 -1 560 0.11616161616161616 198 23 "7-carboxy-7-deazaguanine synthase; queosine biosynthesis" +BW25113_4682 yqcG 0 2898916 2899056 1 26 0.014184397163120567 141 2 "uncharacterized protein" +BW25113_4682__5prime yqcG__5prime 0 2898718 2898915 1 1968 0.21717171717171718 198 43 "uncharacterized protein" +BW25113_4682__3prime yqcG__3prime 0 2899057 2899254 1 843 0.20707070707070707 198 41 "uncharacterized protein" +BW25113_2778 ygcG 0 2899070 2899942 1 6910 0.25773195876288657 873 225 "uncharacterized protein" +BW25113_2778__5prime ygcG__5prime 0 2898872 2899069 1 41 0.020202020202020204 198 4 "uncharacterized protein" +BW25113_2778__3prime ygcG__3prime 0 2899943 2900140 1 417 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_2779 eno 0 2900002 2901300 -1 226 0.006158583525789068 1299 8 "enolase" +BW25113_2779__5prime eno__5prime 0 2901301 2901498 -1 252 0.045454545454545456 198 9 "enolase" +BW25113_2779__3prime eno__3prime 0 2899804 2900001 -1 757 0.19696969696969696 198 39 "enolase" +BW25113_2780 pyrG 0 2901388 2903025 -1 0 0.0 1638 0 "CTP synthetase" +BW25113_2780__5prime pyrG__5prime 0 2903026 2903223 -1 292 0.03535353535353535 198 7 "CTP synthetase" +BW25113_2780__3prime pyrG__3prime 0 2901190 2901387 -1 252 0.045454545454545456 198 9 "CTP synthetase" +BW25113_2781 mazG 0 2903253 2904044 -1 2234 0.09848484848484848 792 78 "nucleoside triphosphate pyrophosphohydrolase" +BW25113_2781__5prime mazG__5prime 0 2904045 2904242 -1 515 0.08080808080808081 198 16 "nucleoside triphosphate pyrophosphohydrolase" +BW25113_2781__3prime mazG__3prime 0 2903055 2903252 -1 379 0.05555555555555555 198 11 "nucleoside triphosphate pyrophosphohydrolase" +BW25113_2782 mazF 0 2904115 2904450 -1 841 0.08630952380952381 336 29 "mRNA interferase toxin and antitoxin is MazE" +BW25113_2782__5prime mazF__5prime 0 2904451 2904648 -1 190 0.1111111111111111 198 22 "mRNA interferase toxin and antitoxin is MazE" +BW25113_2782__3prime mazF__3prime 0 2903917 2904114 -1 1046 0.09595959595959595 198 19 "mRNA interferase toxin and antitoxin is MazE" +BW25113_2783 mazE 0 2904450 2904698 -1 223 0.0963855421686747 249 24 "antitoxin of the ChpA-ChpR toxin-antitoxin system" +BW25113_2783__5prime mazE__5prime 0 2904699 2904896 -1 218 0.03535353535353535 198 7 "antitoxin of the ChpA-ChpR toxin-antitoxin system" +BW25113_2783__3prime mazE__3prime 0 2904252 2904449 -1 623 0.10606060606060606 198 21 "antitoxin of the ChpA-ChpR toxin-antitoxin system" +BW25113_2784 relA 0 2904776 2907010 -1 5615 0.11051454138702461 2235 247 "(p)ppGpp synthetase I/GTP pyrophosphokinase" +BW25113_2784__5prime relA__5prime 0 2907011 2907208 -1 584 0.1414141414141414 198 28 "(p)ppGpp synthetase I/GTP pyrophosphokinase" +BW25113_2784__3prime relA__3prime 0 2904578 2904775 -1 284 0.08080808080808081 198 16 "(p)ppGpp synthetase I/GTP pyrophosphokinase" +BW25113_2785 rlmD 0 2907058 2908359 -1 2439 0.10215053763440861 1302 133 "23S rRNA m(5)U1939 methyltransferase and SAM-dependent" +BW25113_2785__5prime rlmD__5prime 0 2908360 2908557 -1 1568 0.2777777777777778 198 55 "23S rRNA m(5)U1939 methyltransferase and SAM-dependent" +BW25113_2785__3prime rlmD__3prime 0 2906860 2907057 -1 642 0.15656565656565657 198 31 "23S rRNA m(5)U1939 methyltransferase and SAM-dependent" +BW25113_2786 barA 0 2908416 2911172 1 25231 0.24555676459920203 2757 677 "hybrid sensory histidine kinase and in two-component regulatory system with UvrY" +BW25113_2786__5prime barA__5prime 0 2908218 2908415 1 512 0.13131313131313133 198 26 "hybrid sensory histidine kinase and in two-component regulatory system with UvrY" +BW25113_2786__3prime barA__3prime 0 2911173 2911370 1 279 0.06060606060606061 198 12 "hybrid sensory histidine kinase and in two-component regulatory system with UvrY" +2911246_2911341 2911246_2911341 0 2911247 2911341 1 62 0.031578947368421054 95 3 "2911246_2911341" +2911246_2911341__5prime 2911246_2911341__5prime 0 2911049 2911246 1 392 0.10606060606060606 198 21 "2911246_2911341" +2911246_2911341__3prime 2911246_2911341__3prime 0 2911342 2911539 1 441 0.15656565656565657 198 31 "2911246_2911341" +BW25113_2787 gudD 0 2911404 2912744 -1 2768 0.11409395973154363 1341 153 "(D)-glucarate dehydratase 1" +BW25113_2787__5prime gudD__5prime 0 2912745 2912942 -1 599 0.12626262626262627 198 25 "(D)-glucarate dehydratase 1" +BW25113_2787__3prime gudD__3prime 0 2911206 2911403 -1 288 0.07575757575757576 198 15 "(D)-glucarate dehydratase 1" +BW25113_2788 gudX 0 2912765 2914105 -1 4463 0.13348247576435496 1341 179 "glucarate dehydratase-related protein and substrate unknown" +BW25113_2788__5prime gudX__5prime 0 2914106 2914303 -1 362 0.09595959595959595 198 19 "glucarate dehydratase-related protein and substrate unknown" +BW25113_2788__3prime gudX__3prime 0 2912567 2912764 -1 128 0.06060606060606061 198 12 "glucarate dehydratase-related protein and substrate unknown" +BW25113_2789 gudP 0 2914107 2915459 -1 3847 0.11529933481152993 1353 156 "putative D-glucarate transporter" +BW25113_2789__5prime gudP__5prime 0 2915460 2915657 -1 567 0.11616161616161616 198 23 "putative D-glucarate transporter" +BW25113_2789__3prime gudP__3prime 0 2913909 2914106 -1 488 0.15656565656565657 198 31 "putative D-glucarate transporter" +BW25113_2790 yqcA 0 2915894 2916343 -1 1047 0.1 450 45 "short-chain flavodoxin and FMN-binding" +BW25113_2790__5prime yqcA__5prime 0 2916344 2916541 -1 654 0.16161616161616163 198 32 "short-chain flavodoxin and FMN-binding" +BW25113_2790__3prime yqcA__3prime 0 2915696 2915893 -1 487 0.1111111111111111 198 22 "short-chain flavodoxin and FMN-binding" +BW25113_2791 truC 0 2916361 2917143 -1 2138 0.1251596424010217 783 98 "tRNA(Ile1 and Asp) pseudouridine(65) synthase" +BW25113_2791__5prime truC__5prime 0 2917144 2917341 -1 312 0.06565656565656566 198 13 "tRNA(Ile1 and Asp) pseudouridine(65) synthase" +BW25113_2791__3prime truC__3prime 0 2916163 2916360 -1 394 0.10606060606060606 198 21 "tRNA(Ile1 and Asp) pseudouridine(65) synthase" +BW25113_2792 yqcC 0 2917143 2917472 -1 814 0.09090909090909091 330 30 "DUF446 family protein" +BW25113_2792__5prime yqcC__5prime 0 2917473 2917670 -1 465 0.1414141414141414 198 28 "DUF446 family protein" +BW25113_2792__3prime yqcC__3prime 0 2916945 2917142 -1 536 0.14646464646464646 198 29 "DUF446 family protein" +BW25113_4408 csrB 0 2917515 2917883 -1 1428 0.17073170731707318 369 63 "CsrA-binding sRNA and antagonizing CsrA regulation" +BW25113_4408__5prime csrB__5prime 0 2917884 2918081 -1 194 0.045454545454545456 198 9 "CsrA-binding sRNA and antagonizing CsrA regulation" +BW25113_4408__3prime csrB__3prime 0 2917317 2917514 -1 760 0.13636363636363635 198 27 "CsrA-binding sRNA and antagonizing CsrA regulation" +BW25113_2793 syd 0 2918094 2918639 -1 1603 0.1446886446886447 546 79 "SecY-interacting protein" +BW25113_2793__5prime syd__5prime 0 2918640 2918837 -1 284 0.08080808080808081 198 16 "SecY-interacting protein" +BW25113_2793__3prime syd__3prime 0 2917896 2918093 -1 214 0.05555555555555555 198 11 "SecY-interacting protein" +BW25113_2794 queF 0 2918707 2919555 1 2613 0.1248527679623086 849 106 "7-cyano-7-deazaguanine reductase (NADPH-dependent)" +BW25113_2794__5prime queF__5prime 0 2918509 2918706 1 394 0.09090909090909091 198 18 "7-cyano-7-deazaguanine reductase (NADPH-dependent)" +BW25113_2794__3prime queF__3prime 0 2919556 2919753 1 359 0.1111111111111111 198 22 "7-cyano-7-deazaguanine reductase (NADPH-dependent)" +BW25113_2795 ygdH 0 2919667 2921031 1 3253 0.12967032967032968 1365 177 "UPF0717 family protein" +BW25113_2795__5prime ygdH__5prime 0 2919469 2919666 1 411 0.08585858585858586 198 17 "UPF0717 family protein" +BW25113_2795__3prime ygdH__3prime 0 2921032 2921229 1 77 0.025252525252525252 198 5 "UPF0717 family protein" +BW25113_2796 sdaC 0 2921588 2922877 1 4283 0.15038759689922482 1290 194 "putative serine transporter" +BW25113_2796__5prime sdaC__5prime 0 2921390 2921587 1 68 0.045454545454545456 198 9 "putative serine transporter" +BW25113_2796__3prime sdaC__3prime 0 2922878 2923075 1 256 0.08585858585858586 198 17 "putative serine transporter" +BW25113_2797 sdaB 0 2922935 2924302 1 3238 0.11476608187134503 1368 157 "L-serine dehydratase 2" +BW25113_2797__5prime sdaB__5prime 0 2922737 2922934 1 400 0.1111111111111111 198 22 "L-serine dehydratase 2" +BW25113_2797__3prime sdaB__3prime 0 2924303 2924500 1 273 0.09090909090909091 198 18 "L-serine dehydratase 2" +BW25113_2798 ygdG 0 2924414 2925169 1 1231 0.06613756613756613 756 50 "Ssb-binding protein and misidentified as ExoIX" +BW25113_2798__5prime ygdG__5prime 0 2924216 2924413 1 408 0.09595959595959595 198 19 "Ssb-binding protein and misidentified as ExoIX" +BW25113_2798__3prime ygdG__3prime 0 2925170 2925367 1 543 0.12121212121212122 198 24 "Ssb-binding protein and misidentified as ExoIX" +2925175_2925205 2925175_2925205 0 2925176 2925205 1 0 0.0 30 0 "2925175_2925205" +2925175_2925205__5prime 2925175_2925205__5prime 0 2924978 2925175 1 149 0.05555555555555555 198 11 "2925175_2925205" +2925175_2925205__3prime 2925175_2925205__3prime 0 2925206 2925403 1 553 0.12626262626262627 198 25 "2925175_2925205" +BW25113_2799 fucO 0 2925224 2926372 -1 3565 0.13751087902523934 1149 158 "L-1 and 2-propanediol oxidoreductase" +BW25113_2799__5prime fucO__5prime 0 2926373 2926570 -1 294 0.08080808080808081 198 16 "L-1 and 2-propanediol oxidoreductase" +BW25113_2799__3prime fucO__3prime 0 2925026 2925223 -1 150 0.04040404040404041 198 8 "L-1 and 2-propanediol oxidoreductase" +BW25113_2800 fucA 0 2926400 2927047 -1 5161 0.2037037037037037 648 132 "L-fuculose-1-phosphate aldolase" +BW25113_2800__5prime fucA__5prime 0 2927048 2927245 -1 1576 0.13131313131313133 198 26 "L-fuculose-1-phosphate aldolase" +BW25113_2800__3prime fucA__3prime 0 2926202 2926399 -1 356 0.11616161616161616 198 23 "L-fuculose-1-phosphate aldolase" +BW25113_2801 fucP 0 2927594 2928910 1 7591 0.18982536066818528 1317 250 "L-fucose transporter" +BW25113_2801__5prime fucP__5prime 0 2927396 2927593 1 1173 0.2878787878787879 198 57 "L-fucose transporter" +BW25113_2801__3prime fucP__3prime 0 2928911 2929108 1 153 0.04040404040404041 198 8 "L-fucose transporter" +BW25113_2802 fucI 0 2928943 2930718 1 4282 0.10472972972972973 1776 186 "L-fucose isomerase" +BW25113_2802__5prime fucI__5prime 0 2928745 2928942 1 149 0.050505050505050504 198 10 "L-fucose isomerase" +BW25113_2802__3prime fucI__3prime 0 2930719 2930916 1 582 0.10101010101010101 198 20 "L-fucose isomerase" +2930784_2930808 2930784_2930808 0 2930785 2930808 1 18 0.125 24 3 "2930784_2930808" +2930784_2930808__5prime 2930784_2930808__5prime 0 2930587 2930784 1 989 0.18686868686868688 198 37 "2930784_2930808" +2930784_2930808__3prime 2930784_2930808__3prime 0 2930809 2931006 1 336 0.07575757575757576 198 15 "2930784_2930808" +BW25113_2803 fucK 0 2930797 2932245 1 3861 0.10766045548654245 1449 156 "L-fuculokinase" +BW25113_2803__5prime fucK__5prime 0 2930599 2930796 1 950 0.18181818181818182 198 36 "L-fuculokinase" +BW25113_2803__3prime fucK__3prime 0 2932246 2932443 1 287 0.10101010101010101 198 20 "L-fuculokinase" +BW25113_2804 fucU 0 2932247 2932669 1 889 0.1016548463356974 423 43 "L-fucose mutarotase" +BW25113_2804__5prime fucU__5prime 0 2932049 2932246 1 557 0.08080808080808081 198 16 "L-fucose mutarotase" +BW25113_2804__3prime fucU__3prime 0 2932670 2932867 1 726 0.1414141414141414 198 28 "L-fucose mutarotase" +BW25113_2805 fucR 0 2932727 2933458 1 1710 0.10655737704918032 732 78 "l-fucose operon activator" +BW25113_2805__5prime fucR__5prime 0 2932529 2932726 1 449 0.10606060606060606 198 21 "l-fucose operon activator" +BW25113_2805__3prime fucR__3prime 0 2933459 2933656 1 260 0.09090909090909091 198 18 "l-fucose operon activator" +BW25113_2806 rlmM 0 2933502 2934602 -1 2471 0.11080835603996367 1101 122 '"23S rRNA C2498 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_2806__5prime rlmM__5prime 0 2934603 2934800 -1 1242 0.17676767676767677 198 35 '"23S rRNA C2498 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_2806__3prime rlmM__3prime 0 2933304 2933501 -1 164 0.08080808080808081 198 16 '"23S rRNA C2498 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_2807 ygdD 0 2934595 2934990 -1 1827 0.15151515151515152 396 60 "UPF0382 family inner membrane protein" +BW25113_2807__5prime ygdD__5prime 0 2934991 2935188 -1 285 0.06060606060606061 198 12 "UPF0382 family inner membrane protein" +BW25113_2807__3prime ygdD__3prime 0 2934397 2934594 -1 153 0.0707070707070707 198 14 "UPF0382 family inner membrane protein" +BW25113_2808 gcvA 0 2935009 2935926 -1 1472 0.07298474945533769 918 67 "glycine cleavage system transcriptional activator; autorepressor" +BW25113_2808__5prime gcvA__5prime 0 2935927 2936124 -1 198 0.06060606060606061 198 12 "glycine cleavage system transcriptional activator; autorepressor" +BW25113_2808__3prime gcvA__3prime 0 2934811 2935008 -1 666 0.12626262626262627 198 25 "glycine cleavage system transcriptional activator; autorepressor" +BW25113_4443 gcvB 0 2936055 2936260 1 491 0.14563106796116504 206 30 "sRNA antisense regulator represses oppA and dppA and gltI and livJ expression and Hfq-dependent" +BW25113_4443__5prime gcvB__5prime 0 2935857 2936054 1 193 0.07575757575757576 198 15 "sRNA antisense regulator represses oppA and dppA and gltI and livJ expression and Hfq-dependent" +BW25113_4443__3prime gcvB__3prime 0 2936261 2936458 1 1127 0.1717171717171717 198 34 "sRNA antisense regulator represses oppA and dppA and gltI and livJ expression and Hfq-dependent" +BW25113_2809 ygdI 0 2936277 2936504 -1 1312 0.15350877192982457 228 35 "DUF903 family verified lipoprotein" +BW25113_2809__5prime ygdI__5prime 0 2936505 2936702 -1 676 0.12626262626262627 198 25 "DUF903 family verified lipoprotein" +BW25113_2809__3prime ygdI__3prime 0 2936079 2936276 -1 479 0.1414141414141414 198 28 "DUF903 family verified lipoprotein" +BW25113_2810 csdA 0 2936696 2937901 1 3297 0.13349917081260365 1206 161 "cysteine sulfinate desulfinase" +BW25113_2810__5prime csdA__5prime 0 2936498 2936695 1 676 0.12626262626262627 198 25 "cysteine sulfinate desulfinase" +BW25113_2810__3prime csdA__3prime 0 2937902 2938099 1 350 0.10606060606060606 198 21 "cysteine sulfinate desulfinase" +BW25113_2811 csdE 0 2937901 2938344 1 1233 0.11711711711711711 444 52 "CsdA-binding activator; Fe-S protein" +BW25113_2811__5prime csdE__5prime 0 2937703 2937900 1 918 0.17676767676767677 198 35 "CsdA-binding activator; Fe-S protein" +BW25113_2811__3prime csdE__3prime 0 2938345 2938542 1 356 0.10606060606060606 198 21 "CsdA-binding activator; Fe-S protein" +2938352_2938386 2938352_2938386 0 2938353 2938386 1 213 0.2647058823529412 34 9 "2938352_2938386" +2938352_2938386__5prime 2938352_2938386__5prime 0 2938155 2938352 1 454 0.13131313131313133 198 26 "2938352_2938386" +2938352_2938386__3prime 2938352_2938386__3prime 0 2938387 2938584 1 327 0.08585858585858586 198 17 "2938352_2938386" +BW25113_2812 tcdA 0 2938395 2939201 -1 2094 0.12019826517967781 807 97 "tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA" +BW25113_2812__5prime tcdA__5prime 0 2939202 2939399 -1 456 0.12626262626262627 198 25 "tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA" +BW25113_2812__3prime tcdA__3prime 0 2938197 2938394 -1 628 0.1717171717171717 198 34 "tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA" +2939254_2939351 2939254_2939351 0 2939255 2939351 1 240 0.14432989690721648 97 14 "2939254_2939351" +2939254_2939351__5prime 2939254_2939351__5prime 0 2939057 2939254 1 251 0.07575757575757576 198 15 "2939254_2939351" +2939254_2939351__3prime 2939254_2939351__3prime 0 2939352 2939549 1 614 0.1717171717171717 198 34 "2939254_2939351" +BW25113_2813 mltA 0 2939440 2940537 -1 2815 0.1111111111111111 1098 122 "membrane-bound lytic murein transglycosylase A" +BW25113_2813__5prime mltA__5prime 0 2940538 2940735 -1 150 0.0707070707070707 198 14 "membrane-bound lytic murein transglycosylase A" +BW25113_2813__3prime mltA__3prime 0 2939242 2939439 -1 456 0.13636363636363635 198 27 "membrane-bound lytic murein transglycosylase A" +BW25113_2814 metZ 0 2940746 2940822 1 85 0.09090909090909091 77 7 "tRNA-Met" +BW25113_2814__5prime metZ__5prime 0 2940548 2940745 1 150 0.0707070707070707 198 14 "tRNA-Met" +BW25113_2814__3prime metZ__3prime 0 2940823 2941020 1 492 0.1717171717171717 198 34 "tRNA-Met" +BW25113_2815 metW 0 2940856 2940932 1 199 0.16883116883116883 77 13 "tRNA-Met" +BW25113_2815__5prime metW__5prime 0 2940658 2940855 1 281 0.11616161616161616 198 23 "tRNA-Met" +BW25113_2815__3prime metW__3prime 0 2940933 2941130 1 335 0.11616161616161616 198 23 "tRNA-Met" +BW25113_2816 metV 0 2940966 2941042 1 177 0.12987012987012986 77 10 "tRNA-Met" +BW25113_2816__5prime metV__5prime 0 2940768 2940965 1 370 0.13636363636363635 198 27 "tRNA-Met" +BW25113_2816__3prime metV__3prime 0 2941043 2941240 1 201 0.06565656565656566 198 13 "tRNA-Met" +BW25113_2817 amiC 0 2941116 2942369 -1 3751 0.11642743221690591 1254 146 "N-acetylmuramoyl-L-alanine amidase" +BW25113_2817__5prime amiC__5prime 0 2942370 2942567 -1 42 0.015151515151515152 198 3 "N-acetylmuramoyl-L-alanine amidase" +BW25113_2817__3prime amiC__3prime 0 2940918 2941115 -1 288 0.10101010101010101 198 20 "N-acetylmuramoyl-L-alanine amidase" +BW25113_2818 argA 0 2942601 2943932 1 3124 0.10810810810810811 1332 144 "fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase" +BW25113_2818__5prime argA__5prime 0 2942403 2942600 1 0 0.0 198 0 "fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase" +BW25113_2818__3prime argA__3prime 0 2943933 2944130 1 784 0.12626262626262627 198 25 "fused acetylglutamate kinase homolog (inactive)/amino acid N-acetyltransferase" +2943971_2943985 2943971_2943985 0 2943972 2943985 1 12 0.07142857142857142 14 1 "2943971_2943985" +2943971_2943985__5prime 2943971_2943985__5prime 0 2943774 2943971 1 452 0.09090909090909091 198 18 "2943971_2943985" +2943971_2943985__3prime 2943971_2943985__3prime 0 2943986 2944183 1 623 0.11616161616161616 198 23 "2943971_2943985" +BW25113_2819 recD 0 2943994 2945820 -1 4157 0.10782703886152162 1827 197 "exonuclease V (RecBCD complex) and alpha chain" +BW25113_2819__5prime recD__5prime 0 2945821 2946018 -1 367 0.07575757575757576 198 15 "exonuclease V (RecBCD complex) and alpha chain" +BW25113_2819__3prime recD__3prime 0 2943796 2943993 -1 457 0.09090909090909091 198 18 "exonuclease V (RecBCD complex) and alpha chain" +BW25113_2820 recB 0 2945820 2949362 -1 2344 0.039514535704205475 3543 140 "exonuclease V (RecBCD complex) and beta subunit" +BW25113_2820__5prime recB__5prime 0 2949363 2949560 -1 264 0.08585858585858586 198 17 "exonuclease V (RecBCD complex) and beta subunit" +BW25113_2820__3prime recB__3prime 0 2945622 2945819 -1 350 0.07575757575757576 198 15 "exonuclease V (RecBCD complex) and beta subunit" +BW25113_2821 ptrA 0 2949355 2952243 -1 7077 0.10834198684665974 2889 313 "protease III" +BW25113_2821__5prime ptrA__5prime 0 2952244 2952441 -1 285 0.08585858585858586 198 17 "protease III" +BW25113_2821__3prime ptrA__3prime 0 2949157 2949354 -1 182 0.050505050505050504 198 10 "protease III" +BW25113_2822 recC 0 2952419 2955787 -1 2355 0.05313149302463639 3369 179 "exonuclease V (RecBCD complex) and gamma chain" +BW25113_2822__5prime recC__5prime 0 2955788 2955985 -1 437 0.08080808080808081 198 16 "exonuclease V (RecBCD complex) and gamma chain" +BW25113_2822__3prime recC__3prime 0 2952221 2952418 -1 256 0.07575757575757576 198 15 "exonuclease V (RecBCD complex) and gamma chain" +BW25113_2823 ppdC 0 2955800 2956123 -1 874 0.10802469135802469 324 35 "putative prepilin peptidase-dependent protein" +BW25113_2823__5prime ppdC__5prime 0 2956124 2956321 -1 250 0.09595959595959595 198 19 "putative prepilin peptidase-dependent protein" +BW25113_2823__3prime ppdC__3prime 0 2955602 2955799 -1 84 0.045454545454545456 198 9 "putative prepilin peptidase-dependent protein" +BW25113_2824 ygdB 0 2956108 2956515 -1 493 0.0784313725490196 408 32 "DUF2509 family protein" +BW25113_2824__5prime ygdB__5prime 0 2956516 2956713 -1 474 0.08585858585858586 198 17 "DUF2509 family protein" +BW25113_2824__3prime ygdB__3prime 0 2955910 2956107 -1 587 0.13131313131313133 198 26 "DUF2509 family protein" +BW25113_2825 ppdB 0 2956512 2957075 -1 1764 0.14361702127659576 564 81 "putative prepilin peptidase-dependent protein" +BW25113_2825__5prime ppdB__5prime 0 2957076 2957273 -1 288 0.1111111111111111 198 22 "putative prepilin peptidase-dependent protein" +BW25113_2825__3prime ppdB__3prime 0 2956314 2956511 -1 249 0.0707070707070707 198 14 "putative prepilin peptidase-dependent protein" +BW25113_2826 ppdA 0 2957066 2957536 -1 2163 0.1464968152866242 471 69 "putative prepilin peptidase-dependent protein" +BW25113_2826__5prime ppdA__5prime 0 2957537 2957734 -1 73 0.020202020202020204 198 4 "putative prepilin peptidase-dependent protein" +BW25113_2826__3prime ppdA__3prime 0 2956868 2957065 -1 458 0.12121212121212122 198 24 "putative prepilin peptidase-dependent protein" +BW25113_2827 thyA 0 2957720 2958514 -1 123 0.012578616352201259 795 10 "thymidylate synthetase" +BW25113_2827__5prime thyA__5prime 0 2958515 2958712 -1 58 0.03535353535353535 198 7 "thymidylate synthetase" +BW25113_2827__3prime thyA__3prime 0 2957522 2957719 -1 73 0.020202020202020204 198 4 "thymidylate synthetase" +BW25113_2828 lgt 0 2958521 2959396 -1 46 0.00684931506849315 876 6 "phosphatidylglycerol-prolipoprotein diacylglyceryl transferase" +BW25113_2828__5prime lgt__5prime 0 2959397 2959594 -1 542 0.07575757575757576 198 15 "phosphatidylglycerol-prolipoprotein diacylglyceryl transferase" +BW25113_2828__3prime lgt__3prime 0 2958323 2958520 -1 28 0.015151515151515152 198 3 "phosphatidylglycerol-prolipoprotein diacylglyceryl transferase" +BW25113_2829 ptsP 0 2959547 2961793 -1 6014 0.11927013796172675 2247 268 "fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein" +BW25113_2829__5prime ptsP__5prime 0 2961794 2961991 -1 410 0.0707070707070707 198 14 "fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein" +BW25113_2829__3prime ptsP__3prime 0 2959349 2959546 -1 201 0.03535353535353535 198 7 "fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein" +BW25113_2830 rppH 0 2961806 2962336 -1 450 0.035781544256120526 531 19 "RNA pyrophosphohydrolase" +BW25113_2830__5prime rppH__5prime 0 2962337 2962534 -1 296 0.09595959595959595 198 19 "RNA pyrophosphohydrolase" +BW25113_2830__3prime rppH__3prime 0 2961608 2961805 -1 467 0.12626262626262627 198 25 "RNA pyrophosphohydrolase" +BW25113_2831 mutH 0 2963021 2963710 1 2124 0.10869565217391304 690 75 "methyl-directed mismatch repair protein" +BW25113_2831__5prime mutH__5prime 0 2962823 2963020 1 206 0.0707070707070707 198 14 "methyl-directed mismatch repair protein" +BW25113_2831__3prime mutH__3prime 0 2963711 2963908 1 512 0.1717171717171717 198 34 "methyl-directed mismatch repair protein" +BW25113_2832 ygdQ 0 2963779 2964492 1 1868 0.1400560224089636 714 100 "UPF0053 family inner membrane protein" +BW25113_2832__5prime ygdQ__5prime 0 2963581 2963778 1 456 0.09090909090909091 198 18 "UPF0053 family inner membrane protein" +BW25113_2832__3prime ygdQ__3prime 0 2964493 2964690 1 697 0.18181818181818182 198 36 "UPF0053 family inner membrane protein" +BW25113_2833 ygdR 0 2964630 2964848 1 722 0.1552511415525114 219 34 "DUF903 family verified lipoprotein" +BW25113_2833__5prime ygdR__5prime 0 2964432 2964629 1 745 0.21717171717171718 198 43 "DUF903 family verified lipoprotein" +BW25113_2833__3prime ygdR__3prime 0 2964849 2965046 1 762 0.18686868686868688 198 37 "DUF903 family verified lipoprotein" +BW25113_2834 tas 0 2964956 2965996 1 3582 0.12680115273775217 1041 132 "putative NADP(H)-dependent aldo-keto reductase" +BW25113_2834__5prime tas__5prime 0 2964758 2964955 1 629 0.15656565656565657 198 31 "putative NADP(H)-dependent aldo-keto reductase" +BW25113_2834__3prime tas__3prime 0 2965997 2966194 1 304 0.05555555555555555 198 11 "putative NADP(H)-dependent aldo-keto reductase" +BW25113_2835 lplT 0 2966028 2967221 -1 3185 0.12144053601340034 1194 145 "lysophospholipid transporter" +BW25113_2835__5prime lplT__5prime 0 2967222 2967419 -1 355 0.0707070707070707 198 14 "lysophospholipid transporter" +BW25113_2835__3prime lplT__3prime 0 2965830 2966027 -1 600 0.09090909090909091 198 18 "lysophospholipid transporter" +BW25113_2836 aas 0 2967214 2969373 -1 6352 0.11666666666666667 2160 252 "fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase" +BW25113_2836__5prime aas__5prime 0 2969374 2969571 -1 353 0.12626262626262627 198 25 "fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase" +BW25113_2836__3prime aas__3prime 0 2967016 2967213 -1 925 0.12626262626262627 198 25 "fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase" +BW25113_4444 omrA 0 2969461 2969548 -1 191 0.1590909090909091 88 14 "sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ and Hfq-dependent" +BW25113_4444__5prime omrA__5prime 0 2969549 2969746 -1 883 0.15656565656565657 198 31 "sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ and Hfq-dependent" +BW25113_4444__3prime omrA__3prime 0 2969263 2969460 -1 381 0.1111111111111111 198 22 "sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ and Hfq-dependent" +BW25113_4445 omrB 0 2969663 2969744 -1 494 0.2073170731707317 82 17 "sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ and Hfq-dependent" +BW25113_4445__5prime omrB__5prime 0 2969745 2969942 -1 327 0.06060606060606061 198 12 "sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ and Hfq-dependent" +BW25113_4445__3prime omrB__3prime 0 2969465 2969662 -1 580 0.1414141414141414 198 28 "sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ and Hfq-dependent" +BW25113_2837 galR 0 2969958 2970989 1 3230 0.1385658914728682 1032 143 "galactose-inducible d-galactose regulon transcriptional repressor; autorepressor" +BW25113_2837__5prime galR__5prime 0 2969760 2969957 1 338 0.06565656565656566 198 13 "galactose-inducible d-galactose regulon transcriptional repressor; autorepressor" +BW25113_2837__3prime galR__3prime 0 2970990 2971187 1 409 0.12121212121212122 198 24 "galactose-inducible d-galactose regulon transcriptional repressor; autorepressor" +BW25113_2838 lysA 0 2970996 2972258 -1 3155 0.09817893903404593 1263 124 "diaminopimelate decarboxylase and PLP-binding" +BW25113_2838__5prime lysA__5prime 0 2972259 2972456 -1 207 0.05555555555555555 198 11 "diaminopimelate decarboxylase and PLP-binding" +BW25113_2838__3prime lysA__3prime 0 2970798 2970995 -1 477 0.09090909090909091 198 18 "diaminopimelate decarboxylase and PLP-binding" +BW25113_2839 lysR 0 2972380 2973315 1 3055 0.13141025641025642 936 123 "transcriptional activator of lysA; autorepressor" +BW25113_2839__5prime lysR__5prime 0 2972182 2972379 1 320 0.05555555555555555 198 11 "transcriptional activator of lysA; autorepressor" +BW25113_2839__3prime lysR__3prime 0 2973316 2973513 1 164 0.0707070707070707 198 14 "transcriptional activator of lysA; autorepressor" +BW25113_2840 ygeA 0 2973302 2973994 -1 1704 0.113997113997114 693 79 "Asp/Glu_racemase family protein" +BW25113_2840__5prime ygeA__5prime 0 2973995 2974192 -1 714 0.10606060606060606 198 21 "Asp/Glu_racemase family protein" +BW25113_2840__3prime ygeA__3prime 0 2973104 2973301 -1 928 0.1717171717171717 198 34 "Asp/Glu_racemase family protein" +2974091_2974114 2974091_2974114 0 2974092 2974114 1 267 0.21739130434782608 23 5 "2974091_2974114" +2974091_2974114__5prime 2974091_2974114__5prime 0 2973894 2974091 1 647 0.12121212121212122 198 24 "2974091_2974114" +2974091_2974114__3prime 2974091_2974114__3prime 0 2974115 2974312 1 1002 0.18181818181818182 198 36 "2974091_2974114" +BW25113_2841 araE 0 2974123 2975541 -1 6891 0.16701902748414377 1419 237 "arabinose transporter" +BW25113_2841__5prime araE__5prime 0 2975542 2975739 -1 1838 0.12626262626262627 198 25 "arabinose transporter" +BW25113_2841__3prime araE__3prime 0 2973925 2974122 -1 799 0.12121212121212122 198 24 "arabinose transporter" +BW25113_2842 kduD 0 2975856 2976617 -1 4435 0.21128608923884515 762 161 "hexuronate dehydrogenase; hexuronate utilization in high osmolarity" +BW25113_2842__5prime kduD__5prime 0 2976618 2976815 -1 357 0.10101010101010101 198 20 "hexuronate dehydrogenase; hexuronate utilization in high osmolarity" +BW25113_2842__3prime kduD__3prime 0 2975658 2975855 -1 317 0.06565656565656566 198 13 "hexuronate dehydrogenase; hexuronate utilization in high osmolarity" +BW25113_2843 kduI 0 2976647 2977483 -1 6302 0.18996415770609318 837 159 "hexuronate isomerase; hexuronate utilization in high osmolarity" +BW25113_2843__5prime kduI__5prime 0 2977484 2977681 -1 387 0.09090909090909091 198 18 "hexuronate isomerase; hexuronate utilization in high osmolarity" +BW25113_2843__3prime kduI__3prime 0 2976449 2976646 -1 490 0.15151515151515152 198 30 "hexuronate isomerase; hexuronate utilization in high osmolarity" +BW25113_2844 yqeF 0 2977770 2978951 -1 4496 0.14213197969543148 1182 168 "short chain acyltransferase" +BW25113_2844__5prime yqeF__5prime 0 2978952 2979149 -1 301 0.09595959595959595 198 19 "short chain acyltransferase" +BW25113_2844__3prime yqeF__3prime 0 2977572 2977769 -1 204 0.0707070707070707 198 14 "short chain acyltransferase" +BW25113_2845 yqeG 0 2979206 2980435 1 14107 0.34227642276422765 1230 421 "putative transporter" +BW25113_2845__5prime yqeG__5prime 0 2979008 2979205 1 195 0.08080808080808081 198 16 "putative transporter" +BW25113_2845__3prime yqeG__3prime 0 2980436 2980633 1 653 0.18181818181818182 198 36 "putative transporter" +BW25113_2846 yqeH 0 2980895 2981527 1 3752 0.21958925750394945 633 139 "putative LuxR family transcriptional regulator" +BW25113_2846__5prime yqeH__5prime 0 2980697 2980894 1 885 0.1414141414141414 198 28 "putative LuxR family transcriptional regulator" +BW25113_2846__3prime yqeH__3prime 0 2981528 2981725 1 422 0.12121212121212122 198 24 "putative LuxR family transcriptional regulator" +BW25113_2847 yqeI 0 2981861 2982670 1 6950 0.28271604938271605 810 229 "putative transcriptional regulator" +BW25113_2847__5prime yqeI__5prime 0 2981663 2981860 1 309 0.0707070707070707 198 14 "putative transcriptional regulator" +BW25113_2847__3prime yqeI__3prime 0 2982671 2982868 1 280 0.08080808080808081 198 16 "putative transcriptional regulator" +BW25113_2848 yqeJ 0 2982663 2983145 1 1531 0.16149068322981366 483 78 "uncharacterized protein" +BW25113_2848__5prime yqeJ__5prime 0 2982465 2982662 1 1074 0.20707070707070707 198 41 "uncharacterized protein" +BW25113_2848__3prime yqeJ__3prime 0 2983146 2983343 1 939 0.16666666666666666 198 33 "uncharacterized protein" +BW25113_4683 yqeL 0 2983178 2983258 -1 410 0.08641975308641975 81 7 "uncharacterized protein" +BW25113_4683__5prime yqeL__5prime 0 2983259 2983456 -1 1203 0.23232323232323232 198 46 "uncharacterized protein" +BW25113_4683__3prime yqeL__3prime 0 2982980 2983177 -1 438 0.15151515151515152 198 30 "uncharacterized protein" +BW25113_2849 yqeK 0 2983294 2983719 -1 1484 0.14788732394366197 426 63 "uncharacterized protein" +BW25113_2849__5prime yqeK__5prime 0 2983720 2983917 -1 796 0.17676767676767677 198 35 "uncharacterized protein" +BW25113_2849__3prime yqeK__3prime 0 2983096 2983293 -1 685 0.13636363636363635 198 27 "uncharacterized protein" +BW25113_2850 ygeF 0 2983913 2984402 1 669 0.0836734693877551 490 41 "2983912_2984402" +BW25113_2850__5prime ygeF__5prime 0 2983715 2983912 1 828 0.1919191919191919 198 38 "2983912_2984402" +BW25113_2850__3prime ygeF__3prime 0 2984403 2984600 1 33 0.010101010101010102 198 2 "2983912_2984402" +BW25113_2851 ygeG 0 2984627 2985118 1 1540 0.15447154471544716 492 76 "SycD-like chaperone family TPR-repeat-containing protein" +BW25113_2851__5prime ygeG__5prime 0 2984429 2984626 1 21 0.005050505050505051 198 1 "SycD-like chaperone family TPR-repeat-containing protein" +BW25113_2851__3prime ygeG__3prime 0 2985119 2985316 1 497 0.12121212121212122 198 24 "SycD-like chaperone family TPR-repeat-containing protein" +BW25113_2852 ygeH 0 2985453 2986829 1 6431 0.19753086419753085 1377 272 "putative transcriptional regulator" +BW25113_2852__5prime ygeH__5prime 0 2985255 2985452 1 118 0.050505050505050504 198 10 "putative transcriptional regulator" +BW25113_2852__3prime ygeH__3prime 0 2986830 2987027 1 231 0.0707070707070707 198 14 "putative transcriptional regulator" +BW25113_2853 ygeI 0 2986997 2987215 1 916 0.1917808219178082 219 42 "uncharacterized protein" +BW25113_2853__5prime ygeI__5prime 0 2986799 2986996 1 196 0.06565656565656566 198 13 "uncharacterized protein" +BW25113_2853__3prime ygeI__3prime 0 2987216 2987413 1 136 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_2854 pbl 0 2987298 2987800 1 877 0.1073558648111332 503 54 "2987297_2987800" +BW25113_2854__5prime pbl__5prime 0 2987100 2987297 1 596 0.16666666666666666 198 33 "2987297_2987800" +BW25113_2854__3prime pbl__3prime 0 2987801 2987998 1 1028 0.25252525252525254 198 50 "2987297_2987800" +BW25113_2856 ygeK 0 2987819 2988451 -1 2136 0.1674565560821485 633 106 "2987818_2988451" +BW25113_2856__5prime ygeK__5prime 0 2988452 2988649 -1 13 0.005050505050505051 198 1 "2987818_2988451" +BW25113_2856__3prime ygeK__3prime 0 2987621 2987818 -1 399 0.11616161616161616 198 23 "2987818_2988451" +BW25113_2858 ygeN 0 2988673 2989379 -1 624 0.0594059405940594 707 42 "2988672_2989379" +BW25113_2858__5prime ygeN__5prime 0 2989380 2989577 -1 1084 0.21717171717171718 198 43 "2988672_2989379" +BW25113_2858__3prime ygeN__3prime 0 2988475 2988672 -1 25 0.010101010101010102 198 2 "2988672_2989379" +BW25113_2859 ygeO 0 2989321 2989719 -1 1448 0.15538847117794485 399 62 "2989320_2989719" +BW25113_2859__5prime ygeO__5prime 0 2989720 2989917 -1 1570 0.42424242424242425 198 84 "2989320_2989719" +BW25113_2859__3prime ygeO__3prime 0 2989123 2989320 -1 178 0.05555555555555555 198 11 "2989320_2989719" +2989719_2991050 2989719_2991050 0 2989720 2991050 -1 5402 0.2539444027047333 1331 338 "2989719_2991050" +2989719_2991050__5prime 2989719_2991050__5prime 0 2991051 2991248 -1 965 0.29292929292929293 198 58 "2989719_2991050" +2989719_2991050__3prime 2989719_2991050__3prime 0 2989522 2989719 -1 701 0.16666666666666666 198 33 "2989719_2991050" +BW25113_2860 insD1 0 2989731 2990636 -1 3342 0.25055187637969095 906 227 "IS2 transposase TnpB" +BW25113_2860__5prime insD1__5prime 0 2990637 2990834 -1 356 0.13131313131313133 198 26 "IS2 transposase TnpB" +BW25113_2860__3prime insD1__3prime 0 2989533 2989730 -1 708 0.1717171717171717 198 34 "IS2 transposase TnpB" +BW25113_2861 insC1 0 2990594 2990959 -1 1790 0.2896174863387978 366 106 "IS2 repressor TnpA" +BW25113_2861__5prime insC1__5prime 0 2990960 2991157 -1 663 0.13131313131313133 198 26 "IS2 repressor TnpA" +BW25113_2861__3prime insC1__3prime 0 2990396 2990593 -1 407 0.23232323232323232 198 46 "IS2 repressor TnpA" +BW25113_2863 ygeQ 0 2991051 2992187 -1 12474 0.33773087071240104 1137 384 "2991050_2992187" +BW25113_2863__5prime ygeQ__5prime 0 2992188 2992385 -1 330 0.045454545454545456 198 9 "2991050_2992187" +BW25113_2863__3prime ygeQ__3prime 0 2990853 2991050 -1 1535 0.3686868686868687 198 73 "2991050_2992187" +BW25113_2864 glyU 0 2992343 2992416 -1 410 0.1891891891891892 74 14 "tRNA-Gly" +BW25113_2864__5prime glyU__5prime 0 2992417 2992614 -1 672 0.09595959595959595 198 19 "tRNA-Gly" +BW25113_2864__3prime glyU__3prime 0 2992145 2992342 -1 182 0.04040404040404041 198 8 "tRNA-Gly" +BW25113_2865 ygeR 0 2992495 2993250 -1 3100 0.1931216931216931 756 146 "LysM domain-containing M23 family putative peptidase; septation lipoprotein" +BW25113_2865__5prime ygeR__5prime 0 2993251 2993448 -1 898 0.22727272727272727 198 45 "LysM domain-containing M23 family putative peptidase; septation lipoprotein" +BW25113_2865__3prime ygeR__3prime 0 2992297 2992494 -1 835 0.16666666666666666 198 33 "LysM domain-containing M23 family putative peptidase; septation lipoprotein" +BW25113_2866 xdhA 0 2993704 2995962 1 5440 0.1102257636122178 2259 249 "xanthine dehydrogenase and molybdenum binding subunit" +BW25113_2866__5prime xdhA__5prime 0 2993506 2993703 1 1474 0.23232323232323232 198 46 "xanthine dehydrogenase and molybdenum binding subunit" +BW25113_2866__3prime xdhA__3prime 0 2995963 2996160 1 577 0.1111111111111111 198 22 "xanthine dehydrogenase and molybdenum binding subunit" +BW25113_2867 xdhB 0 2995973 2996851 1 1892 0.08532423208191127 879 75 "xanthine dehydrogenase and FAD-binding subunit" +BW25113_2867__5prime xdhB__5prime 0 2995775 2995972 1 611 0.16161616161616163 198 32 "xanthine dehydrogenase and FAD-binding subunit" +BW25113_2867__3prime xdhB__3prime 0 2996852 2997049 1 622 0.16666666666666666 198 33 "xanthine dehydrogenase and FAD-binding subunit" +BW25113_2868 xdhC 0 2996848 2997327 1 1470 0.13125 480 63 "xanthine dehydrogenase and Fe-S binding subunit" +BW25113_2868__5prime xdhC__5prime 0 2996650 2996847 1 437 0.08585858585858586 198 17 "xanthine dehydrogenase and Fe-S binding subunit" +BW25113_2868__3prime xdhC__3prime 0 2997328 2997525 1 789 0.16666666666666666 198 33 "xanthine dehydrogenase and Fe-S binding subunit" +BW25113_2869 ygeV 0 2997367 2999145 -1 15961 0.25238898257448006 1779 449 "putative sigma-54-interacting transcriptional activator" +BW25113_2869__5prime ygeV__5prime 0 2999146 2999343 -1 1389 0.20707070707070707 198 41 "putative sigma-54-interacting transcriptional activator" +BW25113_2869__3prime ygeV__3prime 0 2997169 2997366 -1 815 0.13636363636363635 198 27 "putative sigma-54-interacting transcriptional activator" +BW25113_2870 ygeW 0 2999621 3000811 1 9651 0.23425692695214106 1191 279 "putative carbamoyltransferase" +BW25113_2870__5prime ygeW__5prime 0 2999423 2999620 1 1369 0.24242424242424243 198 48 "putative carbamoyltransferase" +BW25113_2870__3prime ygeW__3prime 0 3000812 3001009 1 236 0.07575757575757576 198 15 "putative carbamoyltransferase" +BW25113_2870 ygeW 0 3000117 3000293 1 1234 0.2824858757062147 177 50 "3000116_3000293" +BW25113_2870__5prime ygeW__5prime 0 2999919 3000116 1 1690 0.23232323232323232 198 46 "3000116_3000293" +BW25113_2870__3prime ygeW__3prime 0 3000294 3000491 1 374 0.08080808080808081 198 16 "3000116_3000293" +BW25113_2871 ygeX 0 3000869 3002065 1 2110 0.0960735171261487 1197 115 "2 and 3-diaminopropionate ammonia lyase and PLP-dependent" +BW25113_2871__5prime ygeX__5prime 0 3000671 3000868 1 788 0.17676767676767677 198 35 "2 and 3-diaminopropionate ammonia lyase and PLP-dependent" +BW25113_2871__3prime ygeX__3prime 0 3002066 3002263 1 305 0.1111111111111111 198 22 "2 and 3-diaminopropionate ammonia lyase and PLP-dependent" +BW25113_2872 ygeY 0 3002123 3003334 1 2884 0.1188118811881188 1212 144 "putative peptidase" +BW25113_2872__5prime ygeY__5prime 0 3001925 3002122 1 442 0.11616161616161616 198 23 "putative peptidase" +BW25113_2872__3prime ygeY__3prime 0 3003335 3003532 1 128 0.020202020202020204 198 4 "putative peptidase" +BW25113_2873 hyuA 0 3003387 3004772 1 2723 0.10101010101010101 1386 140 "D-stereospecific phenylhydantoinase" +BW25113_2873__5prime hyuA__5prime 0 3003189 3003386 1 287 0.09595959595959595 198 19 "D-stereospecific phenylhydantoinase" +BW25113_2873__3prime hyuA__3prime 0 3004773 3004970 1 245 0.08080808080808081 198 16 "D-stereospecific phenylhydantoinase" +BW25113_2874 yqeA 0 3004820 3005752 1 2880 0.12218649517684887 933 114 "putative amino acid kinase" +BW25113_2874__5prime yqeA__5prime 0 3004622 3004819 1 543 0.11616161616161616 198 23 "putative amino acid kinase" +BW25113_2874__3prime yqeA__3prime 0 3005753 3005950 1 356 0.08585858585858586 198 17 "putative amino acid kinase" +3005759_3005963 3005759_3005963 0 3005760 3005963 1 744 0.09313725490196079 204 19 "3005759_3005963" +3005759_3005963__5prime 3005759_3005963__5prime 0 3005562 3005759 1 501 0.10101010101010101 198 20 "3005759_3005963" +3005759_3005963__3prime 3005759_3005963__3prime 0 3005964 3006161 1 142 0.050505050505050504 198 10 "3005759_3005963" +BW25113_2875 yqeB 0 3005973 3007598 -1 3570 0.11193111931119311 1626 182 "XdhC-CoxI family protein with NAD(P)-binding Rossman fold" +BW25113_2875__5prime yqeB__5prime 0 3007599 3007796 -1 559 0.13131313131313133 198 26 "XdhC-CoxI family protein with NAD(P)-binding Rossman fold" +BW25113_2875__3prime yqeB__3prime 0 3005775 3005972 -1 682 0.07575757575757576 198 15 "XdhC-CoxI family protein with NAD(P)-binding Rossman fold" +BW25113_2876 yqeC 0 3007646 3008416 -1 3207 0.17250324254215305 771 133 "putative selenium-dependent hydroxylase accessory protein" +BW25113_2876__5prime yqeC__5prime 0 3008417 3008614 -1 1883 0.4292929292929293 198 85 "putative selenium-dependent hydroxylase accessory protein" +BW25113_2876__3prime yqeC__3prime 0 3007448 3007645 -1 400 0.08585858585858586 198 17 "putative selenium-dependent hydroxylase accessory protein" +BW25113_2877 mocA 0 3008519 3009097 1 6192 0.4006908462867012 579 232 "CTP:molybdopterin cytidylyltransferase" +BW25113_2877__5prime mocA__5prime 0 3008321 3008518 1 2020 0.398989898989899 198 79 "CTP:molybdopterin cytidylyltransferase" +BW25113_2877__3prime mocA__3prime 0 3009098 3009295 1 174 0.03535353535353535 198 7 "CTP:molybdopterin cytidylyltransferase" +BW25113_2878 ygfK 0 3009419 3012517 1 11427 0.12810584059373992 3099 397 "putative Fe-S subunit oxidoreductase subunit" +BW25113_2878__5prime ygfK__5prime 0 3009221 3009418 1 2902 0.3686868686868687 198 73 "putative Fe-S subunit oxidoreductase subunit" +BW25113_2878__3prime ygfK__3prime 0 3012518 3012715 1 494 0.10606060606060606 198 21 "putative Fe-S subunit oxidoreductase subunit" +BW25113_2879 ssnA 0 3012520 3013848 1 2456 0.09781790820165538 1329 130 "putative chlorohydrolase/aminohydrolase" +BW25113_2879__5prime ssnA__5prime 0 3012322 3012519 1 271 0.10606060606060606 198 21 "putative chlorohydrolase/aminohydrolase" +BW25113_2879__3prime ssnA__3prime 0 3013849 3014046 1 671 0.12626262626262627 198 25 "putative chlorohydrolase/aminohydrolase" +BW25113_2880 ygfM 0 3013899 3014678 1 2470 0.11538461538461539 780 90 "putative oxidoreductase" +BW25113_2880__5prime ygfM__5prime 0 3013701 3013898 1 408 0.09090909090909091 198 18 "putative oxidoreductase" +BW25113_2880__3prime ygfM__3prime 0 3014679 3014876 1 532 0.13131313131313133 198 26 "putative oxidoreductase" +BW25113_2881 xdhD 0 3014675 3017545 1 8327 0.1250435388366423 2871 359 "putative hypoxanthine oxidase and molybdopterin-binding/Fe-S binding" +BW25113_2881__5prime xdhD__5prime 0 3014477 3014674 1 181 0.07575757575757576 198 15 "putative hypoxanthine oxidase and molybdopterin-binding/Fe-S binding" +BW25113_2881__3prime xdhD__3prime 0 3017546 3017743 1 242 0.07575757575757576 198 15 "putative hypoxanthine oxidase and molybdopterin-binding/Fe-S binding" +BW25113_2882 xanQ 0 3017710 3019110 1 5968 0.1470378301213419 1401 206 "xanthine permease" +BW25113_2882__5prime xanQ__5prime 0 3017512 3017709 1 133 0.03535353535353535 198 7 "xanthine permease" +BW25113_2882__3prime xanQ__3prime 0 3019111 3019308 1 1028 0.21212121212121213 198 42 "xanthine permease" +BW25113_2883 guaD 0 3019125 3020444 1 4576 0.13106060606060607 1320 173 "guanine deaminase" +BW25113_2883__5prime guaD__5prime 0 3018927 3019124 1 968 0.16666666666666666 198 33 "guanine deaminase" +BW25113_2883__3prime guaD__3prime 0 3020445 3020642 1 193 0.0707070707070707 198 14 "guanine deaminase" +BW25113_4464 ygfQ 0 3020480 3021847 1 3142 0.08625730994152046 1368 118 "putative purine permease" +BW25113_4464__5prime ygfQ__5prime 0 3020282 3020479 1 161 0.07575757575757576 198 15 "putative purine permease" +BW25113_4464__3prime ygfQ__3prime 0 3021848 3022045 1 489 0.09595959595959595 198 19 "putative purine permease" +BW25113_2886 ygfS 0 3021883 3022371 -1 1611 0.130879345603272 489 64 "putative 4Fe-4S ferredoxin-type oxidoreductase subunit" +BW25113_2886__5prime ygfS__5prime 0 3022372 3022569 -1 596 0.1414141414141414 198 28 "putative 4Fe-4S ferredoxin-type oxidoreductase subunit" +BW25113_2886__3prime ygfS__3prime 0 3021685 3021882 -1 465 0.1111111111111111 198 22 "putative 4Fe-4S ferredoxin-type oxidoreductase subunit" +BW25113_2887 ygfT 0 3022371 3024290 -1 7879 0.16770833333333332 1920 322 "putative oxidoreductase and Fe-S subunit/nucleotide-binding subunit" +BW25113_2887__5prime ygfT__5prime 0 3024291 3024488 -1 684 0.1717171717171717 198 34 "putative oxidoreductase and Fe-S subunit/nucleotide-binding subunit" +BW25113_2887__3prime ygfT__3prime 0 3022173 3022370 -1 777 0.16161616161616163 198 32 "putative oxidoreductase and Fe-S subunit/nucleotide-binding subunit" +BW25113_2888 uacT 0 3024726 3026174 1 15875 0.295376121463078 1449 428 "uric acid permease" +BW25113_2888__5prime uacT__5prime 0 3024528 3024725 1 919 0.16666666666666666 198 33 "uric acid permease" +BW25113_2888__3prime uacT__3prime 0 3026175 3026372 1 1217 0.20707070707070707 198 41 "uric acid permease" +BW25113_4684 yqfG 0 3026176 3026301 1 1004 0.18253968253968253 126 23 "uncharacterized protein" +BW25113_4684__5prime yqfG__5prime 0 3025978 3026175 1 2165 0.2474747474747475 198 49 "uncharacterized protein" +BW25113_4684__3prime yqfG__3prime 0 3026302 3026499 1 607 0.19696969696969696 198 39 "uncharacterized protein" +BW25113_2889 idi 0 3026424 3026972 1 2855 0.18579234972677597 549 102 "isopentenyl diphosphate isomerase" +BW25113_2889__5prime idi__5prime 0 3026226 3026423 1 1189 0.20202020202020202 198 40 "isopentenyl diphosphate isomerase" +BW25113_2889__3prime idi__3prime 0 3026973 3027170 1 21 0.010101010101010102 198 2 "isopentenyl diphosphate isomerase" +BW25113_2890 lysS 0 3027016 3028533 -1 172 0.011198945981554678 1518 17 "lysine tRNA synthetase and constitutive" +BW25113_2890__5prime lysS__5prime 0 3028534 3028731 -1 0 0.0 198 0 "lysine tRNA synthetase and constitutive" +BW25113_2890__3prime lysS__3prime 0 3026818 3027015 -1 647 0.13131313131313133 198 26 "lysine tRNA synthetase and constitutive" +3028450_3028562 3028450_3028562 0 3028451 3028562 1 7 0.008928571428571428 112 1 "3028450_3028562" +3028450_3028562__5prime 3028450_3028562__5prime 0 3028253 3028450 1 21 0.010101010101010102 198 2 "3028450_3028562" +3028450_3028562__3prime 3028450_3028562__3prime 0 3028563 3028760 1 0 0.0 198 0 "3028450_3028562" +BW25113_2891 prfB 0 3028543 3029641 -1 0 0.0 1099 0 "peptide chain release factor RF-2" +BW25113_2891__5prime prfB__5prime 0 3029642 3029839 -1 104 0.04040404040404041 198 8 "peptide chain release factor RF-2" +BW25113_2891__3prime prfB__3prime 0 3028345 3028542 -1 28 0.015151515151515152 198 3 "peptide chain release factor RF-2" +BW25113_2892 recJ 0 3029732 3031465 -1 4159 0.11764705882352941 1734 204 '"ssDNA exonuclease and 5''--> 3''-specific"' +BW25113_2892__5prime recJ__5prime 0 3031466 3031663 -1 367 0.10101010101010101 198 20 '"ssDNA exonuclease and 5''--> 3''-specific"' +BW25113_2892__3prime recJ__3prime 0 3029534 3029731 -1 16 0.010101010101010102 198 2 '"ssDNA exonuclease and 5''--> 3''-specific"' +BW25113_2893 dsbC 0 3031471 3032181 -1 3010 0.13642756680731363 711 97 "protein disulfide isomerase II" +BW25113_2893__5prime dsbC__5prime 0 3032182 3032379 -1 56 0.030303030303030304 198 6 "protein disulfide isomerase II" +BW25113_2893__3prime dsbC__3prime 0 3031273 3031470 -1 200 0.0707070707070707 198 14 "protein disulfide isomerase II" +BW25113_2894 xerD 0 3032206 3033102 -1 389 0.046822742474916385 897 42 "site-specific tyrosine recombinase" +BW25113_2894__5prime xerD__5prime 0 3033103 3033300 -1 614 0.16161616161616163 198 32 "site-specific tyrosine recombinase" +BW25113_2894__3prime xerD__3prime 0 3032008 3032205 -1 658 0.1414141414141414 198 28 "site-specific tyrosine recombinase" +BW25113_2895 fldB 0 3033214 3033735 1 1070 0.09961685823754789 522 52 "flavodoxin 2" +BW25113_2895__5prime fldB__5prime 0 3033016 3033213 1 442 0.11616161616161616 198 23 "flavodoxin 2" +BW25113_2895__3prime fldB__3prime 0 3033736 3033933 1 402 0.0707070707070707 198 14 "flavodoxin 2" +BW25113_2896 cptA 0 3033775 3034182 -1 1486 0.11274509803921569 408 46 "toxin of CptAB toxin-antitoxin pair" +BW25113_2896__5prime cptA__5prime 0 3034183 3034380 -1 153 0.03535353535353535 198 7 "toxin of CptAB toxin-antitoxin pair" +BW25113_2896__3prime cptA__3prime 0 3033577 3033774 -1 480 0.12626262626262627 198 25 "toxin of CptAB toxin-antitoxin pair" +BW25113_2897 sdhE 0 3034163 3034429 -1 263 0.0599250936329588 267 16 "flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair" +BW25113_2897__5prime sdhE__5prime 0 3034430 3034627 -1 277 0.05555555555555555 198 11 "flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair" +BW25113_2897__3prime sdhE__3prime 0 3033965 3034162 -1 936 0.12626262626262627 198 25 "flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair" +BW25113_2898 ygfZ 0 3034672 3035652 1 268 0.011213047910295617 981 11 "iron-sulfur cluster repair protein and plumbagin resistance" +BW25113_2898__5prime ygfZ__5prime 0 3034474 3034671 1 424 0.09090909090909091 198 18 "iron-sulfur cluster repair protein and plumbagin resistance" +BW25113_2898__3prime ygfZ__3prime 0 3035653 3035850 1 812 0.16666666666666666 198 33 "iron-sulfur cluster repair protein and plumbagin resistance" +3035679_3035834 3035679_3035834 0 3035680 3035834 1 347 0.14193548387096774 155 22 "3035679_3035834" +3035679_3035834__5prime 3035679_3035834__5prime 0 3035482 3035679 1 570 0.05555555555555555 198 11 "3035679_3035834" +3035679_3035834__3prime 3035679_3035834__3prime 0 3035835 3036032 1 1490 0.18181818181818182 198 36 "3035679_3035834" +BW25113_2899 yqfA 0 3035848 3036507 -1 2414 0.13484848484848486 660 89 "hemolysin III family HylIII inner membrane protein" +BW25113_2899__5prime yqfA__5prime 0 3036508 3036705 -1 260 0.0707070707070707 198 14 "hemolysin III family HylIII inner membrane protein" +BW25113_2899__3prime yqfA__3prime 0 3035650 3035847 -1 798 0.15656565656565657 198 31 "hemolysin III family HylIII inner membrane protein" +BW25113_2900 yqfB 0 3036671 3036982 -1 775 0.11217948717948718 312 35 "UPF0267 family protein" +BW25113_2900__5prime yqfB__5prime 0 3036983 3037180 -1 519 0.12626262626262627 198 25 "UPF0267 family protein" +BW25113_2900__3prime yqfB__3prime 0 3036473 3036670 -1 260 0.0707070707070707 198 14 "UPF0267 family protein" +BW25113_2901 bglA 0 3037021 3038460 1 5748 0.1361111111111111 1440 196 "6-phospho-beta-glucosidase A" +BW25113_2901__5prime bglA__5prime 0 3036823 3037020 1 480 0.13636363636363635 198 27 "6-phospho-beta-glucosidase A" +BW25113_2901__3prime bglA__3prime 0 3038461 3038658 1 694 0.11616161616161616 198 23 "6-phospho-beta-glucosidase A" +3038471_3038499 3038471_3038499 0 3038472 3038499 1 193 0.21428571428571427 28 6 "3038471_3038499" +3038471_3038499__5prime 3038471_3038499__5prime 0 3038274 3038471 1 1475 0.2777777777777778 198 55 "3038471_3038499" +3038471_3038499__3prime 3038471_3038499__3prime 0 3038500 3038697 1 471 0.07575757575757576 198 15 "3038471_3038499" +BW25113_2902 ygfF 0 3038517 3039260 -1 1274 0.08870967741935484 744 66 "putative NAD(P)-dependent oxidoreductase with NAD(P)-binding Rossmann-fold domain" +BW25113_2902__5prime ygfF__5prime 0 3039261 3039458 -1 763 0.17676767676767677 198 35 "putative NAD(P)-dependent oxidoreductase with NAD(P)-binding Rossmann-fold domain" +BW25113_2902__3prime ygfF__3prime 0 3038319 3038516 -1 1137 0.23737373737373738 198 47 "putative NAD(P)-dependent oxidoreductase with NAD(P)-binding Rossmann-fold domain" +BW25113_2903 gcvP 0 3039527 3042400 -1 7861 0.12038970076548365 2874 346 "glycine decarboxylase and PLP-dependent and subunit (protein P) of glycine cleavage complex" +BW25113_2903__5prime gcvP__5prime 0 3042401 3042598 -1 593 0.13131313131313133 198 26 "glycine decarboxylase and PLP-dependent and subunit (protein P) of glycine cleavage complex" +BW25113_2903__3prime gcvP__3prime 0 3039329 3039526 -1 1091 0.1919191919191919 198 38 "glycine decarboxylase and PLP-dependent and subunit (protein P) of glycine cleavage complex" +BW25113_2904 gcvH 0 3042519 3042908 -1 716 0.1 390 39 "glycine cleavage complex lipoylprotein" +BW25113_2904__5prime gcvH__5prime 0 3042909 3043106 -1 1002 0.1111111111111111 198 22 "glycine cleavage complex lipoylprotein" +BW25113_2904__3prime gcvH__3prime 0 3042321 3042518 -1 606 0.13131313131313133 198 26 "glycine cleavage complex lipoylprotein" +BW25113_2905 gcvT 0 3042932 3044026 -1 3375 0.1141552511415525 1095 125 "aminomethyltransferase and tetrahydrofolate-dependent and subunit (T protein) of glycine cleavage complex" +BW25113_2905__5prime gcvT__5prime 0 3044027 3044224 -1 221 0.03535353535353535 198 7 "aminomethyltransferase and tetrahydrofolate-dependent and subunit (T protein) of glycine cleavage complex" +BW25113_2905__3prime gcvT__3prime 0 3042734 3042931 -1 534 0.14646464646464646 198 29 "aminomethyltransferase and tetrahydrofolate-dependent and subunit (T protein) of glycine cleavage complex" +BW25113_2906 ubiI 0 3044474 3045676 -1 2175 0.08811305070656691 1203 106 "2-octaprenylphenol hydroxylase and FAD-dependent" +BW25113_2906__5prime ubiI__5prime 0 3045677 3045874 -1 222 0.04040404040404041 198 8 "2-octaprenylphenol hydroxylase and FAD-dependent" +BW25113_2906__3prime ubiI__3prime 0 3044276 3044473 -1 14 0.010101010101010102 198 2 "2-octaprenylphenol hydroxylase and FAD-dependent" +BW25113_2907 ubiH 0 3045699 3046877 -1 162 0.008481764206955046 1179 10 "2-octaprenyl-6-methoxyphenol hydroxylase and FAD/NAD(P)-binding" +BW25113_2907__5prime ubiH__5prime 0 3046878 3047075 -1 446 0.12121212121212122 198 24 "2-octaprenyl-6-methoxyphenol hydroxylase and FAD/NAD(P)-binding" +BW25113_2907__3prime ubiH__3prime 0 3045501 3045698 -1 395 0.07575757575757576 198 15 "2-octaprenyl-6-methoxyphenol hydroxylase and FAD/NAD(P)-binding" +BW25113_2908 pepP 0 3046874 3048199 -1 2369 0.06636500754147813 1326 88 "proline aminopeptidase P II" +BW25113_2908__5prime pepP__5prime 0 3048200 3048397 -1 502 0.1111111111111111 198 22 "proline aminopeptidase P II" +BW25113_2908__3prime pepP__3prime 0 3046676 3046873 -1 0 0.0 198 0 "proline aminopeptidase P II" +BW25113_2909 ygfB 0 3048225 3048803 -1 2026 0.13471502590673576 579 78 "UPF0149 family protein" +BW25113_2909__5prime ygfB__5prime 0 3048804 3049001 -1 890 0.12626262626262627 198 25 "UPF0149 family protein" +BW25113_2909__3prime ygfB__3prime 0 3048027 3048224 -1 239 0.06060606060606061 198 12 "UPF0149 family protein" +BW25113_2910 zapA 0 3048971 3049300 1 1637 0.15757575757575756 330 52 "FtsZ stabilizer" +BW25113_2910__5prime zapA__5prime 0 3048773 3048970 1 763 0.1414141414141414 198 28 "FtsZ stabilizer" +BW25113_2910__3prime zapA__3prime 0 3049301 3049498 1 18 0.005050505050505051 198 1 "FtsZ stabilizer" +BW25113_2911 ssrS 0 3049342 3049524 1 53 0.01639344262295082 183 3 "6S RNA inhibits RNA polymerase promoter binding" +BW25113_2911__5prime ssrS__5prime 0 3049144 3049341 1 944 0.16161616161616163 198 32 "6S RNA inhibits RNA polymerase promoter binding" +BW25113_2911__3prime ssrS__3prime 0 3049525 3049722 1 517 0.11616161616161616 198 23 "6S RNA inhibits RNA polymerase promoter binding" +BW25113_2912 fau 0 3049600 3050148 1 1833 0.16393442622950818 549 90 "5-formyltetrahydrofolate cyclo-ligase family protein" +BW25113_2912__5prime fau__5prime 0 3049402 3049599 1 119 0.03535353535353535 198 7 "5-formyltetrahydrofolate cyclo-ligase family protein" +BW25113_2912__3prime fau__3prime 0 3050149 3050346 1 426 0.12121212121212122 198 24 "5-formyltetrahydrofolate cyclo-ligase family protein" +BW25113_4446 sibC 0 3050208 3050347 1 179 0.12142857142857143 140 17 "sRNA antisense regulator of toxic IbsC protein" +BW25113_4446__5prime sibC__5prime 0 3050010 3050207 1 876 0.19696969696969696 198 39 "sRNA antisense regulator of toxic IbsC protein" +BW25113_4446__3prime sibC__3prime 0 3050348 3050545 1 74 0.03535353535353535 198 7 "sRNA antisense regulator of toxic IbsC protein" +BW25113_4665 ibsC 0 3050249 3050308 -1 95 0.13333333333333333 60 8 "toxic membrane protein" +BW25113_4665__5prime ibsC__5prime 0 3050309 3050506 -1 83 0.04040404040404041 198 8 "toxic membrane protein" +BW25113_4665__3prime ibsC__3prime 0 3050051 3050248 -1 808 0.1919191919191919 198 38 "toxic membrane protein" +BW25113_2913 serA 0 3050537 3051769 -1 3637 0.11678832116788321 1233 144 "D-3-phosphoglycerate dehydrogenase" +BW25113_2913__5prime serA__5prime 0 3051770 3051967 -1 453 0.050505050505050504 198 10 "D-3-phosphoglycerate dehydrogenase" +BW25113_2913__3prime serA__3prime 0 3050339 3050536 -1 83 0.04040404040404041 198 8 "D-3-phosphoglycerate dehydrogenase" +BW25113_2914 rpiA 0 3052025 3052684 -1 348 0.02878787878787879 660 19 "ribose 5-phosphate isomerase and constitutive" +BW25113_2914__5prime rpiA__5prime 0 3052685 3052882 -1 314 0.07575757575757576 198 15 "ribose 5-phosphate isomerase and constitutive" +BW25113_2914__3prime rpiA__3prime 0 3051827 3052024 -1 47 0.010101010101010102 198 2 "ribose 5-phosphate isomerase and constitutive" +BW25113_2915 yqfE 0 3052740 3053060 -1 464 0.09034267912772585 321 29 "3052739_3053060" +BW25113_2915__5prime yqfE__5prime 0 3053061 3053258 -1 548 0.1111111111111111 198 22 "3052739_3053060" +BW25113_2915__3prime yqfE__3prime 0 3052542 3052739 -1 161 0.025252525252525252 198 5 "3052739_3053060" +BW25113_2916 argP 0 3053112 3054005 1 2079 0.11521252796420582 894 103 "transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor" +BW25113_2916__5prime argP__5prime 0 3052914 3053111 1 659 0.1414141414141414 198 28 "transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor" +BW25113_2916__3prime argP__3prime 0 3054006 3054203 1 373 0.10101010101010101 198 20 "transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor" +3054018_3054039 3054018_3054039 0 3054019 3054039 1 33 0.14285714285714285 21 3 "3054018_3054039" +3054018_3054039__5prime 3054018_3054039__5prime 0 3053821 3054018 1 1107 0.23232323232323232 198 46 "3054018_3054039" +3054018_3054039__3prime 3054018_3054039__3prime 0 3054040 3054237 1 459 0.08585858585858586 198 17 "3054018_3054039" +BW25113_2917 scpA 0 3054209 3056353 1 6918 0.11468531468531469 2145 246 "methylmalonyl-CoA mutase" +BW25113_2917__5prime scpA__5prime 0 3054011 3054208 1 479 0.1111111111111111 198 22 "methylmalonyl-CoA mutase" +BW25113_2917__3prime scpA__3prime 0 3056354 3056551 1 312 0.1111111111111111 198 22 "methylmalonyl-CoA mutase" +BW25113_2918 argK 0 3056346 3057341 1 3385 0.12751004016064257 996 127 "membrane ATPase/protein kinase" +BW25113_2918__5prime argK__5prime 0 3056148 3056345 1 814 0.12626262626262627 198 25 "membrane ATPase/protein kinase" +BW25113_2918__3prime argK__3prime 0 3057342 3057539 1 283 0.05555555555555555 198 11 "membrane ATPase/protein kinase" +BW25113_2919 scpB 0 3057352 3058137 1 2039 0.08269720101781171 786 65 "methylmalonyl-CoA decarboxylase and biotin-independent" +BW25113_2919__5prime scpB__5prime 0 3057154 3057351 1 281 0.0707070707070707 198 14 "methylmalonyl-CoA decarboxylase and biotin-independent" +BW25113_2919__3prime scpB__3prime 0 3058138 3058335 1 349 0.0707070707070707 198 14 "methylmalonyl-CoA decarboxylase and biotin-independent" +BW25113_2920 scpC 0 3058161 3059639 1 5510 0.10547667342799188 1479 156 "propionyl-CoA:succinate CoA transferase" +BW25113_2920__5prime scpC__5prime 0 3057963 3058160 1 1184 0.1111111111111111 198 22 "propionyl-CoA:succinate CoA transferase" +BW25113_2920__3prime scpC__3prime 0 3059640 3059837 1 2062 0.2878787878787879 198 57 "propionyl-CoA:succinate CoA transferase" +BW25113_2921 ygfI 0 3059636 3060532 -1 8560 0.2954292084726867 897 265 "putative DNA-binding transcriptional regulator" +BW25113_2921__5prime ygfI__5prime 0 3060533 3060730 -1 1459 0.25757575757575757 198 51 "putative DNA-binding transcriptional regulator" +BW25113_2921__3prime ygfI__3prime 0 3059438 3059635 -1 3194 0.32323232323232326 198 64 "putative DNA-binding transcriptional regulator" +BW25113_2922 yggE 0 3060699 3061439 -1 2376 0.16194331983805668 741 120 "oxidative stress defense protein" +BW25113_2922__5prime yggE__5prime 0 3061440 3061637 -1 479 0.1414141414141414 198 28 "oxidative stress defense protein" +BW25113_2922__3prime yggE__3prime 0 3060501 3060698 -1 1271 0.21212121212121213 198 42 "oxidative stress defense protein" +BW25113_2923 argO 0 3061532 3062167 -1 2938 0.19968553459119498 636 127 "arginine transporter" +BW25113_2923__5prime argO__5prime 0 3062168 3062365 -1 679 0.15151515151515152 198 30 "arginine transporter" +BW25113_2923__3prime argO__3prime 0 3061334 3061531 -1 296 0.12121212121212122 198 24 "arginine transporter" +BW25113_2924 mscS 0 3062306 3063166 -1 5217 0.2067363530778165 861 178 "mechanosensitive channel protein and small conductance" +BW25113_2924__5prime mscS__5prime 0 3063167 3063364 -1 391 0.03535353535353535 198 7 "mechanosensitive channel protein and small conductance" +BW25113_2924__3prime mscS__3prime 0 3062108 3062305 -1 587 0.1111111111111111 198 22 "mechanosensitive channel protein and small conductance" +3063361_3063459 3063361_3063459 0 3063362 3063459 1 17 0.030612244897959183 98 3 "3063361_3063459" +3063361_3063459__5prime 3063361_3063459__5prime 0 3063164 3063361 1 391 0.03535353535353535 198 7 "3063361_3063459" +3063361_3063459__3prime 3063361_3063459__3prime 0 3063460 3063657 1 81 0.03535353535353535 198 7 "3063361_3063459" +BW25113_2925 fbaA 0 3063524 3064603 -1 21 0.001851851851851852 1080 2 "fructose-bisphosphate aldolase and class II" +BW25113_2925__5prime fbaA__5prime 0 3064604 3064801 -1 765 0.2222222222222222 198 44 "fructose-bisphosphate aldolase and class II" +BW25113_2925__3prime fbaA__3prime 0 3063326 3063523 -1 238 0.050505050505050504 198 10 "fructose-bisphosphate aldolase and class II" +BW25113_2926 pgk 0 3064818 3065981 -1 14 0.001718213058419244 1164 2 "phosphoglycerate kinase" +BW25113_2926__5prime pgk__5prime 0 3065982 3066179 -1 514 0.15151515151515152 198 30 "phosphoglycerate kinase" +BW25113_2926__3prime pgk__3prime 0 3064620 3064817 -1 758 0.21717171717171718 198 43 "phosphoglycerate kinase" +3065092_3065248 3065092_3065248 0 3065093 3065248 1 0 0.0 156 0 "3065092_3065248" +3065092_3065248__5prime 3065092_3065248__5prime 0 3064895 3065092 1 0 0.0 198 0 "3065092_3065248" +3065092_3065248__3prime 3065092_3065248__3prime 0 3065249 3065446 1 0 0.0 198 0 "3065092_3065248" +BW25113_2927 epd 0 3066031 3067050 -1 2458 0.1303921568627451 1020 133 "D-erythrose 4-phosphate dehydrogenase" +BW25113_2927__5prime epd__5prime 0 3067051 3067248 -1 148 0.04040404040404041 198 8 "D-erythrose 4-phosphate dehydrogenase" +BW25113_2927__3prime epd__3prime 0 3065833 3066030 -1 0 0.0 198 0 "D-erythrose 4-phosphate dehydrogenase" +BW25113_2928 yggC 0 3067335 3068048 -1 1101 0.10364145658263306 714 74 "putative PanK family P-loop kinase" +BW25113_2928__5prime yggC__5prime 0 3068049 3068246 -1 571 0.1111111111111111 198 22 "putative PanK family P-loop kinase" +BW25113_2928__3prime yggC__3prime 0 3067137 3067334 -1 142 0.025252525252525252 198 5 "putative PanK family P-loop kinase" +BW25113_2929 yggD 0 3068045 3068554 -1 1024 0.09803921568627451 510 50 "MtlR family putative transcriptional repressor" +BW25113_2929__5prime yggD__5prime 0 3068555 3068752 -1 717 0.19696969696969696 198 39 "MtlR family putative transcriptional repressor" +BW25113_2929__3prime yggD__3prime 0 3067847 3068044 -1 187 0.08585858585858586 198 17 "MtlR family putative transcriptional repressor" +BW25113_2930 yggF 0 3068576 3069541 -1 3447 0.15424430641821946 966 149 "fructose 1 and 6 bisphosphatase isozyme" +BW25113_2930__5prime yggF__5prime 0 3069542 3069739 -1 135 0.025252525252525252 198 5 "fructose 1 and 6 bisphosphatase isozyme" +BW25113_2930__3prime yggF__3prime 0 3068378 3068575 -1 209 0.10101010101010101 198 20 "fructose 1 and 6 bisphosphatase isozyme" +BW25113_4465 yggP 0 3069538 3070815 -1 8991 0.2323943661971831 1278 297 "putative Zn-binding dehydrogenase" +BW25113_4465__5prime yggP__5prime 0 3070816 3071013 -1 2489 0.3383838383838384 198 67 "putative Zn-binding dehydrogenase" +BW25113_4465__3prime yggP__3prime 0 3069340 3069537 -1 404 0.10606060606060606 198 21 "putative Zn-binding dehydrogenase" +BW25113_2933 cmtA 0 3070830 3072218 -1 12901 0.29301655867530596 1389 407 "putative mannitol-specific PTS enzymes: IIB component/IIC component" +BW25113_2933__5prime cmtA__5prime 0 3072219 3072416 -1 2200 0.29292929292929293 198 58 "putative mannitol-specific PTS enzymes: IIB component/IIC component" +BW25113_2933__3prime cmtA__3prime 0 3070632 3070829 -1 2060 0.3333333333333333 198 66 "putative mannitol-specific PTS enzymes: IIB component/IIC component" +BW25113_2934 cmtB 0 3072246 3072689 -1 3754 0.2702702702702703 444 120 "putative mannitol-specific enzyme IIA component of PTS" +BW25113_2934__5prime cmtB__5prime 0 3072690 3072887 -1 106 0.04040404040404041 198 8 "putative mannitol-specific enzyme IIA component of PTS" +BW25113_2934__3prime cmtB__3prime 0 3072048 3072245 -1 2079 0.3686868686868687 198 73 "putative mannitol-specific enzyme IIA component of PTS" +BW25113_2935 tktA 0 3073003 3074994 -1 1209 0.029116465863453816 1992 58 "transketolase 1 and thiamine triphosphate-binding" +BW25113_2935__5prime tktA__5prime 0 3074995 3075192 -1 100 0.030303030303030304 198 6 "transketolase 1 and thiamine triphosphate-binding" +BW25113_2935__3prime tktA__3prime 0 3072805 3073002 -1 495 0.1414141414141414 198 28 "transketolase 1 and thiamine triphosphate-binding" +BW25113_2936 loiP 0 3075272 3076030 1 2110 0.1370223978919631 759 104 "Phe-Phe periplasmic metalloprotease and OM lipoprotein; low salt-inducible; heat shock protein that binds Era" +BW25113_2936__5prime loiP__5prime 0 3075074 3075271 1 508 0.07575757575757576 198 15 "Phe-Phe periplasmic metalloprotease and OM lipoprotein; low salt-inducible; heat shock protein that binds Era" +BW25113_2936__3prime loiP__3prime 0 3076031 3076228 1 433 0.10606060606060606 198 21 "Phe-Phe periplasmic metalloprotease and OM lipoprotein; low salt-inducible; heat shock protein that binds Era" +3076048_3076195 3076048_3076195 0 3076049 3076195 1 308 0.09523809523809523 147 14 "3076048_3076195" +3076048_3076195__5prime 3076048_3076195__5prime 0 3075851 3076048 1 368 0.12626262626262627 198 25 "3076048_3076195" +3076048_3076195__3prime 3076048_3076195__3prime 0 3076196 3076393 1 440 0.08585858585858586 198 17 "3076048_3076195" +BW25113_2937 speB 0 3076236 3077156 -1 2156 0.12269272529858849 921 113 "agmatinase" +BW25113_2937__5prime speB__5prime 0 3077157 3077354 -1 544 0.13131313131313133 198 26 "agmatinase" +BW25113_2937__3prime speB__3prime 0 3076038 3076235 -1 363 0.08585858585858586 198 17 "agmatinase" +BW25113_2938 speA 0 3077294 3079270 -1 4926 0.12392513909964593 1977 245 "biosynthetic arginine decarboxylase and PLP-binding" +BW25113_2938__5prime speA__5prime 0 3079271 3079468 -1 216 0.0707070707070707 198 14 "biosynthetic arginine decarboxylase and PLP-binding" +BW25113_2938__3prime speA__3prime 0 3077096 3077293 -1 377 0.10101010101010101 198 20 "biosynthetic arginine decarboxylase and PLP-binding" +BW25113_2939 yqgB 0 3079279 3079410 -1 216 0.10606060606060606 132 14 "uncharacterized protein" +BW25113_2939__5prime yqgB__5prime 0 3079411 3079608 -1 838 0.13131313131313133 198 26 "uncharacterized protein" +BW25113_2939__3prime yqgB__3prime 0 3079081 3079278 -1 1104 0.22727272727272727 198 45 "uncharacterized protein" +BW25113_2940 yqgC 0 3079546 3079761 1 487 0.10185185185185185 216 22 "uncharacterized protein" +BW25113_2940__5prime yqgC__5prime 0 3079348 3079545 1 601 0.10606060606060606 198 21 "uncharacterized protein" +BW25113_2940__3prime yqgC__3prime 0 3079762 3079959 1 118 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_2942 metK 0 3080065 3081219 1 49 0.005194805194805195 1155 6 "S-adenosylmethionine synthetase" +BW25113_2942__5prime metK__5prime 0 3079867 3080064 1 168 0.09090909090909091 198 18 "S-adenosylmethionine synthetase" +BW25113_2942__3prime metK__3prime 0 3081220 3081417 1 370 0.050505050505050504 198 10 "S-adenosylmethionine synthetase" +3081270_3081296 3081270_3081296 0 3081271 3081296 1 0 0.0 26 0 "3081270_3081296" +3081270_3081296__5prime 3081270_3081296__5prime 0 3081073 3081270 1 349 0.06565656565656566 198 13 "3081270_3081296" +3081270_3081296__3prime 3081270_3081296__3prime 0 3081297 3081494 1 78 0.020202020202020204 198 4 "3081270_3081296" +BW25113_2943 galP 0 3081643 3083037 1 5149 0.16057347670250896 1395 224 "D-galactose transporter" +BW25113_2943__5prime galP__5prime 0 3081445 3081642 1 156 0.045454545454545456 198 9 "D-galactose transporter" +BW25113_2943__3prime galP__3prime 0 3083038 3083235 1 493 0.15151515151515152 198 30 "D-galactose transporter" +BW25113_2944 yggI 0 3083114 3083611 1 1206 0.13253012048192772 498 66 "Zn-dependent metalloprotease-related protein" +BW25113_2944__5prime yggI__5prime 0 3082916 3083113 1 940 0.14646464646464646 198 29 "Zn-dependent metalloprotease-related protein" +BW25113_2944__3prime yggI__3prime 0 3083612 3083809 1 778 0.1414141414141414 198 28 "Zn-dependent metalloprotease-related protein" +BW25113_2945 endA 0 3083706 3084413 1 2187 0.11440677966101695 708 81 "DNA-specific endonuclease I" +BW25113_2945__5prime endA__5prime 0 3083508 3083705 1 357 0.09595959595959595 198 19 "DNA-specific endonuclease I" +BW25113_2945__3prime endA__3prime 0 3084414 3084611 1 1085 0.1414141414141414 198 28 "DNA-specific endonuclease I" +BW25113_2946 rsmE 0 3084493 3085224 1 1684 0.06830601092896176 732 50 "16S rRNA m(3)U1498 methyltransferase and SAM-dependent" +BW25113_2946__5prime rsmE__5prime 0 3084295 3084492 1 1339 0.14646464646464646 198 29 "16S rRNA m(3)U1498 methyltransferase and SAM-dependent" +BW25113_2946__3prime rsmE__3prime 0 3085225 3085422 1 298 0.09595959595959595 198 19 "16S rRNA m(3)U1498 methyltransferase and SAM-dependent" +BW25113_2947 gshB 0 3085237 3086187 1 1880 0.08622502628811778 951 82 "glutathione synthetase" +BW25113_2947__5prime gshB__5prime 0 3085039 3085236 1 108 0.025252525252525252 198 5 "glutathione synthetase" +BW25113_2947__3prime gshB__3prime 0 3086188 3086385 1 289 0.0707070707070707 198 14 "glutathione synthetase" +BW25113_2948 yqgE 0 3086296 3086859 1 1152 0.09929078014184398 564 56 "uncharacterized protein" +BW25113_2948__5prime yqgE__5prime 0 3086098 3086295 1 449 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_2948__3prime yqgE__3prime 0 3086860 3087057 1 0 0.0 198 0 "uncharacterized protein" +BW25113_2949 yqgF 0 3086859 3087275 1 41 0.004796163069544364 417 2 "putative Holliday junction resolvase" +BW25113_2949__5prime yqgF__5prime 0 3086661 3086858 1 721 0.16666666666666666 198 33 "putative Holliday junction resolvase" +BW25113_2949__3prime yqgF__3prime 0 3087276 3087473 1 713 0.1919191919191919 198 38 "putative Holliday junction resolvase" +3087324_3087449 3087324_3087449 0 3087325 3087449 1 545 0.232 125 29 "3087324_3087449" +3087324_3087449__5prime 3087324_3087449__5prime 0 3087127 3087324 1 197 0.050505050505050504 198 10 "3087324_3087449" +3087324_3087449__3prime 3087324_3087449__3prime 0 3087450 3087647 1 520 0.11616161616161616 198 23 "3087324_3087449" +BW25113_2950 yggR 0 3087459 3088439 -1 2347 0.12436289500509684 981 122 "putative PilT family AAA+ ATPase" +BW25113_2950__5prime yggR__5prime 0 3088440 3088637 -1 271 0.08080808080808081 198 16 "putative PilT family AAA+ ATPase" +BW25113_2950__3prime yggR__3prime 0 3087261 3087458 -1 742 0.19696969696969696 198 39 "putative PilT family AAA+ ATPase" +BW25113_2951 yggS 0 3088457 3089161 1 1550 0.12482269503546099 705 88 "UPF0001 family protein and PLP-binding" +BW25113_2951__5prime yggS__5prime 0 3088259 3088456 1 973 0.20707070707070707 198 41 "UPF0001 family protein and PLP-binding" +BW25113_2951__3prime yggS__3prime 0 3089162 3089359 1 486 0.15151515151515152 198 30 "UPF0001 family protein and PLP-binding" +BW25113_2952 yggT 0 3089179 3089745 1 1482 0.13932980599647266 567 79 "putative inner membrane protein; compensates for loss in K+ uptake" +BW25113_2952__5prime yggT__5prime 0 3088981 3089178 1 349 0.10101010101010101 198 20 "putative inner membrane protein; compensates for loss in K+ uptake" +BW25113_2952__3prime yggT__3prime 0 3089746 3089943 1 711 0.13636363636363635 198 27 "putative inner membrane protein; compensates for loss in K+ uptake" +BW25113_2953 yggU 0 3089742 3090032 1 738 0.10309278350515463 291 30 "UPF0235 family protein" +BW25113_2953__5prime yggU__5prime 0 3089544 3089741 1 736 0.16666666666666666 198 33 "UPF0235 family protein" +BW25113_2953__3prime yggU__3prime 0 3090033 3090230 1 289 0.09090909090909091 198 18 "UPF0235 family protein" +BW25113_2954 rdgB 0 3090040 3090633 1 1034 0.08417508417508418 594 50 "dITP/XTP pyrophosphatase" +BW25113_2954__5prime rdgB__5prime 0 3089842 3090039 1 389 0.08585858585858586 198 17 "dITP/XTP pyrophosphatase" +BW25113_2954__3prime rdgB__3prime 0 3090634 3090831 1 502 0.1919191919191919 198 38 "dITP/XTP pyrophosphatase" +BW25113_2955 yggW 0 3090626 3091762 1 2890 0.11609498680738786 1137 132 "HemN family putative oxidoreductase" +BW25113_2955__5prime yggW__5prime 0 3090428 3090625 1 461 0.08080808080808081 198 16 "HemN family putative oxidoreductase" +BW25113_2955__3prime yggW__3prime 0 3091763 3091960 1 251 0.07575757575757576 198 15 "HemN family putative oxidoreductase" +3091771_3091892 3091771_3091892 0 3091772 3091892 1 206 0.09090909090909091 121 11 "3091771_3091892" +3091771_3091892__5prime 3091771_3091892__5prime 0 3091574 3091771 1 600 0.1111111111111111 198 22 "3091771_3091892" +3091771_3091892__3prime 3091771_3091892__3prime 0 3091893 3092090 1 253 0.0707070707070707 198 14 "3091771_3091892" +BW25113_2956 yggM 0 3091917 3092924 -1 2142 0.09623015873015874 1008 97 "DUF1202 family putative secreted protein" +BW25113_2956__5prime yggM__5prime 0 3092925 3093122 -1 311 0.07575757575757576 198 15 "DUF1202 family putative secreted protein" +BW25113_2956__3prime yggM__3prime 0 3091719 3091916 -1 280 0.08585858585858586 198 17 "DUF1202 family putative secreted protein" +BW25113_2957 ansB 0 3093041 3094087 -1 3349 0.1489971346704871 1047 156 "periplasmic L-asparaginase 2" +BW25113_2957__5prime ansB__5prime 0 3094088 3094285 -1 240 0.10101010101010101 198 20 "periplasmic L-asparaginase 2" +BW25113_2957__3prime ansB__3prime 0 3092843 3093040 -1 202 0.06565656565656566 198 13 "periplasmic L-asparaginase 2" +BW25113_2958 yggN 0 3094263 3094982 -1 2624 0.16944444444444445 720 122 "DUF2884 family putative periplasmic protein" +BW25113_2958__5prime yggN__5prime 0 3094983 3095180 -1 193 0.050505050505050504 198 10 "DUF2884 family putative periplasmic protein" +BW25113_2958__3prime yggN__3prime 0 3094065 3094262 -1 196 0.06565656565656566 198 13 "DUF2884 family putative periplasmic protein" +3095054_3095133 3095054_3095133 0 3095055 3095133 1 187 0.11392405063291139 79 9 "3095054_3095133" +3095054_3095133__5prime 3095054_3095133__5prime 0 3094857 3095054 1 277 0.0707070707070707 198 14 "3095054_3095133" +3095054_3095133__3prime 3095054_3095133__3prime 0 3095134 3095331 1 638 0.09595959595959595 198 19 "3095054_3095133" +BW25113_2959 yggL 0 3095166 3095492 -1 710 0.06422018348623854 327 21 "DUF469 family protein" +BW25113_2959__5prime yggL__5prime 0 3095493 3095690 -1 768 0.08080808080808081 198 16 "DUF469 family protein" +BW25113_2959__3prime yggL__3prime 0 3094968 3095165 -1 237 0.06565656565656566 198 13 "DUF469 family protein" +BW25113_2960 trmI 0 3095492 3096211 -1 1953 0.10972222222222222 720 79 "tRNA m(7)G46 methyltransferase and SAM-dependent" +BW25113_2960__5prime trmI__5prime 0 3096212 3096409 -1 480 0.12121212121212122 198 24 "tRNA m(7)G46 methyltransferase and SAM-dependent" +BW25113_2960__3prime trmI__3prime 0 3095294 3095491 -1 257 0.03535353535353535 198 7 "tRNA m(7)G46 methyltransferase and SAM-dependent" +BW25113_2961 mutY 0 3096372 3097424 1 3444 0.12535612535612536 1053 132 "adenine DNA glycosylase" +BW25113_2961__5prime mutY__5prime 0 3096174 3096371 1 177 0.08585858585858586 198 17 "adenine DNA glycosylase" +BW25113_2961__3prime mutY__3prime 0 3097425 3097622 1 353 0.07575757575757576 198 15 "adenine DNA glycosylase" +BW25113_2962 yggX 0 3097452 3097727 1 435 0.07608695652173914 276 21 "protein that protects iron-sulfur proteins against oxidative damage" +BW25113_2962__5prime yggX__5prime 0 3097254 3097451 1 713 0.1111111111111111 198 22 "protein that protects iron-sulfur proteins against oxidative damage" +BW25113_2962__3prime yggX__3prime 0 3097728 3097925 1 426 0.06060606060606061 198 12 "protein that protects iron-sulfur proteins against oxidative damage" +BW25113_2963 mltC 0 3097792 3098871 1 3042 0.1287037037037037 1080 139 "membrane-bound lytic murein transglycosylase C" +BW25113_2963__5prime mltC__5prime 0 3097594 3097791 1 502 0.07575757575757576 198 15 "membrane-bound lytic murein transglycosylase C" +BW25113_2963__3prime mltC__3prime 0 3098872 3099069 1 93 0.045454545454545456 198 9 "membrane-bound lytic murein transglycosylase C" +BW25113_2964 nupG 0 3099073 3100329 1 4453 0.14876690533015116 1257 187 "nucleoside transporter" +BW25113_2964__5prime nupG__5prime 0 3098875 3099072 1 86 0.04040404040404041 198 8 "nucleoside transporter" +BW25113_2964__3prime nupG__3prime 0 3100330 3100527 1 482 0.12121212121212122 198 24 "nucleoside transporter" +BW25113_2965 speC 0 3100379 3102514 -1 5751 0.12453183520599251 2136 266 "ornithine decarboxylase and constitutive" +BW25113_2965__5prime speC__5prime 0 3102515 3102712 -1 911 0.16161616161616163 198 32 "ornithine decarboxylase and constitutive" +BW25113_2965__3prime speC__3prime 0 3100181 3100378 -1 324 0.0707070707070707 198 14 "ornithine decarboxylase and constitutive" +BW25113_2966 yqgA 0 3102912 3103619 1 1372 0.0903954802259887 708 64 "DUF554 family putative inner membrane protein" +BW25113_2966__5prime yqgA__5prime 0 3102714 3102911 1 950 0.13636363636363635 198 27 "DUF554 family putative inner membrane protein" +BW25113_2966__3prime yqgA__3prime 0 3103620 3103817 1 110 0.045454545454545456 198 9 "DUF554 family putative inner membrane protein" +BW25113_2967 pheV 0 3103725 3103800 1 12 0.02631578947368421 76 2 "tRNA-Phe" +BW25113_2967__5prime pheV__5prime 0 3103527 3103724 1 191 0.05555555555555555 198 11 "tRNA-Phe" +BW25113_2967__3prime pheV__3prime 0 3103801 3103998 1 206 0.045454545454545456 198 9 "tRNA-Phe" +BW25113_2967 pheV 0 3103780 3103780 1 0 0.0 1 0 "3103779_3103780" +BW25113_2967__5prime pheV__5prime 0 3103582 3103779 1 121 0.05555555555555555 198 11 "3103779_3103780" +BW25113_2967__3prime pheV__3prime 0 3103781 3103978 1 167 0.030303030303030304 198 6 "3103779_3103780" +BW25113_2968 yghD 0 3103949 3104485 -1 1505 0.1266294227188082 537 68 "putative membrane-anchored secretion pathway M-type protein" +BW25113_2968__5prime yghD__5prime 0 3104486 3104683 -1 181 0.06060606060606061 198 12 "putative membrane-anchored secretion pathway M-type protein" +BW25113_2968__3prime yghD__3prime 0 3103751 3103948 -1 97 0.020202020202020204 198 4 "putative membrane-anchored secretion pathway M-type protein" +BW25113_2969 yghE 0 3104487 3105449 -1 1978 0.09865005192107996 963 95 "3104486_3105449" +BW25113_2969__5prime yghE__5prime 0 3105450 3105647 -1 496 0.09595959595959595 198 19 "3104486_3105449" +BW25113_2969__3prime yghE__3prime 0 3104289 3104486 -1 774 0.18686868686868688 198 37 "3104486_3105449" +BW25113_2970 yghF 0 3105452 3106300 -1 3159 0.1625441696113074 849 138 "3105451_3106300" +BW25113_2970__5prime yghF__5prime 0 3106301 3106498 -1 2911 0.32323232323232326 198 64 "3105451_3106300" +BW25113_2970__3prime yghF__3prime 0 3105254 3105451 -1 350 0.10101010101010101 198 20 "3105451_3106300" +BW25113_2971 yghG 0 3106426 3106836 -1 4543 0.2798053527980535 411 115 "secretin (GspDbeta) OM localization lipoprotein pilotin" +BW25113_2971__5prime yghG__5prime 0 3106837 3107034 -1 1818 0.29292929292929293 198 58 "secretin (GspDbeta) OM localization lipoprotein pilotin" +BW25113_2971__3prime yghG__3prime 0 3106228 3106425 -1 951 0.18686868686868688 198 37 "secretin (GspDbeta) OM localization lipoprotein pilotin" +BW25113_2972 pppA 0 3106902 3107711 -1 5504 0.19382716049382717 810 157 "bifunctional prepilin leader peptidase/ methylase" +BW25113_2972__5prime pppA__5prime 0 3107712 3107909 -1 382 0.06565656565656566 198 13 "bifunctional prepilin leader peptidase/ methylase" +BW25113_2972__3prime pppA__3prime 0 3106704 3106901 -1 701 0.1919191919191919 198 38 "bifunctional prepilin leader peptidase/ methylase" +3107736_3107904 3107736_3107904 0 3107737 3107904 1 266 0.05952380952380952 168 10 "3107736_3107904" +3107736_3107904__5prime 3107736_3107904__5prime 0 3107539 3107736 1 103 0.020202020202020204 198 4 "3107736_3107904" +3107736_3107904__3prime 3107736_3107904__3prime 0 3107905 3108102 1 755 0.12121212121212122 198 24 "3107736_3107904" +BW25113_4466 yghJ 0 3107909 3112471 -1 13635 0.12075388998465922 4563 551 "DUF4092 family putative lipoprotein peptidase" +BW25113_4466__5prime yghJ__5prime 0 3112472 3112669 -1 201 0.07575757575757576 198 15 "DUF4092 family putative lipoprotein peptidase" +BW25113_4466__3prime yghJ__3prime 0 3107711 3107908 -1 382 0.06565656565656566 198 13 "DUF4092 family putative lipoprotein peptidase" +3112919_3112946 3112919_3112946 0 3112920 3112946 1 99 0.18518518518518517 27 5 "3112919_3112946" +3112919_3112946__5prime 3112919_3112946__5prime 0 3112722 3112919 1 217 0.07575757575757576 198 15 "3112919_3112946" +3112919_3112946__3prime 3112919_3112946__3prime 0 3112947 3113144 1 3128 0.3333333333333333 198 66 "3112919_3112946" +BW25113_2975 glcA 0 3112956 3114638 -1 18638 0.3048128342245989 1683 513 "glycolate transporter" +BW25113_2975__5prime glcA__5prime 0 3114639 3114836 -1 4563 0.5 198 99 "glycolate transporter" +BW25113_2975__3prime glcA__3prime 0 3112758 3112955 -1 238 0.0707070707070707 198 14 "glycolate transporter" +BW25113_2976 glcB 0 3114993 3117164 -1 7093 0.13766114180478822 2172 299 "malate synthase G" +BW25113_2976__5prime glcB__5prime 0 3117165 3117362 -1 73 0.020202020202020204 198 4 "malate synthase G" +BW25113_2976__3prime glcB__3prime 0 3114795 3114992 -1 3617 0.3939393939393939 198 78 "malate synthase G" +BW25113_2977 glcG 0 3117186 3117590 -1 454 0.05925925925925926 405 24 "DUF336 family protein" +BW25113_2977__5prime glcG__5prime 0 3117591 3117788 -1 53 0.025252525252525252 198 5 "DUF336 family protein" +BW25113_2977__3prime glcG__3prime 0 3116988 3117185 -1 334 0.0707070707070707 198 14 "DUF336 family protein" +BW25113_4467 glcF 0 3117595 3118818 -1 2284 0.10375816993464053 1224 127 "glycolate oxidase 4Fe-4S iron-sulfur cluster subunit" +BW25113_4467__5prime glcF__5prime 0 3118819 3119016 -1 536 0.14646464646464646 198 29 "glycolate oxidase 4Fe-4S iron-sulfur cluster subunit" +BW25113_4467__3prime glcF__3prime 0 3117397 3117594 -1 286 0.06565656565656566 198 13 "glycolate oxidase 4Fe-4S iron-sulfur cluster subunit" +BW25113_4468 glcE 0 3118829 3119881 -1 1900 0.08262108262108261 1053 87 "glycolate oxidase FAD binding subunit" +BW25113_4468__5prime glcE__5prime 0 3119882 3120079 -1 540 0.1414141414141414 198 28 "glycolate oxidase FAD binding subunit" +BW25113_4468__3prime glcE__3prime 0 3118631 3118828 -1 456 0.10101010101010101 198 20 "glycolate oxidase FAD binding subunit" +BW25113_2979 glcD 0 3119881 3121380 -1 3673 0.11333333333333333 1500 170 "glycolate oxidase subunit and FAD-linked" +BW25113_2979__5prime glcD__5prime 0 3121381 3121578 -1 401 0.08585858585858586 198 17 "glycolate oxidase subunit and FAD-linked" +BW25113_2979__3prime glcD__3prime 0 3119683 3119880 -1 201 0.03535353535353535 198 7 "glycolate oxidase subunit and FAD-linked" +BW25113_2980 glcC 0 3121631 3122395 1 2151 0.11895424836601307 765 91 "glycolate-inducible glc operon transcriptional repressor; autorepressor" +BW25113_2980__5prime glcC__5prime 0 3121433 3121630 1 178 0.04040404040404041 198 8 "glycolate-inducible glc operon transcriptional repressor; autorepressor" +BW25113_2980__3prime glcC__3prime 0 3122396 3122593 1 779 0.18686868686868688 198 37 "glycolate-inducible glc operon transcriptional repressor; autorepressor" +BW25113_2981 yghO 0 3122402 3123502 -1 2478 0.11716621253405994 1101 129 "3122401_3123502" +BW25113_2981__5prime yghO__5prime 0 3123503 3123700 -1 638 0.24242424242424243 198 48 "3122401_3123502" +BW25113_2981__3prime yghO__3prime 0 3122204 3122401 -1 436 0.10606060606060606 198 21 "3122401_3123502" +BW25113_2982 insH1 0 3123537 3124553 1 2194 0.17895771878072764 1017 182 "IS5 transposase and trans-activator" +BW25113_2982__5prime insH1__5prime 0 3123339 3123536 1 198 0.10101010101010101 198 20 "IS5 transposase and trans-activator" +BW25113_2982__3prime insH1__3prime 0 3124554 3124751 1 90 0.0707070707070707 198 14 "IS5 transposase and trans-activator" +BW25113_2983 yghQ 0 3124700 3125767 -1 1888 0.0852059925093633 1068 91 "putative inner membrane polysaccharide flippase" +BW25113_2983__5prime yghQ__5prime 0 3125768 3125965 -1 161 0.045454545454545456 198 9 "putative inner membrane polysaccharide flippase" +BW25113_2983__3prime yghQ__3prime 0 3124502 3124699 -1 239 0.1414141414141414 198 28 "putative inner membrane polysaccharide flippase" +BW25113_2984 yghR 0 3125813 3126571 -1 1672 0.09354413702239789 759 71 "putative ATP-binding protein" +BW25113_2984__5prime yghR__5prime 0 3126572 3126769 -1 508 0.08080808080808081 198 16 "putative ATP-binding protein" +BW25113_2984__3prime yghR__3prime 0 3125615 3125812 -1 365 0.0707070707070707 198 14 "putative ATP-binding protein" +BW25113_2985 yghS 0 3126603 3127316 -1 3935 0.20588235294117646 714 147 "putative ATP-binding protein" +BW25113_2985__5prime yghS__5prime 0 3127317 3127514 -1 357 0.13636363636363635 198 27 "putative ATP-binding protein" +BW25113_2985__3prime yghS__3prime 0 3126405 3126602 -1 888 0.11616161616161616 198 23 "putative ATP-binding protein" +BW25113_2986 yghT 0 3127490 3128182 1 6742 0.22077922077922077 693 153 "putative ATP-binding protein" +BW25113_2986__5prime yghT__5prime 0 3127292 3127489 1 315 0.1414141414141414 198 28 "putative ATP-binding protein" +BW25113_2986__3prime yghT__3prime 0 3128183 3128380 1 971 0.18181818181818182 198 36 "putative ATP-binding protein" +BW25113_2987 pitB 0 3128231 3129730 -1 8675 0.20066666666666666 1500 301 "phosphate transporter" +BW25113_2987__5prime pitB__5prime 0 3129731 3129928 -1 215 0.09090909090909091 198 18 "phosphate transporter" +BW25113_2987__3prime pitB__3prime 0 3128033 3128230 -1 610 0.14646464646464646 198 29 "phosphate transporter" +BW25113_2988 gss 0 3130022 3131881 -1 7277 0.1532258064516129 1860 285 "fused glutathionylspermidine amidase/glutathionylspermidine synthetase" +BW25113_2988__5prime gss__5prime 0 3131882 3132079 -1 736 0.13636363636363635 198 27 "fused glutathionylspermidine amidase/glutathionylspermidine synthetase" +BW25113_2988__3prime gss__3prime 0 3129824 3130021 -1 674 0.15656565656565657 198 31 "fused glutathionylspermidine amidase/glutathionylspermidine synthetase" +3130145_3131340 3130145_3131340 0 3130146 3131340 1 4211 0.1581589958158996 1195 189 "3130145_3131340" +3130145_3131340__5prime 3130145_3131340__5prime 0 3129948 3130145 1 2735 0.3383838383838384 198 67 "3130145_3131340" +3130145_3131340__3prime 3130145_3131340__3prime 0 3131341 3131538 1 326 0.07575757575757576 198 15 "3130145_3131340" +BW25113_2989 yghU 0 3132086 3132952 1 1561 0.07958477508650519 867 69 "putative S-transferase" +BW25113_2989__5prime yghU__5prime 0 3131888 3132085 1 736 0.13636363636363635 198 27 "putative S-transferase" +BW25113_2989__3prime yghU__3prime 0 3132953 3133150 1 777 0.12121212121212122 198 24 "putative S-transferase" +3132979_3133062 3132979_3133062 0 3132980 3133062 1 140 0.12048192771084337 83 10 "3132979_3133062" +3132979_3133062__5prime 3132979_3133062__5prime 0 3132782 3132979 1 707 0.1111111111111111 198 22 "3132979_3133062" +3132979_3133062__3prime 3132979_3133062__3prime 0 3133063 3133260 1 818 0.1717171717171717 198 34 "3132979_3133062" +BW25113_2990 hybG 0 3133075 3133323 -1 937 0.1606425702811245 249 40 "hydrogenase 2 accessory protein" +BW25113_2990__5prime hybG__5prime 0 3133324 3133521 -1 242 0.11616161616161616 198 23 "hydrogenase 2 accessory protein" +BW25113_2990__3prime hybG__3prime 0 3132877 3133074 -1 561 0.1111111111111111 198 22 "hydrogenase 2 accessory protein" +BW25113_2991 hybF 0 3133336 3133677 -1 911 0.15497076023391812 342 53 "protein involved with the maturation of hydrogenases 1 and 2" +BW25113_2991__5prime hybF__5prime 0 3133678 3133875 -1 227 0.08080808080808081 198 16 "protein involved with the maturation of hydrogenases 1 and 2" +BW25113_2991__3prime hybF__3prime 0 3133138 3133335 -1 655 0.1717171717171717 198 34 "protein involved with the maturation of hydrogenases 1 and 2" +BW25113_2992 hybE 0 3133670 3134158 -1 1443 0.10633946830265849 489 52 "hydrogenase 2-specific chaperone" +BW25113_2992__5prime hybE__5prime 0 3134159 3134356 -1 276 0.07575757575757576 198 15 "hydrogenase 2-specific chaperone" +BW25113_2992__3prime hybE__3prime 0 3133472 3133669 -1 710 0.18181818181818182 198 36 "hydrogenase 2-specific chaperone" +BW25113_2993 hybD 0 3134151 3134645 -1 929 0.08686868686868687 495 43 "maturation protease for hydrogenase 2" +BW25113_2993__5prime hybD__5prime 0 3134646 3134843 -1 1258 0.23232323232323232 198 46 "maturation protease for hydrogenase 2" +BW25113_2993__3prime hybD__3prime 0 3133953 3134150 -1 653 0.11616161616161616 198 23 "maturation protease for hydrogenase 2" +BW25113_2994 hybC 0 3134645 3136348 -1 6262 0.1437793427230047 1704 245 "hydrogenase 2 and large subunit" +BW25113_2994__5prime hybC__5prime 0 3136349 3136546 -1 383 0.09090909090909091 198 18 "hydrogenase 2 and large subunit" +BW25113_2994__3prime hybC__3prime 0 3134447 3134644 -1 315 0.07575757575757576 198 15 "hydrogenase 2 and large subunit" +BW25113_2995 hybB 0 3136345 3137523 -1 4317 0.13231552162849872 1179 156 "putative hydrogenase 2 cytochrome b type component" +BW25113_2995__5prime hybB__5prime 0 3137524 3137721 -1 347 0.07575757575757576 198 15 "putative hydrogenase 2 cytochrome b type component" +BW25113_2995__3prime hybB__3prime 0 3136147 3136344 -1 464 0.1414141414141414 198 28 "putative hydrogenase 2 cytochrome b type component" +BW25113_2996 hybA 0 3137513 3138499 -1 2855 0.13069908814589665 987 129 "hydrogenase 2 4Fe-4S ferredoxin-type component" +BW25113_2996__5prime hybA__5prime 0 3138500 3138697 -1 265 0.07575757575757576 198 15 "hydrogenase 2 4Fe-4S ferredoxin-type component" +BW25113_2996__3prime hybA__3prime 0 3137315 3137512 -1 506 0.15151515151515152 198 30 "hydrogenase 2 4Fe-4S ferredoxin-type component" +BW25113_2997 hybO 0 3138502 3139620 -1 3037 0.1260053619302949 1119 141 "hydrogenase 2 and small subunit" +BW25113_2997__5prime hybO__5prime 0 3139621 3139818 -1 94 0.045454545454545456 198 9 "hydrogenase 2 and small subunit" +BW25113_2997__3prime hybO__3prime 0 3138304 3138501 -1 195 0.05555555555555555 198 11 "hydrogenase 2 and small subunit" +BW25113_2998 yghW 0 3139809 3140096 -1 1092 0.14583333333333334 288 42 "DUF2623 family protein" +BW25113_2998__5prime yghW__5prime 0 3140097 3140294 -1 165 0.050505050505050504 198 10 "DUF2623 family protein" +BW25113_2998__3prime yghW__3prime 0 3139611 3139808 -1 94 0.045454545454545456 198 9 "DUF2623 family protein" +BW25113_4658 yghX 0 3140215 3141050 -1 2479 0.12320574162679426 836 103 "3140214_3141050" +BW25113_4658__5prime yghX__5prime 0 3141051 3141248 -1 420 0.09090909090909091 198 18 "3140214_3141050" +BW25113_4658__3prime yghX__3prime 0 3140017 3140214 -1 346 0.08080808080808081 198 16 "3140214_3141050" +BW25113_3001 gpr 0 3141256 3142296 1 2234 0.1239193083573487 1041 129 "L-glyceraldehyde 3-phosphate reductase" +BW25113_3001__5prime gpr__5prime 0 3141058 3141255 1 447 0.10101010101010101 198 20 "L-glyceraldehyde 3-phosphate reductase" +BW25113_3001__3prime gpr__3prime 0 3142297 3142494 1 842 0.1414141414141414 198 28 "L-glyceraldehyde 3-phosphate reductase" +BW25113_3002 yqhA 0 3142336 3142830 -1 1303 0.12323232323232323 495 61 "UPF0114 family putative inner membrane protein" +BW25113_3002__5prime yqhA__5prime 0 3142831 3143028 -1 814 0.14646464646464646 198 29 "UPF0114 family putative inner membrane protein" +BW25113_3002__3prime yqhA__3prime 0 3142138 3142335 -1 668 0.13131313131313133 198 26 "UPF0114 family putative inner membrane protein" +BW25113_3003 yghA 0 3143021 3143905 1 4120 0.12203389830508475 885 108 "putative oxidoreductase" +BW25113_3003__5prime yghA__5prime 0 3142823 3143020 1 848 0.16666666666666666 198 33 "putative oxidoreductase" +BW25113_3003__3prime yghA__3prime 0 3143906 3144103 1 246 0.10101010101010101 198 20 "putative oxidoreductase" +3143912_3144167 3143912_3144167 0 3143913 3144167 1 335 0.11764705882352941 255 30 "3143912_3144167" +3143912_3144167__5prime 3143912_3144167__5prime 0 3143715 3143912 1 1207 0.19696969696969696 198 39 "3143912_3144167" +3143912_3144167__3prime 3143912_3144167__3prime 0 3144168 3144365 1 617 0.09595959595959595 198 19 "3143912_3144167" +BW25113_3005 exbD 0 3144177 3144602 -1 908 0.08450704225352113 426 36 "membrane spanning protein in TonB-ExbB-ExbD complex" +BW25113_3005__5prime exbD__5prime 0 3144603 3144800 -1 246 0.09090909090909091 198 18 "membrane spanning protein in TonB-ExbB-ExbD complex" +BW25113_3005__3prime exbD__3prime 0 3143979 3144176 -1 222 0.11616161616161616 198 23 "membrane spanning protein in TonB-ExbB-ExbD complex" +BW25113_3006 exbB 0 3144609 3145343 -1 1347 0.08707482993197278 735 64 "membrane spanning protein in TonB-ExbB-ExbD complex" +BW25113_3006__5prime exbB__5prime 0 3145344 3145541 -1 342 0.0707070707070707 198 14 "membrane spanning protein in TonB-ExbB-ExbD complex" +BW25113_3006__3prime exbB__3prime 0 3144411 3144608 -1 278 0.08080808080808081 198 16 "membrane spanning protein in TonB-ExbB-ExbD complex" +BW25113_3008 metC 0 3145595 3146782 1 4901 0.13552188552188552 1188 161 "cystathionine beta-lyase and PLP-dependent" +BW25113_3008__5prime metC__5prime 0 3145397 3145594 1 118 0.030303030303030304 198 6 "cystathionine beta-lyase and PLP-dependent" +BW25113_3008__3prime metC__3prime 0 3146783 3146980 1 266 0.0707070707070707 198 14 "cystathionine beta-lyase and PLP-dependent" +BW25113_3009 yghB 0 3146922 3147581 1 1679 0.11666666666666667 660 77 "general envelope maintenance protein; DedA family inner membrane protein" +BW25113_3009__5prime yghB__5prime 0 3146724 3146921 1 254 0.045454545454545456 198 9 "general envelope maintenance protein; DedA family inner membrane protein" +BW25113_3009__3prime yghB__3prime 0 3147582 3147779 1 434 0.13636363636363635 198 27 "general envelope maintenance protein; DedA family inner membrane protein" +BW25113_3010 yqhC 0 3147621 3148577 -1 1557 0.08045977011494253 957 77 "transcriptional activator of yqhD" +BW25113_3010__5prime yqhC__5prime 0 3148578 3148775 -1 146 0.07575757575757576 198 15 "transcriptional activator of yqhD" +BW25113_3010__3prime yqhC__3prime 0 3147423 3147620 -1 314 0.12121212121212122 198 24 "transcriptional activator of yqhD" +BW25113_3011 yqhD 0 3148714 3149877 1 3254 0.10481099656357389 1164 122 "aldehyde reductase and NADPH-dependent" +BW25113_3011__5prime yqhD__5prime 0 3148516 3148713 1 193 0.08585858585858586 198 17 "aldehyde reductase and NADPH-dependent" +BW25113_3011__3prime yqhD__3prime 0 3149878 3150075 1 589 0.16161616161616163 198 32 "aldehyde reductase and NADPH-dependent" +BW25113_3012 dkgA 0 3149982 3150809 1 2634 0.10507246376811594 828 87 "2 and 5-diketo-D-gluconate reductase A" +BW25113_3012__5prime dkgA__5prime 0 3149784 3149981 1 459 0.10101010101010101 198 20 "2 and 5-diketo-D-gluconate reductase A" +BW25113_3012__3prime dkgA__3prime 0 3150810 3151007 1 337 0.1111111111111111 198 22 "2 and 5-diketo-D-gluconate reductase A" +BW25113_3013 yqhG 0 3151009 3151935 1 2611 0.15318230852211434 927 142 "DUF3828 family putative periplasmic protein" +BW25113_3013__5prime yqhG__5prime 0 3150811 3151008 1 337 0.1111111111111111 198 22 "DUF3828 family putative periplasmic protein" +BW25113_3013__3prime yqhG__3prime 0 3151936 3152133 1 317 0.050505050505050504 198 10 "DUF3828 family putative periplasmic protein" +BW25113_3014 yqhH 0 3151986 3152243 1 517 0.10852713178294573 258 28 "outer membrane lipoprotein and Lpp paralog" +BW25113_3014__5prime yqhH__5prime 0 3151788 3151985 1 376 0.10101010101010101 198 20 "outer membrane lipoprotein and Lpp paralog" +BW25113_3014__3prime yqhH__3prime 0 3152244 3152441 1 34 0.020202020202020204 198 4 "outer membrane lipoprotein and Lpp paralog" +BW25113_4469 ygiQ 0 3152286 3154505 -1 5342 0.09234234234234234 2220 205 "Radical SAM superfamily protein" +BW25113_4469__5prime ygiQ__5prime 0 3154506 3154703 -1 218 0.08080808080808081 198 16 "Radical SAM superfamily protein" +BW25113_4469__3prime ygiQ__3prime 0 3152088 3152285 -1 386 0.13131313131313133 198 26 "Radical SAM superfamily protein" +BW25113_3017 ftsP 0 3154616 3156028 -1 4958 0.15145081387119605 1413 214 "septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)" +BW25113_3017__5prime ftsP__5prime 0 3156029 3156226 -1 538 0.0707070707070707 198 14 "septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)" +BW25113_3017__3prime ftsP__3prime 0 3154418 3154615 -1 332 0.09090909090909091 198 18 "septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)" +BW25113_3018 plsC 0 3156103 3156840 -1 54 0.006775067750677507 738 5 "1-acyl-sn-glycerol-3-phosphate acyltransferase" +BW25113_3018__5prime plsC__5prime 0 3156841 3157038 -1 406 0.07575757575757576 198 15 "1-acyl-sn-glycerol-3-phosphate acyltransferase" +BW25113_3018__3prime plsC__3prime 0 3155905 3156102 -1 965 0.12121212121212122 198 24 "1-acyl-sn-glycerol-3-phosphate acyltransferase" +3157002_3157032 3157002_3157032 0 3157003 3157032 1 22 0.06666666666666667 30 2 "3157002_3157032" +3157002_3157032__5prime 3157002_3157032__5prime 0 3156805 3157002 1 426 0.08585858585858586 198 17 "3157002_3157032" +3157002_3157032__3prime 3157002_3157032__3prime 0 3157033 3157230 1 273 0.07575757575757576 198 15 "3157002_3157032" +BW25113_3019 parC 0 3157074 3159332 -1 164 0.004869411243913236 2259 11 "DNA topoisomerase IV and subunit A" +BW25113_3019__5prime parC__5prime 0 3159333 3159530 -1 716 0.08080808080808081 198 16 "DNA topoisomerase IV and subunit A" +BW25113_3019__3prime parC__3prime 0 3156876 3157073 -1 558 0.1111111111111111 198 22 "DNA topoisomerase IV and subunit A" +BW25113_3020 ygiS 0 3159470 3161077 -1 6138 0.14925373134328357 1608 240 "putative inner membrane ABC superfamily transporter permease" +BW25113_3020__5prime ygiS__5prime 0 3161078 3161275 -1 1188 0.21717171717171718 198 43 "putative inner membrane ABC superfamily transporter permease" +BW25113_3020__3prime ygiS__3prime 0 3159272 3159469 -1 405 0.06060606060606061 198 12 "putative inner membrane ABC superfamily transporter permease" +BW25113_3021 mqsA 0 3161210 3161605 -1 1132 0.1414141414141414 396 56 "antitoxin for MqsR toxin; transcriptional repressor" +BW25113_3021__5prime mqsA__5prime 0 3161606 3161803 -1 2954 0.3686868686868687 198 73 "antitoxin for MqsR toxin; transcriptional repressor" +BW25113_3021__3prime mqsA__3prime 0 3161012 3161209 -1 1716 0.25252525252525254 198 50 "antitoxin for MqsR toxin; transcriptional repressor" +BW25113_3022 mqsR 0 3161607 3161903 -1 3539 0.3400673400673401 297 101 "GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor" +BW25113_3022__5prime mqsR__5prime 0 3161904 3162101 -1 215 0.09595959595959595 198 19 "GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor" +BW25113_3022__3prime mqsR__3prime 0 3161409 3161606 -1 366 0.07575757575757576 198 15 "GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor" +BW25113_3023 ygiV 0 3162108 3162590 -1 1623 0.17391304347826086 483 84 "transcriptional repressor for mcbR biofilm gene" +BW25113_3023__5prime ygiV__5prime 0 3162591 3162788 -1 875 0.16161616161616163 198 32 "transcriptional repressor for mcbR biofilm gene" +BW25113_3023__3prime ygiV__3prime 0 3161910 3162107 -1 215 0.09595959595959595 198 19 "transcriptional repressor for mcbR biofilm gene" +BW25113_3024 ygiW 0 3162643 3163035 -1 1663 0.18829516539440203 393 74 "hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein" +BW25113_3024__5prime ygiW__5prime 0 3163036 3163233 -1 286 0.09090909090909091 198 18 "hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein" +BW25113_3024__3prime ygiW__3prime 0 3162445 3162642 -1 370 0.12121212121212122 198 24 "hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein" +BW25113_3025 qseB 0 3163187 3163846 1 2796 0.17575757575757575 660 116 "quorum sensing DNA-binding response regulator in two-component regulatory system with QseC" +BW25113_3025__5prime qseB__5prime 0 3162989 3163186 1 425 0.1414141414141414 198 28 "quorum sensing DNA-binding response regulator in two-component regulatory system with QseC" +BW25113_3025__3prime qseB__3prime 0 3163847 3164044 1 300 0.08080808080808081 198 16 "quorum sensing DNA-binding response regulator in two-component regulatory system with QseC" +BW25113_3026 qseC 0 3163843 3165192 1 3517 0.11851851851851852 1350 160 "quorum sensing sensory histidine kinase in two-component regulatory system with QseB" +BW25113_3026__5prime qseC__5prime 0 3163645 3163842 1 879 0.15656565656565657 198 31 "quorum sensing sensory histidine kinase in two-component regulatory system with QseB" +BW25113_3026__3prime qseC__3prime 0 3165193 3165390 1 2612 0.2222222222222222 198 44 "quorum sensing sensory histidine kinase in two-component regulatory system with QseB" +BW25113_3027 ygiZ 0 3165238 3165570 -1 2014 0.14114114114114115 333 47 "inner membrane protein" +BW25113_3027__5prime ygiZ__5prime 0 3165571 3165768 -1 442 0.10101010101010101 198 20 "inner membrane protein" +BW25113_3027__3prime ygiZ__3prime 0 3165040 3165237 -1 1906 0.26262626262626265 198 52 "inner membrane protein" +BW25113_3028 mdaB 0 3165889 3166470 1 3049 0.16323024054982818 582 95 "NADPH quinone reductase" +BW25113_3028__5prime mdaB__5prime 0 3165691 3165888 1 1329 0.2676767676767677 198 53 "NADPH quinone reductase" +BW25113_3028__3prime mdaB__3prime 0 3166471 3166668 1 555 0.13636363636363635 198 27 "NADPH quinone reductase" +BW25113_3029 ygiN 0 3166501 3166815 1 682 0.12698412698412698 315 40 "quinol monooxygenase" +BW25113_3029__5prime ygiN__5prime 0 3166303 3166500 1 1399 0.22727272727272727 198 45 "quinol monooxygenase" +BW25113_3029__3prime ygiN__3prime 0 3166816 3167013 1 171 0.030303030303030304 198 6 "quinol monooxygenase" +BW25113_3030 parE 0 3166863 3168755 -1 8 0.0005282620179609086 1893 1 "DNA topoisomerase IV and subunit B" +BW25113_3030__5prime parE__5prime 0 3168756 3168953 -1 372 0.08080808080808081 198 16 "DNA topoisomerase IV and subunit B" +BW25113_3030__3prime parE__3prime 0 3166665 3166862 -1 629 0.15151515151515152 198 30 "DNA topoisomerase IV and subunit B" +BW25113_3031 yqiA 0 3168784 3169365 -1 2007 0.11855670103092783 582 69 "acyl CoA esterase" +BW25113_3031__5prime yqiA__5prime 0 3169366 3169563 -1 557 0.12626262626262627 198 25 "acyl CoA esterase" +BW25113_3031__3prime yqiA__3prime 0 3168586 3168783 -1 27 0.010101010101010102 198 2 "acyl CoA esterase" +BW25113_3032 cpdA 0 3169365 3170192 -1 1668 0.11714975845410629 828 97 '"3'' and 5'' cAMP phosphodiesterase"' +BW25113_3032__5prime cpdA__5prime 0 3170193 3170390 -1 178 0.04040404040404041 198 8 '"3'' and 5'' cAMP phosphodiesterase"' +BW25113_3032__3prime cpdA__3prime 0 3169167 3169364 -1 548 0.10606060606060606 198 21 '"3'' and 5'' cAMP phosphodiesterase"' +BW25113_3033 yqiB 0 3170217 3170639 -1 915 0.09929078014184398 423 42 "DUF1249 protein YqiB" +BW25113_3033__5prime yqiB__5prime 0 3170640 3170837 -1 453 0.10606060606060606 198 21 "DUF1249 protein YqiB" +BW25113_3033__3prime yqiB__3prime 0 3170019 3170216 -1 298 0.09595959595959595 198 19 "DUF1249 protein YqiB" +BW25113_3034 nudF 0 3170640 3171269 -1 1299 0.1 630 63 "ADP-ribose pyrophosphatase" +BW25113_3034__5prime nudF__5prime 0 3171270 3171467 -1 700 0.20202020202020202 198 40 "ADP-ribose pyrophosphatase" +BW25113_3034__3prime nudF__3prime 0 3170442 3170639 -1 665 0.1414141414141414 198 28 "ADP-ribose pyrophosphatase" +BW25113_3035 tolC 0 3171474 3172955 1 4726 0.11740890688259109 1482 174 "transport channel" +BW25113_3035__5prime tolC__5prime 0 3171276 3171473 1 683 0.1919191919191919 198 38 "transport channel" +BW25113_3035__3prime tolC__3prime 0 3172956 3173153 1 229 0.06060606060606061 198 12 "transport channel" +BW25113_3037 ygiB 0 3173103 3173774 1 1862 0.11011904761904762 672 74 "DUF1190 family protein" +BW25113_3037__5prime ygiB__5prime 0 3172905 3173102 1 476 0.12626262626262627 198 25 "DUF1190 family protein" +BW25113_3037__3prime ygiB__3prime 0 3173775 3173972 1 899 0.13636363636363635 198 27 "DUF1190 family protein" +BW25113_3038 ygiC 0 3173780 3174940 1 3984 0.11800172265288544 1161 137 "ATP-Grasp family ATPase" +BW25113_3038__5prime ygiC__5prime 0 3173582 3173779 1 783 0.16161616161616163 198 32 "ATP-Grasp family ATPase" +BW25113_3038__3prime ygiC__3prime 0 3174941 3175138 1 1087 0.19696969696969696 198 39 "ATP-Grasp family ATPase" +3174948_3174972 3174948_3174972 0 3174949 3174972 1 334 0.2916666666666667 24 7 "3174948_3174972" +3174948_3174972__5prime 3174948_3174972__5prime 0 3174751 3174948 1 726 0.16666666666666666 198 33 "3174948_3174972" +3174948_3174972__3prime 3174948_3174972__3prime 0 3174973 3175170 1 830 0.17676767676767677 198 35 "3174948_3174972" +BW25113_3039 ygiD 0 3174978 3175766 -1 1978 0.11026615969581749 789 87 "4 and 5-DOPA-extradiol-dioxygenase" +BW25113_3039__5prime ygiD__5prime 0 3175767 3175964 -1 391 0.08080808080808081 198 16 "4 and 5-DOPA-extradiol-dioxygenase" +BW25113_3039__3prime ygiD__3prime 0 3174780 3174977 -1 944 0.17676767676767677 198 35 "4 and 5-DOPA-extradiol-dioxygenase" +BW25113_3040 zupT 0 3175909 3176682 1 3714 0.18992248062015504 774 147 "zinc transporter" +BW25113_3040__5prime zupT__5prime 0 3175711 3175908 1 397 0.10606060606060606 198 21 "zinc transporter" +BW25113_3040__3prime zupT__3prime 0 3176683 3176880 1 5011 0.4444444444444444 198 88 "zinc transporter" +BW25113_3041 ribB 0 3177172 3177825 -1 1140 0.0382262996941896 654 25 "3 and 4-dihydroxy-2-butanone-4-phosphate synthase" +BW25113_3041__5prime ribB__5prime 0 3177826 3178023 -1 44 0.020202020202020204 198 4 "3 and 4-dihydroxy-2-butanone-4-phosphate synthase" +BW25113_3041__3prime ribB__3prime 0 3176974 3177171 -1 141 0.050505050505050504 198 10 "3 and 4-dihydroxy-2-butanone-4-phosphate synthase" +BW25113_3042 yqiC 0 3178199 3178489 1 1320 0.21649484536082475 291 63 "BMFP family putative fusogenic protein" +BW25113_3042__5prime yqiC__5prime 0 3178001 3178198 1 316 0.10606060606060606 198 21 "BMFP family putative fusogenic protein" +BW25113_3042__3prime yqiC__3prime 0 3178490 3178687 1 464 0.10101010101010101 198 20 "BMFP family putative fusogenic protein" +BW25113_3043 ygiL 0 3178773 3179324 1 8173 0.35144927536231885 552 194 "putative fimbrial-like adhesin protein" +BW25113_3043__5prime ygiL__5prime 0 3178575 3178772 1 0 0.0 198 0 "putative fimbrial-like adhesin protein" +BW25113_3043__3prime ygiL__3prime 0 3179325 3179522 1 502 0.13636363636363635 198 27 "putative fimbrial-like adhesin protein" +BW25113_3046 yqiG 0 3179420 3183224 1 44056 0.33718791064388964 3805 1283 "3179419_3183224" +BW25113_3046__5prime yqiG__5prime 0 3179222 3179419 1 1922 0.2727272727272727 198 54 "3179419_3183224" +BW25113_3046__3prime yqiG__3prime 0 3183225 3183422 1 5380 0.5050505050505051 198 100 "3179419_3183224" +BW25113_3044 insC1 0 3179546 3179911 1 1703 0.2814207650273224 366 103 "IS2 repressor TnpA" +BW25113_3044__5prime insC1__5prime 0 3179348 3179545 1 413 0.1414141414141414 198 28 "IS2 repressor TnpA" +BW25113_3044__3prime insC1__3prime 0 3179912 3180109 1 436 0.21717171717171718 198 43 "IS2 repressor TnpA" +BW25113_3045 insD1 0 3179869 3180774 1 3384 0.24944812362030905 906 226 "IS2 transposase TnpB" +BW25113_3045__5prime insD1__5prime 0 3179671 3179868 1 367 0.1919191919191919 198 38 "IS2 transposase TnpB" +BW25113_3045__3prime insD1__3prime 0 3180775 3180972 1 1964 0.3838383838383838 198 76 "IS2 transposase TnpB" +BW25113_3047 yqiH 0 3183240 3183989 1 8614 0.27066666666666667 750 203 "putative periplasmic pilin chaperone" +BW25113_3047__5prime yqiH__5prime 0 3183042 3183239 1 3493 0.4292929292929293 198 85 "putative periplasmic pilin chaperone" +BW25113_3047__3prime yqiH__3prime 0 3183990 3184187 1 1333 0.18686868686868688 198 37 "putative periplasmic pilin chaperone" +BW25113_3048 yqiI 0 3183991 3185055 1 14698 0.3305164319248826 1065 352 "fimbrial protein" +BW25113_3048__5prime yqiI__5prime 0 3183793 3183990 1 1262 0.18686868686868688 198 37 "fimbrial protein" +BW25113_3048__3prime yqiI__3prime 0 3185056 3185253 1 2882 0.3686868686868687 198 73 "fimbrial protein" +BW25113_3049 glgS 0 3185098 3185298 -1 2542 0.31343283582089554 201 63 "motility and biofilm regulator" +BW25113_3049__5prime glgS__5prime 0 3185299 3185496 -1 1449 0.32323232323232326 198 64 "motility and biofilm regulator" +BW25113_3049__3prime glgS__3prime 0 3184900 3185097 -1 5110 0.4444444444444444 198 88 "motility and biofilm regulator" +BW25113_3050 yqiJ 0 3185567 3186196 1 10483 0.36507936507936506 630 230 "DUF1449 family inner membrane protein" +BW25113_3050__5prime yqiJ__5prime 0 3185369 3185566 1 1174 0.23232323232323232 198 46 "DUF1449 family inner membrane protein" +BW25113_3050__3prime yqiJ__3prime 0 3186197 3186394 1 2193 0.25757575757575757 198 51 "DUF1449 family inner membrane protein" +3186095_3187426 3186095_3187426 0 3186096 3187426 1 5018 0.13673929376408714 1331 182 "3186095_3187426" +3186095_3187426__5prime 3186095_3187426__5prime 0 3185898 3186095 1 1629 0.2777777777777778 198 55 "3186095_3187426" +3186095_3187426__3prime 3186095_3187426__3prime 0 3187427 3187624 1 509 0.05555555555555555 198 11 "3186095_3187426" +BW25113_3051 yqiK 0 3186223 3187884 1 6024 0.1341756919374248 1662 223 "PHB family membrane protein and function unknown" +BW25113_3051__5prime yqiK__5prime 0 3186025 3186222 1 265 0.10101010101010101 198 20 "PHB family membrane protein and function unknown" +BW25113_3051__3prime yqiK__3prime 0 3187885 3188082 1 60 0.020202020202020204 198 4 "PHB family membrane protein and function unknown" +BW25113_4447 sibD 0 3188082 3188224 -1 153 0.07692307692307693 143 11 "sRNA antisense regulator of toxic IbsD protein" +BW25113_4447__5prime sibD__5prime 0 3188225 3188422 -1 122 0.03535353535353535 198 7 "sRNA antisense regulator of toxic IbsD protein" +BW25113_4447__3prime sibD__3prime 0 3187884 3188081 -1 60 0.020202020202020204 198 4 "sRNA antisense regulator of toxic IbsD protein" +BW25113_4664 ibsD 0 3188125 3188184 1 41 0.03333333333333333 60 2 "toxic membrane protein" +BW25113_4664__5prime ibsD__5prime 0 3187927 3188124 1 44 0.015151515151515152 198 3 "toxic membrane protein" +BW25113_4664__3prime ibsD__3prime 0 3188185 3188382 1 221 0.07575757575757576 198 15 "toxic membrane protein" +BW25113_4611 sibE 0 3188458 3188599 -1 200 0.04225352112676056 142 6 "sRNA antisense regulator of toxic IbsE protein" +BW25113_4611__5prime sibE__5prime 0 3188600 3188797 -1 200 0.06565656565656566 198 13 "sRNA antisense regulator of toxic IbsE protein" +BW25113_4611__3prime sibE__3prime 0 3188260 3188457 -1 59 0.020202020202020204 198 4 "sRNA antisense regulator of toxic IbsE protein" +BW25113_4666 ibsE 0 3188500 3188559 1 145 0.03333333333333333 60 2 "toxic membrane protein" +BW25113_4666__5prime ibsE__5prime 0 3188302 3188499 1 63 0.025252525252525252 198 5 "toxic membrane protein" +BW25113_4666__3prime ibsE__3prime 0 3188560 3188757 1 245 0.07575757575757576 198 15 "toxic membrane protein" +BW25113_3052 hldE 0 3188679 3190112 -1 1733 0.05439330543933055 1434 78 "fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase" +BW25113_3052__5prime hldE__5prime 0 3190113 3190310 -1 721 0.12121212121212122 198 24 "fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase" +BW25113_3052__3prime hldE__3prime 0 3188481 3188678 -1 383 0.08080808080808081 198 16 "fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase" +BW25113_3053 glnE 0 3190160 3193000 -1 7156 0.10594860964449138 2841 301 "fused deadenylyltransferase/adenylyltransferase for glutamine synthetase" +BW25113_3053__5prime glnE__5prime 0 3193001 3193198 -1 436 0.12626262626262627 198 25 "fused deadenylyltransferase/adenylyltransferase for glutamine synthetase" +BW25113_3053__3prime glnE__3prime 0 3189962 3190159 -1 599 0.09595959595959595 198 19 "fused deadenylyltransferase/adenylyltransferase for glutamine synthetase" +BW25113_3054 ygiF 0 3193023 3194324 -1 3399 0.12135176651305683 1302 158 "inorganic triphosphatase" +BW25113_3054__5prime ygiF__5prime 0 3194325 3194522 -1 152 0.030303030303030304 198 6 "inorganic triphosphatase" +BW25113_3054__3prime ygiF__3prime 0 3192825 3193022 -1 669 0.16161616161616163 198 32 "inorganic triphosphatase" +BW25113_3055 ygiM 0 3194566 3195186 1 2779 0.17391304347826086 621 108 "SH3 domain protein" +BW25113_3055__5prime ygiM__5prime 0 3194368 3194565 1 174 0.04040404040404041 198 8 "SH3 domain protein" +BW25113_3055__3prime ygiM__3prime 0 3195187 3195384 1 133 0.030303030303030304 198 6 "SH3 domain protein" +BW25113_3056 cca 0 3195250 3196488 1 331 0.007263922518159807 1239 9 '"fused tRNA nucleotidyl transferase/2''3''-cyclic phosphodiesterase/2''nucleotidase and phosphatase"' +BW25113_3056__5prime cca__5prime 0 3195052 3195249 1 890 0.18181818181818182 198 36 '"fused tRNA nucleotidyl transferase/2''3''-cyclic phosphodiesterase/2''nucleotidase and phosphatase"' +BW25113_3056__3prime cca__3prime 0 3196489 3196686 1 374 0.0707070707070707 198 14 '"fused tRNA nucleotidyl transferase/2''3''-cyclic phosphodiesterase/2''nucleotidase and phosphatase"' +3196502_3196627 3196502_3196627 0 3196503 3196627 1 111 0.064 125 8 "3196502_3196627" +3196502_3196627__5prime 3196502_3196627__5prime 0 3196305 3196502 1 328 0.045454545454545456 198 9 "3196502_3196627" +3196502_3196627__3prime 3196502_3196627__3prime 0 3196628 3196825 1 433 0.07575757575757576 198 15 "3196502_3196627" +BW25113_3057 bacA 0 3196669 3197490 -1 1827 0.12408759124087591 822 102 "undecaprenyl pyrophosphate phosphatase" +BW25113_3057__5prime bacA__5prime 0 3197491 3197688 -1 135 0.045454545454545456 198 9 "undecaprenyl pyrophosphate phosphatase" +BW25113_3057__3prime bacA__3prime 0 3196471 3196668 -1 285 0.050505050505050504 198 10 "undecaprenyl pyrophosphate phosphatase" +BW25113_3058 folB 0 3197580 3197948 -1 53 0.01084010840108401 369 4 '"bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2''-epimerase"' +BW25113_3058__5prime folB__5prime 0 3197949 3198146 -1 628 0.15151515151515152 198 30 '"bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2''-epimerase"' +BW25113_3058__3prime folB__3prime 0 3197382 3197579 -1 358 0.15656565656565657 198 31 '"bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2''-epimerase"' +BW25113_3059 plsY 0 3198053 3198670 1 1791 0.13268608414239483 618 82 "putative glycerol-3-phosphate acyltransferase" +BW25113_3059__5prime plsY__5prime 0 3197855 3198052 1 476 0.10101010101010101 198 20 "putative glycerol-3-phosphate acyltransferase" +BW25113_3059__3prime plsY__3prime 0 3198671 3198868 1 417 0.15656565656565657 198 31 "putative glycerol-3-phosphate acyltransferase" +BW25113_3060 ttdR 0 3198683 3199615 -1 9377 0.3086816720257235 933 288 "transcriptional activator of ttdABT" +BW25113_3060__5prime ttdR__5prime 0 3199616 3199813 -1 1528 0.16161616161616163 198 32 "transcriptional activator of ttdABT" +BW25113_3060__3prime ttdR__3prime 0 3198485 3198682 -1 336 0.08080808080808081 198 16 "transcriptional activator of ttdABT" +BW25113_3061 ttdA 0 3199822 3200733 1 5113 0.20175438596491227 912 184 "L-tartrate dehydratase and alpha subunit" +BW25113_3061__5prime ttdA__5prime 0 3199624 3199821 1 1462 0.15656565656565657 198 31 "L-tartrate dehydratase and alpha subunit" +BW25113_3061__3prime ttdA__3prime 0 3200734 3200931 1 321 0.050505050505050504 198 10 "L-tartrate dehydratase and alpha subunit" +BW25113_3062 ttdB 0 3200730 3201335 1 1857 0.11551155115511551 606 70 "L-tartrate dehydratase and beta subunit" +BW25113_3062__5prime ttdB__5prime 0 3200532 3200729 1 415 0.12121212121212122 198 24 "L-tartrate dehydratase and beta subunit" +BW25113_3062__3prime ttdB__3prime 0 3201336 3201533 1 332 0.09090909090909091 198 18 "L-tartrate dehydratase and beta subunit" +BW25113_3063 ttdT 0 3201383 3202846 1 4047 0.12568306010928962 1464 184 "L-tartrate/succinate antiporte" +BW25113_3063__5prime ttdT__5prime 0 3201185 3201382 1 773 0.16161616161616163 198 32 "L-tartrate/succinate antiporte" +BW25113_3063__3prime ttdT__3prime 0 3202847 3203044 1 304 0.045454545454545456 198 9 "L-tartrate/succinate antiporte" +3202857_3202877 3202857_3202877 0 3202858 3202877 1 0 0.0 20 0 "3202857_3202877" +3202857_3202877__5prime 3202857_3202877__5prime 0 3202660 3202857 1 559 0.1111111111111111 198 22 "3202857_3202877" +3202857_3202877__3prime 3202857_3202877__3prime 0 3202878 3203075 1 269 0.03535353535353535 198 7 "3202857_3202877" +BW25113_3064 tsaD 0 3202889 3203902 -1 269 0.006903353057199211 1014 7 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein" +BW25113_3064__5prime tsaD__5prime 0 3203903 3204100 -1 1455 0.16161616161616163 198 32 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein" +BW25113_3064__3prime tsaD__3prime 0 3202691 3202888 -1 515 0.10101010101010101 198 20 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein" +BW25113_3065 rpsU 0 3204140 3204355 1 15 0.009259259259259259 216 2 "30S ribosomal subunit protein S21" +BW25113_3065__5prime rpsU__5prime 0 3203942 3204139 1 1048 0.13131313131313133 198 26 "30S ribosomal subunit protein S21" +BW25113_3065__3prime rpsU__3prime 0 3204356 3204553 1 0 0.0 198 0 "30S ribosomal subunit protein S21" +BW25113_3066 dnaG 0 3204466 3206211 1 19 0.001145475372279496 1746 2 "DNA primase" +BW25113_3066__5prime dnaG__5prime 0 3204268 3204465 1 15 0.010101010101010102 198 2 "DNA primase" +BW25113_3066__3prime dnaG__3prime 0 3206212 3206409 1 204 0.06565656565656566 198 13 "DNA primase" +BW25113_3067 rpoD 0 3206406 3208247 1 0 0.0 1842 0 "RNA polymerase and sigma 70 (sigma D) factor" +BW25113_3067__5prime rpoD__5prime 0 3206208 3206405 1 223 0.07575757575757576 198 15 "RNA polymerase and sigma 70 (sigma D) factor" +BW25113_3067__3prime rpoD__3prime 0 3208248 3208445 1 656 0.16161616161616163 198 32 "RNA polymerase and sigma 70 (sigma D) factor" +3208250_3208283 3208250_3208283 0 3208251 3208283 1 114 0.21212121212121213 33 7 "3208250_3208283" +3208250_3208283__5prime 3208250_3208283__5prime 0 3208053 3208250 1 0 0.0 198 0 "3208250_3208283" +3208250_3208283__3prime 3208250_3208283__3prime 0 3208284 3208481 1 687 0.14646464646464646 198 29 "3208250_3208283" +BW25113_3068 mug 0 3208326 3208832 -1 1124 0.10256410256410256 507 52 "G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase" +BW25113_3068__5prime mug__5prime 0 3208833 3209030 -1 425 0.10101010101010101 198 20 "G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase" +BW25113_3068__3prime mug__3prime 0 3208128 3208325 -1 255 0.05555555555555555 198 11 "G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase" +BW25113_3069 ileX 0 3208957 3209032 1 385 0.21052631578947367 76 16 "tRNA-Ile" +BW25113_3069__5prime ileX__5prime 0 3208759 3208956 1 40 0.020202020202020204 198 4 "tRNA-Ile" +BW25113_3069__3prime ileX__3prime 0 3209033 3209230 1 465 0.08080808080808081 198 16 "tRNA-Ile" +BW25113_3070 yqjH 0 3209086 3209850 -1 2351 0.10980392156862745 765 84 "putative siderophore interacting protein" +BW25113_3070__5prime yqjH__5prime 0 3209851 3210048 -1 184 0.05555555555555555 198 11 "putative siderophore interacting protein" +BW25113_3070__3prime yqjH__3prime 0 3208888 3209085 -1 385 0.08080808080808081 198 16 "putative siderophore interacting protein" +3209959_3210037 3209959_3210037 0 3209960 3210037 1 142 0.1282051282051282 78 10 "3209959_3210037" +3209959_3210037__5prime 3209959_3210037__5prime 0 3209762 3209959 1 210 0.06565656565656566 198 13 "3209959_3210037" +3209959_3210037__3prime 3209959_3210037__3prime 0 3210038 3210235 1 239 0.06060606060606061 198 12 "3209959_3210037" +BW25113_3071 yqjI 0 3210138 3210761 1 546 0.060897435897435896 624 38 "PadR family putative transcriptional regulator" +BW25113_3071__5prime yqjI__5prime 0 3209940 3210137 1 249 0.07575757575757576 198 15 "PadR family putative transcriptional regulator" +BW25113_3071__3prime yqjI__3prime 0 3210762 3210959 1 1138 0.14646464646464646 198 29 "PadR family putative transcriptional regulator" +3210792_3210881 3210792_3210881 0 3210793 3210881 1 293 0.10112359550561797 89 9 "3210792_3210881" +3210792_3210881__5prime 3210792_3210881__5prime 0 3210595 3210792 1 233 0.07575757575757576 198 15 "3210792_3210881" +3210792_3210881__3prime 3210792_3210881__3prime 0 3210882 3211079 1 1300 0.2222222222222222 198 44 "3210792_3210881" +BW25113_3072 aer 0 3210915 3212435 -1 5094 0.14661406969099278 1521 223 "fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component" +BW25113_3072__5prime aer__5prime 0 3212436 3212633 -1 42 0.010101010101010102 198 2 "fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component" +BW25113_3072__3prime aer__3prime 0 3210717 3210914 -1 596 0.11616161616161616 198 23 "fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component" +BW25113_3073 patA 0 3212853 3214232 1 3963 0.10072463768115943 1380 139 "putrescine:2-oxoglutaric acid aminotransferase and PLP-dependent" +BW25113_3073__5prime patA__5prime 0 3212655 3212852 1 115 0.025252525252525252 198 5 "putrescine:2-oxoglutaric acid aminotransferase and PLP-dependent" +BW25113_3073__3prime patA__3prime 0 3214233 3214430 1 849 0.1414141414141414 198 28 "putrescine:2-oxoglutaric acid aminotransferase and PLP-dependent" +3214238_3214269 3214238_3214269 0 3214239 3214269 1 109 0.12903225806451613 31 4 "3214238_3214269" +3214238_3214269__5prime 3214238_3214269__5prime 0 3214041 3214238 1 1305 0.12121212121212122 198 24 "3214238_3214269" +3214238_3214269__3prime 3214238_3214269__3prime 0 3214270 3214467 1 990 0.16666666666666666 198 33 "3214238_3214269" +BW25113_3074 ygjH 0 3214274 3214606 -1 1132 0.11411411411411411 333 38 "putative tRNA binding protein; putative tRNA corner chaperone" +BW25113_3074__5prime ygjH__5prime 0 3214607 3214804 -1 104 0.030303030303030304 198 6 "putative tRNA binding protein; putative tRNA corner chaperone" +BW25113_3074__3prime ygjH__3prime 0 3214076 3214273 -1 1414 0.1414141414141414 198 28 "putative tRNA binding protein; putative tRNA corner chaperone" +BW25113_3075 ebgR 0 3214825 3215808 1 1569 0.07621951219512195 984 75 "transcriptional repressor" +BW25113_3075__5prime ebgR__5prime 0 3214627 3214824 1 104 0.030303030303030304 198 6 "transcriptional repressor" +BW25113_3075__3prime ebgR__3prime 0 3215809 3216006 1 172 0.04040404040404041 198 8 "transcriptional repressor" +BW25113_3076 ebgA 0 3215992 3219084 1 7632 0.11509860976398319 3093 356 "evolved beta-D-galactosidase and alpha subunit" +BW25113_3076__5prime ebgA__5prime 0 3215794 3215991 1 156 0.030303030303030304 198 6 "evolved beta-D-galactosidase and alpha subunit" +BW25113_3076__3prime ebgA__3prime 0 3219085 3219282 1 6751 0.5 198 99 "evolved beta-D-galactosidase and alpha subunit" +BW25113_3077 ebgC 0 3219081 3219530 1 9057 0.4088888888888889 450 184 "evolved beta-D-galactosidase and beta subunit; cupin superfamily" +BW25113_3077__5prime ebgC__5prime 0 3218883 3219080 1 575 0.08585858585858586 198 17 "evolved beta-D-galactosidase and beta subunit; cupin superfamily" +BW25113_3077__3prime ebgC__3prime 0 3219531 3219728 1 3315 0.35353535353535354 198 70 "evolved beta-D-galactosidase and beta subunit; cupin superfamily" +BW25113_3078 ygjI 0 3219593 3221026 1 16995 0.31311018131101814 1434 449 "putative transporter" +BW25113_3078__5prime ygjI__5prime 0 3219395 3219592 1 3651 0.3939393939393939 198 78 "putative transporter" +BW25113_3078__3prime ygjI__3prime 0 3221027 3221224 1 1860 0.3181818181818182 198 63 "putative transporter" +BW25113_3079 ygjJ 0 3221160 3222230 1 9453 0.23622782446311857 1071 253 "putative periplasmic protein" +BW25113_3079__5prime ygjJ__5prime 0 3220962 3221159 1 1049 0.2474747474747475 198 49 "putative periplasmic protein" +BW25113_3079__3prime ygjJ__3prime 0 3222231 3222428 1 176 0.07575757575757576 198 15 "putative periplasmic protein" +BW25113_3080 ygjK 0 3222247 3224598 1 6222 0.11224489795918367 2352 264 "alpha-glucosidase" +BW25113_3080__5prime ygjK__5prime 0 3222049 3222246 1 481 0.10101010101010101 198 20 "alpha-glucosidase" +BW25113_3080__3prime ygjK__3prime 0 3224599 3224796 1 429 0.12626262626262627 198 25 "alpha-glucosidase" +3224610_3224893 3224610_3224893 0 3224611 3224893 1 575 0.12014134275618374 283 34 "3224610_3224893" +3224610_3224893__5prime 3224610_3224893__5prime 0 3224413 3224610 1 512 0.12626262626262627 198 25 "3224610_3224893" +3224610_3224893__3prime 3224610_3224893__3prime 0 3224894 3225091 1 396 0.11616161616161616 198 23 "3224610_3224893" +BW25113_3081 fadH 0 3225024 3227042 1 5005 0.09361069836552749 2019 189 "2 and 4-dienoyl-CoA reductase and NADH and FMN-linked" +BW25113_3081__5prime fadH__5prime 0 3224826 3225023 1 503 0.1414141414141414 198 28 "2 and 4-dienoyl-CoA reductase and NADH and FMN-linked" +BW25113_3081__3prime fadH__3prime 0 3227043 3227240 1 151 0.030303030303030304 198 6 "2 and 4-dienoyl-CoA reductase and NADH and FMN-linked" +3227057_3227078 3227057_3227078 0 3227058 3227078 1 0 0.0 21 0 "3227057_3227078" +3227057_3227078__5prime 3227057_3227078__5prime 0 3226860 3227057 1 620 0.13636363636363635 198 27 "3227057_3227078" +3227057_3227078__3prime 3227057_3227078__3prime 0 3227079 3227276 1 117 0.025252525252525252 198 5 "3227057_3227078" +BW25113_3082 higA 0 3227087 3227503 -1 117 0.011990407673860911 417 5 "antitoxinof the HigB-HigA toxin-antitoxin system" +BW25113_3082__5prime higA__5prime 0 3227504 3227701 -1 587 0.1414141414141414 198 28 "antitoxinof the HigB-HigA toxin-antitoxin system" +BW25113_3082__3prime higA__3prime 0 3226889 3227086 -1 465 0.09090909090909091 198 18 "antitoxinof the HigB-HigA toxin-antitoxin system" +BW25113_3083 higB 0 3227500 3227814 -1 955 0.1619047619047619 315 51 "mRNA interferase toxin of the HigB-HigA toxin-antitoxin system" +BW25113_3083__5prime higB__5prime 0 3227815 3228012 -1 421 0.06565656565656566 198 13 "mRNA interferase toxin of the HigB-HigA toxin-antitoxin system" +BW25113_3083__3prime higB__3prime 0 3227302 3227499 -1 0 0.0 198 0 "mRNA interferase toxin of the HigB-HigA toxin-antitoxin system" +3227996_3228082 3227996_3228082 0 3227997 3228082 1 94 0.10465116279069768 86 9 "3227996_3228082" +3227996_3228082__5prime 3227996_3228082__5prime 0 3227799 3227996 1 505 0.10101010101010101 198 20 "3227996_3228082" +3227996_3228082__3prime 3227996_3228082__3prime 0 3228083 3228280 1 683 0.20202020202020202 198 40 "3227996_3228082" +BW25113_3084 rlmG 0 3228098 3229234 -1 3683 0.13720316622691292 1137 156 "23S rRNA m(2)G1835 methyltransferase and SAM-dependent" +BW25113_3084__5prime rlmG__5prime 0 3229235 3229432 -1 634 0.1414141414141414 198 28 "23S rRNA m(2)G1835 methyltransferase and SAM-dependent" +BW25113_3084__3prime rlmG__3prime 0 3227900 3228097 -1 618 0.1414141414141414 198 28 "23S rRNA m(2)G1835 methyltransferase and SAM-dependent" +BW25113_3085 ygjP 0 3229319 3229822 1 1289 0.09523809523809523 504 48 "putative metal dependent hydrolase" +BW25113_3085__5prime ygjP__5prime 0 3229121 3229318 1 385 0.11616161616161616 198 23 "putative metal dependent hydrolase" +BW25113_3085__3prime ygjP__3prime 0 3229823 3230020 1 264 0.08585858585858586 198 17 "putative metal dependent hydrolase" +BW25113_3086 ygjQ 0 3229899 3230591 1 1437 0.10101010101010101 693 70 "DUF218 superfamily protein" +BW25113_3086__5prime ygjQ__5prime 0 3229701 3229898 1 373 0.07575757575757576 198 15 "DUF218 superfamily protein" +BW25113_3086__3prime ygjQ__3prime 0 3230592 3230789 1 1014 0.13131313131313133 198 26 "DUF218 superfamily protein" +BW25113_3087 ygjR 0 3230670 3231656 1 3283 0.1458966565349544 987 144 "putative NAD(P)-dependent dehydrogenase" +BW25113_3087__5prime ygjR__5prime 0 3230472 3230669 1 309 0.08080808080808081 198 16 "putative NAD(P)-dependent dehydrogenase" +BW25113_3087__3prime ygjR__3prime 0 3231657 3231854 1 516 0.12626262626262627 198 25 "putative NAD(P)-dependent dehydrogenase" +BW25113_3088 alx 0 3231939 3232904 1 3224 0.12629399585921325 966 122 "putative membrane-bound redox modulator" +BW25113_3088__5prime alx__5prime 0 3231741 3231938 1 443 0.12121212121212122 198 24 "putative membrane-bound redox modulator" +BW25113_3088__3prime alx__3prime 0 3232905 3233102 1 958 0.18686868686868688 198 37 "putative membrane-bound redox modulator" +3233022_3233406 3233022_3233406 0 3233023 3233406 1 1417 0.12760416666666666 384 49 "3233022_3233406" +3233022_3233406__5prime 3233022_3233406__5prime 0 3232825 3233022 1 621 0.15151515151515152 198 30 "3233022_3233406" +3233022_3233406__3prime 3233022_3233406__3prime 0 3233407 3233604 1 885 0.15151515151515152 198 30 "3233022_3233406" +BW25113_3089 sstT 0 3233303 3234547 1 5951 0.16626506024096385 1245 207 "sodium:serine/threonine symporter" +BW25113_3089__5prime sstT__5prime 0 3233105 3233302 1 440 0.12626262626262627 198 25 "sodium:serine/threonine symporter" +BW25113_3089__3prime sstT__3prime 0 3234548 3234745 1 479 0.10101010101010101 198 20 "sodium:serine/threonine symporter" +BW25113_3090 ygjV 0 3234552 3235103 -1 1655 0.12681159420289856 552 70 "Imp-YgjV family inner membrane protein" +BW25113_3090__5prime ygjV__5prime 0 3235104 3235301 -1 234 0.050505050505050504 198 10 "Imp-YgjV family inner membrane protein" +BW25113_3090__3prime ygjV__3prime 0 3234354 3234551 -1 793 0.17676767676767677 198 35 "Imp-YgjV family inner membrane protein" +BW25113_3091 uxaA 0 3235186 3236673 -1 5508 0.12096774193548387 1488 180 "altronate hydrolase" +BW25113_3091__5prime uxaA__5prime 0 3236674 3236871 -1 544 0.0707070707070707 198 14 "altronate hydrolase" +BW25113_3091__3prime uxaA__3prime 0 3234988 3235185 -1 486 0.08585858585858586 198 17 "altronate hydrolase" +BW25113_3092 uxaC 0 3236688 3238100 -1 5771 0.12384996461429583 1413 175 "uronate isomerase" +BW25113_3092__5prime uxaC__5prime 0 3238101 3238298 -1 138 0.045454545454545456 198 9 "uronate isomerase" +BW25113_3092__3prime uxaC__3prime 0 3236490 3236687 -1 1259 0.18686868686868688 198 37 "uronate isomerase" +BW25113_3093 exuT 0 3238463 3239881 1 4736 0.15010570824524314 1419 213 "hexuronate transporter" +BW25113_3093__5prime exuT__5prime 0 3238265 3238462 1 53 0.020202020202020204 198 4 "hexuronate transporter" +BW25113_3093__3prime exuT__3prime 0 3239882 3240079 1 170 0.06565656565656566 198 13 "hexuronate transporter" +BW25113_3094 exuR 0 3240011 3240787 1 2133 0.11068211068211069 777 86 "hexuronate regulon transcriptional repressor; autorepressor" +BW25113_3094__5prime exuR__5prime 0 3239813 3240010 1 266 0.10606060606060606 198 21 "hexuronate regulon transcriptional repressor; autorepressor" +BW25113_3094__3prime exuR__3prime 0 3240788 3240985 1 1053 0.15656565656565657 198 31 "hexuronate regulon transcriptional repressor; autorepressor" +BW25113_3094 exuR 0 3240379 3240524 1 388 0.136986301369863 146 20 "3240378_3240524" +BW25113_3094__5prime exuR__5prime 0 3240181 3240378 1 615 0.1414141414141414 198 28 "3240378_3240524" +BW25113_3094__3prime exuR__3prime 0 3240525 3240722 1 606 0.1111111111111111 198 22 "3240378_3240524" +BW25113_3095 yqjA 0 3241132 3241794 1 2373 0.15987933634992457 663 106 "general envelope maintenance protein; DedA family inner membrane protein" +BW25113_3095__5prime yqjA__5prime 0 3240934 3241131 1 503 0.13636363636363635 198 27 "general envelope maintenance protein; DedA family inner membrane protein" +BW25113_3095__3prime yqjA__3prime 0 3241795 3241992 1 865 0.2222222222222222 198 44 "general envelope maintenance protein; DedA family inner membrane protein" +BW25113_3096 mzrA 0 3241798 3242181 1 1435 0.17708333333333334 384 68 "modulator of EnvZ/OmpR regulon" +BW25113_3096__5prime mzrA__5prime 0 3241600 3241797 1 515 0.15656565656565657 198 31 "modulator of EnvZ/OmpR regulon" +BW25113_3096__3prime mzrA__3prime 0 3242182 3242379 1 630 0.16666666666666666 198 33 "modulator of EnvZ/OmpR regulon" +BW25113_3097 yqjC 0 3242328 3242696 1 847 0.08943089430894309 369 33 "DUF1090 family putative periplasmic protein" +BW25113_3097__5prime yqjC__5prime 0 3242130 3242327 1 782 0.18181818181818182 198 36 "DUF1090 family putative periplasmic protein" +BW25113_3097__3prime yqjC__3prime 0 3242697 3242894 1 444 0.18181818181818182 198 36 "DUF1090 family putative periplasmic protein" +BW25113_3098 yqjD 0 3242734 3243039 1 862 0.16666666666666666 306 51 "membrane-anchored ribosome-binding protein" +BW25113_3098__5prime yqjD__5prime 0 3242536 3242733 1 281 0.0707070707070707 198 14 "membrane-anchored ribosome-binding protein" +BW25113_3098__3prime yqjD__3prime 0 3243040 3243237 1 218 0.06060606060606061 198 12 "membrane-anchored ribosome-binding protein" +BW25113_3099 yqjE 0 3243042 3243446 1 677 0.1111111111111111 405 45 "DUF1469 family inner membrane protein" +BW25113_3099__5prime yqjE__5prime 0 3242844 3243041 1 556 0.13131313131313133 198 26 "DUF1469 family inner membrane protein" +BW25113_3099__3prime yqjE__3prime 0 3243447 3243644 1 580 0.15151515151515152 198 30 "DUF1469 family inner membrane protein" +BW25113_3100 yqjK 0 3243436 3243735 1 1189 0.16333333333333333 300 49 "uncharacterized protein" +BW25113_3100__5prime yqjK__5prime 0 3243238 3243435 1 305 0.1414141414141414 198 28 "uncharacterized protein" +BW25113_3100__3prime yqjK__3prime 0 3243736 3243933 1 0 0.0 198 0 "uncharacterized protein" +BW25113_3101 yqjF 0 3243921 3244313 1 787 0.09414758269720101 393 37 "putative quinol oxidase subunit" +BW25113_3101__5prime yqjF__5prime 0 3243723 3243920 1 0 0.0 198 0 "putative quinol oxidase subunit" +BW25113_3101__3prime yqjF__3prime 0 3244314 3244511 1 284 0.08080808080808081 198 16 "putative quinol oxidase subunit" +BW25113_3102 yqjG 0 3244383 3245369 1 2655 0.12360688956433637 987 122 "putative S-transferase" +BW25113_3102__5prime yqjG__5prime 0 3244185 3244382 1 327 0.08585858585858586 198 17 "putative S-transferase" +BW25113_3102__3prime yqjG__3prime 0 3245370 3245567 1 661 0.14646464646464646 198 29 "putative S-transferase" +3245423_3245521 3245423_3245521 0 3245424 3245521 1 304 0.15306122448979592 98 15 "3245423_3245521" +3245423_3245521__5prime 3245423_3245521__5prime 0 3245226 3245423 1 400 0.1111111111111111 198 22 "3245423_3245521" +3245423_3245521__3prime 3245423_3245521__3prime 0 3245522 3245719 1 380 0.08585858585858586 198 17 "3245423_3245521" +BW25113_3103 yhaH 0 3245663 3246028 1 3341 0.2978142076502732 366 109 "DUF805 family inner membrane protein" +BW25113_3103__5prime yhaH__5prime 0 3245465 3245662 1 539 0.1111111111111111 198 22 "DUF805 family inner membrane protein" +BW25113_3103__3prime yhaH__3prime 0 3246029 3246226 1 428 0.10606060606060606 198 21 "DUF805 family inner membrane protein" +3246041_3246064 3246041_3246064 0 3246042 3246064 1 278 0.2608695652173913 23 6 "3246041_3246064" +3246041_3246064__5prime 3246041_3246064__5prime 0 3245844 3246041 1 2489 0.3787878787878788 198 75 "3246041_3246064" +3246041_3246064__3prime 3246041_3246064__3prime 0 3246065 3246262 1 206 0.09595959595959595 198 19 "3246041_3246064" +BW25113_3104 yhaI 0 3246270 3246626 1 3563 0.30532212885154064 357 109 "DUF805 family inner membrane protein" +BW25113_3104__5prime yhaI__5prime 0 3246072 3246269 1 193 0.09090909090909091 198 18 "DUF805 family inner membrane protein" +BW25113_3104__3prime yhaI__3prime 0 3246627 3246824 1 1587 0.2474747474747475 198 49 "DUF805 family inner membrane protein" +BW25113_3105 yhaJ 0 3246677 3247573 -1 5449 0.17391304347826086 897 156 "LysR family putative transcriptional regulator" +BW25113_3105__5prime yhaJ__5prime 0 3247574 3247771 -1 943 0.21212121212121213 198 42 "LysR family putative transcriptional regulator" +BW25113_3105__3prime yhaJ__3prime 0 3246479 3246676 -1 941 0.15656565656565657 198 31 "LysR family putative transcriptional regulator" +BW25113_3106 yhaK 0 3247678 3248379 1 1503 0.09401709401709402 702 66 "redox-sensitive bicupin" +BW25113_3106__5prime yhaK__5prime 0 3247480 3247677 1 696 0.17676767676767677 198 35 "redox-sensitive bicupin" +BW25113_3106__3prime yhaK__3prime 0 3248380 3248577 1 446 0.10606060606060606 198 21 "redox-sensitive bicupin" +BW25113_3107 yhaL 0 3248402 3248566 1 384 0.12121212121212122 165 20 "uncharacterized protein" +BW25113_3107__5prime yhaL__5prime 0 3248204 3248401 1 360 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_3107__3prime yhaL__3prime 0 3248567 3248764 1 294 0.07575757575757576 198 15 "uncharacterized protein" +3248575_3248678 3248575_3248678 0 3248576 3248678 1 134 0.06796116504854369 103 7 "3248575_3248678" +3248575_3248678__5prime 3248575_3248678__5prime 0 3248378 3248575 1 446 0.10606060606060606 198 21 "3248575_3248678" +3248575_3248678__3prime 3248575_3248678__3prime 0 3248679 3248876 1 364 0.09090909090909091 198 18 "3248575_3248678" +BW25113_4470 yhaM 0 3248700 3250010 -1 2612 0.09458428680396644 1311 124 "putative L-serine dehydratase alpha chain" +BW25113_4470__5prime yhaM__5prime 0 3250011 3250208 -1 276 0.09090909090909091 198 18 "putative L-serine dehydratase alpha chain" +BW25113_4470__3prime yhaM__3prime 0 3248502 3248699 -1 514 0.12121212121212122 198 24 "putative L-serine dehydratase alpha chain" +BW25113_3110 yhaO 0 3250038 3251369 -1 3906 0.13513513513513514 1332 180 "putative transporter" +BW25113_3110__5prime yhaO__5prime 0 3251370 3251567 -1 27 0.015151515151515152 198 3 "putative transporter" +BW25113_3110__3prime yhaO__3prime 0 3249840 3250037 -1 276 0.04040404040404041 198 8 "putative transporter" +BW25113_4471 tdcG 0 3251644 3253008 -1 4903 0.14285714285714285 1365 195 "L-serine dehydratase 3 and anaerobic" +BW25113_4471__5prime tdcG__5prime 0 3253009 3253206 -1 689 0.14646464646464646 198 29 "L-serine dehydratase 3 and anaerobic" +BW25113_4471__3prime tdcG__3prime 0 3251446 3251643 -1 166 0.06060606060606061 198 12 "L-serine dehydratase 3 and anaerobic" +3251866_3252035 3251866_3252035 0 3251867 3252035 1 756 0.2603550295857988 169 44 "3251866_3252035" +3251866_3252035__5prime 3251866_3252035__5prime 0 3251669 3251866 1 961 0.1717171717171717 198 34 "3251866_3252035" +3251866_3252035__3prime 3251866_3252035__3prime 0 3252036 3252233 1 421 0.11616161616161616 198 23 "3251866_3252035" +BW25113_3113 tdcF 0 3253080 3253469 -1 860 0.13333333333333333 390 52 "putative reactive intermediate deaminase" +BW25113_3113__5prime tdcF__5prime 0 3253470 3253667 -1 654 0.11616161616161616 198 23 "putative reactive intermediate deaminase" +BW25113_3113__3prime tdcF__3prime 0 3252882 3253079 -1 436 0.11616161616161616 198 23 "putative reactive intermediate deaminase" +BW25113_3114 tdcE 0 3253483 3255777 -1 15285 0.19041394335511982 2295 437 "pyruvate formate-lyase 4/2-ketobutyrate formate-lyase" +BW25113_3114__5prime tdcE__5prime 0 3255778 3255975 -1 1586 0.30303030303030304 198 60 "pyruvate formate-lyase 4/2-ketobutyrate formate-lyase" +BW25113_3114__3prime tdcE__3prime 0 3253285 3253482 -1 485 0.17676767676767677 198 35 "pyruvate formate-lyase 4/2-ketobutyrate formate-lyase" +BW25113_3115 tdcD 0 3255811 3257019 -1 13752 0.3143093465674111 1209 380 "propionate kinase/acetate kinase C and anaerobic" +BW25113_3115__5prime tdcD__5prime 0 3257020 3257217 -1 3185 0.5151515151515151 198 102 "propionate kinase/acetate kinase C and anaerobic" +BW25113_3115__3prime tdcD__3prime 0 3255613 3255810 -1 6705 0.47474747474747475 198 94 "propionate kinase/acetate kinase C and anaerobic" +BW25113_3116 tdcC 0 3257045 3258376 -1 9276 0.243993993993994 1332 325 "L-threonine/L-serine transporter" +BW25113_3116__5prime tdcC__5prime 0 3258377 3258574 -1 1446 0.20707070707070707 198 41 "L-threonine/L-serine transporter" +BW25113_3116__3prime tdcC__3prime 0 3256847 3257044 -1 3653 0.31313131313131315 198 62 "L-threonine/L-serine transporter" +BW25113_3117 tdcB 0 3258398 3259387 -1 10862 0.302020202020202 990 299 "L-threonine dehydratase and catabolic" +BW25113_3117__5prime tdcB__5prime 0 3259388 3259585 -1 606 0.15656565656565657 198 31 "L-threonine dehydratase and catabolic" +BW25113_3117__3prime tdcB__3prime 0 3258200 3258397 -1 3443 0.4797979797979798 198 95 "L-threonine dehydratase and catabolic" +BW25113_3118 tdcA 0 3259486 3260424 -1 9522 0.329073482428115 939 309 "tdc operon transcriptional activator" +BW25113_3118__5prime tdcA__5prime 0 3260425 3260622 -1 261 0.08080808080808081 198 16 "tdc operon transcriptional activator" +BW25113_3118__3prime tdcA__3prime 0 3259288 3259485 -1 1175 0.2474747474747475 198 49 "tdc operon transcriptional activator" +BW25113_3119 tdcR 0 3260739 3260957 1 214 0.0502283105022831 219 11 "L-threonine dehydratase operon activator protein" +BW25113_3119__5prime tdcR__5prime 0 3260541 3260738 1 0 0.0 198 0 "L-threonine dehydratase operon activator protein" +BW25113_3119__3prime tdcR__3prime 0 3260958 3261155 1 2912 0.36363636363636365 198 72 "L-threonine dehydratase operon activator protein" +BW25113_3120 yhaB 0 3261213 3261752 1 2640 0.18888888888888888 540 102 "uncharacterized protein" +BW25113_3120__5prime yhaB__5prime 0 3261015 3261212 1 3151 0.41414141414141414 198 82 "uncharacterized protein" +BW25113_3120__3prime yhaB__3prime 0 3261753 3261950 1 555 0.21212121212121213 198 42 "uncharacterized protein" +BW25113_3121 yhaC 0 3261774 3262961 1 2304 0.12878787878787878 1188 153 "pentapetide repeats-related protein" +BW25113_3121__5prime yhaC__5prime 0 3261576 3261773 1 488 0.12626262626262627 198 25 "pentapetide repeats-related protein" +BW25113_3121__3prime yhaC__3prime 0 3262962 3263159 1 1443 0.19696969696969696 198 39 "pentapetide repeats-related protein" +3263080_3263178 3263080_3263178 0 3263081 3263178 1 1246 0.2857142857142857 98 28 "3263080_3263178" +3263080_3263178__5prime 3263080_3263178__5prime 0 3262883 3263080 1 1032 0.20202020202020202 198 40 "3263080_3263178" +3263080_3263178__3prime 3263080_3263178__3prime 0 3263179 3263376 1 487 0.1414141414141414 198 28 "3263080_3263178" +BW25113_3123 rnpB 0 3263575 3263951 -1 55 0.013262599469496022 377 5 "RNase P and M1 RNA component" +BW25113_3123__5prime rnpB__5prime 0 3263952 3264149 -1 479 0.1111111111111111 198 22 "RNase P and M1 RNA component" +BW25113_3123__3prime rnpB__3prime 0 3263377 3263574 -1 193 0.06565656565656566 198 13 "RNase P and M1 RNA component" +BW25113_3124 garK 0 3263984 3265129 -1 2796 0.11518324607329843 1146 132 "glycerate kinase I" +BW25113_3124__5prime garK__5prime 0 3265130 3265327 -1 380 0.13131313131313133 198 26 "glycerate kinase I" +BW25113_3124__3prime garK__3prime 0 3263786 3263983 -1 0 0.0 198 0 "glycerate kinase I" +BW25113_3125 garR 0 3265226 3266110 -1 1799 0.1096045197740113 885 97 "tartronate semialdehyde reductase" +BW25113_3125__5prime garR__5prime 0 3266111 3266308 -1 165 0.06060606060606061 198 12 "tartronate semialdehyde reductase" +BW25113_3125__3prime garR__3prime 0 3265028 3265225 -1 200 0.06060606060606061 198 12 "tartronate semialdehyde reductase" +BW25113_3126 garL 0 3266146 3266916 -1 1800 0.0946822308690013 771 73 "alpha-dehydro-beta-deoxy-D-glucarate aldolase" +BW25113_3126__5prime garL__5prime 0 3266917 3267114 -1 238 0.08080808080808081 198 16 "alpha-dehydro-beta-deoxy-D-glucarate aldolase" +BW25113_3126__3prime garL__3prime 0 3265948 3266145 -1 295 0.08585858585858586 198 17 "alpha-dehydro-beta-deoxy-D-glucarate aldolase" +BW25113_3127 garP 0 3266932 3268266 -1 4624 0.13707865168539327 1335 183 "putative (D)-galactarate transporter" +BW25113_3127__5prime garP__5prime 0 3268267 3268464 -1 204 0.0707070707070707 198 14 "putative (D)-galactarate transporter" +BW25113_3127__3prime garP__3prime 0 3266734 3266931 -1 923 0.1919191919191919 198 38 "putative (D)-galactarate transporter" +BW25113_3128 garD 0 3268641 3270212 1 5118 0.12086513994910941 1572 190 "(D)-galactarate dehydrogenase" +BW25113_3128__5prime garD__5prime 0 3268443 3268640 1 680 0.18181818181818182 198 36 "(D)-galactarate dehydrogenase" +BW25113_3128__3prime garD__3prime 0 3270213 3270410 1 1235 0.08080808080808081 198 16 "(D)-galactarate dehydrogenase" +BW25113_3129 prlF 0 3270361 3270696 1 2449 0.17559523809523808 336 59 "antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system" +BW25113_3129__5prime prlF__5prime 0 3270163 3270360 1 188 0.06565656565656566 198 13 "antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system" +BW25113_3129__3prime prlF__3prime 0 3270697 3270894 1 823 0.12626262626262627 198 25 "antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system" +BW25113_3130 yhaV 0 3270696 3271160 1 1284 0.10752688172043011 465 50 "toxin of the SohB(PrlF)-YhaV toxin-antitoxin system" +BW25113_3130__5prime yhaV__5prime 0 3270498 3270695 1 828 0.16666666666666666 198 33 "toxin of the SohB(PrlF)-YhaV toxin-antitoxin system" +BW25113_3130__3prime yhaV__3prime 0 3271161 3271358 1 869 0.15151515151515152 198 30 "toxin of the SohB(PrlF)-YhaV toxin-antitoxin system" +3271177_3271206 3271177_3271206 0 3271178 3271206 1 6 0.034482758620689655 29 1 "3271177_3271206" +3271177_3271206__5prime 3271177_3271206__5prime 0 3270980 3271177 1 420 0.09595959595959595 198 19 "3271177_3271206" +3271177_3271206__3prime 3271177_3271206__3prime 0 3271207 3271404 1 755 0.15151515151515152 198 30 "3271177_3271206" +BW25113_3131 agaR 0 3271215 3272024 -1 2927 0.1506172839506173 810 122 "transcriptional repressor of the aga regulon" +BW25113_3131__5prime agaR__5prime 0 3272025 3272222 -1 54 0.025252525252525252 198 5 "transcriptional repressor of the aga regulon" +BW25113_3131__3prime agaR__3prime 0 3271017 3271214 -1 373 0.08080808080808081 198 16 "transcriptional repressor of the aga regulon" +BW25113_3132 kbaZ 0 3272273 3273553 1 3645 0.1209992193598751 1281 155 "tagatose 6-phosphate aldolase 1 and kbaZ subunit" +BW25113_3132__5prime kbaZ__5prime 0 3272075 3272272 1 54 0.025252525252525252 198 5 "tagatose 6-phosphate aldolase 1 and kbaZ subunit" +BW25113_3132__3prime kbaZ__3prime 0 3273554 3273751 1 317 0.09595959595959595 198 19 "tagatose 6-phosphate aldolase 1 and kbaZ subunit" +BW25113_3133 agaV 0 3273576 3274049 1 861 0.0949367088607595 474 45 "N-acetylgalactosamine-specific enzyme IIB component of PTS" +BW25113_3133__5prime agaV__5prime 0 3273378 3273575 1 1075 0.16666666666666666 198 33 "N-acetylgalactosamine-specific enzyme IIB component of PTS" +BW25113_3133__3prime agaV__3prime 0 3274050 3274247 1 894 0.16666666666666666 198 33 "N-acetylgalactosamine-specific enzyme IIB component of PTS" +BW25113_3134 agaW 0 3274060 3274434 1 1319 0.14666666666666667 375 55 "3274059_3274434" +BW25113_3134__5prime agaW__5prime 0 3273862 3274059 1 230 0.1111111111111111 198 22 "3274059_3274434" +BW25113_3134__3prime agaW__3prime 0 3274435 3274632 1 329 0.08585858585858586 198 17 "3274059_3274434" +BW25113_3135 agaA 0 3274430 3274984 1 1441 0.13333333333333333 555 74 "3274429_3274984" +BW25113_3135__5prime agaA__5prime 0 3274232 3274429 1 632 0.14646464646464646 198 29 "3274429_3274984" +BW25113_3135__3prime agaA__3prime 0 3274985 3275182 1 280 0.08080808080808081 198 16 "3274429_3274984" +3275060_3275142 3275060_3275142 0 3275061 3275142 1 175 0.08536585365853659 82 7 "3275060_3275142" +3275060_3275142__5prime 3275060_3275142__5prime 0 3274863 3275060 1 278 0.10606060606060606 198 21 "3275060_3275142" +3275060_3275142__3prime 3275060_3275142__3prime 0 3275143 3275340 1 112 0.03535353535353535 198 7 "3275060_3275142" +BW25113_3136 agaS 0 3275335 3276489 1 1784 0.07965367965367966 1155 92 "tagatose-6-phosphate ketose/aldose isomerase" +BW25113_3136__5prime agaS__5prime 0 3275137 3275334 1 112 0.03535353535353535 198 7 "tagatose-6-phosphate ketose/aldose isomerase" +BW25113_3136__3prime agaS__3prime 0 3276490 3276687 1 379 0.09090909090909091 198 18 "tagatose-6-phosphate ketose/aldose isomerase" +BW25113_3137 kbaY 0 3276502 3277362 1 6786 0.21138211382113822 861 182 "tagatose 6-phosphate aldolase 1 and kbaY subunit" +BW25113_3137__5prime kbaY__5prime 0 3276304 3276501 1 215 0.08080808080808081 198 16 "tagatose 6-phosphate aldolase 1 and kbaY subunit" +BW25113_3137__3prime kbaY__3prime 0 3277363 3277560 1 529 0.09090909090909091 198 18 "tagatose 6-phosphate aldolase 1 and kbaY subunit" +BW25113_3138 agaB 0 3277529 3278005 1 4116 0.24528301886792453 477 117 "N-acetylgalactosamine-specific enzyme IIB component of PTS" +BW25113_3138__5prime agaB__5prime 0 3277331 3277528 1 473 0.08585858585858586 198 17 "N-acetylgalactosamine-specific enzyme IIB component of PTS" +BW25113_3138__3prime agaB__3prime 0 3278006 3278203 1 1046 0.25757575757575757 198 51 "N-acetylgalactosamine-specific enzyme IIB component of PTS" +BW25113_3139 agaC 0 3278044 3278847 1 7308 0.21144278606965175 804 170 "N-acetylgalactosamine-specific enzyme IIC component of PTS" +BW25113_3139__5prime agaC__5prime 0 3277846 3278043 1 505 0.12121212121212122 198 24 "N-acetylgalactosamine-specific enzyme IIC component of PTS" +BW25113_3139__3prime agaC__3prime 0 3278848 3279045 1 384 0.13131313131313133 198 26 "N-acetylgalactosamine-specific enzyme IIC component of PTS" +BW25113_3140 agaD 0 3278837 3279628 1 2289 0.13005050505050506 792 103 "N-acetylgalactosamine-specific enzyme IID component of PTS" +BW25113_3140__5prime agaD__5prime 0 3278639 3278836 1 392 0.07575757575757576 198 15 "N-acetylgalactosamine-specific enzyme IID component of PTS" +BW25113_3140__3prime agaD__3prime 0 3279629 3279826 1 718 0.2222222222222222 198 44 "N-acetylgalactosamine-specific enzyme IID component of PTS" +BW25113_3141 agaI 0 3279629 3280384 1 4070 0.21428571428571427 756 162 "galactosamine-6-phosphate isomerase" +BW25113_3141__5prime agaI__5prime 0 3279431 3279628 1 1109 0.16161616161616163 198 32 "galactosamine-6-phosphate isomerase" +BW25113_3141__3prime agaI__3prime 0 3280385 3280582 1 228 0.06565656565656566 198 13 "galactosamine-6-phosphate isomerase" +BW25113_3142 yraH 0 3280785 3281369 1 5893 0.3316239316239316 585 194 "putative fimbrial-like adhesin protein" +BW25113_3142__5prime yraH__5prime 0 3280587 3280784 1 33 0.020202020202020204 198 4 "putative fimbrial-like adhesin protein" +BW25113_3142__3prime yraH__3prime 0 3281370 3281567 1 5469 0.5050505050505051 198 100 "putative fimbrial-like adhesin protein" +BW25113_3143 yraI 0 3281449 3282144 1 10546 0.3160919540229885 696 220 "putative periplasmic pilin chaperone" +BW25113_3143__5prime yraI__5prime 0 3281251 3281448 1 3072 0.5303030303030303 198 105 "putative periplasmic pilin chaperone" +BW25113_3143__3prime yraI__3prime 0 3282145 3282342 1 1992 0.3484848484848485 198 69 "putative periplasmic pilin chaperone" +BW25113_3144 yraJ 0 3282173 3284689 1 14472 0.21533571712355978 2517 542 "putative outer membrane protein" +BW25113_3144__5prime yraJ__5prime 0 3281975 3282172 1 778 0.20202020202020202 198 40 "putative outer membrane protein" +BW25113_3144__3prime yraJ__3prime 0 3284690 3284887 1 1305 0.24242424242424243 198 48 "putative outer membrane protein" +BW25113_3145 yraK 0 3284700 3285791 1 6528 0.1978021978021978 1092 216 "putative fimbrial-like adhesin protein" +BW25113_3145__5prime yraK__5prime 0 3284502 3284699 1 900 0.1717171717171717 198 34 "putative fimbrial-like adhesin protein" +BW25113_3145__3prime yraK__3prime 0 3285792 3285989 1 1070 0.1717171717171717 198 34 "putative fimbrial-like adhesin protein" +BW25113_3146 rsmI 0 3285834 3286694 -1 3021 0.14750290360046459 861 127 '"16S rRNA C1402 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_3146__5prime rsmI__5prime 0 3286695 3286892 -1 919 0.17676767676767677 198 35 '"16S rRNA C1402 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_3146__3prime rsmI__3prime 0 3285636 3285833 -1 599 0.16161616161616163 198 32 '"16S rRNA C1402 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_3147 lpoA 0 3286759 3288795 1 5364 0.14531173294059893 2037 296 "OM lipoprotein stimulator of MrcA transpeptidase" +BW25113_3147__5prime lpoA__5prime 0 3286561 3286758 1 813 0.16666666666666666 198 33 "OM lipoprotein stimulator of MrcA transpeptidase" +BW25113_3147__3prime lpoA__3prime 0 3288796 3288993 1 492 0.16161616161616163 198 32 "OM lipoprotein stimulator of MrcA transpeptidase" +BW25113_3148 yraN 0 3288753 3289148 1 1208 0.18181818181818182 396 72 "UPF0102 family protein" +BW25113_3148__5prime yraN__5prime 0 3288555 3288752 1 269 0.09595959595959595 198 19 "UPF0102 family protein" +BW25113_3148__3prime yraN__3prime 0 3289149 3289346 1 905 0.14646464646464646 198 29 "UPF0102 family protein" +BW25113_3149 diaA 0 3289168 3289758 1 1937 0.12351945854483926 591 73 "DnaA initiator-associating factor for replication initiation" +BW25113_3149__5prime diaA__5prime 0 3288970 3289167 1 787 0.18686868686868688 198 37 "DnaA initiator-associating factor for replication initiation" +BW25113_3149__3prime diaA__3prime 0 3289759 3289956 1 404 0.13131313131313133 198 26 "DnaA initiator-associating factor for replication initiation" +BW25113_3150 yraP 0 3289768 3290343 1 1410 0.12152777777777778 576 70 "outer membrane lipoprotein" +BW25113_3150__5prime yraP__5prime 0 3289570 3289767 1 526 0.08080808080808081 198 16 "outer membrane lipoprotein" +BW25113_3150__3prime yraP__3prime 0 3290344 3290541 1 439 0.10101010101010101 198 20 "outer membrane lipoprotein" +3290357_3290441 3290357_3290441 0 3290358 3290441 1 75 0.047619047619047616 84 4 "3290357_3290441" +3290357_3290441__5prime 3290357_3290441__5prime 0 3290160 3290357 1 354 0.09595959595959595 198 19 "3290357_3290441" +3290357_3290441__3prime 3290357_3290441__3prime 0 3290442 3290639 1 349 0.10606060606060606 198 21 "3290357_3290441" +BW25113_3151 yraQ 0 3290457 3291497 -1 2615 0.12199807877041306 1041 127 "putative inner membrane permease" +BW25113_3151__5prime yraQ__5prime 0 3291498 3291695 -1 274 0.06565656565656566 198 13 "putative inner membrane permease" +BW25113_3151__3prime yraQ__3prime 0 3290259 3290456 -1 246 0.05555555555555555 198 11 "putative inner membrane permease" +BW25113_3152 yraR 0 3291570 3292205 -1 1677 0.09905660377358491 636 63 "putative nucleoside-diphosphate-sugar epimerase" +BW25113_3152__5prime yraR__5prime 0 3292206 3292403 -1 316 0.1111111111111111 198 22 "putative nucleoside-diphosphate-sugar epimerase" +BW25113_3152__3prime yraR__3prime 0 3291372 3291569 -1 465 0.12626262626262627 198 25 "putative nucleoside-diphosphate-sugar epimerase" +BW25113_3153 yhbO 0 3292333 3292851 1 841 0.08092485549132948 519 42 "stress-resistance protein" +BW25113_3153__5prime yhbO__5prime 0 3292135 3292332 1 390 0.12626262626262627 198 25 "stress-resistance protein" +BW25113_3153__3prime yhbO__3prime 0 3292852 3293049 1 484 0.12626262626262627 198 25 "stress-resistance protein" +BW25113_3154 yhbP 0 3292831 3293274 -1 790 0.10135135135135136 444 45 "UPF0306 family protein" +BW25113_3154__5prime yhbP__5prime 0 3293275 3293472 -1 509 0.1111111111111111 198 22 "UPF0306 family protein" +BW25113_3154__3prime yhbP__3prime 0 3292633 3292830 -1 345 0.08080808080808081 198 16 "UPF0306 family protein" +BW25113_3155 yhbQ 0 3293325 3293627 1 528 0.08250825082508251 303 25 "GIY-YIG nuclease superfamily protein" +BW25113_3155__5prime yhbQ__5prime 0 3293127 3293324 1 447 0.1111111111111111 198 22 "GIY-YIG nuclease superfamily protein" +BW25113_3155__3prime yhbQ__3prime 0 3293628 3293825 1 446 0.13131313131313133 198 26 "GIY-YIG nuclease superfamily protein" +BW25113_3156 yhbS 0 3293614 3294117 -1 1093 0.12896825396825398 504 65 "putative acyl-CoA transferase" +BW25113_3156__5prime yhbS__5prime 0 3294118 3294315 -1 590 0.14646464646464646 198 29 "putative acyl-CoA transferase" +BW25113_3156__3prime yhbS__3prime 0 3293416 3293613 -1 433 0.08585858585858586 198 17 "putative acyl-CoA transferase" +BW25113_3157 yhbT 0 3294111 3294635 -1 1380 0.12761904761904763 525 67 "SCP-2 sterol transfer family protein" +BW25113_3157__5prime yhbT__5prime 0 3294636 3294833 -1 45 0.015151515151515152 198 3 "SCP-2 sterol transfer family protein" +BW25113_3157__3prime yhbT__3prime 0 3293913 3294110 -1 352 0.09595959595959595 198 19 "SCP-2 sterol transfer family protein" +BW25113_3158 yhbU 0 3294844 3295839 1 2878 0.10943775100401607 996 109 "U32 peptidase family protein" +BW25113_3158__5prime yhbU__5prime 0 3294646 3294843 1 45 0.015151515151515152 198 3 "U32 peptidase family protein" +BW25113_3158__3prime yhbU__3prime 0 3295840 3296037 1 366 0.10101010101010101 198 20 "U32 peptidase family protein" +BW25113_3159 yhbV 0 3295848 3296726 1 1960 0.11035267349260523 879 97 "U32 peptidase family protein" +BW25113_3159__5prime yhbV__5prime 0 3295650 3295847 1 492 0.10101010101010101 198 20 "U32 peptidase family protein" +BW25113_3159__3prime yhbV__3prime 0 3296727 3296924 1 395 0.09090909090909091 198 18 "U32 peptidase family protein" +BW25113_3160 yhbW 0 3296807 3297814 1 3234 0.13095238095238096 1008 132 "putative luciferase-like monooxygenase" +BW25113_3160__5prime yhbW__5prime 0 3296609 3296806 1 270 0.08080808080808081 198 16 "putative luciferase-like monooxygenase" +BW25113_3160__3prime yhbW__3prime 0 3297815 3298012 1 684 0.15656565656565657 198 31 "putative luciferase-like monooxygenase" +3297862_3297891 3297862_3297891 0 3297863 3297891 1 270 0.10344827586206896 29 3 "3297862_3297891" +3297862_3297891__5prime 3297862_3297891__5prime 0 3297665 3297862 1 710 0.18686868686868688 198 37 "3297862_3297891" +3297862_3297891__3prime 3297862_3297891__3prime 0 3297892 3298089 1 661 0.1414141414141414 198 28 "3297862_3297891" +BW25113_3161 mtr 0 3297932 3299176 -1 3695 0.14216867469879518 1245 177 "tryptophan transporter of high affinity" +BW25113_3161__5prime mtr__5prime 0 3299177 3299374 -1 52 0.025252525252525252 198 5 "tryptophan transporter of high affinity" +BW25113_3161__3prime mtr__3prime 0 3297734 3297931 -1 944 0.20707070707070707 198 41 "tryptophan transporter of high affinity" +BW25113_3162 deaD 0 3299330 3301219 -1 4617 0.1 1890 189 "ATP-dependent RNA helicase" +BW25113_3162__5prime deaD__5prime 0 3301220 3301417 -1 496 0.13636363636363635 198 27 "ATP-dependent RNA helicase" +BW25113_3162__3prime deaD__3prime 0 3299132 3299329 -1 288 0.07575757575757576 198 15 "ATP-dependent RNA helicase" +BW25113_4685 yrbN 0 3301212 3301292 -1 276 0.18518518518518517 81 15 "uncharacterized protein" +BW25113_4685__5prime yrbN__5prime 0 3301293 3301490 -1 375 0.1111111111111111 198 22 "uncharacterized protein" +BW25113_4685__3prime yrbN__3prime 0 3301014 3301211 -1 224 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_3163 nlpI 0 3301399 3302283 -1 1256 0.0768361581920904 885 68 "lipoprotein involved in osmotic sensitivity and filamentation" +BW25113_3163__5prime nlpI__5prime 0 3302284 3302481 -1 616 0.06565656565656566 198 13 "lipoprotein involved in osmotic sensitivity and filamentation" +BW25113_3163__3prime nlpI__3prime 0 3301201 3301398 -1 458 0.12626262626262627 198 25 "lipoprotein involved in osmotic sensitivity and filamentation" +BW25113_3164 pnp 0 3302392 3304527 -1 1450 0.02762172284644195 2136 59 "polynucleotide phosphorylase/polyadenylase" +BW25113_3164__5prime pnp__5prime 0 3304528 3304725 -1 246 0.050505050505050504 198 10 "polynucleotide phosphorylase/polyadenylase" +BW25113_3164__3prime pnp__3prime 0 3302194 3302391 -1 221 0.07575757575757576 198 15 "polynucleotide phosphorylase/polyadenylase" +BW25113_4449 psrO 0 3304584 3304757 1 214 0.04597701149425287 174 8 "novel sRNA and function unknown" +BW25113_4449__5prime psrO__5prime 0 3304386 3304583 1 32 0.010101010101010102 198 2 "novel sRNA and function unknown" +BW25113_4449__3prime psrO__3prime 0 3304758 3304955 1 18 0.005050505050505051 198 1 "novel sRNA and function unknown" +BW25113_3165 rpsO 0 3304774 3305043 -1 18 0.003703703703703704 270 1 "30S ribosomal subunit protein S15" +BW25113_3165__5prime rpsO__5prime 0 3305044 3305241 -1 23 0.020202020202020204 198 4 "30S ribosomal subunit protein S15" +BW25113_3165__3prime rpsO__3prime 0 3304576 3304773 -1 228 0.045454545454545456 198 9 "30S ribosomal subunit protein S15" +BW25113_3166 truB 0 3305192 3306136 -1 1974 0.10052910052910052 945 95 "tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase" +BW25113_3166__5prime truB__5prime 0 3306137 3306334 -1 248 0.04040404040404041 198 8 "tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase" +BW25113_3166__3prime truB__3prime 0 3304994 3305191 -1 5 0.005050505050505051 198 1 "tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase" +BW25113_3167 rbfA 0 3306136 3306537 -1 273 0.02736318407960199 402 11 "30s ribosome binding factor" +BW25113_3167__5prime rbfA__5prime 0 3306538 3306735 -1 122 0.030303030303030304 198 6 "30s ribosome binding factor" +BW25113_3167__3prime rbfA__3prime 0 3305938 3306135 -1 243 0.03535353535353535 198 7 "30s ribosome binding factor" +3306610_3306687 3306610_3306687 0 3306611 3306687 1 19 0.012987012987012988 77 1 "3306610_3306687" +3306610_3306687__5prime 3306610_3306687__5prime 0 3306413 3306610 1 37 0.005050505050505051 198 1 "3306610_3306687" +3306610_3306687__3prime 3306610_3306687__3prime 0 3306688 3306885 1 66 0.020202020202020204 198 4 "3306610_3306687" +BW25113_3168 infB 0 3306701 3309373 -1 263 0.005237560793116348 2673 14 "translation initiation factor IF-2" +BW25113_3168__5prime infB__5prime 0 3309374 3309571 -1 143 0.025252525252525252 198 5 "translation initiation factor IF-2" +BW25113_3168__3prime infB__3prime 0 3306503 3306700 -1 56 0.010101010101010102 198 2 "translation initiation factor IF-2" +BW25113_3169 nusA 0 3309398 3310885 -1 532 0.003360215053763441 1488 5 "transcription termination/antitermination L factor" +BW25113_3169__5prime nusA__5prime 0 3310886 3311083 -1 198 0.05555555555555555 198 11 "transcription termination/antitermination L factor" +BW25113_3169__3prime nusA__3prime 0 3309200 3309397 -1 84 0.015151515151515152 198 3 "transcription termination/antitermination L factor" +BW25113_3170 rimP 0 3310913 3311365 -1 401 0.05077262693156733 453 23 "ribosome maturation factor for 30S subunits" +BW25113_3170__5prime rimP__5prime 0 3311366 3311563 -1 120 0.030303030303030304 198 6 "ribosome maturation factor for 30S subunits" +BW25113_3170__3prime rimP__3prime 0 3310715 3310912 -1 40 0.005050505050505051 198 1 "ribosome maturation factor for 30S subunits" +BW25113_3171 metY 0 3311572 3311648 -1 113 0.07792207792207792 77 6 "tRNA-Met" +BW25113_3171__5prime metY__5prime 0 3311649 3311846 -1 195 0.08080808080808081 198 16 "tRNA-Met" +BW25113_3171__3prime metY__3prime 0 3311374 3311571 -1 128 0.03535353535353535 198 7 "tRNA-Met" +BW25113_3172 argG 0 3311996 3313339 1 4110 0.14508928571428573 1344 195 "argininosuccinate synthetase" +BW25113_3172__5prime argG__5prime 0 3311798 3311995 1 173 0.05555555555555555 198 11 "argininosuccinate synthetase" +BW25113_3172__3prime argG__3prime 0 3313340 3313537 1 1163 0.20707070707070707 198 41 "argininosuccinate synthetase" +BW25113_3173 yhbX 0 3313347 3314972 -1 32413 0.33456334563345635 1626 544 "putative EptAB family phosphoethanolamine transferase and inner membrane protein" +BW25113_3173__5prime yhbX__5prime 0 3314973 3315170 -1 632 0.14646464646464646 198 29 "putative EptAB family phosphoethanolamine transferase and inner membrane protein" +BW25113_3173__3prime yhbX__3prime 0 3313149 3313346 -1 373 0.10101010101010101 198 20 "putative EptAB family phosphoethanolamine transferase and inner membrane protein" +BW25113_3174 leuU 0 3315431 3315517 -1 0 0.0 87 0 "tRNA-Leu" +BW25113_3174__5prime leuU__5prime 0 3315518 3315715 -1 546 0.0707070707070707 198 14 "tRNA-Leu" +BW25113_3174__3prime leuU__3prime 0 3315233 3315430 -1 2423 0.31313131313131315 198 62 "tRNA-Leu" +BW25113_3175 secG 0 3315532 3315864 -1 768 0.07507507507507508 333 25 "preprotein translocase membrane subunit" +BW25113_3175__5prime secG__5prime 0 3315865 3316062 -1 76 0.020202020202020204 198 4 "preprotein translocase membrane subunit" +BW25113_3175__3prime secG__3prime 0 3315334 3315531 -1 1426 0.16666666666666666 198 33 "preprotein translocase membrane subunit" +BW25113_3176 glmM 0 3316092 3317429 -1 44 0.0029895366218236174 1338 4 "phosphoglucosamine mutase" +BW25113_3176__5prime glmM__5prime 0 3317430 3317627 -1 219 0.025252525252525252 198 5 "phosphoglucosamine mutase" +BW25113_3176__3prime glmM__3prime 0 3315894 3316091 -1 47 0.010101010101010102 198 2 "phosphoglucosamine mutase" +BW25113_3177 folP 0 3317422 3318270 -1 275 0.012956419316843345 849 11 "7 and 8-dihydropteroate synthase" +BW25113_3177__5prime folP__5prime 0 3318271 3318468 -1 633 0.12121212121212122 198 24 "7 and 8-dihydropteroate synthase" +BW25113_3177__3prime folP__3prime 0 3317224 3317421 -1 0 0.0 198 0 "7 and 8-dihydropteroate synthase" +BW25113_3178 ftsH 0 3318360 3320294 -1 459 0.008785529715762274 1935 17 "protease and ATP-dependent zinc-metallo" +BW25113_3178__5prime ftsH__5prime 0 3320295 3320492 -1 176 0.04040404040404041 198 8 "protease and ATP-dependent zinc-metallo" +BW25113_3178__3prime ftsH__3prime 0 3318162 3318359 -1 233 0.05555555555555555 198 11 "protease and ATP-dependent zinc-metallo" +BW25113_3179 rlmE 0 3320394 3321023 -1 226 0.020634920634920634 630 13 '"23S rRNA U2552 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_3179__5prime rlmE__5prime 0 3321024 3321221 -1 572 0.15151515151515152 198 30 '"23S rRNA U2552 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_3179__3prime rlmE__3prime 0 3320196 3320393 -1 37 0.015151515151515152 198 3 '"23S rRNA U2552 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_3180 yhbY 0 3321149 3321442 1 1140 0.1598639455782313 294 47 "RNA binding protein associated with pre-50S ribosomal subunits" +BW25113_3180__5prime yhbY__5prime 0 3320951 3321148 1 332 0.07575757575757576 198 15 "RNA binding protein associated with pre-50S ribosomal subunits" +BW25113_3180__3prime yhbY__3prime 0 3321443 3321640 1 443 0.10101010101010101 198 20 "RNA binding protein associated with pre-50S ribosomal subunits" +BW25113_3181 greA 0 3321598 3322074 -1 708 0.08176100628930817 477 39 "transcript cleavage factor" +BW25113_3181__5prime greA__5prime 0 3322075 3322272 -1 434 0.16161616161616163 198 32 "transcript cleavage factor" +BW25113_3181__3prime greA__3prime 0 3321400 3321597 -1 473 0.10101010101010101 198 20 "transcript cleavage factor" +BW25113_3182 dacB 0 3322322 3323755 1 4556 0.14714086471408647 1434 211 "D-alanyl-D-alanine carboxypeptidase" +BW25113_3182__5prime dacB__5prime 0 3322124 3322321 1 416 0.15151515151515152 198 30 "D-alanyl-D-alanine carboxypeptidase" +BW25113_3182__3prime dacB__3prime 0 3323756 3323953 1 139 0.0707070707070707 198 14 "D-alanyl-D-alanine carboxypeptidase" +3323818_3323916 3323818_3323916 0 3323819 3323916 1 42 0.030612244897959183 98 3 "3323818_3323916" +3323818_3323916__5prime 3323818_3323916__5prime 0 3323621 3323818 1 366 0.10101010101010101 198 20 "3323818_3323916" +3323818_3323916__3prime 3323818_3323916__3prime 0 3323917 3324114 1 341 0.12121212121212122 198 24 "3323818_3323916" +BW25113_3183 obgE 0 3323941 3325113 -1 324 0.017050298380221655 1173 20 "GTPase involved in cell partioning and DNA repair" +BW25113_3183__5prime obgE__5prime 0 3325114 3325311 -1 622 0.12121212121212122 198 24 "GTPase involved in cell partioning and DNA repair" +BW25113_3183__3prime obgE__3prime 0 3323743 3323940 -1 146 0.0707070707070707 198 14 "GTPase involved in cell partioning and DNA repair" +BW25113_3184 yhbE 0 3325129 3326094 -1 2900 0.12215320910973085 966 118 "EamA family inner membrane putative transporter" +BW25113_3184__5prime yhbE__5prime 0 3326095 3326292 -1 5 0.005050505050505051 198 1 "EamA family inner membrane putative transporter" +BW25113_3184__3prime yhbE__3prime 0 3324931 3325128 -1 0 0.0 198 0 "EamA family inner membrane putative transporter" +BW25113_3185 rpmA 0 3326221 3326478 -1 0 0.0 258 0 "50S ribosomal subunit protein L27" +BW25113_3185__5prime rpmA__5prime 0 3326479 3326676 -1 0 0.0 198 0 "50S ribosomal subunit protein L27" +BW25113_3185__3prime rpmA__3prime 0 3326023 3326220 -1 140 0.050505050505050504 198 10 "50S ribosomal subunit protein L27" +BW25113_3186 rplU 0 3326499 3326810 -1 0 0.0 312 0 "50S ribosomal subunit protein L21" +BW25113_3186__5prime rplU__5prime 0 3326811 3327008 -1 465 0.09595959595959595 198 19 "50S ribosomal subunit protein L21" +BW25113_3186__3prime rplU__3prime 0 3326301 3326498 -1 0 0.0 198 0 "50S ribosomal subunit protein L21" +BW25113_3187 ispB 0 3327069 3328040 1 155 0.006172839506172839 972 6 "octaprenyl diphosphate synthase" +BW25113_3187__5prime ispB__5prime 0 3326871 3327068 1 594 0.15151515151515152 198 30 "octaprenyl diphosphate synthase" +BW25113_3187__3prime ispB__3prime 0 3328041 3328238 1 419 0.09090909090909091 198 18 "octaprenyl diphosphate synthase" +BW25113_3188 sfsB 0 3328268 3328546 1 662 0.11469534050179211 279 32 "malPQ operon transcriptional activator" +BW25113_3188__5prime sfsB__5prime 0 3328070 3328267 1 577 0.11616161616161616 198 23 "malPQ operon transcriptional activator" +BW25113_3188__3prime sfsB__3prime 0 3328547 3328744 1 6 0.005050505050505051 198 1 "malPQ operon transcriptional activator" +BW25113_3189 murA 0 3328594 3329853 -1 0 0.0 1260 0 "UDP-N-acetylglucosamine 1-carboxyvinyltransferase" +BW25113_3189__5prime murA__5prime 0 3329854 3330051 -1 443 0.10101010101010101 198 20 "UDP-N-acetylglucosamine 1-carboxyvinyltransferase" +BW25113_3189__3prime murA__3prime 0 3328396 3328593 -1 402 0.09595959595959595 198 19 "UDP-N-acetylglucosamine 1-carboxyvinyltransferase" +BW25113_3190 ibaG 0 3329908 3330162 -1 745 0.12156862745098039 255 31 "acid stress protein; putative transcriptional regulator and BolA family" +BW25113_3190__5prime ibaG__5prime 0 3330163 3330360 -1 1324 0.10101010101010101 198 20 "acid stress protein; putative transcriptional regulator and BolA family" +BW25113_3190__3prime ibaG__3prime 0 3329710 3329907 -1 39 0.025252525252525252 198 5 "acid stress protein; putative transcriptional regulator and BolA family" +3330277_3330311 3330277_3330311 0 3330278 3330311 1 168 0.08823529411764706 34 3 "3330277_3330311" +3330277_3330311__5prime 3330277_3330311__5prime 0 3330080 3330277 1 1193 0.10101010101010101 198 20 "3330277_3330311" +3330277_3330311__3prime 3330277_3330311__3prime 0 3330312 3330509 1 1381 0.1717171717171717 198 34 "3330277_3330311" +BW25113_3191 mlaB 0 3330322 3330615 -1 1678 0.16326530612244897 294 48 "ABC transporter maintaining OM lipid asymmetry and cytoplasmic STAS component" +BW25113_3191__5prime mlaB__5prime 0 3330616 3330813 -1 292 0.08080808080808081 198 16 "ABC transporter maintaining OM lipid asymmetry and cytoplasmic STAS component" +BW25113_3191__3prime mlaB__3prime 0 3330124 3330321 -1 1349 0.1111111111111111 198 22 "ABC transporter maintaining OM lipid asymmetry and cytoplasmic STAS component" +BW25113_3192 mlaC 0 3330615 3331250 -1 2253 0.16823899371069181 636 107 "ABC transporter maintaining OM lipid asymmetry and periplasmic binding protein" +BW25113_3192__5prime mlaC__5prime 0 3331251 3331448 -1 921 0.1717171717171717 198 34 "ABC transporter maintaining OM lipid asymmetry and periplasmic binding protein" +BW25113_3192__3prime mlaC__3prime 0 3330417 3330614 -1 802 0.18686868686868688 198 37 "ABC transporter maintaining OM lipid asymmetry and periplasmic binding protein" +BW25113_3193 mlaD 0 3331269 3331820 -1 2353 0.16304347826086957 552 90 "ABC transporter maintaining OM lipid asymmetry and anchored periplasmic binding protein" +BW25113_3193__5prime mlaD__5prime 0 3331821 3332018 -1 270 0.06565656565656566 198 13 "ABC transporter maintaining OM lipid asymmetry and anchored periplasmic binding protein" +BW25113_3193__3prime mlaD__3prime 0 3331071 3331268 -1 761 0.20707070707070707 198 41 "ABC transporter maintaining OM lipid asymmetry and anchored periplasmic binding protein" +BW25113_3194 mlaE 0 3331825 3332607 -1 2132 0.13537675606641125 783 106 "ABC transporter maintaining OM lipid asymmetry and inner membrane permease protein" +BW25113_3194__5prime mlaE__5prime 0 3332608 3332805 -1 740 0.15151515151515152 198 30 "ABC transporter maintaining OM lipid asymmetry and inner membrane permease protein" +BW25113_3194__3prime mlaE__3prime 0 3331627 3331824 -1 524 0.13636363636363635 198 27 "ABC transporter maintaining OM lipid asymmetry and inner membrane permease protein" +BW25113_3195 mlaF 0 3332615 3333424 -1 4491 0.17901234567901234 810 145 "ABC transporter maintaining OM lipid asymmetry and ATP-binding protein" +BW25113_3195__5prime mlaF__5prime 0 3333425 3333622 -1 240 0.05555555555555555 198 11 "ABC transporter maintaining OM lipid asymmetry and ATP-binding protein" +BW25113_3195__3prime mlaF__3prime 0 3332417 3332614 -1 557 0.1414141414141414 198 28 "ABC transporter maintaining OM lipid asymmetry and ATP-binding protein" +BW25113_3196 yrbG 0 3333634 3334611 1 6096 0.18916155419222905 978 185 "putative calcium/sodium:proton antiporter" +BW25113_3196__5prime yrbG__5prime 0 3333436 3333633 1 239 0.05555555555555555 198 11 "putative calcium/sodium:proton antiporter" +BW25113_3196__3prime yrbG__3prime 0 3334612 3334809 1 481 0.16666666666666666 198 33 "putative calcium/sodium:proton antiporter" +BW25113_3197 kdsD 0 3334625 3335611 1 3590 0.1884498480243161 987 186 "D-arabinose 5-phosphate isomerase" +BW25113_3197__5prime kdsD__5prime 0 3334427 3334624 1 1850 0.23737373737373738 198 47 "D-arabinose 5-phosphate isomerase" +BW25113_3197__3prime kdsD__3prime 0 3335612 3335809 1 499 0.15151515151515152 198 30 "D-arabinose 5-phosphate isomerase" +BW25113_3198 kdsC 0 3335632 3336198 1 954 0.1111111111111111 567 63 "3-deoxy-D-manno-octulosonate 8-phosphate phosphatase" +BW25113_3198__5prime kdsC__5prime 0 3335434 3335631 1 779 0.19696969696969696 198 39 "3-deoxy-D-manno-octulosonate 8-phosphate phosphatase" +BW25113_3198__3prime kdsC__3prime 0 3336199 3336396 1 53 0.030303030303030304 198 6 "3-deoxy-D-manno-octulosonate 8-phosphate phosphatase" +BW25113_3199 lptC 0 3336195 3336770 1 675 0.06770833333333333 576 39 "lipopolysaccharide export and IM-tethered periplasmic protein of the LptBFGC export complex" +BW25113_3199__5prime lptC__5prime 0 3335997 3336194 1 355 0.12121212121212122 198 24 "lipopolysaccharide export and IM-tethered periplasmic protein of the LptBFGC export complex" +BW25113_3199__3prime lptC__3prime 0 3336771 3336968 1 0 0.0 198 0 "lipopolysaccharide export and IM-tethered periplasmic protein of the LptBFGC export complex" +BW25113_3200 lptA 0 3336739 3337296 1 169 0.01971326164874552 558 11 "periplasmic LPS-binding protein" +BW25113_3200__5prime lptA__5prime 0 3336541 3336738 1 622 0.16666666666666666 198 33 "periplasmic LPS-binding protein" +BW25113_3200__3prime lptA__3prime 0 3337297 3337494 1 0 0.0 198 0 "periplasmic LPS-binding protein" +BW25113_3201 lptB 0 3337303 3338028 1 57 0.005509641873278237 726 4 "lipopolysaccharide export ABC transporter ATP-binding protein of the LptBFGC export complex" +BW25113_3201__5prime lptB__5prime 0 3337105 3337302 1 169 0.05555555555555555 198 11 "lipopolysaccharide export ABC transporter ATP-binding protein of the LptBFGC export complex" +BW25113_3201__3prime lptB__3prime 0 3338029 3338226 1 354 0.1111111111111111 198 22 "lipopolysaccharide export ABC transporter ATP-binding protein of the LptBFGC export complex" +BW25113_3202 rpoN 0 3338076 3339509 1 1158 0.06276150627615062 1434 90 "RNA polymerase and sigma 54 (sigma N) factor" +BW25113_3202__5prime rpoN__5prime 0 3337878 3338075 1 259 0.05555555555555555 198 11 "RNA polymerase and sigma 54 (sigma N) factor" +BW25113_3202__3prime rpoN__3prime 0 3339510 3339707 1 1131 0.23737373737373738 198 47 "RNA polymerase and sigma 54 (sigma N) factor" +BW25113_3203 hpf 0 3339532 3339819 1 1032 0.1597222222222222 288 46 "ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S)" +BW25113_3203__5prime hpf__5prime 0 3339334 3339531 1 206 0.0707070707070707 198 14 "ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S)" +BW25113_3203__3prime hpf__3prime 0 3339820 3340017 1 694 0.20707070707070707 198 41 "ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S)" +BW25113_3204 ptsN 0 3339937 3340428 1 988 0.12601626016260162 492 62 "sugar-specific enzyme IIA component of PTS" +BW25113_3204__5prime ptsN__5prime 0 3339739 3339936 1 583 0.1717171717171717 198 34 "sugar-specific enzyme IIA component of PTS" +BW25113_3204__3prime ptsN__3prime 0 3340429 3340626 1 414 0.17676767676767677 198 35 "sugar-specific enzyme IIA component of PTS" +BW25113_3205 yhbJ 0 3340474 3341328 1 1848 0.1391812865497076 855 119 "adaptor protein RapZ for GlmZ/GlmY sRNA decay; glucosamine-6-phosphate regulated; NTPase" +BW25113_3205__5prime yhbJ__5prime 0 3340276 3340473 1 514 0.14646464646464646 198 29 "adaptor protein RapZ for GlmZ/GlmY sRNA decay; glucosamine-6-phosphate regulated; NTPase" +BW25113_3205__3prime yhbJ__3prime 0 3341329 3341526 1 552 0.1414141414141414 198 28 "adaptor protein RapZ for GlmZ/GlmY sRNA decay; glucosamine-6-phosphate regulated; NTPase" +BW25113_3206 npr 0 3341325 3341597 1 779 0.1575091575091575 273 43 "phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)" +BW25113_3206__5prime npr__5prime 0 3341127 3341324 1 615 0.15656565656565657 198 31 "phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)" +BW25113_3206__3prime npr__3prime 0 3341598 3341795 1 202 0.0707070707070707 198 14 "phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)" +BW25113_3207 yrbL 0 3341811 3342443 1 3542 0.20537124802527645 633 130 "Mg(2+)-starvation-stimulated protein" +BW25113_3207__5prime yrbL__5prime 0 3341613 3341810 1 202 0.0707070707070707 198 14 "Mg(2+)-starvation-stimulated protein" +BW25113_3207__3prime yrbL__3prime 0 3342444 3342641 1 1133 0.16666666666666666 198 33 "Mg(2+)-starvation-stimulated protein" +BW25113_3208 mtgA 0 3342440 3343168 -1 2722 0.1412894375857339 729 103 "biosynthetic peptidoglycan transglycosylase" +BW25113_3208__5prime mtgA__5prime 0 3343169 3343366 -1 1006 0.2222222222222222 198 44 "biosynthetic peptidoglycan transglycosylase" +BW25113_3208__3prime mtgA__3prime 0 3342242 3342439 -1 1355 0.25252525252525254 198 50 "biosynthetic peptidoglycan transglycosylase" +BW25113_3209 elbB 0 3343165 3343818 -1 2259 0.12996941896024464 654 85 "isoprenoid biosynthesis protein with amidotransferase-like domain" +BW25113_3209__5prime elbB__5prime 0 3343819 3344016 -1 269 0.06060606060606061 198 12 "isoprenoid biosynthesis protein with amidotransferase-like domain" +BW25113_3209__3prime elbB__3prime 0 3342967 3343164 -1 646 0.14646464646464646 198 29 "isoprenoid biosynthesis protein with amidotransferase-like domain" +BW25113_4450 arcZ 0 3343936 3344056 1 356 0.12396694214876033 121 15 "sRNA positive antisense regulator of rpoS; binds Hfq" +BW25113_4450__5prime arcZ__5prime 0 3343738 3343935 1 501 0.045454545454545456 198 9 "sRNA positive antisense regulator of rpoS; binds Hfq" +BW25113_4450__3prime arcZ__3prime 0 3344057 3344254 1 534 0.10101010101010101 198 20 "sRNA positive antisense regulator of rpoS; binds Hfq" +BW25113_3210 arcB 0 3344048 3346384 -1 6055 0.12537441163885324 2337 293 "aerobic respiration control sensor histidine protein kinase and cognate to two-component response regulators ArcA and RssB" +BW25113_3210__5prime arcB__5prime 0 3346385 3346582 -1 322 0.06565656565656566 198 13 "aerobic respiration control sensor histidine protein kinase and cognate to two-component response regulators ArcA and RssB" +BW25113_3210__3prime arcB__3prime 0 3343850 3344047 -1 364 0.08080808080808081 198 16 "aerobic respiration control sensor histidine protein kinase and cognate to two-component response regulators ArcA and RssB" +BW25113_3211 yhcC 0 3346480 3347409 -1 3517 0.14193548387096774 930 132 "putative Fe-S oxidoreductase and Radical SAM superfamily protein" +BW25113_3211__5prime yhcC__5prime 0 3347410 3347607 -1 231 0.06060606060606061 198 12 "putative Fe-S oxidoreductase and Radical SAM superfamily protein" +BW25113_3211__3prime yhcC__3prime 0 3346282 3346479 -1 434 0.0707070707070707 198 14 "putative Fe-S oxidoreductase and Radical SAM superfamily protein" +BW25113_3212 gltB 0 3348084 3352544 1 13088 0.1230665770006725 4461 549 "glutamate synthase and large subunit" +BW25113_3212__5prime gltB__5prime 0 3347886 3348083 1 450 0.11616161616161616 198 23 "glutamate synthase and large subunit" +BW25113_3212__3prime gltB__3prime 0 3352545 3352742 1 749 0.13636363636363635 198 27 "glutamate synthase and large subunit" +BW25113_3213 gltD 0 3352557 3353975 1 6636 0.14869626497533475 1419 211 "glutamate synthase and 4Fe-4S protein and small subunit" +BW25113_3213__5prime gltD__5prime 0 3352359 3352556 1 534 0.13636363636363635 198 27 "glutamate synthase and 4Fe-4S protein and small subunit" +BW25113_3213__3prime gltD__3prime 0 3353976 3354173 1 2720 0.3888888888888889 198 77 "glutamate synthase and 4Fe-4S protein and small subunit" +3354046_3354145 3354046_3354145 0 3354047 3354145 1 1991 0.36363636363636365 99 36 "3354046_3354145" +3354046_3354145__5prime 3354046_3354145__5prime 0 3353849 3354046 1 2974 0.40404040404040403 198 80 "3354046_3354145" +3354046_3354145__3prime 3354046_3354145__3prime 0 3354146 3354343 1 562 0.19696969696969696 198 39 "3354046_3354145" +BW25113_3214 gltF 0 3354535 3355299 1 19562 0.4549019607843137 765 348 "periplasmic protein" +BW25113_3214__5prime gltF__5prime 0 3354337 3354534 1 345 0.12626262626262627 198 25 "periplasmic protein" +BW25113_3214__3prime gltF__3prime 0 3355300 3355497 1 1364 0.26262626262626265 198 52 "periplasmic protein" +BW25113_3215 yhcA 0 3355471 3356145 1 8059 0.34814814814814815 675 235 "putative periplasmic chaperone protein" +BW25113_3215__5prime yhcA__5prime 0 3355273 3355470 1 1424 0.2676767676767677 198 53 "putative periplasmic chaperone protein" +BW25113_3215__3prime yhcA__3prime 0 3356146 3356343 1 2592 0.29292929292929293 198 58 "putative periplasmic chaperone protein" +BW25113_3216 yhcD 0 3356166 3358547 1 12868 0.18933669185558355 2382 451 "putative outer membrane fimbrial subunit usher protein" +BW25113_3216__5prime yhcD__5prime 0 3355968 3356165 1 1526 0.31313131313131315 198 62 "putative outer membrane fimbrial subunit usher protein" +BW25113_3216__3prime yhcD__3prime 0 3358548 3358745 1 1015 0.23737373737373738 198 47 "putative outer membrane fimbrial subunit usher protein" +BW25113_4569 yhcE 0 3358544 3360288 1 4715 0.17077363896848138 1745 298 "3358543_3360288" +BW25113_4569__5prime yhcE__5prime 0 3358346 3358543 1 1108 0.21212121212121213 198 42 "3358543_3360288" +BW25113_4569__3prime yhcE__3prime 0 3360289 3360486 1 2337 0.3686868686868687 198 73 "3358543_3360288" +3358914_3360109 3358914_3360109 0 3358915 3360109 -1 2357 0.1682008368200837 1195 201 "3358914_3360109" +3358914_3360109__5prime 3358914_3360109__5prime 0 3360110 3360307 -1 621 0.13131313131313133 198 26 "3358914_3360109" +3358914_3360109__3prime 3358914_3360109__3prime 0 3358717 3358914 -1 692 0.13131313131313133 198 26 "3358914_3360109" +BW25113_3218 insH1 0 3359061 3360077 -1 2138 0.17994100294985252 1017 183 "IS5 transposase and trans-activator" +BW25113_3218__5prime insH1__5prime 0 3360078 3360275 -1 643 0.1717171717171717 198 34 "IS5 transposase and trans-activator" +BW25113_3218__3prime insH1__3prime 0 3358863 3359060 -1 270 0.06060606060606061 198 12 "IS5 transposase and trans-activator" +BW25113_3219 yhcF 0 3360285 3361001 1 11708 0.39748953974895396 717 285 "putative transcriptional regulator" +BW25113_3219__5prime yhcF__5prime 0 3360087 3360284 1 738 0.17676767676767677 198 35 "putative transcriptional regulator" +BW25113_3219__3prime yhcF__3prime 0 3361002 3361199 1 5011 0.47474747474747475 198 94 "putative transcriptional regulator" +BW25113_3220 yhcG 0 3361186 3362313 1 4830 0.1356382978723404 1128 153 "DUF1016 family protein in the PD-(D/E)XK nuclease superfamily" +BW25113_3220__5prime yhcG__5prime 0 3360988 3361185 1 5549 0.5151515151515151 198 102 "DUF1016 family protein in the PD-(D/E)XK nuclease superfamily" +BW25113_3220__3prime yhcG__3prime 0 3362314 3362511 1 698 0.10101010101010101 198 20 "DUF1016 family protein in the PD-(D/E)XK nuclease superfamily" +BW25113_3221 yhcH 0 3362373 3362837 -1 1967 0.14193548387096774 465 66 "DUF386 family protein and cupin superfamily" +BW25113_3221__5prime yhcH__5prime 0 3362838 3363035 -1 264 0.11616161616161616 198 23 "DUF386 family protein and cupin superfamily" +BW25113_3221__3prime yhcH__3prime 0 3362175 3362372 -1 1074 0.1111111111111111 198 22 "DUF386 family protein and cupin superfamily" +BW25113_3222 nanK 0 3362834 3363709 -1 2100 0.11643835616438356 876 102 "N-acetylmannosamine kinase" +BW25113_3222__5prime nanK__5prime 0 3363710 3363907 -1 728 0.07575757575757576 198 15 "N-acetylmannosamine kinase" +BW25113_3222__3prime nanK__3prime 0 3362636 3362833 -1 616 0.10606060606060606 198 21 "N-acetylmannosamine kinase" +BW25113_3223 nanE 0 3363706 3364395 -1 1911 0.11594202898550725 690 80 "putative N-acetylmannosamine-6-P epimerase" +BW25113_3223__5prime nanE__5prime 0 3364396 3364593 -1 295 0.09090909090909091 198 18 "putative N-acetylmannosamine-6-P epimerase" +BW25113_3223__3prime nanE__3prime 0 3363508 3363705 -1 1004 0.18686868686868688 198 37 "putative N-acetylmannosamine-6-P epimerase" +BW25113_3224 nanT 0 3364443 3365933 -1 4496 0.1341381623071764 1491 200 "sialic acid transporter" +BW25113_3224__5prime nanT__5prime 0 3365934 3366131 -1 733 0.17676767676767677 198 35 "sialic acid transporter" +BW25113_3224__3prime nanT__3prime 0 3364245 3364442 -1 644 0.16666666666666666 198 33 "sialic acid transporter" +BW25113_3225 nanA 0 3366042 3366935 -1 2264 0.14541387024608501 894 130 "N-acetylneuraminate lyase" +BW25113_3225__5prime nanA__5prime 0 3366936 3367133 -1 396 0.08585858585858586 198 17 "N-acetylneuraminate lyase" +BW25113_3225__3prime nanA__3prime 0 3365844 3366041 -1 948 0.18686868686868688 198 37 "N-acetylneuraminate lyase" +BW25113_3226 nanR 0 3367057 3367848 -1 1885 0.10606060606060606 792 84 "transcriptional repressor of the nan operon and induced by sialic acid" +BW25113_3226__5prime nanR__5prime 0 3367849 3368046 -1 1579 0.23737373737373738 198 47 "transcriptional repressor of the nan operon and induced by sialic acid" +BW25113_3226__3prime nanR__3prime 0 3366859 3367056 -1 532 0.13131313131313133 198 26 "transcriptional repressor of the nan operon and induced by sialic acid" +BW25113_3227 dcuD 0 3368228 3369595 1 9411 0.21198830409356725 1368 290 "putative transporter" +BW25113_3227__5prime dcuD__5prime 0 3368030 3368227 1 573 0.09090909090909091 198 18 "putative transporter" +BW25113_3227__3prime dcuD__3prime 0 3369596 3369793 1 778 0.13636363636363635 198 27 "putative transporter" +BW25113_3228 sspB 0 3369638 3370135 -1 1663 0.1285140562248996 498 64 "ClpXP protease specificity enhancing factor" +BW25113_3228__5prime sspB__5prime 0 3370136 3370333 -1 387 0.09595959595959595 198 19 "ClpXP protease specificity enhancing factor" +BW25113_3228__3prime sspB__3prime 0 3369440 3369637 -1 305 0.08585858585858586 198 17 "ClpXP protease specificity enhancing factor" +BW25113_3229 sspA 0 3370141 3370779 -1 839 0.07668231611893583 639 49 "stringent starvation protein A and phage P1 late gene activator and RNAP-associated acid-resistance protein and inactive glutathione S-transferase homolog" +BW25113_3229__5prime sspA__5prime 0 3370780 3370977 -1 72 0.020202020202020204 198 4 "stringent starvation protein A and phage P1 late gene activator and RNAP-associated acid-resistance protein and inactive glutathione S-transferase homolog" +BW25113_3229__3prime sspA__3prime 0 3369943 3370140 -1 425 0.1111111111111111 198 22 "stringent starvation protein A and phage P1 late gene activator and RNAP-associated acid-resistance protein and inactive glutathione S-transferase homolog" +BW25113_3230 rpsI 0 3371174 3371566 -1 0 0.0 393 0 "30S ribosomal subunit protein S9" +BW25113_3230__5prime rpsI__5prime 0 3371567 3371764 -1 0 0.0 198 0 "30S ribosomal subunit protein S9" +BW25113_3230__3prime rpsI__3prime 0 3370976 3371173 -1 76 0.03535353535353535 198 7 "30S ribosomal subunit protein S9" +BW25113_3231 rplM 0 3371582 3372010 -1 0 0.0 429 0 "50S ribosomal subunit protein L13" +BW25113_3231__5prime rplM__5prime 0 3372011 3372208 -1 97 0.010101010101010102 198 2 "50S ribosomal subunit protein L13" +BW25113_3231__3prime rplM__3prime 0 3371384 3371581 -1 0 0.0 198 0 "50S ribosomal subunit protein L13" +BW25113_3232 yhcM 0 3372229 3373356 -1 3648 0.13652482269503546 1128 154 "putative AFG1-like family P-loop ATPase" +BW25113_3232__5prime yhcM__5prime 0 3373357 3373554 -1 531 0.07575757575757576 198 15 "putative AFG1-like family P-loop ATPase" +BW25113_3232__3prime yhcM__3prime 0 3372031 3372228 -1 155 0.030303030303030304 198 6 "putative AFG1-like family P-loop ATPase" +BW25113_3233 yhcB 0 3373550 3373948 1 463 0.06766917293233082 399 27 "DUF1043 family inner membrane-anchored protein" +BW25113_3233__5prime yhcB__5prime 0 3373352 3373549 1 531 0.07575757575757576 198 15 "DUF1043 family inner membrane-anchored protein" +BW25113_3233__3prime yhcB__3prime 0 3373949 3374146 1 643 0.12626262626262627 198 25 "DUF1043 family inner membrane-anchored protein" +BW25113_3234 degQ 0 3374102 3375469 1 4739 0.1425438596491228 1368 195 "serine endoprotease and periplasmic" +BW25113_3234__5prime degQ__5prime 0 3373904 3374101 1 478 0.10101010101010101 198 20 "serine endoprotease and periplasmic" +BW25113_3234__3prime degQ__3prime 0 3375470 3375667 1 374 0.09090909090909091 198 18 "serine endoprotease and periplasmic" +BW25113_3235 degS 0 3375559 3376626 1 245 0.011235955056179775 1068 12 "serine endoprotease and periplasmic" +BW25113_3235__5prime degS__5prime 0 3375361 3375558 1 415 0.10606060606060606 198 21 "serine endoprotease and periplasmic" +BW25113_3235__3prime degS__3prime 0 3376627 3376824 1 213 0.08080808080808081 198 16 "serine endoprotease and periplasmic" +BW25113_3235 degS 0 3375914 3376207 1 39 0.013605442176870748 294 4 "3375913_3376207" +BW25113_3235__5prime degS__5prime 0 3375716 3375913 1 0 0.0 198 0 "3375913_3376207" +BW25113_3235__3prime degS__3prime 0 3376208 3376405 1 0 0.0 198 0 "3375913_3376207" +BW25113_3236 mdh 0 3376689 3377627 -1 1283 0.07561235356762513 939 71 "malate dehydrogenase and NAD(P)-binding" +BW25113_3236__5prime mdh__5prime 0 3377628 3377825 -1 205 0.06565656565656566 198 13 "malate dehydrogenase and NAD(P)-binding" +BW25113_3236__3prime mdh__3prime 0 3376491 3376688 -1 53 0.010101010101010102 198 2 "malate dehydrogenase and NAD(P)-binding" +BW25113_3237 argR 0 3378062 3378532 1 726 0.11252653927813164 471 53 "l-arginine-responsive arginine metabolism regulon transcriptional regulator" +BW25113_3237__5prime argR__5prime 0 3377864 3378061 1 254 0.08080808080808081 198 16 "l-arginine-responsive arginine metabolism regulon transcriptional regulator" +BW25113_3237__3prime argR__3prime 0 3378533 3378730 1 438 0.09090909090909091 198 18 "l-arginine-responsive arginine metabolism regulon transcriptional regulator" +BW25113_3238 yhcN 0 3378897 3379160 1 720 0.12121212121212122 264 32 "cadmium and peroxide resistance protein and stress-induced" +BW25113_3238__5prime yhcN__5prime 0 3378699 3378896 1 26 0.015151515151515152 198 3 "cadmium and peroxide resistance protein and stress-induced" +BW25113_3238__3prime yhcN__3prime 0 3379161 3379358 1 168 0.06565656565656566 198 13 "cadmium and peroxide resistance protein and stress-induced" +BW25113_3239 yhcO 0 3379216 3379488 -1 286 0.08424908424908426 273 23 "putative barnase inhibitor" +BW25113_3239__5prime yhcO__5prime 0 3379489 3379686 -1 197 0.050505050505050504 198 10 "putative barnase inhibitor" +BW25113_3239__3prime yhcO__3prime 0 3379018 3379215 -1 450 0.09090909090909091 198 18 "putative barnase inhibitor" +BW25113_3240 aaeB 0 3379580 3381547 -1 5337 0.10670731707317073 1968 210 "p-hydroxybenzoic acid efflux system component" +BW25113_3240__5prime aaeB__5prime 0 3381548 3381745 -1 660 0.08585858585858586 198 17 "p-hydroxybenzoic acid efflux system component" +BW25113_3240__3prime aaeB__3prime 0 3379382 3379579 -1 143 0.04040404040404041 198 8 "p-hydroxybenzoic acid efflux system component" +BW25113_3241 aaeA 0 3381553 3382485 -1 2434 0.12754555198285103 933 119 "p-hydroxybenzoic acid efflux system component" +BW25113_3241__5prime aaeA__5prime 0 3382486 3382683 -1 981 0.15656565656565657 198 31 "p-hydroxybenzoic acid efflux system component" +BW25113_3241__3prime aaeA__3prime 0 3381355 3381552 -1 527 0.09595959595959595 198 19 "p-hydroxybenzoic acid efflux system component" +BW25113_3242 aaeX 0 3382493 3382696 -1 1006 0.16176470588235295 204 33 "DUF1656 family putative inner membrane efflux pump associated protein" +BW25113_3242__5prime aaeX__5prime 0 3382697 3382894 -1 624 0.12121212121212122 198 24 "DUF1656 family putative inner membrane efflux pump associated protein" +BW25113_3242__3prime aaeX__3prime 0 3382295 3382492 -1 444 0.13636363636363635 198 27 "DUF1656 family putative inner membrane efflux pump associated protein" +BW25113_3243 aaeR 0 3382879 3383808 1 2700 0.12795698924731183 930 119 "transcriptional regulator for aaeXAB operon" +BW25113_3243__5prime aaeR__5prime 0 3382681 3382878 1 649 0.13131313131313133 198 26 "transcriptional regulator for aaeXAB operon" +BW25113_3243__3prime aaeR__3prime 0 3383809 3384006 1 703 0.12121212121212122 198 24 "transcriptional regulator for aaeXAB operon" +BW25113_3244 tldD 0 3383942 3385387 -1 4808 0.12102351313969571 1446 175 "putative peptidase" +BW25113_3244__5prime tldD__5prime 0 3385388 3385585 -1 669 0.16666666666666666 198 33 "putative peptidase" +BW25113_3244__3prime tldD__3prime 0 3383744 3383941 -1 736 0.13131313131313133 198 26 "putative peptidase" +3385434_3385742 3385434_3385742 0 3385435 3385742 1 897 0.1590909090909091 308 49 "3385434_3385742" +3385434_3385742__5prime 3385434_3385742__5prime 0 3385237 3385434 1 527 0.08585858585858586 198 17 "3385434_3385742" +3385434_3385742__3prime 3385434_3385742__3prime 0 3385743 3385940 1 379 0.1111111111111111 198 22 "3385434_3385742" +BW25113_4472 yhdP 0 3385817 3389617 -1 13219 0.1470665614312023 3801 559 "DUF3971-AsmA2 domains protein" +BW25113_4472__5prime yhdP__5prime 0 3389618 3389815 -1 576 0.1111111111111111 198 22 "DUF3971-AsmA2 domains protein" +BW25113_4472__3prime yhdP__3prime 0 3385619 3385816 -1 376 0.13636363636363635 198 27 "DUF3971-AsmA2 domains protein" +BW25113_3247 rng 0 3389685 3391154 -1 4212 0.12789115646258503 1470 188 "ribonuclease G" +BW25113_3247__5prime rng__5prime 0 3391155 3391352 -1 706 0.1414141414141414 198 28 "ribonuclease G" +BW25113_3247__3prime rng__3prime 0 3389487 3389684 -1 566 0.15656565656565657 198 31 "ribonuclease G" +BW25113_3248 yhdE 0 3391144 3391737 -1 2346 0.16666666666666666 594 99 "Maf-like protein" +BW25113_3248__5prime yhdE__5prime 0 3391738 3391935 -1 10 0.010101010101010102 198 2 "Maf-like protein" +BW25113_3248__3prime yhdE__3prime 0 3390946 3391143 -1 586 0.14646464646464646 198 29 "Maf-like protein" +BW25113_3249 mreD 0 3391746 3392234 -1 5 0.002044989775051125 489 1 "cell wall structural complex MreBCD transmembrane component MreD" +BW25113_3249__5prime mreD__5prime 0 3392235 3392432 -1 113 0.03535353535353535 198 7 "cell wall structural complex MreBCD transmembrane component MreD" +BW25113_3249__3prime mreD__3prime 0 3391548 3391745 -1 694 0.18686868686868688 198 37 "cell wall structural complex MreBCD transmembrane component MreD" +BW25113_3250 mreC 0 3392234 3393337 -1 143 0.008152173913043478 1104 9 "cell wall structural complex MreBCD transmembrane component MreC" +BW25113_3250__5prime mreC__5prime 0 3393338 3393535 -1 254 0.05555555555555555 198 11 "cell wall structural complex MreBCD transmembrane component MreC" +BW25113_3250__3prime mreC__3prime 0 3392036 3392233 -1 0 0.0 198 0 "cell wall structural complex MreBCD transmembrane component MreC" +BW25113_3251 mreB 0 3393403 3394446 -1 40 0.0009578544061302681 1044 1 "cell wall structural complex MreBCD and actin-like component MreB" +BW25113_3251__5prime mreB__5prime 0 3394447 3394644 -1 135 0.04040404040404041 198 8 "cell wall structural complex MreBCD and actin-like component MreB" +BW25113_3251__3prime mreB__3prime 0 3393205 3393402 -1 214 0.050505050505050504 198 10 "cell wall structural complex MreBCD and actin-like component MreB" +BW25113_3252 csrD 0 3394751 3396691 -1 7877 0.1648634724368882 1941 320 "targeting factor for csrBC sRNA degradation" +BW25113_3252__5prime csrD__5prime 0 3396692 3396889 -1 661 0.14646464646464646 198 29 "targeting factor for csrBC sRNA degradation" +BW25113_3252__3prime csrD__3prime 0 3394553 3394750 -1 559 0.09595959595959595 198 19 "targeting factor for csrBC sRNA degradation" +BW25113_3253 acuI 0 3396843 3397817 1 3339 0.15076923076923077 975 147 "putative acryloyl-CoA reductase" +BW25113_3253__5prime acuI__5prime 0 3396645 3396842 1 830 0.17676767676767677 198 35 "putative acryloyl-CoA reductase" +BW25113_3253__3prime acuI__3prime 0 3397818 3398015 1 334 0.10606060606060606 198 21 "putative acryloyl-CoA reductase" +BW25113_4697 yrdF 0 3397854 3397996 1 150 0.06993006993006994 143 10 "3397853_3397996" +BW25113_4697__5prime yrdF__5prime 0 3397656 3397853 1 738 0.20707070707070707 198 41 "3397853_3397996" +BW25113_4697__3prime yrdF__3prime 0 3397997 3398194 1 734 0.1414141414141414 198 28 "3397853_3397996" +BW25113_4646 yrdE 0 3397997 3398390 1 1151 0.116751269035533 394 46 "3397996_3398390" +BW25113_4646__5prime yrdE__5prime 0 3397799 3397996 1 257 0.09090909090909091 198 18 "3397996_3398390" +BW25113_4646__3prime yrdE__3prime 0 3398391 3398588 1 41 0.025252525252525252 198 5 "3397996_3398390" +BW25113_3255 accB 0 3398795 3399265 1 0 0.0 471 0 "acetyl CoA carboxylase and BCCP subunit" +BW25113_3255__5prime accB__5prime 0 3398597 3398794 1 89 0.025252525252525252 198 5 "acetyl CoA carboxylase and BCCP subunit" +BW25113_3255__3prime accB__3prime 0 3399266 3399463 1 0 0.0 198 0 "acetyl CoA carboxylase and BCCP subunit" +BW25113_3256 accC 0 3399276 3400625 1 0 0.0 1350 0 "acetyl-CoA carboxylase and biotin carboxylase subunit" +BW25113_3256__5prime accC__5prime 0 3399078 3399275 1 0 0.0 198 0 "acetyl-CoA carboxylase and biotin carboxylase subunit" +BW25113_3256__3prime accC__3prime 0 3400626 3400823 1 66 0.045454545454545456 198 9 "acetyl-CoA carboxylase and biotin carboxylase subunit" +BW25113_3257 yhdT 0 3400734 3400976 1 660 0.11934156378600823 243 29 "DUF997 family putative inner membrane protein" +BW25113_3257__5prime yhdT__5prime 0 3400536 3400733 1 5 0.005050505050505051 198 1 "DUF997 family putative inner membrane protein" +BW25113_3257__3prime yhdT__3prime 0 3400977 3401174 1 405 0.09595959595959595 198 19 "DUF997 family putative inner membrane protein" +BW25113_3258 panF 0 3400966 3402417 1 3838 0.11639118457300275 1452 169 "pantothenate:sodium symporter" +BW25113_3258__5prime panF__5prime 0 3400768 3400965 1 596 0.1111111111111111 198 22 "pantothenate:sodium symporter" +BW25113_3258__3prime panF__3prime 0 3402418 3402615 1 238 0.10101010101010101 198 20 "pantothenate:sodium symporter" +BW25113_3259 prmA 0 3402429 3403310 1 1262 0.07709750566893424 882 68 "methyltransferase for 50S ribosomal subunit protein L11" +BW25113_3259__5prime prmA__5prime 0 3402231 3402428 1 165 0.045454545454545456 198 9 "methyltransferase for 50S ribosomal subunit protein L11" +BW25113_3259__3prime prmA__3prime 0 3403311 3403508 1 173 0.030303030303030304 198 6 "methyltransferase for 50S ribosomal subunit protein L11" +BW25113_3260 dusB 0 3403639 3404604 1 2677 0.12318840579710146 966 119 "tRNA-dihydrouridine synthase B" +BW25113_3260__5prime dusB__5prime 0 3403441 3403638 1 104 0.03535353535353535 198 7 "tRNA-dihydrouridine synthase B" +BW25113_3260__3prime dusB__3prime 0 3404605 3404802 1 388 0.09090909090909091 198 18 "tRNA-dihydrouridine synthase B" +BW25113_3261 fis 0 3404630 3404926 1 969 0.13468013468013468 297 40 "global DNA-binding transcriptional dual regulator" +BW25113_3261__5prime fis__5prime 0 3404432 3404629 1 474 0.10606060606060606 198 21 "global DNA-binding transcriptional dual regulator" +BW25113_3261__3prime fis__3prime 0 3404927 3405124 1 401 0.0707070707070707 198 14 "global DNA-binding transcriptional dual regulator" +BW25113_3262 yhdJ 0 3405012 3405896 1 1917 0.11073446327683616 885 98 "DNA adenine methyltransferase and SAM-dependent" +BW25113_3262__5prime yhdJ__5prime 0 3404814 3405011 1 563 0.10101010101010101 198 20 "DNA adenine methyltransferase and SAM-dependent" +BW25113_3262__3prime yhdJ__3prime 0 3405897 3406094 1 2952 0.41414141414141414 198 82 "DNA adenine methyltransferase and SAM-dependent" +BW25113_3263 yhdU 0 3405980 3406159 1 2527 0.43333333333333335 180 78 "putative membrane protein" +BW25113_3263__5prime yhdU__5prime 0 3405782 3405979 1 1270 0.22727272727272727 198 45 "putative membrane protein" +BW25113_3263__3prime yhdU__3prime 0 3406160 3406357 1 900 0.22727272727272727 198 45 "putative membrane protein" +BW25113_3264 acrS 0 3406162 3406824 -1 6925 0.34238310708898945 663 227 "acrAB operon transcriptional repressor" +BW25113_3264__5prime acrS__5prime 0 3406825 3407022 -1 177 0.08585858585858586 198 17 "acrAB operon transcriptional repressor" +BW25113_3264__3prime acrS__3prime 0 3405964 3406161 -1 2856 0.43434343434343436 198 86 "acrAB operon transcriptional repressor" +BW25113_3265 acrE 0 3407223 3408380 1 6586 0.16666666666666666 1158 193 "cytoplasmic membrane lipoprotein" +BW25113_3265__5prime acrE__5prime 0 3407025 3407222 1 542 0.15656565656565657 198 31 "cytoplasmic membrane lipoprotein" +BW25113_3265__3prime acrE__3prime 0 3408381 3408578 1 606 0.11616161616161616 198 23 "cytoplasmic membrane lipoprotein" +BW25113_3266 acrF 0 3408392 3411496 1 8633 0.13494363929146538 3105 419 "multidrug efflux system protein" +BW25113_3266__5prime acrF__5prime 0 3408194 3408391 1 223 0.0707070707070707 198 14 "multidrug efflux system protein" +BW25113_3266__3prime acrF__3prime 0 3411497 3411694 1 190 0.09595959595959595 198 19 "multidrug efflux system protein" +BW25113_3267 yhdV 0 3411749 3411970 1 5909 0.5945945945945946 222 132 "putative outer membrane protein" +BW25113_3267__5prime yhdV__5prime 0 3411551 3411748 1 441 0.14646464646464646 198 29 "putative outer membrane protein" +BW25113_3267__3prime yhdV__3prime 0 3411971 3412168 1 1510 0.26262626262626265 198 52 "putative outer membrane protein" +BW25113_3268 yhdW 0 3412401 3413425 1 2833 0.12 1025 123 "3412400_3413425" +BW25113_3268__5prime yhdW__5prime 0 3412203 3412400 1 968 0.08585858585858586 198 17 "3412400_3413425" +BW25113_3268__3prime yhdW__3prime 0 3413426 3413623 1 559 0.1414141414141414 198 28 "3412400_3413425" +BW25113_3269 yhdX 0 3413493 3414674 1 3196 0.11505922165820642 1182 136 "putative amino-acid transporter subunit" +BW25113_3269__5prime yhdX__5prime 0 3413295 3413492 1 424 0.09090909090909091 198 18 "putative amino-acid transporter subunit" +BW25113_3269__3prime yhdX__3prime 0 3414675 3414872 1 738 0.15151515151515152 198 30 "putative amino-acid transporter subunit" +BW25113_3269 yhdX 0 3414216 3414326 1 569 0.22522522522522523 111 25 "3414215_3414326" +BW25113_3269__5prime yhdX__5prime 0 3414018 3414215 1 1117 0.18686868686868688 198 37 "3414215_3414326" +BW25113_3269__3prime yhdX__3prime 0 3414327 3414524 1 308 0.08080808080808081 198 16 "3414215_3414326" +BW25113_3270 yhdY 0 3414684 3415787 1 1910 0.09057971014492754 1104 100 "putative amino-acid transporter subunit" +BW25113_3270__5prime yhdY__5prime 0 3414486 3414683 1 265 0.06565656565656566 198 13 "putative amino-acid transporter subunit" +BW25113_3270__3prime yhdY__3prime 0 3415788 3415985 1 181 0.025252525252525252 198 5 "putative amino-acid transporter subunit" +BW25113_3271 yhdZ 0 3415795 3416553 1 1354 0.07114624505928854 759 54 "putative amino-acid transporter subunit" +BW25113_3271__5prime yhdZ__5prime 0 3415597 3415794 1 229 0.08585858585858586 198 17 "putative amino-acid transporter subunit" +BW25113_3271__3prime yhdZ__3prime 0 3416554 3416751 1 254 0.06565656565656566 198 13 "putative amino-acid transporter subunit" +BW25113_3272 rrfF 0 3416782 3416901 -1 77 0.05 120 6 "5S ribosomal RNA of rrnD operon" +BW25113_3272__5prime rrfF__5prime 0 3416902 3417099 -1 116 0.050505050505050504 198 10 "5S ribosomal RNA of rrnD operon" +BW25113_3272__3prime rrfF__3prime 0 3416584 3416781 -1 261 0.0707070707070707 198 14 "5S ribosomal RNA of rrnD operon" +BW25113_3273 thrV 0 3416939 3417014 -1 101 0.09210526315789473 76 7 "tRNA-Thr" +BW25113_3273__5prime thrV__5prime 0 3417015 3417212 -1 130 0.05555555555555555 198 11 "tRNA-Thr" +BW25113_3273__3prime thrV__3prime 0 3416741 3416938 -1 130 0.050505050505050504 198 10 "tRNA-Thr" +BW25113_3274 rrfD 0 3417027 3417146 -1 62 0.05 120 6 "5S ribosomal RNA of rrnD operon" +BW25113_3274__5prime rrfD__5prime 0 3417147 3417344 -1 167 0.0707070707070707 198 14 "5S ribosomal RNA of rrnD operon" +BW25113_3274__3prime rrfD__3prime 0 3416829 3417026 -1 153 0.05555555555555555 198 11 "5S ribosomal RNA of rrnD operon" +BW25113_3275 rrlD 0 3417239 3420142 -1 2676 0.06818181818181818 2904 198 "23S ribosomal RNA of rrnD operon" +BW25113_3275__5prime rrlD__5prime 0 3420143 3420340 -1 119 0.030303030303030304 198 6 "23S ribosomal RNA of rrnD operon" +BW25113_3275__3prime rrlD__3prime 0 3417041 3417238 -1 130 0.05555555555555555 198 11 "23S ribosomal RNA of rrnD operon" +3417593_3417596 3417593_3417596 0 3417594 3417596 1 0 0.0 3 0 "3417593_3417596" +3417593_3417596__5prime 3417593_3417596__5prime 0 3417396 3417593 1 104 0.05555555555555555 198 11 "3417593_3417596" +3417593_3417596__3prime 3417593_3417596__3prime 0 3417597 3417794 1 200 0.04040404040404041 198 8 "3417593_3417596" +BW25113_3276 alaU 0 3420317 3420392 -1 81 0.05263157894736842 76 4 "tRNA-Ala" +BW25113_3276__5prime alaU__5prime 0 3420393 3420590 -1 50 0.025252525252525252 198 5 "tRNA-Ala" +BW25113_3276__3prime alaU__3prime 0 3420119 3420316 -1 121 0.04040404040404041 198 8 "tRNA-Ala" +BW25113_3277 ileU 0 3420435 3420511 -1 18 0.025974025974025976 77 2 "tRNA-Ile" +BW25113_3277__5prime ileU__5prime 0 3420512 3420709 -1 89 0.045454545454545456 198 9 "tRNA-Ile" +BW25113_3277__3prime ileU__3prime 0 3420237 3420434 -1 89 0.025252525252525252 198 5 "tRNA-Ile" +BW25113_3278 rrsD 0 3420580 3422121 -1 1618 0.07392996108949416 1542 114 "16S ribosomal RNA of rrnD operon" +BW25113_3278__5prime rrsD__5prime 0 3422122 3422319 -1 135 0.050505050505050504 198 10 "16S ribosomal RNA of rrnD operon" +BW25113_3278__3prime rrsD__3prime 0 3420382 3420579 -1 56 0.030303030303030304 198 6 "16S ribosomal RNA of rrnD operon" +BW25113_3279 yrdA 0 3422595 3423149 1 2793 0.23243243243243245 555 129 "bacterial transferase hexapeptide domain protein" +BW25113_3279__5prime yrdA__5prime 0 3422397 3422594 1 217 0.06060606060606061 198 12 "bacterial transferase hexapeptide domain protein" +BW25113_3279__3prime yrdA__3prime 0 3423150 3423347 1 1112 0.1919191919191919 198 38 "bacterial transferase hexapeptide domain protein" +BW25113_3280 yrdB 0 3423125 3423382 -1 1673 0.22868217054263565 258 59 "DUF1488 family protein" +BW25113_3280__5prime yrdB__5prime 0 3423383 3423580 -1 1252 0.25757575757575757 198 51 "DUF1488 family protein" +BW25113_3280__3prime yrdB__3prime 0 3422927 3423124 -1 917 0.22727272727272727 198 45 "DUF1488 family protein" +BW25113_3281 aroE 0 3423379 3424197 -1 4847 0.2503052503052503 819 205 "dehydroshikimate reductase and NAD(P)-binding" +BW25113_3281__5prime aroE__5prime 0 3424198 3424395 -1 283 0.03535353535353535 198 7 "dehydroshikimate reductase and NAD(P)-binding" +BW25113_3281__3prime aroE__3prime 0 3423181 3423378 -1 1008 0.1919191919191919 198 38 "dehydroshikimate reductase and NAD(P)-binding" +BW25113_3282 tsaC 0 3424202 3424774 -1 353 0.013961605584642234 573 8 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein and threonine-dependent ADP-forming ATPase" +BW25113_3282__5prime tsaC__5prime 0 3424775 3424972 -1 961 0.19696969696969696 198 39 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein and threonine-dependent ADP-forming ATPase" +BW25113_3282__3prime tsaC__3prime 0 3424004 3424201 -1 820 0.1919191919191919 198 38 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein and threonine-dependent ADP-forming ATPase" +BW25113_3283 yrdD 0 3424779 3425321 -1 2638 0.21178637200736647 543 115 "putative DNA topoisomerase" +BW25113_3283__5prime yrdD__5prime 0 3425322 3425519 -1 931 0.25252525252525254 198 50 "putative DNA topoisomerase" +BW25113_3283__3prime yrdD__3prime 0 3424581 3424778 -1 198 0.020202020202020204 198 4 "putative DNA topoisomerase" +BW25113_3284 smg 0 3425350 3425823 -1 2143 0.20675105485232068 474 98 "DUF494 family putative periplasmic protein" +BW25113_3284__5prime smg__5prime 0 3425824 3426021 -1 1354 0.25757575757575757 198 51 "DUF494 family putative periplasmic protein" +BW25113_3284__3prime smg__3prime 0 3425152 3425349 -1 1182 0.24242424242424243 198 48 "DUF494 family putative periplasmic protein" +BW25113_4473 smf 0 3425795 3426919 -1 4228 0.18133333333333335 1125 204 "DNA recombination-mediator A family protein" +BW25113_4473__5prime smf__5prime 0 3426920 3427117 -1 378 0.08080808080808081 198 16 "DNA recombination-mediator A family protein" +BW25113_4473__3prime smf__3prime 0 3425597 3425794 -1 924 0.20202020202020202 198 40 "DNA recombination-mediator A family protein" +BW25113_3287 def 0 3427049 3427558 1 168 0.013725490196078431 510 7 "peptide deformylase" +BW25113_3287__5prime def__5prime 0 3426851 3427048 1 553 0.12121212121212122 198 24 "peptide deformylase" +BW25113_3287__3prime def__3prime 0 3427559 3427756 1 345 0.025252525252525252 198 5 "peptide deformylase" +BW25113_3288 fmt 0 3427573 3428520 1 151 0.012658227848101266 948 12 "10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase" +BW25113_3288__5prime fmt__5prime 0 3427375 3427572 1 484 0.05555555555555555 198 11 "10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase" +BW25113_3288__3prime fmt__3prime 0 3428521 3428718 1 463 0.15151515151515152 198 30 "10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase" +BW25113_3289 rsmB 0 3428566 3429855 1 4045 0.1573643410852713 1290 203 "16S rRNA m(5)C967 methyltransferase and SAM-dependent" +BW25113_3289__5prime rsmB__5prime 0 3428368 3428565 1 258 0.09090909090909091 198 18 "16S rRNA m(5)C967 methyltransferase and SAM-dependent" +BW25113_3289__3prime rsmB__3prime 0 3429856 3430053 1 511 0.16666666666666666 198 33 "16S rRNA m(5)C967 methyltransferase and SAM-dependent" +BW25113_3290 trkA 0 3429877 3431253 1 3434 0.14742193173565724 1377 203 "NAD-binding component of TrK potassium transporter" +BW25113_3290__5prime trkA__5prime 0 3429679 3429876 1 578 0.10606060606060606 198 21 "NAD-binding component of TrK potassium transporter" +BW25113_3290__3prime trkA__3prime 0 3431254 3431451 1 857 0.23737373737373738 198 47 "NAD-binding component of TrK potassium transporter" +BW25113_3291 mscL 0 3431383 3431793 1 4319 0.3236009732360097 411 133 "mechanosensitive channel protein and high conductance" +BW25113_3291__5prime mscL__5prime 0 3431185 3431382 1 601 0.1919191919191919 198 38 "mechanosensitive channel protein and high conductance" +BW25113_3291__3prime mscL__3prime 0 3431794 3431991 1 1781 0.30808080808080807 198 61 "mechanosensitive channel protein and high conductance" +BW25113_4550 arfA 0 3431790 3432008 -1 1900 0.3013698630136986 219 66 "alternate ribosome-rescue factor A" +BW25113_4550__5prime arfA__5prime 0 3432009 3432206 -1 901 0.10101010101010101 198 20 "alternate ribosome-rescue factor A" +BW25113_4550__3prime arfA__3prime 0 3431592 3431789 -1 1280 0.21717171717171718 198 43 "alternate ribosome-rescue factor A" +BW25113_3292 zntR 0 3432064 3432489 -1 1352 0.13145539906103287 426 56 "zntA gene transcriptional activator" +BW25113_3292__5prime zntR__5prime 0 3432490 3432687 -1 408 0.06565656565656566 198 13 "zntA gene transcriptional activator" +BW25113_3292__3prime zntR__3prime 0 3431866 3432063 -1 1128 0.21212121212121213 198 42 "zntA gene transcriptional activator" +BW25113_3293 yhdN 0 3432500 3432868 -1 876 0.10298102981029811 369 38 "DUF1992 family protein" +BW25113_3293__5prime yhdN__5prime 0 3432869 3433066 -1 30 0.005050505050505051 198 1 "DUF1992 family protein" +BW25113_3293__3prime yhdN__3prime 0 3432302 3432499 -1 310 0.13636363636363635 198 27 "DUF1992 family protein" +BW25113_3294 rplQ 0 3432975 3433358 -1 0 0.0 384 0 "50S ribosomal subunit protein L17" +BW25113_3294__5prime rplQ__5prime 0 3433359 3433556 -1 0 0.0 198 0 "50S ribosomal subunit protein L17" +BW25113_3294__3prime rplQ__3prime 0 3432777 3432974 -1 407 0.09090909090909091 198 18 "50S ribosomal subunit protein L17" +BW25113_3295 rpoA 0 3433399 3434388 -1 0 0.0 990 0 "RNA polymerase and alpha subunit" +BW25113_3295__5prime rpoA__5prime 0 3434389 3434586 -1 0 0.0 198 0 "RNA polymerase and alpha subunit" +BW25113_3295__3prime rpoA__3prime 0 3433201 3433398 -1 0 0.0 198 0 "RNA polymerase and alpha subunit" +BW25113_3296 rpsD 0 3434414 3435034 -1 0 0.0 621 0 "30S ribosomal subunit protein S4" +BW25113_3296__5prime rpsD__5prime 0 3435035 3435232 -1 0 0.0 198 0 "30S ribosomal subunit protein S4" +BW25113_3296__3prime rpsD__3prime 0 3434216 3434413 -1 0 0.0 198 0 "30S ribosomal subunit protein S4" +BW25113_3297 rpsK 0 3435068 3435457 -1 0 0.0 390 0 "30S ribosomal subunit protein S11" +BW25113_3297__5prime rpsK__5prime 0 3435458 3435655 -1 0 0.0 198 0 "30S ribosomal subunit protein S11" +BW25113_3297__3prime rpsK__3prime 0 3434870 3435067 -1 0 0.0 198 0 "30S ribosomal subunit protein S11" +BW25113_3298 rpsM 0 3435474 3435830 -1 0 0.0 357 0 "30S ribosomal subunit protein S13" +BW25113_3298__5prime rpsM__5prime 0 3435831 3436028 -1 0 0.0 198 0 "30S ribosomal subunit protein S13" +BW25113_3298__3prime rpsM__3prime 0 3435276 3435473 -1 0 0.0 198 0 "30S ribosomal subunit protein S13" +BW25113_3299 rpmJ 0 3435977 3436093 -1 0 0.0 117 0 "50S ribosomal subunit protein L36" +BW25113_3299__5prime rpmJ__5prime 0 3436094 3436291 -1 0 0.0 198 0 "50S ribosomal subunit protein L36" +BW25113_3299__3prime rpmJ__3prime 0 3435779 3435976 -1 0 0.0 198 0 "50S ribosomal subunit protein L36" +BW25113_3300 secY 0 3436125 3437456 -1 0 0.0 1332 0 "preprotein translocase membrane subunit" +BW25113_3300__5prime secY__5prime 0 3437457 3437654 -1 0 0.0 198 0 "preprotein translocase membrane subunit" +BW25113_3300__3prime secY__3prime 0 3435927 3436124 -1 0 0.0 198 0 "preprotein translocase membrane subunit" +BW25113_3301 rplO 0 3437464 3437898 -1 0 0.0 435 0 "50S ribosomal subunit protein L15" +BW25113_3301__5prime rplO__5prime 0 3437899 3438096 -1 0 0.0 198 0 "50S ribosomal subunit protein L15" +BW25113_3301__3prime rplO__3prime 0 3437266 3437463 -1 0 0.0 198 0 "50S ribosomal subunit protein L15" +BW25113_3302 rpmD 0 3437902 3438081 -1 0 0.0 180 0 "50S ribosomal subunit protein L30" +BW25113_3302__5prime rpmD__5prime 0 3438082 3438279 -1 0 0.0 198 0 "50S ribosomal subunit protein L30" +BW25113_3302__3prime rpmD__3prime 0 3437704 3437901 -1 0 0.0 198 0 "50S ribosomal subunit protein L30" +BW25113_3303 rpsE 0 3438085 3438588 -1 0 0.0 504 0 "30S ribosomal subunit protein S5" +BW25113_3303__5prime rpsE__5prime 0 3438589 3438786 -1 0 0.0 198 0 "30S ribosomal subunit protein S5" +BW25113_3303__3prime rpsE__3prime 0 3437887 3438084 -1 0 0.0 198 0 "30S ribosomal subunit protein S5" +BW25113_3304 rplR 0 3438603 3438956 -1 0 0.0 354 0 "50S ribosomal subunit protein L18" +BW25113_3304__5prime rplR__5prime 0 3438957 3439154 -1 0 0.0 198 0 "50S ribosomal subunit protein L18" +BW25113_3304__3prime rplR__3prime 0 3438405 3438602 -1 0 0.0 198 0 "50S ribosomal subunit protein L18" +BW25113_3305 rplF 0 3438966 3439499 -1 0 0.0 534 0 "50S ribosomal subunit protein L6" +BW25113_3305__5prime rplF__5prime 0 3439500 3439697 -1 0 0.0 198 0 "50S ribosomal subunit protein L6" +BW25113_3305__3prime rplF__3prime 0 3438768 3438965 -1 0 0.0 198 0 "50S ribosomal subunit protein L6" +BW25113_3306 rpsH 0 3439512 3439904 -1 0 0.0 393 0 "30S ribosomal subunit protein S8" +BW25113_3306__5prime rpsH__5prime 0 3439905 3440102 -1 0 0.0 198 0 "30S ribosomal subunit protein S8" +BW25113_3306__3prime rpsH__3prime 0 3439314 3439511 -1 0 0.0 198 0 "30S ribosomal subunit protein S8" +BW25113_3307 rpsN 0 3439938 3440243 -1 0 0.0 306 0 "30S ribosomal subunit protein S14" +BW25113_3307__5prime rpsN__5prime 0 3440244 3440441 -1 0 0.0 198 0 "30S ribosomal subunit protein S14" +BW25113_3307__3prime rpsN__3prime 0 3439740 3439937 -1 0 0.0 198 0 "30S ribosomal subunit protein S14" +BW25113_3308 rplE 0 3440258 3440797 -1 0 0.0 540 0 "50S ribosomal subunit protein L5" +BW25113_3308__5prime rplE__5prime 0 3440798 3440995 -1 0 0.0 198 0 "50S ribosomal subunit protein L5" +BW25113_3308__3prime rplE__3prime 0 3440060 3440257 -1 0 0.0 198 0 "50S ribosomal subunit protein L5" +BW25113_3309 rplX 0 3440812 3441126 -1 0 0.0 315 0 "50S ribosomal subunit protein L24" +BW25113_3309__5prime rplX__5prime 0 3441127 3441324 -1 0 0.0 198 0 "50S ribosomal subunit protein L24" +BW25113_3309__3prime rplX__3prime 0 3440614 3440811 -1 0 0.0 198 0 "50S ribosomal subunit protein L24" +BW25113_3310 rplN 0 3441137 3441508 -1 0 0.0 372 0 "50S ribosomal subunit protein L14" +BW25113_3310__5prime rplN__5prime 0 3441509 3441706 -1 44 0.015151515151515152 198 3 "50S ribosomal subunit protein L14" +BW25113_3310__3prime rplN__3prime 0 3440939 3441136 -1 0 0.0 198 0 "50S ribosomal subunit protein L14" +BW25113_3311 rpsQ 0 3441673 3441927 -1 39 0.00784313725490196 255 2 "30S ribosomal subunit protein S17" +BW25113_3311__5prime rpsQ__5prime 0 3441928 3442125 -1 0 0.0 198 0 "30S ribosomal subunit protein S17" +BW25113_3311__3prime rpsQ__3prime 0 3441475 3441672 -1 5 0.005050505050505051 198 1 "30S ribosomal subunit protein S17" +BW25113_3312 rpmC 0 3441927 3442118 -1 0 0.0 192 0 "50S ribosomal subunit protein L29" +BW25113_3312__5prime rpmC__5prime 0 3442119 3442316 -1 0 0.0 198 0 "50S ribosomal subunit protein L29" +BW25113_3312__3prime rpmC__3prime 0 3441729 3441926 -1 0 0.0 198 0 "50S ribosomal subunit protein L29" +BW25113_3313 rplP 0 3442118 3442528 -1 0 0.0 411 0 "50S ribosomal subunit protein L16" +BW25113_3313__5prime rplP__5prime 0 3442529 3442726 -1 0 0.0 198 0 "50S ribosomal subunit protein L16" +BW25113_3313__3prime rplP__3prime 0 3441920 3442117 -1 0 0.0 198 0 "50S ribosomal subunit protein L16" +BW25113_3314 rpsC 0 3442541 3443242 -1 0 0.0 702 0 "30S ribosomal subunit protein S3" +BW25113_3314__5prime rpsC__5prime 0 3443243 3443440 -1 0 0.0 198 0 "30S ribosomal subunit protein S3" +BW25113_3314__3prime rpsC__3prime 0 3442343 3442540 -1 0 0.0 198 0 "30S ribosomal subunit protein S3" +BW25113_3315 rplV 0 3443260 3443592 -1 0 0.0 333 0 "50S ribosomal subunit protein L22" +BW25113_3315__5prime rplV__5prime 0 3443593 3443790 -1 5 0.005050505050505051 198 1 "50S ribosomal subunit protein L22" +BW25113_3315__3prime rplV__3prime 0 3443062 3443259 -1 0 0.0 198 0 "50S ribosomal subunit protein L22" +BW25113_3316 rpsS 0 3443607 3443885 -1 5 0.0035842293906810036 279 1 "30S ribosomal subunit protein S19" +BW25113_3316__5prime rpsS__5prime 0 3443886 3444083 -1 0 0.0 198 0 "30S ribosomal subunit protein S19" +BW25113_3316__3prime rpsS__3prime 0 3443409 3443606 -1 0 0.0 198 0 "30S ribosomal subunit protein S19" +BW25113_3317 rplB 0 3443902 3444723 -1 0 0.0 822 0 "50S ribosomal subunit protein L2" +BW25113_3317__5prime rplB__5prime 0 3444724 3444921 -1 28 0.015151515151515152 198 3 "50S ribosomal subunit protein L2" +BW25113_3317__3prime rplB__3prime 0 3443704 3443901 -1 5 0.005050505050505051 198 1 "50S ribosomal subunit protein L2" +BW25113_3318 rplW 0 3444741 3445043 -1 0 0.0 303 0 "50S ribosomal subunit protein L23" +BW25113_3318__5prime rplW__5prime 0 3445044 3445241 -1 0 0.0 198 0 "50S ribosomal subunit protein L23" +BW25113_3318__3prime rplW__3prime 0 3444543 3444740 -1 28 0.015151515151515152 198 3 "50S ribosomal subunit protein L23" +BW25113_3319 rplD 0 3445040 3445645 -1 0 0.0 606 0 "50S ribosomal subunit protein L4" +BW25113_3319__5prime rplD__5prime 0 3445646 3445843 -1 0 0.0 198 0 "50S ribosomal subunit protein L4" +BW25113_3319__3prime rplD__3prime 0 3444842 3445039 -1 0 0.0 198 0 "50S ribosomal subunit protein L4" +BW25113_3320 rplC 0 3445656 3446285 -1 26 0.004761904761904762 630 3 "50S ribosomal subunit protein L3" +BW25113_3320__5prime rplC__5prime 0 3446286 3446483 -1 0 0.0 198 0 "50S ribosomal subunit protein L3" +BW25113_3320__3prime rplC__3prime 0 3445458 3445655 -1 0 0.0 198 0 "50S ribosomal subunit protein L3" +BW25113_3321 rpsJ 0 3446318 3446629 -1 0 0.0 312 0 "30S ribosomal subunit protein S10" +BW25113_3321__5prime rpsJ__5prime 0 3446630 3446827 -1 0 0.0 198 0 "30S ribosomal subunit protein S10" +BW25113_3321__3prime rpsJ__3prime 0 3446120 3446317 -1 0 0.0 198 0 "30S ribosomal subunit protein S10" +BW25113_3322 gspB 0 3446867 3447286 -1 2428 0.2785714285714286 420 117 "part of gsp divergon involved in type II protein secretion" +BW25113_3322__5prime gspB__5prime 0 3447287 3447484 -1 1482 0.3282828282828283 198 65 "part of gsp divergon involved in type II protein secretion" +BW25113_3322__3prime gspB__3prime 0 3446669 3446866 -1 113 0.030303030303030304 198 6 "part of gsp divergon involved in type II protein secretion" +BW25113_3323 gspA 0 3447288 3448757 -1 20783 0.42925170068027213 1470 631 "general secretory pathway component and cryptic" +BW25113_3323__5prime gspA__5prime 0 3448758 3448955 -1 1219 0.19696969696969696 198 39 "general secretory pathway component and cryptic" +BW25113_3323__3prime gspA__3prime 0 3447090 3447287 -1 1703 0.35353535353535354 198 70 "general secretory pathway component and cryptic" +BW25113_3324 gspC 0 3448937 3449752 1 11265 0.29901960784313725 816 244 "general secretory pathway component and cryptic" +BW25113_3324__5prime gspC__5prime 0 3448739 3448936 1 628 0.1717171717171717 198 34 "general secretory pathway component and cryptic" +BW25113_3324__3prime gspC__3prime 0 3449753 3449950 1 1155 0.2474747474747475 198 49 "general secretory pathway component and cryptic" +BW25113_3325 gspD 0 3449736 3451688 1 8549 0.17665130568356374 1953 345 "general secretory pathway component and cryptic" +BW25113_3325__5prime gspD__5prime 0 3449538 3449735 1 2558 0.31313131313131315 198 62 "general secretory pathway component and cryptic" +BW25113_3325__3prime gspD__3prime 0 3451689 3451886 1 775 0.1919191919191919 198 38 "general secretory pathway component and cryptic" +BW25113_3326 gspE 0 3451698 3453179 1 6838 0.1632928475033738 1482 242 "general secretory pathway component and cryptic" +BW25113_3326__5prime gspE__5prime 0 3451500 3451697 1 596 0.09090909090909091 198 18 "general secretory pathway component and cryptic" +BW25113_3326__3prime gspE__3prime 0 3453180 3453377 1 394 0.11616161616161616 198 23 "general secretory pathway component and cryptic" +BW25113_3327 gspF 0 3453176 3454372 1 4558 0.1595655806182122 1197 191 "general secretory pathway component and cryptic" +BW25113_3327__5prime gspF__5prime 0 3452978 3453175 1 551 0.13636363636363635 198 27 "general secretory pathway component and cryptic" +BW25113_3327__3prime gspF__3prime 0 3454373 3454570 1 470 0.18181818181818182 198 36 "general secretory pathway component and cryptic" +BW25113_3328 gspG 0 3454382 3454819 1 1460 0.1872146118721461 438 82 "pseudopilin and cryptic and general secretion pathway" +BW25113_3328__5prime gspG__5prime 0 3454184 3454381 1 866 0.20202020202020202 198 40 "pseudopilin and cryptic and general secretion pathway" +BW25113_3328__3prime gspG__3prime 0 3454820 3455017 1 1247 0.23232323232323232 198 46 "pseudopilin and cryptic and general secretion pathway" +BW25113_3329 gspH 0 3454827 3455336 1 2598 0.2019607843137255 510 103 "putative general secretory pathway component and cryptic" +BW25113_3329__5prime gspH__5prime 0 3454629 3454826 1 690 0.19696969696969696 198 39 "putative general secretory pathway component and cryptic" +BW25113_3329__3prime gspH__3prime 0 3455337 3455534 1 550 0.13131313131313133 198 26 "putative general secretory pathway component and cryptic" +BW25113_3330 gspI 0 3455333 3455710 1 1707 0.18783068783068782 378 71 "general secretory pathway component and cryptic" +BW25113_3330__5prime gspI__5prime 0 3455135 3455332 1 755 0.15656565656565657 198 31 "general secretory pathway component and cryptic" +BW25113_3330__3prime gspI__3prime 0 3455711 3455908 1 488 0.12626262626262627 198 25 "general secretory pathway component and cryptic" +BW25113_3331 gspJ 0 3455703 3456290 1 2173 0.17517006802721088 588 103 "putative general secretory pathway component and cryptic" +BW25113_3331__5prime gspJ__5prime 0 3455505 3455702 1 1158 0.23737373737373738 198 47 "putative general secretory pathway component and cryptic" +BW25113_3331__3prime gspJ__3prime 0 3456291 3456488 1 501 0.20707070707070707 198 41 "putative general secretory pathway component and cryptic" +BW25113_3332 gspK 0 3456283 3457266 1 5326 0.22560975609756098 984 222 "general secretory pathway component and cryptic" +BW25113_3332__5prime gspK__5prime 0 3456085 3456282 1 485 0.15656565656565657 198 31 "general secretory pathway component and cryptic" +BW25113_3332__3prime gspK__3prime 0 3457267 3457464 1 621 0.24242424242424243 198 48 "general secretory pathway component and cryptic" +BW25113_3333 gspL 0 3457281 3458444 1 6886 0.20876288659793815 1164 243 "general secretory pathway component and cryptic" +BW25113_3333__5prime gspL__5prime 0 3457083 3457280 1 1043 0.25252525252525254 198 50 "general secretory pathway component and cryptic" +BW25113_3333__3prime gspL__3prime 0 3458445 3458642 1 550 0.1111111111111111 198 22 "general secretory pathway component and cryptic" +BW25113_3334 gspM 0 3458441 3458902 1 2071 0.16666666666666666 462 77 "general secretory pathway component and cryptic" +BW25113_3334__5prime gspM__5prime 0 3458243 3458440 1 2082 0.2676767676767677 198 53 "general secretory pathway component and cryptic" +BW25113_3334__3prime gspM__3prime 0 3458903 3459100 1 1028 0.2676767676767677 198 53 "general secretory pathway component and cryptic" +BW25113_3335 gspO 0 3458902 3459579 1 3923 0.25958702064896755 678 176 "bifunctional prepilin leader peptidase/ methylase" +BW25113_3335__5prime gspO__5prime 0 3458704 3458901 1 1159 0.20707070707070707 198 41 "bifunctional prepilin leader peptidase/ methylase" +BW25113_3335__3prime gspO__3prime 0 3459580 3459777 1 895 0.17676767676767677 198 35 "bifunctional prepilin leader peptidase/ methylase" +BW25113_3336 bfr 0 3459608 3460084 -1 3256 0.20545073375262055 477 98 "bacterioferritin and iron storage and detoxification protein" +BW25113_3336__5prime bfr__5prime 0 3460085 3460282 -1 1952 0.25757575757575757 198 51 "bacterioferritin and iron storage and detoxification protein" +BW25113_3336__3prime bfr__3prime 0 3459410 3459607 -1 971 0.21717171717171718 198 43 "bacterioferritin and iron storage and detoxification protein" +BW25113_3337 bfd 0 3460156 3460350 -1 1440 0.2358974358974359 195 46 "bacterioferritin-associated ferredoxin" +BW25113_3337__5prime bfd__5prime 0 3460351 3460548 -1 436 0.10606060606060606 198 21 "bacterioferritin-associated ferredoxin" +BW25113_3337__3prime bfd__3prime 0 3459958 3460155 -1 1804 0.20707070707070707 198 41 "bacterioferritin-associated ferredoxin" +BW25113_3338 chiA 0 3460519 3463212 -1 24554 0.25686711210096513 2694 692 "periplasmic endochitinase" +BW25113_3338__5prime chiA__5prime 0 3463213 3463410 -1 12 0.010101010101010102 198 2 "periplasmic endochitinase" +BW25113_3338__3prime chiA__3prime 0 3460321 3460518 -1 697 0.14646464646464646 198 29 "periplasmic endochitinase" +BW25113_3339 tufA 0 3463504 3464688 -1 1637 0.09282700421940929 1185 110 "translation elongation factor EF-Tu 1" +BW25113_3339__5prime tufA__5prime 0 3464689 3464886 -1 231 0.06565656565656566 198 13 "translation elongation factor EF-Tu 1" +BW25113_3339__3prime tufA__3prime 0 3463306 3463503 -1 72 0.030303030303030304 198 6 "translation elongation factor EF-Tu 1" +BW25113_3340 fusA 0 3464759 3466873 -1 118 0.0018912529550827422 2115 4 "protein chain elongation factor EF-G and GTP-binding" +BW25113_3340__5prime fusA__5prime 0 3466874 3467071 -1 57 0.005050505050505051 198 1 "protein chain elongation factor EF-G and GTP-binding" +BW25113_3340__3prime fusA__3prime 0 3464561 3464758 -1 241 0.09595959595959595 198 19 "protein chain elongation factor EF-G and GTP-binding" +BW25113_3341 rpsG 0 3466901 3467440 -1 57 0.001851851851851852 540 1 "30S ribosomal subunit protein S7" +BW25113_3341__5prime rpsG__5prime 0 3467441 3467638 -1 0 0.0 198 0 "30S ribosomal subunit protein S7" +BW25113_3341__3prime rpsG__3prime 0 3466703 3466900 -1 0 0.0 198 0 "30S ribosomal subunit protein S7" +BW25113_3342 rpsL 0 3467537 3467911 -1 0 0.0 375 0 "30S ribosomal subunit protein S12" +BW25113_3342__5prime rpsL__5prime 0 3467912 3468109 -1 111 0.04040404040404041 198 8 "30S ribosomal subunit protein S12" +BW25113_3342__3prime rpsL__3prime 0 3467339 3467536 -1 0 0.0 198 0 "30S ribosomal subunit protein S12" +BW25113_3343 tusB 0 3468037 3468324 -1 278 0.07291666666666667 288 21 "mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" +BW25113_3343__5prime tusB__5prime 0 3468325 3468522 -1 169 0.07575757575757576 198 15 "mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" +BW25113_3343__3prime tusB__3prime 0 3467839 3468036 -1 34 0.010101010101010102 198 2 "mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" +BW25113_3344 tusC 0 3468332 3468691 -1 435 0.08611111111111111 360 31 "mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" +BW25113_3344__5prime tusC__5prime 0 3468692 3468889 -1 437 0.12121212121212122 198 24 "mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" +BW25113_3344__3prime tusC__3prime 0 3468134 3468331 -1 201 0.07575757575757576 198 15 "mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" +BW25113_3345 tusD 0 3468691 3469077 -1 634 0.10335917312661498 387 40 "sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis" +BW25113_3345__5prime tusD__5prime 0 3469078 3469275 -1 302 0.09595959595959595 198 19 "sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis" +BW25113_3345__3prime tusD__3prime 0 3468493 3468690 -1 305 0.09595959595959595 198 19 "sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis" +BW25113_3346 yheO 0 3469077 3469799 -1 1667 0.1078838174273859 723 78 "putative PAS domain-containing DNA-binding transcriptional regulator" +BW25113_3346__5prime yheO__5prime 0 3469800 3469997 -1 220 0.04040404040404041 198 8 "putative PAS domain-containing DNA-binding transcriptional regulator" +BW25113_3346__3prime yheO__3prime 0 3468879 3469076 -1 217 0.08585858585858586 198 17 "putative PAS domain-containing DNA-binding transcriptional regulator" +BW25113_3347 fkpA 0 3469966 3470778 -1 4877 0.1992619926199262 813 162 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_3347__5prime fkpA__5prime 0 3470779 3470976 -1 900 0.1919191919191919 198 38 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_3347__3prime fkpA__3prime 0 3469768 3469965 -1 243 0.050505050505050504 198 10 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_3348 slyX 0 3470999 3471217 1 295 0.0867579908675799 219 19 "phi X174 lysis protein" +BW25113_3348__5prime slyX__5prime 0 3470801 3470998 1 585 0.15151515151515152 198 30 "phi X174 lysis protein" +BW25113_3348__3prime slyX__3prime 0 3471218 3471415 1 687 0.15151515151515152 198 30 "phi X174 lysis protein" +BW25113_3349 slyD 0 3471266 3471856 -1 2902 0.23519458544839256 591 139 "FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)" +BW25113_3349__5prime slyD__5prime 0 3471857 3472054 -1 569 0.10101010101010101 198 20 "FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)" +BW25113_3349__3prime slyD__3prime 0 3471068 3471265 -1 203 0.0707070707070707 198 14 "FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)" +BW25113_4551 yheV 0 3471951 3472151 -1 343 0.0945273631840796 201 19 "DUF2387 family putative metal-binding protein" +BW25113_4551__5prime yheV__5prime 0 3472152 3472349 -1 837 0.1414141414141414 198 28 "DUF2387 family putative metal-binding protein" +BW25113_4551__3prime yheV__3prime 0 3471753 3471950 -1 1829 0.3333333333333333 198 66 "DUF2387 family putative metal-binding protein" +BW25113_3350 kefB 0 3472161 3473966 -1 7125 0.15891472868217055 1806 287 "potassium:proton antiporter" +BW25113_3350__5prime kefB__5prime 0 3473967 3474164 -1 1213 0.25757575757575757 198 51 "potassium:proton antiporter" +BW25113_3350__3prime kefB__3prime 0 3471963 3472160 -1 476 0.10606060606060606 198 21 "potassium:proton antiporter" +BW25113_3351 kefG 0 3473966 3474520 -1 2702 0.22522522522522523 555 125 "potassium-efflux system ancillary protein for KefB and glutathione-regulated" +BW25113_3351__5prime kefG__5prime 0 3474521 3474718 -1 412 0.14646464646464646 198 29 "potassium-efflux system ancillary protein for KefB and glutathione-regulated" +BW25113_3351__3prime kefG__3prime 0 3473768 3473965 -1 488 0.10606060606060606 198 21 "potassium-efflux system ancillary protein for KefB and glutathione-regulated" +BW25113_3352 yheS 0 3474648 3476561 1 4556 0.11964472309299895 1914 229 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_3352__5prime yheS__5prime 0 3474450 3474647 1 777 0.17676767676767677 198 35 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_3352__3prime yheS__3prime 0 3476562 3476759 1 535 0.1717171717171717 198 34 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_3353 yheT 0 3476561 3477583 1 5154 0.21603128054740958 1023 221 "UPF0017 family putative hydrolase" +BW25113_3353__5prime yheT__5prime 0 3476363 3476560 1 1023 0.21212121212121213 198 42 "UPF0017 family putative hydrolase" +BW25113_3353__3prime yheT__3prime 0 3477584 3477781 1 1087 0.21212121212121213 198 42 "UPF0017 family putative hydrolase" +BW25113_3354 yheU 0 3477577 3477795 1 1101 0.1963470319634703 219 43 "UPF0270 family protein" +BW25113_3354__5prime yheU__5prime 0 3477379 3477576 1 864 0.1919191919191919 198 38 "UPF0270 family protein" +BW25113_3354__3prime yheU__3prime 0 3477796 3477993 1 748 0.19696969696969696 198 39 "UPF0270 family protein" +BW25113_3355 prkB 0 3477849 3478718 1 4296 0.17126436781609194 870 149 "putative phosphoribulokinase" +BW25113_3355__5prime prkB__5prime 0 3477651 3477848 1 1073 0.18181818181818182 198 36 "putative phosphoribulokinase" +BW25113_3355__3prime prkB__3prime 0 3478719 3478916 1 793 0.13636363636363635 198 27 "putative phosphoribulokinase" +3478730_3478752 3478730_3478752 0 3478731 3478752 1 186 0.18181818181818182 22 4 "3478730_3478752" +3478730_3478752__5prime 3478730_3478752__5prime 0 3478533 3478730 1 424 0.09090909090909091 198 18 "3478730_3478752" +3478730_3478752__3prime 3478730_3478752__3prime 0 3478753 3478950 1 710 0.14646464646464646 198 29 "3478730_3478752" +BW25113_3356 yhfA 0 3478773 3479177 -1 979 0.12098765432098765 405 49 "OsmC family protein" +BW25113_3356__5prime yhfA__5prime 0 3479178 3479375 -1 984 0.18686868686868688 198 37 "OsmC family protein" +BW25113_3356__3prime yhfA__3prime 0 3478575 3478772 -1 504 0.09090909090909091 198 18 "OsmC family protein" +BW25113_3357 crp 0 3479479 3480111 1 168 0.01579778830963665 633 10 "cAMP-activated global transcription factor and mediator of catabolite repression" +BW25113_3357__5prime crp__5prime 0 3479281 3479478 1 669 0.15151515151515152 198 30 "cAMP-activated global transcription factor and mediator of catabolite repression" +BW25113_3357__3prime crp__3prime 0 3480112 3480309 1 1205 0.21212121212121213 198 42 "cAMP-activated global transcription factor and mediator of catabolite repression" +BW25113_3358 yhfK 0 3480150 3482252 1 11359 0.20874940561103186 2103 439 "putative transporter and FUSC superfamily inner membrane protein and tandem domains" +BW25113_3358__5prime yhfK__5prime 0 3479952 3480149 1 352 0.05555555555555555 198 11 "putative transporter and FUSC superfamily inner membrane protein and tandem domains" +BW25113_3358__3prime yhfK__3prime 0 3482253 3482450 1 859 0.19696969696969696 198 39 "putative transporter and FUSC superfamily inner membrane protein and tandem domains" +3482261_3482317 3482261_3482317 0 3482262 3482317 1 75 0.03571428571428571 56 2 "3482261_3482317" +3482261_3482317__5prime 3482261_3482317__5prime 0 3482064 3482261 1 1052 0.1919191919191919 198 38 "3482261_3482317" +3482261_3482317__3prime 3482261_3482317__3prime 0 3482318 3482515 1 1085 0.21717171717171718 198 43 "3482261_3482317" +BW25113_3359 argD 0 3482319 3483539 -1 6434 0.1891891891891892 1221 231 "bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase" +BW25113_3359__5prime argD__5prime 0 3483540 3483737 -1 503 0.10606060606060606 198 21 "bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase" +BW25113_3359__3prime argD__3prime 0 3482121 3482318 -1 955 0.17676767676767677 198 35 "bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase" +BW25113_3360 pabA 0 3483625 3484188 -1 2292 0.1702127659574468 564 96 "aminodeoxychorismate synthase and subunit II" +BW25113_3360__5prime pabA__5prime 0 3484189 3484386 -1 652 0.20707070707070707 198 41 "aminodeoxychorismate synthase and subunit II" +BW25113_3360__3prime pabA__3prime 0 3483427 3483624 -1 141 0.025252525252525252 198 5 "aminodeoxychorismate synthase and subunit II" +BW25113_3361 fic 0 3484220 3484822 -1 2046 0.1791044776119403 603 108 "stationary-phase adenosine monophosphate-protein transferase domain protein" +BW25113_3361__5prime fic__5prime 0 3484823 3485020 -1 698 0.15656565656565657 198 31 "stationary-phase adenosine monophosphate-protein transferase domain protein" +BW25113_3361__3prime fic__3prime 0 3484022 3484219 -1 808 0.20707070707070707 198 41 "stationary-phase adenosine monophosphate-protein transferase domain protein" +BW25113_3362 yhfG 0 3484812 3484979 -1 665 0.15476190476190477 168 26 "putative Fic-binding protein" +BW25113_3362__5prime yhfG__5prime 0 3484980 3485177 -1 474 0.15151515151515152 198 30 "putative Fic-binding protein" +BW25113_3362__3prime yhfG__3prime 0 3484614 3484811 -1 838 0.21212121212121213 198 42 "putative Fic-binding protein" +BW25113_3363 ppiA 0 3485084 3485656 -1 1953 0.1273996509598604 573 73 "peptidyl-prolyl cis-trans isomerase A (rotamase A)" +BW25113_3363__5prime ppiA__5prime 0 3485657 3485854 -1 426 0.07575757575757576 198 15 "peptidyl-prolyl cis-trans isomerase A (rotamase A)" +BW25113_3363__3prime ppiA__3prime 0 3484886 3485083 -1 213 0.11616161616161616 198 23 "peptidyl-prolyl cis-trans isomerase A (rotamase A)" +BW25113_3364 tsgA 0 3485927 3487108 1 8890 0.23434856175972926 1182 277 "putative transporter" +BW25113_3364__5prime tsgA__5prime 0 3485729 3485926 1 259 0.045454545454545456 198 9 "putative transporter" +BW25113_3364__3prime tsgA__3prime 0 3487109 3487306 1 328 0.050505050505050504 198 10 "putative transporter" +3487116_3487142 3487116_3487142 0 3487117 3487142 1 239 0.2692307692307692 26 7 "3487116_3487142" +3487116_3487142__5prime 3487116_3487142__5prime 0 3486919 3487116 1 1820 0.29292929292929293 198 58 "3487116_3487142" +3487116_3487142__3prime 3487116_3487142__3prime 0 3487143 3487340 1 77 0.020202020202020204 198 4 "3487116_3487142" +BW25113_3365 nirB 0 3487370 3489913 1 8491 0.13797169811320756 2544 351 "nitrite reductase and large subunit and NAD(P)H-binding" +BW25113_3365__5prime nirB__5prime 0 3487172 3487369 1 22 0.015151515151515152 198 3 "nitrite reductase and large subunit and NAD(P)H-binding" +BW25113_3365__3prime nirB__3prime 0 3489914 3490111 1 775 0.13636363636363635 198 27 "nitrite reductase and large subunit and NAD(P)H-binding" +BW25113_3366 nirD 0 3489910 3490236 1 1171 0.1162079510703364 327 38 "nitrite reductase and NAD(P)H-binding and small subunit" +BW25113_3366__5prime nirD__5prime 0 3489712 3489909 1 1163 0.2222222222222222 198 44 "nitrite reductase and NAD(P)H-binding and small subunit" +BW25113_3366__3prime nirD__3prime 0 3490237 3490434 1 642 0.10606060606060606 198 21 "nitrite reductase and NAD(P)H-binding and small subunit" +BW25113_3367 nirC 0 3490362 3491168 1 5170 0.22676579925650558 807 183 "nitrite transporter" +BW25113_3367__5prime nirC__5prime 0 3490164 3490361 1 772 0.1111111111111111 198 22 "nitrite transporter" +BW25113_3367__3prime nirC__3prime 0 3491169 3491366 1 1406 0.30808080808080807 198 61 "nitrite transporter" +BW25113_3368 cysG 0 3491187 3492560 1 12868 0.3034934497816594 1374 417 "fused siroheme synthase 1 and 3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase" +BW25113_3368__5prime cysG__5prime 0 3490989 3491186 1 1608 0.25252525252525254 198 50 "fused siroheme synthase 1 and 3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase" +BW25113_3368__3prime cysG__3prime 0 3492561 3492758 1 319 0.10101010101010101 198 20 "fused siroheme synthase 1 and 3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase" +BW25113_3369 yhfL 0 3492807 3492974 1 4250 0.4166666666666667 168 70 "small lipoprotein" +BW25113_3369__5prime yhfL__5prime 0 3492609 3492806 1 275 0.09090909090909091 198 18 "small lipoprotein" +BW25113_3369__3prime yhfL__3prime 0 3492975 3493172 1 259 0.05555555555555555 198 11 "small lipoprotein" +BW25113_3370 frlA 0 3493269 3494606 1 5771 0.187593423019432 1338 251 "putative fructoselysine transporter" +BW25113_3370__5prime frlA__5prime 0 3493071 3493268 1 265 0.0707070707070707 198 14 "putative fructoselysine transporter" +BW25113_3370__3prime frlA__3prime 0 3494607 3494804 1 503 0.12626262626262627 198 25 "putative fructoselysine transporter" +BW25113_3371 frlB 0 3494627 3495649 1 2898 0.12316715542521994 1023 126 "fructoselysine-6-P-deglycase" +BW25113_3371__5prime frlB__5prime 0 3494429 3494626 1 863 0.18181818181818182 198 36 "fructoselysine-6-P-deglycase" +BW25113_3371__3prime frlB__3prime 0 3495650 3495847 1 417 0.07575757575757576 198 15 "fructoselysine-6-P-deglycase" +BW25113_4474 frlC 0 3495699 3496529 1 2107 0.11913357400722022 831 99 "fructoselysine 3-epimerase" +BW25113_4474__5prime frlC__5prime 0 3495501 3495698 1 1055 0.1919191919191919 198 38 "fructoselysine 3-epimerase" +BW25113_4474__3prime frlC__3prime 0 3496530 3496727 1 906 0.12626262626262627 198 25 "fructoselysine 3-epimerase" +BW25113_3374 frlD 0 3496526 3497311 1 3935 0.15012722646310434 786 118 "fructoselysine 6-kinase" +BW25113_3374__5prime frlD__5prime 0 3496328 3496525 1 444 0.13131313131313133 198 26 "fructoselysine 6-kinase" +BW25113_3374__3prime frlD__3prime 0 3497312 3497509 1 1233 0.19696969696969696 198 39 "fructoselysine 6-kinase" +BW25113_3375 frlR 0 3497411 3498142 1 2542 0.12021857923497267 732 88 "putative DNA-binding transcriptional regulator" +BW25113_3375__5prime frlR__5prime 0 3497213 3497410 1 1471 0.20707070707070707 198 41 "putative DNA-binding transcriptional regulator" +BW25113_3375__3prime frlR__3prime 0 3498143 3498340 1 1376 0.23232323232323232 198 46 "putative DNA-binding transcriptional regulator" +3498144_3498180 3498144_3498180 0 3498145 3498180 1 75 0.19444444444444445 36 7 "3498144_3498180" +3498144_3498180__5prime 3498144_3498180__5prime 0 3497947 3498144 1 183 0.04040404040404041 198 8 "3498144_3498180" +3498144_3498180__3prime 3498144_3498180__3prime 0 3498181 3498378 1 1353 0.20707070707070707 198 41 "3498144_3498180" +BW25113_3376 yhfS 0 3498294 3499379 -1 4157 0.1445672191528545 1086 157 "FNR-regulated pyridoxal phosphate-dependent aminotransferase family protein" +BW25113_3376__5prime yhfS__5prime 0 3499380 3499577 -1 975 0.21212121212121213 198 42 "FNR-regulated pyridoxal phosphate-dependent aminotransferase family protein" +BW25113_3376__3prime yhfS__3prime 0 3498096 3498293 -1 1136 0.20202020202020202 198 40 "FNR-regulated pyridoxal phosphate-dependent aminotransferase family protein" +BW25113_3377 yhfT 0 3499391 3500695 -1 3834 0.13486590038314175 1305 176 "inner membrane protein" +BW25113_3377__5prime yhfT__5prime 0 3500696 3500893 -1 357 0.08585858585858586 198 17 "inner membrane protein" +BW25113_3377__3prime yhfT__3prime 0 3499193 3499390 -1 666 0.12626262626262627 198 25 "inner membrane protein" +BW25113_3378 yhfU 0 3500707 3501060 -1 1218 0.12994350282485875 354 46 "DUF2620 family protein" +BW25113_3378__5prime yhfU__5prime 0 3501061 3501258 -1 357 0.11616161616161616 198 23 "DUF2620 family protein" +BW25113_3378__3prime yhfU__3prime 0 3500509 3500706 -1 203 0.10606060606060606 198 21 "DUF2620 family protein" +BW25113_3379 php 0 3501071 3501949 -1 2644 0.14562002275312855 879 128 "phosphotriesterase homology protein" +BW25113_3379__5prime php__5prime 0 3501950 3502147 -1 583 0.1717171717171717 198 34 "phosphotriesterase homology protein" +BW25113_3379__3prime php__3prime 0 3500873 3501070 -1 888 0.16161616161616163 198 32 "phosphotriesterase homology protein" +BW25113_3380 yhfW 0 3501946 3503172 -1 3609 0.13691931540342298 1227 168 "phosphopentomutase-related metalloenzyme superfamily protein" +BW25113_3380__5prime yhfW__5prime 0 3503173 3503370 -1 826 0.14646464646464646 198 29 "phosphopentomutase-related metalloenzyme superfamily protein" +BW25113_3380__3prime yhfW__3prime 0 3501748 3501945 -1 1258 0.23232323232323232 198 46 "phosphopentomutase-related metalloenzyme superfamily protein" +BW25113_3381 yhfX 0 3503172 3504335 -1 3977 0.16323024054982818 1164 190 '"putative pyridoxal 5''-phosphate binding protein"' +BW25113_3381__5prime yhfX__5prime 0 3504336 3504533 -1 227 0.05555555555555555 198 11 '"putative pyridoxal 5''-phosphate binding protein"' +BW25113_3381__3prime yhfX__3prime 0 3502974 3503171 -1 536 0.14646464646464646 198 29 '"putative pyridoxal 5''-phosphate binding protein"' +BW25113_3382 yhfY 0 3504419 3504781 -1 1277 0.12121212121212122 363 44 "PRD domain protein" +BW25113_3382__5prime yhfY__5prime 0 3504782 3504979 -1 872 0.1414141414141414 198 28 "PRD domain protein" +BW25113_3382__3prime yhfY__3prime 0 3504221 3504418 -1 279 0.07575757575757576 198 15 "PRD domain protein" +BW25113_3383 yhfZ 0 3504798 3505703 -1 3219 0.1357615894039735 906 123 "putative DNA-binding transcriptional regulator" +BW25113_3383__5prime yhfZ__5prime 0 3505704 3505901 -1 269 0.05555555555555555 198 11 "putative DNA-binding transcriptional regulator" +BW25113_3383__3prime yhfZ__3prime 0 3504600 3504797 -1 1096 0.16666666666666666 198 33 "putative DNA-binding transcriptional regulator" +3505869_3505959 3505869_3505959 0 3505870 3505959 1 164 0.1 90 9 "3505869_3505959" +3505869_3505959__5prime 3505869_3505959__5prime 0 3505672 3505869 1 197 0.025252525252525252 198 5 "3505869_3505959" +3505869_3505959__3prime 3505869_3505959__3prime 0 3505960 3506157 1 55 0.010101010101010102 198 2 "3505869_3505959" +BW25113_3384 trpS 0 3505993 3506997 -1 44 0.0009950248756218905 1005 1 "tryptophanyl-tRNA synthetase" +BW25113_3384__5prime trpS__5prime 0 3506998 3507195 -1 585 0.10101010101010101 198 20 "tryptophanyl-tRNA synthetase" +BW25113_3384__3prime trpS__3prime 0 3505795 3505992 -1 366 0.0707070707070707 198 14 "tryptophanyl-tRNA synthetase" +BW25113_3385 gph 0 3506990 3507748 -1 3434 0.19104084321475626 759 145 "phosphoglycolate phosphatase" +BW25113_3385__5prime gph__5prime 0 3507749 3507946 -1 281 0.025252525252525252 198 5 "phosphoglycolate phosphatase" +BW25113_3385__3prime gph__3prime 0 3506792 3506989 -1 0 0.0 198 0 "phosphoglycolate phosphatase" +BW25113_3386 rpe 0 3507741 3508418 -1 641 0.04277286135693215 678 29 "D-ribulose-5-phosphate 3-epimerase" +BW25113_3386__5prime rpe__5prime 0 3508419 3508616 -1 860 0.1919191919191919 198 38 "D-ribulose-5-phosphate 3-epimerase" +BW25113_3386__3prime rpe__3prime 0 3507543 3507740 -1 1137 0.2777777777777778 198 55 "D-ribulose-5-phosphate 3-epimerase" +BW25113_3387 dam 0 3508436 3509272 -1 3484 0.17562724014336917 837 147 "DNA adenine methyltransferase" +BW25113_3387__5prime dam__5prime 0 3509273 3509470 -1 1060 0.23232323232323232 198 46 "DNA adenine methyltransferase" +BW25113_3387__3prime dam__3prime 0 3508238 3508435 -1 110 0.045454545454545456 198 9 "DNA adenine methyltransferase" +BW25113_3388 damX 0 3509379 3510665 -1 5491 0.1585081585081585 1287 204 "cell division protein that binds to the septal ring" +BW25113_3388__5prime damX__5prime 0 3510666 3510863 -1 701 0.15656565656565657 198 31 "cell division protein that binds to the septal ring" +BW25113_3388__3prime damX__3prime 0 3509181 3509378 -1 861 0.25252525252525254 198 50 "cell division protein that binds to the septal ring" +BW25113_3389 aroB 0 3510757 3511845 -1 3799 0.15794306703397612 1089 172 "3-dehydroquinate synthase" +BW25113_3389__5prime aroB__5prime 0 3511846 3512043 -1 340 0.10101010101010101 198 20 "3-dehydroquinate synthase" +BW25113_3389__3prime aroB__3prime 0 3510559 3510756 -1 543 0.12626262626262627 198 25 "3-dehydroquinate synthase" +BW25113_3390 aroK 0 3511902 3512423 -1 348 0.05555555555555555 522 29 "shikimate kinase I" +BW25113_3390__5prime aroK__5prime 0 3512424 3512621 -1 186 0.07575757575757576 198 15 "shikimate kinase I" +BW25113_3390__3prime aroK__3prime 0 3511704 3511901 -1 442 0.1111111111111111 198 22 "shikimate kinase I" +BW25113_3391 hofQ 0 3512824 3514062 -1 5501 0.14527845036319612 1239 180 "DNA catabolic putative fimbrial transporter" +BW25113_3391__5prime hofQ__5prime 0 3514063 3514260 -1 758 0.14646464646464646 198 29 "DNA catabolic putative fimbrial transporter" +BW25113_3391__3prime hofQ__3prime 0 3512626 3512823 -1 563 0.11616161616161616 198 23 "DNA catabolic putative fimbrial transporter" +BW25113_3392 hofP 0 3513974 3514378 -1 1600 0.14320987654320988 405 58 "DNA catabolic protein" +BW25113_3392__5prime hofP__5prime 0 3514379 3514576 -1 793 0.18686868686868688 198 37 "DNA catabolic protein" +BW25113_3392__3prime hofP__3prime 0 3513776 3513973 -1 817 0.15151515151515152 198 30 "DNA catabolic protein" +BW25113_3393 hofO 0 3514368 3514808 -1 1534 0.17687074829931973 441 78 "DNA catabolic protein" +BW25113_3393__5prime hofO__5prime 0 3514809 3515006 -1 579 0.12626262626262627 198 25 "DNA catabolic protein" +BW25113_3393__3prime hofO__3prime 0 3514170 3514367 -1 861 0.14646464646464646 198 29 "DNA catabolic protein" +BW25113_3394 hofN 0 3514792 3515331 -1 1519 0.11481481481481481 540 62 "DNA catabolic putative fimbrial assembly protein" +BW25113_3394__5prime hofN__5prime 0 3515332 3515529 -1 396 0.09595959595959595 198 19 "DNA catabolic putative fimbrial assembly protein" +BW25113_3394__3prime hofN__3prime 0 3514594 3514791 -1 679 0.1919191919191919 198 38 "DNA catabolic putative fimbrial assembly protein" +BW25113_3395 hofM 0 3515331 3516110 -1 2344 0.16923076923076924 780 132 "DNA catabolic putative pilus assembly protein" +BW25113_3395__5prime hofM__5prime 0 3516111 3516308 -1 573 0.15151515151515152 198 30 "DNA catabolic putative pilus assembly protein" +BW25113_3395__3prime hofM__3prime 0 3515133 3515330 -1 663 0.12626262626262627 198 25 "DNA catabolic putative pilus assembly protein" +BW25113_3396 mrcA 0 3516230 3518782 1 11240 0.17508813160987075 2553 447 "fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase" +BW25113_3396__5prime mrcA__5prime 0 3516032 3516229 1 352 0.09090909090909091 198 18 "fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase" +BW25113_3396__3prime mrcA__3prime 0 3518783 3518980 1 797 0.13131313131313133 198 26 "fused penicillin-binding protein 1a: murein transglycosylase/murein transpeptidase" +3518836_3518934 3518836_3518934 0 3518837 3518934 1 169 0.11224489795918367 98 11 "3518836_3518934" +3518836_3518934__5prime 3518836_3518934__5prime 0 3518639 3518836 1 435 0.15151515151515152 198 30 "3518836_3518934" +3518836_3518934__3prime 3518836_3518934__3prime 0 3518935 3519132 1 1486 0.24242424242424243 198 48 "3518836_3518934" +BW25113_3397 nudE 0 3518948 3519508 -1 2759 0.15508021390374332 561 87 "adenosine nucleotide hydrolase; substrates include Ap3A and Ap2A and ADP-ribose and NADH" +BW25113_3397__5prime nudE__5prime 0 3519509 3519706 -1 291 0.06565656565656566 198 13 "adenosine nucleotide hydrolase; substrates include Ap3A and Ap2A and ADP-ribose and NADH" +BW25113_3397__3prime nudE__3prime 0 3518750 3518947 -1 386 0.15151515151515152 198 30 "adenosine nucleotide hydrolase; substrates include Ap3A and Ap2A and ADP-ribose and NADH" +BW25113_3398 yrfF 0 3519828 3521963 1 236 0.00749063670411985 2136 16 "inner membrane protein" +BW25113_3398__5prime yrfF__5prime 0 3519630 3519827 1 610 0.16666666666666666 198 33 "inner membrane protein" +BW25113_3398__3prime yrfF__3prime 0 3521964 3522161 1 594 0.16161616161616163 198 32 "inner membrane protein" +BW25113_3399 yrfG 0 3522028 3522696 1 2700 0.19282511210762332 669 129 "GMP/IMP nucleotidase" +BW25113_3399__5prime yrfG__5prime 0 3521830 3522027 1 454 0.1414141414141414 198 28 "GMP/IMP nucleotidase" +BW25113_3399__3prime yrfG__3prime 0 3522697 3522894 1 611 0.1919191919191919 198 38 "GMP/IMP nucleotidase" +BW25113_3400 hslR 0 3522707 3523108 1 1092 0.14427860696517414 402 58 "ribosome-associated heat shock protein Hsp15" +BW25113_3400__5prime hslR__5prime 0 3522509 3522706 1 704 0.14646464646464646 198 29 "ribosome-associated heat shock protein Hsp15" +BW25113_3400__3prime hslR__3prime 0 3523109 3523306 1 445 0.12121212121212122 198 24 "ribosome-associated heat shock protein Hsp15" +BW25113_3401 hslO 0 3523133 3524011 1 3305 0.15244596131968147 879 134 "heat shock protein Hsp33" +BW25113_3401__5prime hslO__5prime 0 3522935 3523132 1 350 0.08585858585858586 198 17 "heat shock protein Hsp33" +BW25113_3401__3prime hslO__3prime 0 3524012 3524209 1 559 0.1414141414141414 198 28 "heat shock protein Hsp33" +BW25113_3402 yhgE 0 3524074 3525798 -1 6677 0.16869565217391305 1725 291 "DUF4153 family putative inner membrane protein" +BW25113_3402__5prime yhgE__5prime 0 3525799 3525996 -1 106 0.050505050505050504 198 10 "DUF4153 family putative inner membrane protein" +BW25113_3402__3prime yhgE__3prime 0 3523876 3524073 -1 456 0.10101010101010101 198 20 "DUF4153 family putative inner membrane protein" +BW25113_3403 pck 0 3526177 3527799 1 6448 0.16081330868761554 1623 261 "phosphoenolpyruvate carboxykinase" +BW25113_3403__5prime pck__5prime 0 3525979 3526176 1 155 0.06565656565656566 198 13 "phosphoenolpyruvate carboxykinase" +BW25113_3403__3prime pck__3prime 0 3527800 3527997 1 423 0.12121212121212122 198 24 "phosphoenolpyruvate carboxykinase" +BW25113_3404 envZ 0 3527875 3529227 -1 5261 0.17590539541759054 1353 238 "sensory histidine kinase in two-component regulatory system with OmpR" +BW25113_3404__5prime envZ__5prime 0 3529228 3529425 -1 690 0.19696969696969696 198 39 "sensory histidine kinase in two-component regulatory system with OmpR" +BW25113_3404__3prime envZ__3prime 0 3527677 3527874 -1 502 0.1717171717171717 198 34 "sensory histidine kinase in two-component regulatory system with OmpR" +BW25113_3405 ompR 0 3529224 3529943 -1 2121 0.13194444444444445 720 95 "response regulator in two-component regulatory system with EnvZ" +BW25113_3405__5prime ompR__5prime 0 3529944 3530141 -1 370 0.08585858585858586 198 17 "response regulator in two-component regulatory system with EnvZ" +BW25113_3405__3prime ompR__3prime 0 3529026 3529223 -1 1186 0.15151515151515152 198 30 "response regulator in two-component regulatory system with EnvZ" +BW25113_3406 greB 0 3530171 3530647 1 988 0.10272536687631027 477 49 "transcript cleavage factor" +BW25113_3406__5prime greB__5prime 0 3529973 3530170 1 353 0.07575757575757576 198 15 "transcript cleavage factor" +BW25113_3406__3prime greB__3prime 0 3530648 3530845 1 1108 0.15151515151515152 198 30 "transcript cleavage factor" +BW25113_3407 yhgF 0 3530744 3533065 1 11035 0.17226528854435832 2322 400 "putative transcriptional accessory protein" +BW25113_3407__5prime yhgF__5prime 0 3530546 3530743 1 986 0.19696969696969696 198 39 "putative transcriptional accessory protein" +BW25113_3407__3prime yhgF__3prime 0 3533066 3533263 1 1248 0.21717171717171718 198 43 "putative transcriptional accessory protein" +3533104_3533138 3533104_3533138 0 3533105 3533138 1 536 0.4411764705882353 34 15 "3533104_3533138" +3533104_3533138__5prime 3533104_3533138__5prime 0 3532907 3533104 1 672 0.12626262626262627 198 25 "3533104_3533138" +3533104_3533138__3prime 3533104_3533138__3prime 0 3533139 3533336 1 780 0.18686868686868688 198 37 "3533104_3533138" +BW25113_3408 feoA 0 3533522 3533749 1 1141 0.18859649122807018 228 43 "ferrous iron transporter and protein A" +BW25113_3408__5prime feoA__5prime 0 3533324 3533521 1 776 0.13636363636363635 198 27 "ferrous iron transporter and protein A" +BW25113_3408__3prime feoA__3prime 0 3533750 3533947 1 1551 0.22727272727272727 198 45 "ferrous iron transporter and protein A" +BW25113_3409 feoB 0 3533766 3536087 1 11376 0.1830318690783807 2322 425 "fused ferrous iron transporter and protein B: GTP-binding protein/membrane protein" +BW25113_3409__5prime feoB__5prime 0 3533568 3533765 1 948 0.18181818181818182 198 36 "fused ferrous iron transporter and protein B: GTP-binding protein/membrane protein" +BW25113_3409__3prime feoB__3prime 0 3536088 3536285 1 1060 0.18686868686868688 198 37 "fused ferrous iron transporter and protein B: GTP-binding protein/membrane protein" +BW25113_3410 feoC 0 3536087 3536323 1 1292 0.2109704641350211 237 50 "putative DNA-binding transcriptional regulator" +BW25113_3410__5prime feoC__5prime 0 3535889 3536086 1 433 0.1717171717171717 198 34 "putative DNA-binding transcriptional regulator" +BW25113_3410__3prime feoC__3prime 0 3536324 3536521 1 773 0.10606060606060606 198 21 "putative DNA-binding transcriptional regulator" +BW25113_3411 yhgA 0 3536526 3537404 1 2966 0.14562002275312855 879 128 "transposase_31 family protein" +BW25113_3411__5prime yhgA__5prime 0 3536328 3536525 1 549 0.09090909090909091 198 18 "transposase_31 family protein" +BW25113_3411__3prime yhgA__3prime 0 3537405 3537602 1 1124 0.15151515151515152 198 30 "transposase_31 family protein" +BW25113_3412 bioH 0 3537433 3538203 -1 2768 0.14007782101167315 771 108 "pimeloyl-ACP methyl ester carboxylesterase" +BW25113_3412__5prime bioH__5prime 0 3538204 3538401 -1 888 0.19696969696969696 198 39 "pimeloyl-ACP methyl ester carboxylesterase" +BW25113_3412__3prime bioH__3prime 0 3537235 3537432 -1 667 0.12121212121212122 198 24 "pimeloyl-ACP methyl ester carboxylesterase" +BW25113_3413 gntX 0 3538241 3538924 1 1925 0.14035087719298245 684 96 "DNA catabolic protein" +BW25113_3413__5prime gntX__5prime 0 3538043 3538240 1 1246 0.20202020202020202 198 40 "DNA catabolic protein" +BW25113_3413__3prime gntX__3prime 0 3538925 3539122 1 230 0.08585858585858586 198 17 "DNA catabolic protein" +BW25113_3414 nfuA 0 3538983 3539558 1 1453 0.13020833333333334 576 75 "Fe/S biogenesis protein; putative scaffold/chaperone for damaged Fe/S proteins" +BW25113_3414__5prime nfuA__5prime 0 3538785 3538982 1 733 0.12121212121212122 198 24 "Fe/S biogenesis protein; putative scaffold/chaperone for damaged Fe/S proteins" +BW25113_3414__3prime nfuA__3prime 0 3539559 3539756 1 707 0.13131313131313133 198 26 "Fe/S biogenesis protein; putative scaffold/chaperone for damaged Fe/S proteins" +3539580_3539616 3539580_3539616 0 3539581 3539616 1 65 0.1111111111111111 36 4 "3539580_3539616" +3539580_3539616__5prime 3539580_3539616__5prime 0 3539383 3539580 1 824 0.1717171717171717 198 34 "3539580_3539616" +3539580_3539616__3prime 3539580_3539616__3prime 0 3539617 3539814 1 575 0.08080808080808081 198 16 "3539580_3539616" +BW25113_3415 gntT 0 3539918 3541234 1 6410 0.17995444191343962 1317 237 "gluconate transporter and high-affinity GNT I system" +BW25113_3415__5prime gntT__5prime 0 3539720 3539917 1 110 0.025252525252525252 198 5 "gluconate transporter and high-affinity GNT I system" +BW25113_3415__3prime gntT__3prime 0 3541235 3541432 1 1365 0.15656565656565657 198 31 "gluconate transporter and high-affinity GNT I system" +3541245_3541332 3541245_3541332 0 3541246 3541332 1 330 0.09195402298850575 87 8 "3541245_3541332" +3541245_3541332__5prime 3541245_3541332__5prime 0 3541048 3541245 1 771 0.13636363636363635 198 27 "3541245_3541332" +3541245_3541332__3prime 3541245_3541332__3prime 0 3541333 3541530 1 1103 0.15656565656565657 198 31 "3541245_3541332" +BW25113_3416 malQ 0 3541345 3543429 -1 8509 0.1553956834532374 2085 324 "4-alpha-glucanotransferase (amylomaltase)" +BW25113_3416__5prime malQ__5prime 0 3543430 3543627 -1 755 0.1414141414141414 198 28 "4-alpha-glucanotransferase (amylomaltase)" +BW25113_3416__3prime malQ__3prime 0 3541147 3541344 -1 969 0.13636363636363635 198 27 "4-alpha-glucanotransferase (amylomaltase)" +BW25113_3417 malP 0 3543439 3545832 -1 7802 0.13659147869674185 2394 327 "maltodextrin phosphorylase" +BW25113_3417__5prime malP__5prime 0 3545833 3546030 -1 894 0.1919191919191919 198 38 "maltodextrin phosphorylase" +BW25113_3417__3prime malP__3prime 0 3543241 3543438 -1 919 0.16161616161616163 198 32 "maltodextrin phosphorylase" +BW25113_3418 malT 0 3546444 3549149 1 8396 0.13636363636363635 2706 369 "mal regulon transcriptional activator" +BW25113_3418__5prime malT__5prime 0 3546246 3546443 1 556 0.13636363636363635 198 27 "mal regulon transcriptional activator" +BW25113_3418__3prime malT__3prime 0 3549150 3549347 1 792 0.18686868686868688 198 37 "mal regulon transcriptional activator" +3549154_3549178 3549154_3549178 0 3549155 3549178 1 57 0.125 24 3 "3549154_3549178" +3549154_3549178__5prime 3549154_3549178__5prime 0 3548957 3549154 1 723 0.20202020202020202 198 40 "3549154_3549178" +3549154_3549178__3prime 3549154_3549178__3prime 0 3549179 3549376 1 839 0.1919191919191919 198 38 "3549154_3549178" +BW25113_4475 rtcA 0 3549192 3550208 -1 3633 0.14945919370698132 1017 152 '"RNA 3''-terminal phosphate cyclase"' +BW25113_4475__5prime rtcA__5prime 0 3550209 3550406 -1 776 0.16161616161616163 198 32 '"RNA 3''-terminal phosphate cyclase"' +BW25113_4475__3prime rtcA__3prime 0 3548994 3549191 -1 416 0.12626262626262627 198 25 '"RNA 3''-terminal phosphate cyclase"' +BW25113_3421 rtcB 0 3550212 3551438 -1 5382 0.18418907905460472 1227 226 "RNA-splicing ligase" +BW25113_3421__5prime rtcB__5prime 0 3551439 3551636 -1 231 0.06565656565656566 198 13 "RNA-splicing ligase" +BW25113_3421__3prime rtcB__3prime 0 3550014 3550211 -1 408 0.10101010101010101 198 20 "RNA-splicing ligase" +BW25113_3422 rtcR 0 3551627 3553225 1 5828 0.1357098186366479 1599 217 "sigma 54-dependent transcriptional regulator of rtcBA expression" +BW25113_3422__5prime rtcR__5prime 0 3551429 3551626 1 124 0.045454545454545456 198 9 "sigma 54-dependent transcriptional regulator of rtcBA expression" +BW25113_3422__3prime rtcR__3prime 0 3553226 3553423 1 608 0.17676767676767677 198 35 "sigma 54-dependent transcriptional regulator of rtcBA expression" +BW25113_3423 glpR 0 3553207 3553965 -1 2334 0.15678524374176547 759 119 "GlpR DNA-binding transcriptional repressor" +BW25113_3423__5prime glpR__5prime 0 3553966 3554163 -1 404 0.10606060606060606 198 21 "GlpR DNA-binding transcriptional repressor" +BW25113_3423__3prime glpR__3prime 0 3553009 3553206 -1 745 0.16666666666666666 198 33 "GlpR DNA-binding transcriptional repressor" +BW25113_3424 glpG 0 3553982 3554812 -1 3154 0.14320096269554752 831 119 "rhomboid intramembrane serine protease" +BW25113_3424__5prime glpG__5prime 0 3554813 3555010 -1 895 0.17676767676767677 198 35 "rhomboid intramembrane serine protease" +BW25113_3424__3prime glpG__3prime 0 3553784 3553981 -1 720 0.1919191919191919 198 38 "rhomboid intramembrane serine protease" +BW25113_3425 glpE 0 3554857 3555183 -1 1012 0.16819571865443425 327 55 "thiosulfate:cyanide sulfurtransferase (rhodanese)" +BW25113_3425__5prime glpE__5prime 0 3555184 3555381 -1 355 0.045454545454545456 198 9 "thiosulfate:cyanide sulfurtransferase (rhodanese)" +BW25113_3425__3prime glpE__3prime 0 3554659 3554856 -1 1234 0.12626262626262627 198 25 "thiosulfate:cyanide sulfurtransferase (rhodanese)" +BW25113_3426 glpD 0 3555373 3556878 1 2996 0.09628154050464807 1506 145 "sn-glycerol-3-phosphate dehydrogenase and aerobic and FAD/NAD(P)-binding" +BW25113_3426__5prime glpD__5prime 0 3555175 3555372 1 376 0.05555555555555555 198 11 "sn-glycerol-3-phosphate dehydrogenase and aerobic and FAD/NAD(P)-binding" +BW25113_3426__3prime glpD__3prime 0 3556879 3557076 1 704 0.17676767676767677 198 35 "sn-glycerol-3-phosphate dehydrogenase and aerobic and FAD/NAD(P)-binding" +3556941_3557039 3556941_3557039 0 3556942 3557039 1 448 0.22448979591836735 98 22 "3556941_3557039" +3556941_3557039__5prime 3556941_3557039__5prime 0 3556744 3556941 1 882 0.1919191919191919 198 38 "3556941_3557039" +3556941_3557039__3prime 3556941_3557039__3prime 0 3557040 3557237 1 427 0.08080808080808081 198 16 "3556941_3557039" +BW25113_3427 yzgL 0 3557147 3557365 -1 244 0.0821917808219178 219 18 "3557146_3557365" +BW25113_3427__5prime yzgL__5prime 0 3557366 3557563 -1 1010 0.22727272727272727 198 45 "3557146_3557365" +BW25113_3427__3prime yzgL__3prime 0 3556949 3557146 -1 796 0.16666666666666666 198 33 "3557146_3557365" +BW25113_3428 glgP 0 3557494 3559941 -1 8193 0.15522875816993464 2448 380 "glycogen phosphorylase" +BW25113_3428__5prime glgP__5prime 0 3559942 3560139 -1 1373 0.23737373737373738 198 47 "glycogen phosphorylase" +BW25113_3428__3prime glgP__3prime 0 3557296 3557493 -1 572 0.1717171717171717 198 34 "glycogen phosphorylase" +BW25113_3429 glgA 0 3559960 3561393 -1 6975 0.17154811715481172 1434 246 "glycogen synthase" +BW25113_3429__5prime glgA__5prime 0 3561394 3561591 -1 640 0.12626262626262627 198 25 "glycogen synthase" +BW25113_3429__3prime glgA__3prime 0 3559762 3559959 -1 357 0.09595959595959595 198 19 "glycogen synthase" +BW25113_3430 glgC 0 3561393 3562688 -1 5943 0.1419753086419753 1296 184 "glucose-1-phosphate adenylyltransferase" +BW25113_3430__5prime glgC__5prime 0 3562689 3562886 -1 1236 0.14646464646464646 198 29 "glucose-1-phosphate adenylyltransferase" +BW25113_3430__3prime glgC__3prime 0 3561195 3561392 -1 841 0.1717171717171717 198 34 "glucose-1-phosphate adenylyltransferase" +BW25113_3431 glgX 0 3562706 3564679 -1 9078 0.16818642350557245 1974 332 "glycogen debranching enzyme" +BW25113_3431__5prime glgX__5prime 0 3564680 3564877 -1 830 0.16161616161616163 198 32 "glycogen debranching enzyme" +BW25113_3431__3prime glgX__3prime 0 3562508 3562705 -1 809 0.13131313131313133 198 26 "glycogen debranching enzyme" +BW25113_3432 glgB 0 3564676 3566862 -1 7626 0.1440329218106996 2187 315 "1 and 4-alpha-glucan branching enzyme" +BW25113_3432__5prime glgB__5prime 0 3566863 3567060 -1 1437 0.26262626262626265 198 52 "1 and 4-alpha-glucan branching enzyme" +BW25113_3432__3prime glgB__3prime 0 3564478 3564675 -1 1408 0.2474747474747475 198 49 "1 and 4-alpha-glucan branching enzyme" +BW25113_3433 asd 0 3567135 3568238 -1 6 0.0009057971014492754 1104 1 "aspartate-semialdehyde dehydrogenase and NAD(P)-binding" +BW25113_3433__5prime asd__5prime 0 3568239 3568436 -1 796 0.13131313131313133 198 26 "aspartate-semialdehyde dehydrogenase and NAD(P)-binding" +BW25113_3433__3prime asd__3prime 0 3566937 3567134 -1 1635 0.29292929292929293 198 58 "aspartate-semialdehyde dehydrogenase and NAD(P)-binding" +BW25113_3434 yhgN 0 3568431 3569024 1 1406 0.14814814814814814 594 88 "UPF0056 family inner membrane protein" +BW25113_3434__5prime yhgN__5prime 0 3568233 3568430 1 796 0.13131313131313133 198 26 "UPF0056 family inner membrane protein" +BW25113_3434__3prime yhgN__3prime 0 3569025 3569222 1 202 0.06565656565656566 198 13 "UPF0056 family inner membrane protein" +BW25113_4476 gntU 0 3569081 3570421 -1 3127 0.12229679343773303 1341 164 "gluconate transporter and low affinity GNT 1 system" +BW25113_4476__5prime gntU__5prime 0 3570422 3570619 -1 120 0.05555555555555555 198 11 "gluconate transporter and low affinity GNT 1 system" +BW25113_4476__3prime gntU__3prime 0 3568883 3569080 -1 525 0.18181818181818182 198 36 "gluconate transporter and low affinity GNT 1 system" +BW25113_3437 gntK 0 3570425 3570952 -1 490 0.06439393939393939 528 34 "gluconate kinase 2" +BW25113_3437__5prime gntK__5prime 0 3570953 3571150 -1 330 0.10606060606060606 198 21 "gluconate kinase 2" +BW25113_3437__3prime gntK__3prime 0 3570227 3570424 -1 278 0.11616161616161616 198 23 "gluconate kinase 2" +BW25113_3438 gntR 0 3571091 3572086 -1 3494 0.15963855421686746 996 159 "d-gluconate inducible gluconate regulon transcriptional repressor" +BW25113_3438__5prime gntR__5prime 0 3572087 3572284 -1 316 0.10101010101010101 198 20 "d-gluconate inducible gluconate regulon transcriptional repressor" +BW25113_3438__3prime gntR__3prime 0 3570893 3571090 -1 222 0.08080808080808081 198 16 "d-gluconate inducible gluconate regulon transcriptional repressor" +BW25113_3439 yhhW 0 3572310 3573005 -1 4158 0.2442528735632184 696 170 "quercetinase activity in vitro" +BW25113_3439__5prime yhhW__5prime 0 3573006 3573203 -1 1102 0.15151515151515152 198 30 "quercetinase activity in vitro" +BW25113_3439__3prime yhhW__3prime 0 3572112 3572309 -1 422 0.13131313131313133 198 26 "quercetinase activity in vitro" +BW25113_3440 yhhX 0 3573128 3574165 -1 2753 0.12042389210019268 1038 125 "putative oxidoreductase" +BW25113_3440__5prime yhhX__5prime 0 3574166 3574363 -1 650 0.13636363636363635 198 27 "putative oxidoreductase" +BW25113_3440__3prime yhhX__3prime 0 3572930 3573127 -1 883 0.12626262626262627 198 25 "putative oxidoreductase" +BW25113_4451 ryhB 0 3574287 3574376 -1 102 0.07777777777777778 90 7 "sRNA antisense regulator mediating positive Fur regulon response and Hfq-dependent; global iron regulator" +BW25113_4451__5prime ryhB__5prime 0 3574377 3574574 -1 120 0.06565656565656566 198 13 "sRNA antisense regulator mediating positive Fur regulon response and Hfq-dependent; global iron regulator" +BW25113_4451__3prime ryhB__3prime 0 3574089 3574286 -1 833 0.1717171717171717 198 34 "sRNA antisense regulator mediating positive Fur regulon response and Hfq-dependent; global iron regulator" +BW25113_3441 yhhY 0 3574498 3574986 1 7950 0.3312883435582822 489 162 "putative acetyltransferase" +BW25113_3441__5prime yhhY__5prime 0 3574300 3574497 1 163 0.0707070707070707 198 14 "putative acetyltransferase" +BW25113_3441__3prime yhhY__3prime 0 3574987 3575184 1 317 0.06565656565656566 198 13 "putative acetyltransferase" +BW25113_3442 yhhZ 0 3575223 3576401 1 8424 0.2171331636980492 1179 256 "putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity" +BW25113_3442__5prime yhhZ__5prime 0 3575025 3575222 1 210 0.07575757575757576 198 15 "putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity" +BW25113_3442__3prime yhhZ__3prime 0 3576402 3576599 1 162 0.08585858585858586 198 17 "putative Hcp1 family polymorphic toxin protein; putative colicin-like DNase/tRNase activity" +BW25113_3443 yrhA 0 3576398 3577669 1 3708 0.21069182389937108 1272 268 "3576397_3577669" +BW25113_3443__5prime yrhA__5prime 0 3576200 3576397 1 932 0.13131313131313133 198 26 "3576397_3577669" +BW25113_3443__3prime yrhA__3prime 0 3577670 3577867 1 4363 0.3939393939393939 198 78 "3576397_3577669" +BW25113_3444 insA 0 3576843 3577118 1 705 0.2391304347826087 276 66 "IS1 repressor TnpA" +BW25113_3444__5prime insA__5prime 0 3576645 3576842 1 774 0.21212121212121213 198 42 "IS1 repressor TnpA" +BW25113_3444__3prime insA__3prime 0 3577119 3577316 1 714 0.25757575757575757 198 51 "IS1 repressor TnpA" +BW25113_3445 insB1 0 3577037 3577540 1 1909 0.2777777777777778 504 140 "IS1 transposase B" +BW25113_3445__5prime insB1__5prime 0 3576839 3577036 1 577 0.2777777777777778 198 55 "IS1 transposase B" +BW25113_3445__3prime insB1__3prime 0 3577541 3577738 1 439 0.12626262626262627 198 25 "IS1 transposase B" +BW25113_3446 yrhB 0 3578119 3578403 1 3124 0.34035087719298246 285 97 "stable heat shock chaperone" +BW25113_3446__5prime yrhB__5prime 0 3577921 3578118 1 353 0.08080808080808081 198 16 "stable heat shock chaperone" +BW25113_3446__3prime yrhB__3prime 0 3578404 3578601 1 2862 0.2878787878787879 198 57 "stable heat shock chaperone" +BW25113_3447 ggt 0 3578441 3580183 -1 7115 0.1434308663224326 1743 250 "gamma-glutamyltranspeptidase" +BW25113_3447__5prime ggt__5prime 0 3580184 3580381 -1 727 0.16161616161616163 198 32 "gamma-glutamyltranspeptidase" +BW25113_3447__3prime ggt__3prime 0 3578243 3578440 -1 1780 0.25757575757575757 198 51 "gamma-glutamyltranspeptidase" +BW25113_3448 yhhA 0 3580303 3580743 1 1297 0.1360544217687075 441 60 "DUF2756 family protein" +BW25113_3448__5prime yhhA__5prime 0 3580105 3580302 1 426 0.13131313131313133 198 26 "DUF2756 family protein" +BW25113_3448__3prime yhhA__3prime 0 3580744 3580941 1 619 0.18181818181818182 198 36 "DUF2756 family protein" +BW25113_3449 ugpQ 0 3580730 3581473 -1 1616 0.13440860215053763 744 100 "glycerophosphodiester phosphodiesterase and cytosolic" +BW25113_3449__5prime ugpQ__5prime 0 3581474 3581671 -1 127 0.06060606060606061 198 12 "glycerophosphodiester phosphodiesterase and cytosolic" +BW25113_3449__3prime ugpQ__3prime 0 3580532 3580729 -1 327 0.10101010101010101 198 20 "glycerophosphodiester phosphodiesterase and cytosolic" +BW25113_3450 ugpC 0 3581470 3582540 -1 2237 0.0896358543417367 1071 96 "glycerol-3-phosphate transporter subunit" +BW25113_3450__5prime ugpC__5prime 0 3582541 3582738 -1 633 0.14646464646464646 198 29 "glycerol-3-phosphate transporter subunit" +BW25113_3450__3prime ugpC__3prime 0 3581272 3581469 -1 214 0.0707070707070707 198 14 "glycerol-3-phosphate transporter subunit" +BW25113_3451 ugpE 0 3582542 3583387 -1 2294 0.10047281323877069 846 85 "glycerol-3-phosphate transporter subunit" +BW25113_3451__5prime ugpE__5prime 0 3583388 3583585 -1 413 0.1111111111111111 198 22 "glycerol-3-phosphate transporter subunit" +BW25113_3451__3prime ugpE__3prime 0 3582344 3582541 -1 414 0.14646464646464646 198 29 "glycerol-3-phosphate transporter subunit" +BW25113_3452 ugpA 0 3583384 3584271 -1 1786 0.10472972972972973 888 93 "glycerol-3-phosphate transporter subunit" +BW25113_3452__5prime ugpA__5prime 0 3584272 3584469 -1 904 0.19696969696969696 198 39 "glycerol-3-phosphate transporter subunit" +BW25113_3452__3prime ugpA__3prime 0 3583186 3583383 -1 886 0.12626262626262627 198 25 "glycerol-3-phosphate transporter subunit" +3583427_3584195 3583427_3584195 0 3583428 3584195 1 1636 0.10677083333333333 768 82 "3583427_3584195" +3583427_3584195__5prime 3583427_3584195__5prime 0 3583230 3583427 1 949 0.1414141414141414 198 28 "3583427_3584195" +3583427_3584195__3prime 3583427_3584195__3prime 0 3584196 3584393 1 515 0.1111111111111111 198 22 "3583427_3584195" +3584292_3584358 3584292_3584358 0 3584293 3584358 1 296 0.16666666666666666 66 11 "3584292_3584358" +3584292_3584358__5prime 3584292_3584358__5prime 0 3584095 3584292 1 312 0.0707070707070707 198 14 "3584292_3584358" +3584292_3584358__3prime 3584292_3584358__3prime 0 3584359 3584556 1 1139 0.2222222222222222 198 44 "3584292_3584358" +BW25113_3453 ugpB 0 3584369 3585685 -1 3308 0.10933940774487472 1317 144 "glycerol-3-phosphate transporter subunit" +BW25113_3453__5prime ugpB__5prime 0 3585686 3585883 -1 178 0.05555555555555555 198 11 "glycerol-3-phosphate transporter subunit" +BW25113_3453__3prime ugpB__3prime 0 3584171 3584368 -1 493 0.10606060606060606 198 21 "glycerol-3-phosphate transporter subunit" +3585923_3586022 3585923_3586022 0 3585924 3586022 1 305 0.20202020202020202 99 20 "3585923_3586022" +3585923_3586022__5prime 3585923_3586022__5prime 0 3585726 3585923 1 337 0.11616161616161616 198 23 "3585923_3586022" +3585923_3586022__3prime 3585923_3586022__3prime 0 3586023 3586220 1 475 0.12626262626262627 198 25 "3585923_3586022" +BW25113_3454 livF 0 3586084 3586797 -1 2214 0.13025210084033614 714 93 "leucine/isoleucine/valine transporter subunit" +BW25113_3454__5prime livF__5prime 0 3586798 3586995 -1 650 0.07575757575757576 198 15 "leucine/isoleucine/valine transporter subunit" +BW25113_3454__3prime livF__3prime 0 3585886 3586083 -1 730 0.21717171717171718 198 43 "leucine/isoleucine/valine transporter subunit" +BW25113_3455 livG 0 3586799 3587566 -1 2553 0.13932291666666666 768 107 "leucine/isoleucine/valine transporter subunit" +BW25113_3455__5prime livG__5prime 0 3587567 3587764 -1 348 0.08080808080808081 198 16 "leucine/isoleucine/valine transporter subunit" +BW25113_3455__3prime livG__3prime 0 3586601 3586798 -1 240 0.030303030303030304 198 6 "leucine/isoleucine/valine transporter subunit" +BW25113_3456 livM 0 3587563 3588840 -1 2777 0.10015649452269171 1278 128 "leucine/isoleucine/valine transporter subunit" +BW25113_3456__5prime livM__5prime 0 3588841 3589038 -1 746 0.17676767676767677 198 35 "leucine/isoleucine/valine transporter subunit" +BW25113_3456__3prime livM__3prime 0 3587365 3587562 -1 658 0.16666666666666666 198 33 "leucine/isoleucine/valine transporter subunit" +BW25113_3457 livH 0 3588837 3589763 -1 3054 0.15210355987055016 927 141 "leucine/isoleucine/valine transporter subunit" +BW25113_3457__5prime livH__5prime 0 3589764 3589961 -1 258 0.06565656565656566 198 13 "leucine/isoleucine/valine transporter subunit" +BW25113_3457__3prime livH__3prime 0 3588639 3588836 -1 441 0.11616161616161616 198 23 "leucine/isoleucine/valine transporter subunit" +BW25113_3458 livK 0 3589811 3590920 -1 3832 0.16666666666666666 1110 185 "leucine transporter subunit" +BW25113_3458__5prime livK__5prime 0 3590921 3591118 -1 230 0.045454545454545456 198 9 "leucine transporter subunit" +BW25113_3458__3prime livK__3prime 0 3589613 3589810 -1 848 0.21212121212121213 198 42 "leucine transporter subunit" +BW25113_3459 panM 0 3591344 3591727 1 1906 0.21614583333333334 384 83 "PanD autocleavage accelerator and panothenate synthesis" +BW25113_3459__5prime panM__5prime 0 3591146 3591343 1 250 0.06565656565656566 198 13 "PanD autocleavage accelerator and panothenate synthesis" +BW25113_3459__3prime panM__3prime 0 3591728 3591925 1 166 0.05555555555555555 198 11 "PanD autocleavage accelerator and panothenate synthesis" +3591756_3591855 3591756_3591855 0 3591757 3591855 1 150 0.10101010101010101 99 10 "3591756_3591855" +3591756_3591855__5prime 3591756_3591855__5prime 0 3591559 3591756 1 549 0.09595959595959595 198 19 "3591756_3591855" +3591756_3591855__3prime 3591756_3591855__3prime 0 3591856 3592053 1 161 0.045454545454545456 198 9 "3591756_3591855" +BW25113_3460 livJ 0 3591915 3593018 -1 4120 0.14855072463768115 1104 164 "leucine/isoleucine/valine transporter subunit" +BW25113_3460__5prime livJ__5prime 0 3593019 3593216 -1 12 0.005050505050505051 198 1 "leucine/isoleucine/valine transporter subunit" +BW25113_3460__3prime livJ__3prime 0 3591717 3591914 -1 212 0.07575757575757576 198 15 "leucine/isoleucine/valine transporter subunit" +BW25113_3461 rpoH 0 3593289 3594143 -1 0 0.0 855 0 "RNA polymerase and sigma 32 (sigma H) factor" +BW25113_3461__5prime rpoH__5prime 0 3594144 3594341 -1 267 0.08585858585858586 198 17 "RNA polymerase and sigma 32 (sigma H) factor" +BW25113_3461__3prime rpoH__3prime 0 3593091 3593288 -1 392 0.06565656565656566 198 13 "RNA polymerase and sigma 32 (sigma H) factor" +BW25113_3462 ftsX 0 3594388 3595446 -1 2590 0.11331444759206799 1059 120 "inner membrane putative ABC superfamily transporter permease" +BW25113_3462__5prime ftsX__5prime 0 3595447 3595644 -1 1148 0.23737373737373738 198 47 "inner membrane putative ABC superfamily transporter permease" +BW25113_3462__3prime ftsX__3prime 0 3594190 3594387 -1 457 0.13131313131313133 198 26 "inner membrane putative ABC superfamily transporter permease" +BW25113_3463 ftsE 0 3595439 3596107 -1 2711 0.18086696562032886 669 121 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_3463__5prime ftsE__5prime 0 3596108 3596305 -1 75 0.030303030303030304 198 6 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_3463__3prime ftsE__3prime 0 3595241 3595438 -1 369 0.14646464646464646 198 29 "putative ABC superfamily transporter ATP-binding subunit" +BW25113_3464 ftsY 0 3596110 3597603 -1 59 0.002677376171352075 1494 4 "Signal Recognition Particle (SRP) receptor" +BW25113_3464__5prime ftsY__5prime 0 3597604 3597801 -1 829 0.19696969696969696 198 39 "Signal Recognition Particle (SRP) receptor" +BW25113_3464__3prime ftsY__3prime 0 3595912 3596109 -1 696 0.18686868686868688 198 37 "Signal Recognition Particle (SRP) receptor" +BW25113_3465 rsmD 0 3597753 3598349 1 1750 0.135678391959799 597 81 "16S rRNA m(2)G966 methyltransferase and SAM-dependent" +BW25113_3465__5prime rsmD__5prime 0 3597555 3597752 1 792 0.17676767676767677 198 35 "16S rRNA m(2)G966 methyltransferase and SAM-dependent" +BW25113_3465__3prime rsmD__3prime 0 3598350 3598547 1 889 0.14646464646464646 198 29 "16S rRNA m(2)G966 methyltransferase and SAM-dependent" +BW25113_3466 yhhL 0 3598339 3598608 1 1163 0.12962962962962962 270 35 "DUF1145 family protein" +BW25113_3466__5prime yhhL__5prime 0 3598141 3598338 1 313 0.12121212121212122 198 24 "DUF1145 family protein" +BW25113_3466__3prime yhhL__3prime 0 3598609 3598806 1 926 0.20707070707070707 198 41 "DUF1145 family protein" +BW25113_3467 yhhM 0 3598611 3598970 -1 1000 0.13333333333333333 360 48 "DUF2500 family protein" +BW25113_3467__5prime yhhM__5prime 0 3598971 3599168 -1 251 0.10101010101010101 198 20 "DUF2500 family protein" +BW25113_3467__3prime yhhM__3prime 0 3598413 3598610 -1 632 0.1111111111111111 198 22 "DUF2500 family protein" +BW25113_3468 yhhN 0 3599111 3599737 1 3949 0.2535885167464115 627 159 "TMEM86 family putative inner membrane protein" +BW25113_3468__5prime yhhN__5prime 0 3598913 3599110 1 177 0.06565656565656566 198 13 "TMEM86 family putative inner membrane protein" +BW25113_3468__3prime yhhN__3prime 0 3599738 3599935 1 318 0.12626262626262627 198 25 "TMEM86 family putative inner membrane protein" +BW25113_3469 zntA 0 3599811 3602009 1 7021 0.14643019554342884 2199 322 "zinc and cobalt and lead efflux system" +BW25113_3469__5prime zntA__5prime 0 3599613 3599810 1 955 0.23232323232323232 198 46 "zinc and cobalt and lead efflux system" +BW25113_3469__3prime zntA__3prime 0 3602010 3602207 1 819 0.12121212121212122 198 24 "zinc and cobalt and lead efflux system" +BW25113_3470 tusA 0 3602111 3602356 -1 74 0.028455284552845527 246 7 "mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" +BW25113_3470__5prime tusA__5prime 0 3602357 3602554 -1 785 0.16666666666666666 198 33 "mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" +BW25113_3470__3prime tusA__3prime 0 3601913 3602110 -1 1184 0.21212121212121213 198 42 "mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" +BW25113_3471 yhhQ 0 3602577 3603242 1 2409 0.14114114114114115 666 94 "DUF165 family inner membrane protein" +BW25113_3471__5prime yhhQ__5prime 0 3602379 3602576 1 905 0.1717171717171717 198 34 "DUF165 family inner membrane protein" +BW25113_3471__3prime yhhQ__3prime 0 3603243 3603440 1 1176 0.1919191919191919 198 38 "DUF165 family inner membrane protein" +BW25113_3472 dcrB 0 3603315 3603872 1 3267 0.17025089605734767 558 95 "putative lipoprotein" +BW25113_3472__5prime dcrB__5prime 0 3603117 3603314 1 826 0.1414141414141414 198 28 "putative lipoprotein" +BW25113_3472__3prime dcrB__3prime 0 3603873 3604070 1 438 0.15151515151515152 198 30 "putative lipoprotein" +BW25113_3473 yhhS 0 3603876 3605093 -1 4294 0.15024630541871922 1218 183 "putative arabinose efflux transporter" +BW25113_3473__5prime yhhS__5prime 0 3605094 3605291 -1 266 0.09595959595959595 198 19 "putative arabinose efflux transporter" +BW25113_3473__3prime yhhS__3prime 0 3603678 3603875 -1 1776 0.19696969696969696 198 39 "putative arabinose efflux transporter" +BW25113_3474 yhhT 0 3605225 3606274 1 5794 0.16952380952380952 1050 178 "UPF0118 family putative transporter" +BW25113_3474__5prime yhhT__5prime 0 3605027 3605224 1 315 0.045454545454545456 198 9 "UPF0118 family putative transporter" +BW25113_3474__3prime yhhT__3prime 0 3606275 3606472 1 738 0.1919191919191919 198 38 "UPF0118 family putative transporter" +BW25113_3475 acpT 0 3606329 3606916 1 3049 0.22448979591836735 588 132 '"4''-phosphopantetheinyl transferase"' +BW25113_3475__5prime acpT__5prime 0 3606131 3606328 1 709 0.15151515151515152 198 30 '"4''-phosphopantetheinyl transferase"' +BW25113_3475__3prime acpT__3prime 0 3606917 3607114 1 651 0.18686868686868688 198 37 '"4''-phosphopantetheinyl transferase"' +BW25113_3476 nikA 0 3607027 3608601 1 5108 0.14222222222222222 1575 224 "nickel-binding and heme-binding periplasmic protein" +BW25113_3476__5prime nikA__5prime 0 3606829 3607026 1 1184 0.20202020202020202 198 40 "nickel-binding and heme-binding periplasmic protein" +BW25113_3476__3prime nikA__3prime 0 3608602 3608799 1 1169 0.18686868686868688 198 37 "nickel-binding and heme-binding periplasmic protein" +BW25113_3477 nikB 0 3608601 3609545 1 3783 0.15767195767195769 945 149 "nickel transporter subunit" +BW25113_3477__5prime nikB__5prime 0 3608403 3608600 1 780 0.17676767676767677 198 35 "nickel transporter subunit" +BW25113_3477__3prime nikB__3prime 0 3609546 3609743 1 813 0.16666666666666666 198 33 "nickel transporter subunit" +BW25113_3478 nikC 0 3609542 3610375 1 4035 0.2158273381294964 834 180 "nickel transporter subunit" +BW25113_3478__5prime nikC__5prime 0 3609344 3609541 1 507 0.15656565656565657 198 31 "nickel transporter subunit" +BW25113_3478__3prime nikC__3prime 0 3610376 3610573 1 1586 0.1717171717171717 198 34 "nickel transporter subunit" +BW25113_3479 nikD 0 3610375 3611139 1 3846 0.1607843137254902 765 123 "nickel transporter subunit" +BW25113_3479__5prime nikD__5prime 0 3610177 3610374 1 1303 0.29292929292929293 198 58 "nickel transporter subunit" +BW25113_3479__3prime nikD__3prime 0 3611140 3611337 1 694 0.09595959595959595 198 19 "nickel transporter subunit" +BW25113_3480 nikE 0 3611136 3611942 1 2092 0.12391573729863693 807 100 "nickel transporter subunit" +BW25113_3480__5prime nikE__5prime 0 3610938 3611135 1 948 0.18686868686868688 198 37 "nickel transporter subunit" +BW25113_3480__3prime nikE__3prime 0 3611943 3612140 1 845 0.10606060606060606 198 21 "nickel transporter subunit" +BW25113_3481 nikR 0 3611948 3612349 1 1972 0.1691542288557214 402 68 "transcriptional repressor and Ni-binding" +BW25113_3481__5prime nikR__5prime 0 3611750 3611947 1 246 0.08080808080808081 198 16 "transcriptional repressor and Ni-binding" +BW25113_3481__3prime nikR__3prime 0 3612350 3612547 1 306 0.06565656565656566 198 13 "transcriptional repressor and Ni-binding" +BW25113_3482 rhsB 0 3612552 3616787 1 24263 0.2504721435316336 4236 1061 "Rhs family putative polymorphic toxin and putative neighboring cell growth inhibitor" +BW25113_3482__5prime rhsB__5prime 0 3612354 3612551 1 306 0.06565656565656566 198 13 "Rhs family putative polymorphic toxin and putative neighboring cell growth inhibitor" +BW25113_3482__3prime rhsB__3prime 0 3616788 3616985 1 1360 0.2676767676767677 198 53 "Rhs family putative polymorphic toxin and putative neighboring cell growth inhibitor" +BW25113_3483 yhhH 0 3616759 3617142 1 3371 0.22395833333333334 384 86 "putative immunity protein for putative polymorphic toxin RhsB" +BW25113_3483__5prime yhhH__5prime 0 3616561 3616758 1 1119 0.18181818181818182 198 36 "putative immunity protein for putative polymorphic toxin RhsB" +BW25113_3483__3prime yhhH__3prime 0 3617143 3617340 1 3705 0.3333333333333333 198 66 "putative immunity protein for putative polymorphic toxin RhsB" +BW25113_4552 yrhC 0 3617247 3617597 1 1883 0.19373219373219372 351 68 "3617246_3617597" +BW25113_4552__5prime yrhC__5prime 0 3617049 3617246 1 4219 0.3383838383838384 198 67 "3617246_3617597" +BW25113_4552__3prime yrhC__3prime 0 3617598 3617795 1 330 0.13131313131313133 198 26 "3617246_3617597" +BW25113_3484 yhhI 0 3617738 3618874 1 13427 0.38698328935795956 1137 440 "putative transposase" +BW25113_3484__5prime yhhI__5prime 0 3617540 3617737 1 738 0.1717171717171717 198 34 "putative transposase" +BW25113_3484__3prime yhhI__3prime 0 3618875 3619072 1 556 0.1414141414141414 198 28 "putative transposase" +3618948_3619030 3618948_3619030 0 3618949 3619030 1 106 0.0975609756097561 82 8 "3618948_3619030" +3618948_3619030__5prime 3618948_3619030__5prime 0 3618751 3618948 1 1226 0.30808080808080807 198 61 "3618948_3619030" +3618948_3619030__3prime 3618948_3619030__3prime 0 3619031 3619228 1 491 0.14646464646464646 198 29 "3618948_3619030" +BW25113_3485 yhhJ 0 3619039 3620163 -1 2628 0.11466666666666667 1125 129 "inner membrane putative ABC transporter permease" +BW25113_3485__5prime yhhJ__5prime 0 3620164 3620361 -1 347 0.10101010101010101 198 20 "inner membrane putative ABC transporter permease" +BW25113_3485__3prime yhhJ__3prime 0 3618841 3619038 -1 643 0.1919191919191919 198 38 "inner membrane putative ABC transporter permease" +BW25113_3486 rbbA 0 3620163 3622898 -1 8083 0.11988304093567251 2736 328 "ribosome-associated ATPase: ATP-binding protein/ATP-binding membrane protein" +BW25113_3486__5prime rbbA__5prime 0 3622899 3623096 -1 577 0.05555555555555555 198 11 "ribosome-associated ATPase: ATP-binding protein/ATP-binding membrane protein" +BW25113_3486__3prime rbbA__3prime 0 3619965 3620162 -1 374 0.09090909090909091 198 18 "ribosome-associated ATPase: ATP-binding protein/ATP-binding membrane protein" +BW25113_3487 yhiI 0 3622895 3623962 -1 2910 0.11423220973782772 1068 122 "putative membrane fusion protein (MFP) of efflux pump" +BW25113_3487__5prime yhiI__5prime 0 3623963 3624160 -1 477 0.15656565656565657 198 31 "putative membrane fusion protein (MFP) of efflux pump" +BW25113_3487__3prime yhiI__3prime 0 3622697 3622894 -1 849 0.16666666666666666 198 33 "putative membrane fusion protein (MFP) of efflux pump" +BW25113_3488 yhiJ 0 3624328 3625950 -1 17714 0.35058533579790513 1623 569 "DUF4049 family protein" +BW25113_3488__5prime yhiJ__5prime 0 3625951 3626148 -1 1965 0.2727272727272727 198 54 "DUF4049 family protein" +BW25113_3488__3prime yhiJ__3prime 0 3624130 3624327 -1 1219 0.20707070707070707 198 41 "DUF4049 family protein" +BW25113_4660 yhiL 0 3626212 3627818 -1 14730 0.2912258867454885 1607 468 "3626211_3627818" +BW25113_4660__5prime yhiL__5prime 0 3627819 3628016 -1 276 0.08080808080808081 198 16 "3626211_3627818" +BW25113_4660__3prime yhiL__3prime 0 3626014 3626211 -1 2019 0.24242424242424243 198 48 "3626211_3627818" +BW25113_3491 yhiM 0 3628201 3629253 1 35910 0.5251661918328585 1053 553 "acid resistance protein and inner membrane" +BW25113_3491__5prime yhiM__5prime 0 3628003 3628200 1 1360 0.21717171717171718 198 43 "acid resistance protein and inner membrane" +BW25113_3491__3prime yhiM__3prime 0 3629254 3629451 1 1533 0.3434343434343434 198 68 "acid resistance protein and inner membrane" +BW25113_3492 yhiN 0 3629568 3630770 -1 4948 0.15544472152950956 1203 187 "putative oxidoreductase" +BW25113_3492__5prime yhiN__5prime 0 3630771 3630968 -1 19 0.005050505050505051 198 1 "putative oxidoreductase" +BW25113_3492__3prime yhiN__3prime 0 3629370 3629567 -1 881 0.25757575757575757 198 51 "putative oxidoreductase" +BW25113_3493 pitA 0 3631002 3632501 1 4576 0.17266666666666666 1500 259 "phosphate transporter and low-affinity; tellurite importer" +BW25113_3493__5prime pitA__5prime 0 3630804 3631001 1 66 0.030303030303030304 198 6 "phosphate transporter and low-affinity; tellurite importer" +BW25113_3493__3prime pitA__3prime 0 3632502 3632699 1 652 0.15656565656565657 198 31 "phosphate transporter and low-affinity; tellurite importer" +3632568_3632666 3632568_3632666 0 3632569 3632666 1 158 0.09183673469387756 98 9 "3632568_3632666" +3632568_3632666__5prime 3632568_3632666__5prime 0 3632371 3632568 1 776 0.21717171717171718 198 43 "3632568_3632666" +3632568_3632666__3prime 3632568_3632666__3prime 0 3632667 3632864 1 817 0.17676767676767677 198 35 "3632568_3632666" +BW25113_3494 uspB 0 3632745 3633080 -1 1781 0.2261904761904762 336 76 "universal stress (ethanol tolerance) protein B" +BW25113_3494__5prime uspB__5prime 0 3633081 3633278 -1 1775 0.2222222222222222 198 44 "universal stress (ethanol tolerance) protein B" +BW25113_3494__3prime uspB__3prime 0 3632547 3632744 -1 578 0.1111111111111111 198 22 "universal stress (ethanol tolerance) protein B" +BW25113_3495 uspA 0 3633471 3633905 1 3375 0.2206896551724138 435 96 "universal stress global response regulator" +BW25113_3495__5prime uspA__5prime 0 3633273 3633470 1 980 0.16666666666666666 198 33 "universal stress global response regulator" +BW25113_3495__3prime uspA__3prime 0 3633906 3634103 1 732 0.18686868686868688 198 37 "universal stress global response regulator" +BW25113_3496 dtpB 0 3634222 3635691 1 6312 0.1523809523809524 1470 224 "dipeptide and tripeptide permease B" +BW25113_3496__5prime dtpB__5prime 0 3634024 3634221 1 284 0.09090909090909091 198 18 "dipeptide and tripeptide permease B" +BW25113_3496__3prime dtpB__3prime 0 3635692 3635889 1 1123 0.26262626262626265 198 52 "dipeptide and tripeptide permease B" +BW25113_3497 rsmJ 0 3635740 3636492 -1 2208 0.15405046480743692 753 116 "16S rRNA m(2)G1516 methyltransferase and SAM-dependent" +BW25113_3497__5prime rsmJ__5prime 0 3636493 3636690 -1 814 0.12626262626262627 198 25 "16S rRNA m(2)G1516 methyltransferase and SAM-dependent" +BW25113_3497__3prime rsmJ__3prime 0 3635542 3635739 -1 883 0.19696969696969696 198 39 "16S rRNA m(2)G1516 methyltransferase and SAM-dependent" +BW25113_3498 prlC 0 3636500 3638542 -1 8161 0.15712187958883994 2043 321 "oligopeptidase A" +BW25113_3498__5prime prlC__5prime 0 3638543 3638740 -1 830 0.23232323232323232 198 46 "oligopeptidase A" +BW25113_3498__3prime prlC__3prime 0 3636302 3636499 -1 549 0.1414141414141414 198 28 "oligopeptidase A" +BW25113_3499 rlmJ 0 3638745 3639587 1 2432 0.11981020166073547 843 101 "23S rRNA m(6)A2030 methyltransferase and SAM-dependent" +BW25113_3499__5prime rlmJ__5prime 0 3638547 3638744 1 1000 0.23737373737373738 198 47 "23S rRNA m(6)A2030 methyltransferase and SAM-dependent" +BW25113_3499__3prime rlmJ__3prime 0 3639588 3639785 1 505 0.11616161616161616 198 23 "23S rRNA m(6)A2030 methyltransferase and SAM-dependent" +BW25113_3500 gor 0 3639659 3641011 1 2276 0.09830007390983 1353 133 "glutathione oxidoreductase" +BW25113_3500__5prime gor__5prime 0 3639461 3639658 1 746 0.13636363636363635 198 27 "glutathione oxidoreductase" +BW25113_3500__3prime gor__3prime 0 3641012 3641209 1 604 0.12121212121212122 198 24 "glutathione oxidoreductase" +BW25113_4613 dinQ 0 3641065 3641148 -1 191 0.09523809523809523 84 8 "UV-inducible membrane toxin and DinQ-AgrB type I toxin-antitoxin system" +BW25113_4613__5prime dinQ__5prime 0 3641149 3641346 -1 856 0.25252525252525254 198 50 "UV-inducible membrane toxin and DinQ-AgrB type I toxin-antitoxin system" +BW25113_4613__3prime dinQ__3prime 0 3640867 3641064 -1 451 0.12121212121212122 198 24 "UV-inducible membrane toxin and DinQ-AgrB type I toxin-antitoxin system" +BW25113_4712 agrA 0 3641423 3641506 1 209 0.19047619047619047 84 16 "Inactive antisense sRNA" +BW25113_4712__5prime agrA__5prime 0 3641225 3641422 1 581 0.18686868686868688 198 37 "Inactive antisense sRNA" +BW25113_4712__3prime agrA__3prime 0 3641507 3641704 1 541 0.18686868686868688 198 37 "Inactive antisense sRNA" +BW25113_4713 agrB 0 3641654 3641737 1 98 0.09523809523809523 84 8 "Antisense sRNA antitoxin for the DinQ toxin" +BW25113_4713__5prime agrB__5prime 0 3641456 3641653 1 573 0.18181818181818182 198 36 "Antisense sRNA antitoxin for the DinQ toxin" +BW25113_4713__3prime agrB__3prime 0 3641738 3641935 1 145 0.050505050505050504 198 10 "Antisense sRNA antitoxin for the DinQ toxin" +BW25113_3501 arsR 0 3641888 3642241 1 1025 0.1271186440677966 354 45 "arsenical resistance operon transcriptional repressor; autorepressor" +BW25113_3501__5prime arsR__5prime 0 3641690 3641887 1 167 0.050505050505050504 198 10 "arsenical resistance operon transcriptional repressor; autorepressor" +BW25113_3501__3prime arsR__3prime 0 3642242 3642439 1 858 0.13636363636363635 198 27 "arsenical resistance operon transcriptional repressor; autorepressor" +BW25113_3502 arsB 0 3642295 3643584 1 5856 0.18449612403100776 1290 238 "arsenite/antimonite transporter" +BW25113_3502__5prime arsB__5prime 0 3642097 3642294 1 140 0.050505050505050504 198 10 "arsenite/antimonite transporter" +BW25113_3502__3prime arsB__3prime 0 3643585 3643782 1 1063 0.19696969696969696 198 39 "arsenite/antimonite transporter" +BW25113_3503 arsC 0 3643597 3644022 1 1795 0.19014084507042253 426 81 "arsenate reductase" +BW25113_3503__5prime arsC__5prime 0 3643399 3643596 1 913 0.29797979797979796 198 59 "arsenate reductase" +BW25113_3503__3prime arsC__3prime 0 3644023 3644220 1 3105 0.41919191919191917 198 83 "arsenate reductase" +3644071_3644171 3644071_3644171 0 3644072 3644171 1 1595 0.42 100 42 "3644071_3644171" +3644071_3644171__5prime 3644071_3644171__5prime 0 3643874 3644071 1 1144 0.24242424242424243 198 48 "3644071_3644171" +3644071_3644171__3prime 3644071_3644171__3prime 0 3644172 3644369 1 6087 0.4444444444444444 198 88 "3644071_3644171" +BW25113_3504 yhiS 0 3644651 3647073 1 9905 0.19149814279818406 2423 464 "3644650_3647073" +BW25113_3504__5prime yhiS__5prime 0 3644453 3644650 1 241 0.1111111111111111 198 22 "3644650_3647073" +BW25113_3504__3prime yhiS__3prime 0 3647074 3647271 1 1402 0.25757575757575757 198 51 "3644650_3647073" +3645395_3646590 3645395_3646590 0 3645396 3646590 -1 2676 0.1790794979079498 1195 214 "3645395_3646590" +3645395_3646590__5prime 3645395_3646590__5prime 0 3646591 3646788 -1 305 0.12626262626262627 198 25 "3645395_3646590" +3645395_3646590__3prime 3645395_3646590__3prime 0 3645198 3645395 -1 1972 0.19696969696969696 198 39 "3645395_3646590" +BW25113_3505 insH1 0 3645542 3646558 -1 2272 0.17797443461160276 1017 181 "IS5 transposase and trans-activator" +BW25113_3505__5prime insH1__5prime 0 3646559 3646756 -1 491 0.18686868686868688 198 37 "IS5 transposase and trans-activator" +BW25113_3505__3prime insH1__3prime 0 3645344 3645541 -1 197 0.1111111111111111 198 22 "IS5 transposase and trans-activator" +BW25113_3506 slp 0 3647321 3647887 1 30516 0.6984126984126984 567 396 "outer membrane lipoprotein" +BW25113_3506__5prime slp__5prime 0 3647123 3647320 1 1541 0.31313131313131315 198 62 "outer membrane lipoprotein" +BW25113_3506__3prime slp__3prime 0 3647888 3648085 1 3049 0.4797979797979798 198 95 "outer membrane lipoprotein" +BW25113_3507 dctR 0 3648043 3648573 1 20866 0.4369114877589454 531 232 "LuxR family putative transcriptional regulator" +BW25113_3507__5prime dctR__5prime 0 3647845 3648042 1 9657 0.5505050505050505 198 109 "LuxR family putative transcriptional regulator" +BW25113_3507__3prime dctR__3prime 0 3648574 3648771 1 8528 0.5757575757575758 198 114 "LuxR family putative transcriptional regulator" +BW25113_3508 yhiD 0 3648615 3649262 -1 28961 0.5895061728395061 648 382 "putative Mg(2+) transport ATPase and inner membrane protein" +BW25113_3508__5prime yhiD__5prime 0 3649263 3649460 -1 2099 0.2676767676767677 198 53 "putative Mg(2+) transport ATPase and inner membrane protein" +BW25113_3508__3prime yhiD__3prime 0 3648417 3648614 -1 8167 0.5 198 99 "putative Mg(2+) transport ATPase and inner membrane protein" +BW25113_3509 hdeB 0 3649326 3649652 -1 6615 0.3516819571865443 327 115 "acid-resistance protein" +BW25113_3509__5prime hdeB__5prime 0 3649653 3649850 -1 4998 0.2727272727272727 198 54 "acid-resistance protein" +BW25113_3509__3prime hdeB__3prime 0 3649128 3649325 -1 6656 0.4595959595959596 198 91 "acid-resistance protein" +BW25113_3510 hdeA 0 3649768 3650100 -1 26421 0.5495495495495496 333 183 "stress response protein acid-resistance protein" +BW25113_3510__5prime hdeA__5prime 0 3650101 3650298 -1 524 0.09595959595959595 198 19 "stress response protein acid-resistance protein" +BW25113_3510__3prime hdeA__3prime 0 3649570 3649767 -1 2823 0.2878787878787879 198 57 "stress response protein acid-resistance protein" +BW25113_3511 hdeD 0 3650355 3650927 1 17464 0.4956369982547993 573 284 "acid-resistance membrane protein" +BW25113_3511__5prime hdeD__5prime 0 3650157 3650354 1 534 0.09090909090909091 198 18 "acid-resistance membrane protein" +BW25113_3511__3prime hdeD__3prime 0 3650928 3651125 1 2304 0.3333333333333333 198 66 "acid-resistance membrane protein" +BW25113_4704 arrS 0 3651346 3651414 -1 102 0.08695652173913043 69 6 "antisense sRNA ArrS and function unknown" +BW25113_4704__5prime arrS__5prime 0 3651415 3651612 -1 933 0.25757575757575757 198 51 "antisense sRNA ArrS and function unknown" +BW25113_4704__3prime arrS__3prime 0 3651148 3651345 -1 1100 0.23737373737373738 198 47 "antisense sRNA ArrS and function unknown" +BW25113_3512 gadE 0 3651726 3652253 1 3319 0.23863636363636365 528 126 "gad regulon transcriptional activator" +BW25113_3512__5prime gadE__5prime 0 3651528 3651725 1 1323 0.3484848484848485 198 69 "gad regulon transcriptional activator" +BW25113_3512__3prime gadE__3prime 0 3652254 3652451 1 3081 0.4696969696969697 198 93 "gad regulon transcriptional activator" +BW25113_3513 mdtE 0 3652592 3653749 1 2727 0.09930915371329879 1158 115 "anaerobic multidrug efflux transporter and ArcA-regulated" +BW25113_3513__5prime mdtE__5prime 0 3652394 3652591 1 1752 0.3282828282828283 198 65 "anaerobic multidrug efflux transporter and ArcA-regulated" +BW25113_3513__3prime mdtE__3prime 0 3653750 3653947 1 394 0.12626262626262627 198 25 "anaerobic multidrug efflux transporter and ArcA-regulated" +BW25113_3514 mdtF 0 3653774 3656887 1 11806 0.16473988439306358 3114 513 "anaerobic multidrug efflux transporter and ArcA-regulated" +BW25113_3514__5prime mdtF__5prime 0 3653576 3653773 1 377 0.10101010101010101 198 20 "anaerobic multidrug efflux transporter and ArcA-regulated" +BW25113_3514__3prime mdtF__3prime 0 3656888 3657085 1 2953 0.2828282828282828 198 56 "anaerobic multidrug efflux transporter and ArcA-regulated" +BW25113_3515 gadW 0 3657250 3657978 -1 9212 0.36213991769547327 729 264 "transcriptional activator of gadA and gadBC; repressor of gadX" +BW25113_3515__5prime gadW__5prime 0 3657979 3658176 -1 690 0.15151515151515152 198 30 "transcriptional activator of gadA and gadBC; repressor of gadX" +BW25113_3515__3prime gadW__3prime 0 3657052 3657249 -1 1650 0.20707070707070707 198 41 "transcriptional activator of gadA and gadBC; repressor of gadX" +BW25113_4452 gadY 0 3658224 3658328 1 3864 0.7238095238095238 105 76 "sRNA antisense regulator of gadAB transcriptional activator GadX mRNA and Hfq-dependent" +BW25113_4452__5prime gadY__5prime 0 3658026 3658223 1 675 0.13131313131313133 198 26 "sRNA antisense regulator of gadAB transcriptional activator GadX mRNA and Hfq-dependent" +BW25113_4452__3prime gadY__3prime 0 3658329 3658526 1 7692 0.4898989898989899 198 97 "sRNA antisense regulator of gadAB transcriptional activator GadX mRNA and Hfq-dependent" +BW25113_3516 gadX 0 3658346 3659170 -1 25882 0.4533333333333333 825 374 "acid resistance regulon transcriptional activator; autoactivator" +BW25113_3516__5prime gadX__5prime 0 3659171 3659368 -1 1013 0.2222222222222222 198 44 "acid resistance regulon transcriptional activator; autoactivator" +BW25113_3516__3prime gadX__3prime 0 3658148 3658345 -1 4215 0.4444444444444444 198 88 "acid resistance regulon transcriptional activator; autoactivator" +BW25113_3517 gadA 0 3659540 3660940 -1 11975 0.25910064239828695 1401 363 "glutamate decarboxylase A and PLP-dependent" +BW25113_3517__5prime gadA__5prime 0 3660941 3661138 -1 193 0.09090909090909091 198 18 "glutamate decarboxylase A and PLP-dependent" +BW25113_3517__3prime gadA__3prime 0 3659342 3659539 -1 579 0.17676767676767677 198 35 "glutamate decarboxylase A and PLP-dependent" +BW25113_3518 yhjA 0 3661151 3662548 -1 32651 0.4284692417739628 1398 599 "putative cytochrome C peroxidase" +BW25113_3518__5prime yhjA__5prime 0 3662549 3662746 -1 1334 0.20707070707070707 198 41 "putative cytochrome C peroxidase" +BW25113_3518__3prime yhjA__3prime 0 3660953 3661150 -1 153 0.0707070707070707 198 14 "putative cytochrome C peroxidase" +BW25113_3519 treF 0 3662952 3664601 1 12260 0.2084848484848485 1650 344 "cytoplasmic trehalase" +BW25113_3519__5prime treF__5prime 0 3662754 3662951 1 1678 0.2828282828282828 198 56 "cytoplasmic trehalase" +BW25113_3519__3prime treF__3prime 0 3664602 3664799 1 1538 0.32323232323232326 198 64 "cytoplasmic trehalase" +BW25113_3520 yhjB 0 3664652 3665254 -1 7892 0.39303482587064675 603 237 "putative DNA-binding transcriptional response regulator" +BW25113_3520__5prime yhjB__5prime 0 3665255 3665452 -1 1824 0.30303030303030304 198 60 "putative DNA-binding transcriptional response regulator" +BW25113_3520__3prime yhjB__3prime 0 3664454 3664651 -1 3299 0.3434343434343434 198 68 "putative DNA-binding transcriptional response regulator" +BW25113_3521 yhjC 0 3665774 3666673 1 3377 0.1622222222222222 900 146 "LysR family putative transcriptional regulator" +BW25113_3521__5prime yhjC__5prime 0 3665576 3665773 1 1129 0.1717171717171717 198 34 "LysR family putative transcriptional regulator" +BW25113_3521__3prime yhjC__3prime 0 3666674 3666871 1 567 0.15151515151515152 198 30 "LysR family putative transcriptional regulator" +BW25113_3522 yhjD 0 3666722 3667735 1 2872 0.14595660749506903 1014 148 "inner membrane putative BrbK family alternate lipid exporter" +BW25113_3522__5prime yhjD__5prime 0 3666524 3666721 1 1342 0.20707070707070707 198 41 "inner membrane putative BrbK family alternate lipid exporter" +BW25113_3522__3prime yhjD__3prime 0 3667736 3667933 1 423 0.12626262626262627 198 25 "inner membrane putative BrbK family alternate lipid exporter" +3667740_3667833 3667740_3667833 0 3667741 3667833 1 191 0.12903225806451613 93 12 "3667740_3667833" +3667740_3667833__5prime 3667740_3667833__5prime 0 3667543 3667740 1 763 0.22727272727272727 198 45 "3667740_3667833" +3667740_3667833__3prime 3667740_3667833__3prime 0 3667834 3668031 1 151 0.04040404040404041 198 8 "3667740_3667833" +BW25113_3523 yhjE 0 3668146 3669468 1 5449 0.17233560090702948 1323 228 "MFS superfamily sugar transport 1 family protein" +BW25113_3523__5prime yhjE__5prime 0 3667948 3668145 1 102 0.025252525252525252 198 5 "MFS superfamily sugar transport 1 family protein" +BW25113_3523__3prime yhjE__3prime 0 3669469 3669666 1 350 0.10101010101010101 198 20 "MFS superfamily sugar transport 1 family protein" +3669480_3669641 3669480_3669641 0 3669481 3669641 1 172 0.062111801242236024 161 10 "3669480_3669641" +3669480_3669641__5prime 3669480_3669641__5prime 0 3669283 3669480 1 916 0.18181818181818182 198 36 "3669480_3669641" +3669480_3669641__3prime 3669480_3669641__3prime 0 3669642 3669839 1 825 0.12121212121212122 198 24 "3669480_3669641" +BW25113_3524 yhjG 0 3669650 3671710 -1 5460 0.11887433284813198 2061 245 "putative inner membrane-anchored periplasmic AsmA family protein" +BW25113_3524__5prime yhjG__5prime 0 3671711 3671908 -1 655 0.15656565656565657 198 31 "putative inner membrane-anchored periplasmic AsmA family protein" +BW25113_3524__3prime yhjG__3prime 0 3669452 3669649 -1 321 0.09090909090909091 198 18 "putative inner membrane-anchored periplasmic AsmA family protein" +BW25113_3525 yhjH 0 3671780 3672547 -1 2032 0.1328125 768 102 "cyclic-di-GMP phosphodiesterase and FlhDC-regulated" +BW25113_3525__5prime yhjH__5prime 0 3672548 3672745 -1 326 0.10101010101010101 198 20 "cyclic-di-GMP phosphodiesterase and FlhDC-regulated" +BW25113_3525__3prime yhjH__3prime 0 3671582 3671779 -1 255 0.0707070707070707 198 14 "cyclic-di-GMP phosphodiesterase and FlhDC-regulated" +BW25113_3526 kdgK 0 3672779 3673708 1 4393 0.15053763440860216 930 140 "2-dehydro-3-deoxygluconokinase" +BW25113_3526__5prime kdgK__5prime 0 3672581 3672778 1 607 0.12626262626262627 198 25 "2-dehydro-3-deoxygluconokinase" +BW25113_3526__3prime kdgK__3prime 0 3673709 3673906 1 1187 0.2474747474747475 198 49 "2-dehydro-3-deoxygluconokinase" +3673726_3673802 3673726_3673802 0 3673727 3673802 1 750 0.32894736842105265 76 25 "3673726_3673802" +3673726_3673802__5prime 3673726_3673802__5prime 0 3673529 3673726 1 874 0.15151515151515152 198 30 "3673726_3673802" +3673726_3673802__3prime 3673726_3673802__3prime 0 3673803 3674000 1 740 0.1414141414141414 198 28 "3673726_3673802" +BW25113_3527 yhjJ 0 3673804 3675300 -1 6632 0.17234468937875752 1497 258 "putative periplasmic M16 family chaperone" +BW25113_3527__5prime yhjJ__5prime 0 3675301 3675498 -1 673 0.17676767676767677 198 35 "putative periplasmic M16 family chaperone" +BW25113_3527__3prime yhjJ__3prime 0 3673606 3673803 -1 1404 0.2222222222222222 198 44 "putative periplasmic M16 family chaperone" +BW25113_3528 dctA 0 3675521 3676807 -1 3869 0.13986013986013987 1287 180 "C4-dicarboxylic acid and orotate and citrate transporter" +BW25113_3528__5prime dctA__5prime 0 3676808 3677005 -1 387 0.08080808080808081 198 16 "C4-dicarboxylic acid and orotate and citrate transporter" +BW25113_3528__3prime dctA__3prime 0 3675323 3675520 -1 673 0.14646464646464646 198 29 "C4-dicarboxylic acid and orotate and citrate transporter" +BW25113_3529 yhjK 0 3676990 3678978 -1 10131 0.19457013574660634 1989 387 "cyclic-di-GMP phosphodiesterase" +BW25113_3529__5prime yhjK__5prime 0 3678979 3679176 -1 835 0.1717171717171717 198 34 "cyclic-di-GMP phosphodiesterase" +BW25113_3529__3prime yhjK__3prime 0 3676792 3676989 -1 309 0.06565656565656566 198 13 "cyclic-di-GMP phosphodiesterase" +3677375_3679069 3677375_3679069 0 3677376 3679069 1 8216 0.1894923258559622 1694 321 "3677375_3679069" +3677375_3679069__5prime 3677375_3679069__5prime 0 3677178 3677375 1 1205 0.20707070707070707 198 41 "3677375_3679069" +3677375_3679069__3prime 3677375_3679069__3prime 0 3679070 3679267 1 991 0.23232323232323232 198 46 "3677375_3679069" +BW25113_3530 bcsC 0 3679060 3682533 -1 14517 0.17443868739205526 3474 606 "cellulose synthase subunit" +BW25113_3530__5prime bcsC__5prime 0 3682534 3682731 -1 1500 0.1919191919191919 198 38 "cellulose synthase subunit" +BW25113_3530__3prime bcsC__3prime 0 3678862 3679059 -1 540 0.12121212121212122 198 24 "cellulose synthase subunit" +BW25113_3531 bcsZ 0 3682515 3683621 -1 5221 0.15898825654923215 1107 176 "endo-1 and 4-D-glucanase" +BW25113_3531__5prime bcsZ__5prime 0 3683622 3683819 -1 745 0.13636363636363635 198 27 "endo-1 and 4-D-glucanase" +BW25113_3531__3prime bcsZ__3prime 0 3682317 3682514 -1 702 0.2222222222222222 198 44 "endo-1 and 4-D-glucanase" +BW25113_3532 bcsB 0 3683628 3685967 -1 9937 0.16794871794871793 2340 393 "regulator of cellulose synthase and cyclic di-GMP binding" +BW25113_3532__5prime bcsB__5prime 0 3685968 3686165 -1 1415 0.13636363636363635 198 27 "regulator of cellulose synthase and cyclic di-GMP binding" +BW25113_3532__3prime bcsB__3prime 0 3683430 3683627 -1 862 0.15151515151515152 198 30 "regulator of cellulose synthase and cyclic di-GMP binding" +BW25113_3533 bcsA 0 3685978 3688596 -1 10496 0.15425735013363878 2619 404 "cellulose synthase and catalytic subunit" +BW25113_3533__5prime bcsA__5prime 0 3688597 3688794 -1 750 0.20202020202020202 198 40 "cellulose synthase and catalytic subunit" +BW25113_3533__3prime bcsA__3prime 0 3685780 3685977 -1 864 0.14646464646464646 198 29 "cellulose synthase and catalytic subunit" +BW25113_3534 bcsQ 0 3688593 3689345 -1 3633 0.2098273572377158 753 158 "3688592_3689345" +BW25113_3534__5prime bcsQ__5prime 0 3689346 3689543 -1 744 0.16666666666666666 198 33 "3688592_3689345" +BW25113_3534__3prime bcsQ__3prime 0 3688395 3688592 -1 381 0.0707070707070707 198 14 "3688592_3689345" +BW25113_3535 yhjR 0 3689357 3689545 -1 676 0.1693121693121693 189 32 "DUF2629 family protein" +BW25113_3535__5prime yhjR__5prime 0 3689546 3689743 -1 385 0.1111111111111111 198 22 "DUF2629 family protein" +BW25113_3535__3prime yhjR__3prime 0 3689159 3689356 -1 1941 0.26262626262626265 198 52 "DUF2629 family protein" +BW25113_3536 bcsE 0 3689818 3691389 1 10377 0.24045801526717558 1572 378 "cellulose production protein" +BW25113_3536__5prime bcsE__5prime 0 3689620 3689817 1 584 0.14646464646464646 198 29 "cellulose production protein" +BW25113_3536__3prime bcsE__3prime 0 3691390 3691587 1 874 0.18686868686868688 198 37 "cellulose production protein" +BW25113_3537 bcsF 0 3691386 3691577 1 916 0.21354166666666666 192 41 "DUF2636 family small membrane protein associated with cellulose production" +BW25113_3537__5prime bcsF__5prime 0 3691188 3691385 1 733 0.19696969696969696 198 39 "DUF2636 family small membrane protein associated with cellulose production" +BW25113_3537__3prime bcsF__3prime 0 3691578 3691775 1 370 0.15151515151515152 198 30 "DUF2636 family small membrane protein associated with cellulose production" +BW25113_3538 bcsG 0 3691574 3693253 1 5069 0.14285714285714285 1680 240 "DUF3260 family inner membrane protein associated with cellulose production" +BW25113_3538__5prime bcsG__5prime 0 3691376 3691573 1 947 0.21212121212121213 198 42 "DUF3260 family inner membrane protein associated with cellulose production" +BW25113_3538__3prime bcsG__3prime 0 3693254 3693451 1 460 0.16161616161616163 198 32 "DUF3260 family inner membrane protein associated with cellulose production" +BW25113_4453 ldrD 0 3693340 3693447 -1 342 0.21296296296296297 108 23 "toxic polypeptide and small" +BW25113_4453__5prime ldrD__5prime 0 3693448 3693645 -1 1186 0.2676767676767677 198 53 "toxic polypeptide and small" +BW25113_4453__3prime ldrD__3prime 0 3693142 3693339 -1 491 0.16666666666666666 198 33 "toxic polypeptide and small" +BW25113_4454 rdlD 0 3693496 3693561 1 551 0.3181818181818182 66 21 "sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat and with toxic peptide LdrD" +BW25113_4454__5prime rdlD__5prime 0 3693298 3693495 1 577 0.17676767676767677 198 35 "sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat and with toxic peptide LdrD" +BW25113_4454__3prime rdlD__3prime 0 3693562 3693759 1 1633 0.30808080808080807 198 61 "sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat and with toxic peptide LdrD" +BW25113_3539 yhjV 0 3693923 3695194 1 19166 0.3356918238993711 1272 427 "putative transporter" +BW25113_3539__5prime yhjV__5prime 0 3693725 3693922 1 2794 0.3838383838383838 198 76 "putative transporter" +BW25113_3539__3prime yhjV__3prime 0 3695195 3695392 1 549 0.10606060606060606 198 21 "putative transporter" +BW25113_3540 dppF 0 3695224 3696228 -1 3489 0.13333333333333333 1005 134 "dipeptide transporter" +BW25113_3540__5prime dppF__5prime 0 3696229 3696426 -1 473 0.12626262626262627 198 25 "dipeptide transporter" +BW25113_3540__3prime dppF__3prime 0 3695026 3695223 -1 1771 0.2474747474747475 198 49 "dipeptide transporter" +BW25113_3541 dppD 0 3696225 3697208 -1 3093 0.13211382113821138 984 130 "dipeptide/heme transporter" +BW25113_3541__5prime dppD__5prime 0 3697209 3697406 -1 514 0.15656565656565657 198 31 "dipeptide/heme transporter" +BW25113_3541__3prime dppD__3prime 0 3696027 3696224 -1 501 0.09090909090909091 198 18 "dipeptide/heme transporter" +BW25113_3542 dppC 0 3697219 3698121 -1 2527 0.12846068660022147 903 116 "dipeptide/heme transporter" +BW25113_3542__5prime dppC__5prime 0 3698122 3698319 -1 973 0.21212121212121213 198 42 "dipeptide/heme transporter" +BW25113_3542__3prime dppC__3prime 0 3697021 3697218 -1 395 0.15151515151515152 198 30 "dipeptide/heme transporter" +BW25113_3543 dppB 0 3698131 3699150 -1 3525 0.15588235294117647 1020 159 "dipeptide/heme transporter" +BW25113_3543__5prime dppB__5prime 0 3699151 3699348 -1 1283 0.15151515151515152 198 30 "dipeptide/heme transporter" +BW25113_3543__3prime dppB__3prime 0 3697933 3698130 -1 684 0.14646464646464646 198 29 "dipeptide/heme transporter" +3699322_3699420 3699322_3699420 0 3699323 3699420 1 16 0.01020408163265306 98 1 "3699322_3699420" +3699322_3699420__5prime 3699322_3699420__5prime 0 3699125 3699322 1 1363 0.15656565656565657 198 31 "3699322_3699420" +3699322_3699420__3prime 3699322_3699420__3prime 0 3699421 3699618 1 473 0.13131313131313133 198 26 "3699322_3699420" +BW25113_3544 dppA 0 3699458 3701065 -1 5255 0.15609452736318408 1608 251 "dipeptide transporter" +BW25113_3544__5prime dppA__5prime 0 3701066 3701263 -1 737 0.15656565656565657 198 31 "dipeptide transporter" +BW25113_3544__3prime dppA__3prime 0 3699260 3699457 -1 487 0.10101010101010101 198 20 "dipeptide transporter" +3701631_3701717 3701631_3701717 0 3701632 3701717 1 331 0.1511627906976744 86 13 "3701631_3701717" +3701631_3701717__5prime 3701631_3701717__5prime 0 3701434 3701631 1 202 0.045454545454545456 198 9 "3701631_3701717" +3701631_3701717__3prime 3701631_3701717__3prime 0 3701718 3701915 1 331 0.09090909090909091 198 18 "3701631_3701717" +BW25113_3545 proK 0 3701976 3702052 -1 519 0.15584415584415584 77 12 "tRNA-Pro" +BW25113_3545__5prime proK__5prime 0 3702053 3702250 -1 361 0.08080808080808081 198 16 "tRNA-Pro" +BW25113_3545__3prime proK__3prime 0 3701778 3701975 -1 138 0.050505050505050504 198 10 "tRNA-Pro" +BW25113_3546 eptB 0 3702144 3703835 -1 9883 0.1702127659574468 1692 288 "KDO phosphoethanolamine transferase and Ca(2+)-inducible" +BW25113_3546__5prime eptB__5prime 0 3703836 3704033 -1 226 0.06060606060606061 198 12 "KDO phosphoethanolamine transferase and Ca(2+)-inducible" +BW25113_3546__3prime eptB__3prime 0 3701946 3702143 -1 567 0.07575757575757576 198 15 "KDO phosphoethanolamine transferase and Ca(2+)-inducible" +BW25113_3547 yhjX 0 3704159 3705367 -1 5621 0.19272125723738626 1209 233 "pyruvate-inducible inner membrane protein and putative transporter" +BW25113_3547__5prime yhjX__5prime 0 3705368 3705565 -1 638 0.11616161616161616 198 23 "pyruvate-inducible inner membrane protein and putative transporter" +BW25113_3547__3prime yhjX__3prime 0 3703961 3704158 -1 248 0.13636363636363635 198 27 "pyruvate-inducible inner membrane protein and putative transporter" +BW25113_3548 yhjY 0 3705596 3706294 -1 3969 0.22031473533619456 699 154 "autotransporter beta-domain protein" +BW25113_3548__5prime yhjY__5prime 0 3706295 3706492 -1 738 0.1717171717171717 198 34 "autotransporter beta-domain protein" +BW25113_3548__3prime yhjY__3prime 0 3705398 3705595 -1 481 0.11616161616161616 198 23 "autotransporter beta-domain protein" +BW25113_3549 tag 0 3706452 3707015 1 2481 0.1524822695035461 564 86 "3-methyl-adenine DNA glycosylase I and constitutive" +BW25113_3549__5prime tag__5prime 0 3706254 3706451 1 502 0.1414141414141414 198 28 "3-methyl-adenine DNA glycosylase I and constitutive" +BW25113_3549__3prime tag__3prime 0 3707016 3707213 1 801 0.18181818181818182 198 36 "3-methyl-adenine DNA glycosylase I and constitutive" +BW25113_3550 yiaC 0 3707012 3707452 1 1420 0.12698412698412698 441 56 "putative acyl-CoA transferase" +BW25113_3550__5prime yiaC__5prime 0 3706814 3707011 1 1005 0.15656565656565657 198 31 "putative acyl-CoA transferase" +BW25113_3550__3prime yiaC__3prime 0 3707453 3707650 1 609 0.1717171717171717 198 34 "putative acyl-CoA transferase" +BW25113_3551 bisC 0 3707421 3709754 -1 7229 0.14867180805484148 2334 347 "biotin sulfoxide reductase" +BW25113_3551__5prime bisC__5prime 0 3709755 3709952 -1 461 0.11616161616161616 198 23 "biotin sulfoxide reductase" +BW25113_3551__3prime bisC__3prime 0 3707223 3707420 -1 469 0.08585858585858586 198 17 "biotin sulfoxide reductase" +BW25113_3552 yiaD 0 3709907 3710566 1 3570 0.21212121212121213 660 140 "multicopy suppressor of bamB; outer membrane lipoprotein" +BW25113_3552__5prime yiaD__5prime 0 3709709 3709906 1 428 0.09595959595959595 198 19 "multicopy suppressor of bamB; outer membrane lipoprotein" +BW25113_3552__3prime yiaD__3prime 0 3710567 3710764 1 1300 0.20202020202020202 198 40 "multicopy suppressor of bamB; outer membrane lipoprotein" +BW25113_3553 ghrB 0 3710670 3711644 1 3934 0.1712820512820513 975 167 "glyoxylate/hydroxypyruvate reductase B" +BW25113_3553__5prime ghrB__5prime 0 3710472 3710669 1 1098 0.19696969696969696 198 39 "glyoxylate/hydroxypyruvate reductase B" +BW25113_3553__3prime ghrB__3prime 0 3711645 3711842 1 1862 0.3333333333333333 198 66 "glyoxylate/hydroxypyruvate reductase B" +BW25113_3554 yiaF 0 3711694 3712404 -1 5188 0.26019690576652604 711 185 "barrier effect co-colonization resistance factor; DUF3053 family lipoprotein" +BW25113_3554__5prime yiaF__5prime 0 3712405 3712602 -1 1590 0.26262626262626265 198 52 "barrier effect co-colonization resistance factor; DUF3053 family lipoprotein" +BW25113_3554__3prime yiaF__3prime 0 3711496 3711693 -1 833 0.18686868686868688 198 37 "barrier effect co-colonization resistance factor; DUF3053 family lipoprotein" +BW25113_3555 yiaG 0 3712838 3713128 1 998 0.13745704467353953 291 40 "HTH_CROC1 family putative transcriptional regulator" +BW25113_3555__5prime yiaG__5prime 0 3712640 3712837 1 613 0.13636363636363635 198 27 "HTH_CROC1 family putative transcriptional regulator" +BW25113_3555__3prime yiaG__3prime 0 3713129 3713326 1 457 0.12121212121212122 198 24 "HTH_CROC1 family putative transcriptional regulator" +BW25113_3556 cspA 0 3713409 3713621 1 284 0.08450704225352113 213 18 "RNA chaperone and antiterminator and cold-inducible" +BW25113_3556__5prime cspA__5prime 0 3713211 3713408 1 563 0.16161616161616163 198 32 "RNA chaperone and antiterminator and cold-inducible" +BW25113_3556__3prime cspA__3prime 0 3713622 3713819 1 664 0.1414141414141414 198 28 "RNA chaperone and antiterminator and cold-inducible" +BW25113_4647 mokA 0 3713808 3713992 -1 1510 0.25405405405405407 185 47 "3713807_3713992" +BW25113_4647__5prime mokA__5prime 0 3713993 3714190 -1 1486 0.3181818181818182 198 63 "3713807_3713992" +BW25113_4647__3prime mokA__3prime 0 3713610 3713807 -1 499 0.11616161616161616 198 23 "3713807_3713992" +BW25113_4455 hokA 0 3713808 3713960 -1 1114 0.2222222222222222 153 34 "toxic polypeptide and small" +BW25113_4455__5prime hokA__5prime 0 3713961 3714158 -1 1635 0.3383838383838384 198 67 "toxic polypeptide and small" +BW25113_4455__3prime hokA__3prime 0 3713610 3713807 -1 499 0.11616161616161616 198 23 "toxic polypeptide and small" +BW25113_3557 insJ 0 3714040 3714561 1 2426 0.19157088122605365 522 100 "IS150 transposase A" +BW25113_3557__5prime insJ__5prime 0 3713842 3714039 1 1646 0.2727272727272727 198 54 "IS150 transposase A" +BW25113_3557__3prime insJ__3prime 0 3714562 3714759 1 1697 0.30808080808080807 198 61 "IS150 transposase A" +BW25113_3558 insK 0 3714558 3715409 1 12534 0.3779342723004695 852 322 "IS150 transposase B" +BW25113_3558__5prime insK__5prime 0 3714360 3714557 1 476 0.1111111111111111 198 22 "IS150 transposase B" +BW25113_3558__3prime insK__3prime 0 3715410 3715607 1 2535 0.30303030303030304 198 60 "IS150 transposase B" +BW25113_4614 sokA 0 3715436 3715465 1 489 0.5666666666666667 30 17 "3715435_3715465" +BW25113_4614__5prime sokA__5prime 0 3715238 3715435 1 2468 0.3686868686868687 198 73 "3715435_3715465" +BW25113_4614__3prime sokA__3prime 0 3715466 3715663 1 1330 0.17676767676767677 198 35 "3715435_3715465" +BW25113_3559 glyS 0 3715688 3717757 -1 37 0.0014492753623188406 2070 3 "glycine tRNA synthetase and beta subunit" +BW25113_3559__5prime glyS__5prime 0 3717758 3717955 -1 0 0.0 198 0 "glycine tRNA synthetase and beta subunit" +BW25113_3559__3prime glyS__3prime 0 3715490 3715687 -1 1064 0.12121212121212122 198 24 "glycine tRNA synthetase and beta subunit" +BW25113_3560 glyQ 0 3717767 3718678 -1 0 0.0 912 0 "glycine tRNA synthetase and alpha subunit" +BW25113_3560__5prime glyQ__5prime 0 3718679 3718876 -1 1014 0.11616161616161616 198 23 "glycine tRNA synthetase and alpha subunit" +BW25113_3560__3prime glyQ__3prime 0 3717569 3717766 -1 0 0.0 198 0 "glycine tRNA synthetase and alpha subunit" +BW25113_4553 ysaB 0 3718773 3719072 -1 4546 0.29333333333333333 300 88 "uncharacterized protein" +BW25113_4553__5prime ysaB__5prime 0 3719073 3719270 -1 1302 0.2828282828282828 198 56 "uncharacterized protein" +BW25113_4553__3prime ysaB__3prime 0 3718575 3718772 -1 0 0.0 198 0 "uncharacterized protein" +BW25113_3561 wecH 0 3719247 3720242 1 25963 0.3965863453815261 996 395 "O-acetyltransferase for enterobacterial common antigen (ECA)" +BW25113_3561__5prime wecH__5prime 0 3719049 3719246 1 1135 0.2727272727272727 198 54 "O-acetyltransferase for enterobacterial common antigen (ECA)" +BW25113_3561__3prime wecH__3prime 0 3720243 3720440 1 5796 0.5454545454545454 198 108 "O-acetyltransferase for enterobacterial common antigen (ECA)" +BW25113_3561 wecH 0 3719995 3720141 1 1630 0.4013605442176871 147 59 "3719994_3720141" +BW25113_3561__5prime wecH__5prime 0 3719797 3719994 1 11203 0.5454545454545454 198 108 "3719994_3720141" +BW25113_3561__3prime wecH__3prime 0 3720142 3720339 1 4000 0.43434343434343436 198 86 "3719994_3720141" +BW25113_3562 yiaA 0 3720284 3720721 -1 13341 0.5707762557077626 438 250 "YiaAB family inner membrane protein and tandem domains" +BW25113_3562__5prime yiaA__5prime 0 3720722 3720919 -1 3595 0.4444444444444444 198 88 "YiaAB family inner membrane protein and tandem domains" +BW25113_3562__3prime yiaA__3prime 0 3720086 3720283 -1 3591 0.3838383838383838 198 76 "YiaAB family inner membrane protein and tandem domains" +3720632_3722075 3720632_3722075 0 3720633 3722075 1 18068 0.31185031185031187 1443 450 "3720632_3722075" +3720632_3722075__5prime 3720632_3722075__5prime 0 3720435 3720632 1 6255 0.5909090909090909 198 117 "3720632_3722075" +3720632_3722075__3prime 3720632_3722075__3prime 0 3722076 3722273 1 772 0.1717171717171717 198 34 "3720632_3722075" +BW25113_3563 yiaB 0 3720767 3721108 -1 4108 0.3362573099415205 342 115 "YiaAB family inner membrane protein" +BW25113_3563__5prime yiaB__5prime 0 3721109 3721306 -1 2245 0.29797979797979796 198 59 "YiaAB family inner membrane protein" +BW25113_3563__3prime yiaB__3prime 0 3720569 3720766 -1 7148 0.6464646464646465 198 128 "YiaAB family inner membrane protein" +BW25113_3564 xylB 0 3721277 3722731 -1 8970 0.21512027491408936 1455 313 "xylulokinase" +BW25113_3564__5prime xylB__5prime 0 3722732 3722929 -1 754 0.18686868686868688 198 37 "xylulokinase" +BW25113_3564__3prime xylB__3prime 0 3721079 3721276 -1 1964 0.23737373737373738 198 47 "xylulokinase" +BW25113_3565 xylA 0 3722803 3724125 -1 9434 0.19576719576719576 1323 259 "D-xylose isomerase" +BW25113_3565__5prime xylA__5prime 0 3724126 3724323 -1 2385 0.4292929292929293 198 85 "D-xylose isomerase" +BW25113_3565__3prime xylA__3prime 0 3722605 3722802 -1 1097 0.3333333333333333 198 66 "D-xylose isomerase" +BW25113_3566 xylF 0 3724491 3725483 1 22972 0.45317220543806647 993 450 "D-xylose transporter subunit" +BW25113_3566__5prime xylF__5prime 0 3724293 3724490 1 4793 0.3484848484848485 198 69 "D-xylose transporter subunit" +BW25113_3566__3prime xylF__3prime 0 3725484 3725681 1 3933 0.41919191919191917 198 83 "D-xylose transporter subunit" +BW25113_3567 xylG 0 3725561 3727102 1 31877 0.4072632944228275 1542 628 "fused D-xylose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_3567__5prime xylG__5prime 0 3725363 3725560 1 4445 0.51010101010101 198 101 "fused D-xylose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_3567__3prime xylG__3prime 0 3727103 3727300 1 242 0.07575757575757576 198 15 "fused D-xylose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_3568 xylH 0 3727080 3728261 1 2949 0.11505922165820642 1182 136 "D-xylose ABC transporter permease subunit" +BW25113_3568__5prime xylH__5prime 0 3726882 3727079 1 3185 0.29797979797979796 198 59 "D-xylose ABC transporter permease subunit" +BW25113_3568__3prime xylH__3prime 0 3728262 3728459 1 436 0.12121212121212122 198 24 "D-xylose ABC transporter permease subunit" +BW25113_3569 xylR 0 3728339 3729517 1 2833 0.13655640373197625 1179 161 "xylose divergent operon transcriptional activator" +BW25113_3569__5prime xylR__5prime 0 3728141 3728338 1 455 0.1111111111111111 198 22 "xylose divergent operon transcriptional activator" +BW25113_3569__3prime xylR__3prime 0 3729518 3729715 1 574 0.13636363636363635 198 27 "xylose divergent operon transcriptional activator" +3729513_3729684 3729513_3729684 0 3729514 3729684 1 527 0.15204678362573099 171 26 "3729513_3729684" +3729513_3729684__5prime 3729513_3729684__5prime 0 3729316 3729513 1 590 0.15656565656565657 198 31 "3729513_3729684" +3729513_3729684__3prime 3729513_3729684__3prime 0 3729685 3729882 1 1121 0.21717171717171718 198 43 "3729513_3729684" +BW25113_3570 bax 0 3729713 3730537 -1 4167 0.2109090909090909 825 174 "putative glucosaminidase" +BW25113_3570__5prime bax__5prime 0 3730538 3730735 -1 258 0.06060606060606061 198 12 "putative glucosaminidase" +BW25113_3570__3prime bax__3prime 0 3729515 3729712 -1 574 0.13636363636363635 198 27 "putative glucosaminidase" +BW25113_3571 malS 0 3730857 3732887 1 5056 0.12998522895125553 2031 264 "alpha-amylase" +BW25113_3571__5prime malS__5prime 0 3730659 3730856 1 170 0.06565656565656566 198 13 "alpha-amylase" +BW25113_3571__3prime malS__3prime 0 3732888 3733085 1 955 0.13636363636363635 198 27 "alpha-amylase" +3732702_3733053 3732702_3733053 0 3732703 3733053 1 1258 0.13675213675213677 351 48 "3732702_3733053" +3732702_3733053__5prime 3732702_3733053__5prime 0 3732505 3732702 1 502 0.15656565656565657 198 31 "3732702_3733053" +3732702_3733053__3prime 3732702_3733053__3prime 0 3733054 3733251 1 779 0.18181818181818182 198 36 "3732702_3733053" +BW25113_3572 avtA 0 3733065 3734318 1 5515 0.17065390749601275 1254 214 "valine-pyruvate aminotransferase 1" +BW25113_3572__5prime avtA__5prime 0 3732867 3733064 1 990 0.15151515151515152 198 30 "valine-pyruvate aminotransferase 1" +BW25113_3572__3prime avtA__3prime 0 3734319 3734516 1 455 0.1111111111111111 198 22 "valine-pyruvate aminotransferase 1" +3734323_3734421 3734323_3734421 0 3734324 3734421 1 24 0.04081632653061224 98 4 "3734323_3734421" +3734323_3734421__5prime 3734323_3734421__5prime 0 3734126 3734323 1 773 0.19696969696969696 198 39 "3734323_3734421" +3734323_3734421__3prime 3734323_3734421__3prime 0 3734422 3734619 1 923 0.20707070707070707 198 41 "3734323_3734421" +BW25113_3573 ysaA 0 3734469 3734942 -1 1863 0.16666666666666666 474 79 "putative hydrogenase and 4Fe-4S ferredoxin-type component" +BW25113_3573__5prime ysaA__5prime 0 3734943 3735140 -1 763 0.1414141414141414 198 28 "putative hydrogenase and 4Fe-4S ferredoxin-type component" +BW25113_3573__3prime ysaA__3prime 0 3734271 3734468 -1 411 0.10606060606060606 198 21 "putative hydrogenase and 4Fe-4S ferredoxin-type component" +BW25113_3574 yiaJ 0 3735044 3735892 -1 2438 0.143698468786808 849 122 "transcriptional repressor of yiaK-S operon" +BW25113_3574__5prime yiaJ__5prime 0 3735893 3736090 -1 71 0.025252525252525252 198 5 "transcriptional repressor of yiaK-S operon" +BW25113_3574__3prime yiaJ__3prime 0 3734846 3735043 -1 882 0.16161616161616163 198 32 "transcriptional repressor of yiaK-S operon" +BW25113_3575 yiaK 0 3736093 3737091 1 3392 0.13513513513513514 999 135 "2 and 3-diketo-L-gulonate reductase and NADH-dependent" +BW25113_3575__5prime yiaK__5prime 0 3735895 3736092 1 71 0.025252525252525252 198 5 "2 and 3-diketo-L-gulonate reductase and NADH-dependent" +BW25113_3575__3prime yiaK__3prime 0 3737092 3737289 1 6754 0.25757575757575757 198 51 "2 and 3-diketo-L-gulonate reductase and NADH-dependent" +BW25113_3576 yiaL 0 3737103 3737570 1 8734 0.25 468 117 "DUF386 family protein" +BW25113_3576__5prime yiaL__5prime 0 3736905 3737102 1 723 0.08585858585858586 198 17 "DUF386 family protein" +BW25113_3576__3prime yiaL__3prime 0 3737571 3737768 1 1593 0.2474747474747475 198 49 "DUF386 family protein" +BW25113_3577 yiaM 0 3737688 3738161 1 7035 0.34810126582278483 474 165 "2 and 3-diketo-L-gulonate TRAP transporter small permease protein" +BW25113_3577__5prime yiaM__5prime 0 3737490 3737687 1 2352 0.3282828282828283 198 65 "2 and 3-diketo-L-gulonate TRAP transporter small permease protein" +BW25113_3577__3prime yiaM__3prime 0 3738162 3738359 1 1432 0.2474747474747475 198 49 "2 and 3-diketo-L-gulonate TRAP transporter small permease protein" +BW25113_3578 yiaN 0 3738164 3739441 1 12303 0.29107981220657275 1278 372 "2 and 3-diketo-L-gulonate TRAP transporter large permease protein" +BW25113_3578__5prime yiaN__5prime 0 3737966 3738163 1 3312 0.32323232323232326 198 64 "2 and 3-diketo-L-gulonate TRAP transporter large permease protein" +BW25113_3578__3prime yiaN__3prime 0 3739442 3739639 1 2351 0.36363636363636365 198 72 "2 and 3-diketo-L-gulonate TRAP transporter large permease protein" +BW25113_3579 yiaO 0 3739454 3740440 1 7146 0.24113475177304963 987 238 "2 and 3-diketo-L-gulonate-binding periplasmic protein" +BW25113_3579__5prime yiaO__5prime 0 3739256 3739453 1 1112 0.21717171717171718 198 43 "2 and 3-diketo-L-gulonate-binding periplasmic protein" +BW25113_3579__3prime yiaO__3prime 0 3740441 3740638 1 530 0.10101010101010101 198 20 "2 and 3-diketo-L-gulonate-binding periplasmic protein" +BW25113_3580 lyxK 0 3740444 3741940 1 3747 0.11556446225784903 1497 173 "L-xylulose kinase" +BW25113_3580__5prime lyxK__5prime 0 3740246 3740443 1 869 0.20202020202020202 198 40 "L-xylulose kinase" +BW25113_3580__3prime lyxK__3prime 0 3741941 3742138 1 877 0.07575757575757576 198 15 "L-xylulose kinase" +BW25113_3581 sgbH 0 3741937 3742599 1 2310 0.10256410256410256 663 68 "3-keto-L-gulonate 6-phosphate decarboxylase" +BW25113_3581__5prime sgbH__5prime 0 3741739 3741936 1 482 0.09090909090909091 198 18 "3-keto-L-gulonate 6-phosphate decarboxylase" +BW25113_3581__3prime sgbH__3prime 0 3742600 3742797 1 114 0.050505050505050504 198 10 "3-keto-L-gulonate 6-phosphate decarboxylase" +BW25113_3582 sgbU 0 3742592 3743452 1 1877 0.13240418118466898 861 114 "putative L-xylulose 5-phosphate 3-epimerase" +BW25113_3582__5prime sgbU__5prime 0 3742394 3742591 1 451 0.1414141414141414 198 28 "putative L-xylulose 5-phosphate 3-epimerase" +BW25113_3582__3prime sgbU__3prime 0 3743453 3743650 1 711 0.19696969696969696 198 39 "putative L-xylulose 5-phosphate 3-epimerase" +BW25113_3583 sgbE 0 3743446 3744141 1 2701 0.1810344827586207 696 126 "L-ribulose-5-phosphate 4-epimerase" +BW25113_3583__5prime sgbE__5prime 0 3743248 3743445 1 497 0.10606060606060606 198 21 "L-ribulose-5-phosphate 4-epimerase" +BW25113_3583__3prime sgbE__3prime 0 3744142 3744339 1 1091 0.21717171717171718 198 43 "L-ribulose-5-phosphate 4-epimerase" +BW25113_4648 ysaC 0 3744173 3744274 -1 511 0.18627450980392157 102 19 "3744172_3744274" +BW25113_4648__5prime ysaC__5prime 0 3744275 3744472 -1 1162 0.1919191919191919 198 38 "3744172_3744274" +BW25113_4648__3prime ysaC__3prime 0 3743975 3744172 -1 575 0.16666666666666666 198 33 "3744172_3744274" +BW25113_4649 ysaD 0 3744278 3744469 1 1157 0.19270833333333334 192 37 "3744277_3744469" +BW25113_4649__5prime ysaD__5prime 0 3744080 3744277 1 930 0.20707070707070707 198 41 "3744277_3744469" +BW25113_4649__3prime ysaD__3prime 0 3744470 3744667 1 779 0.16161616161616163 198 32 "3744277_3744469" +BW25113_3584 yiaT 0 3744488 3745228 -1 6003 0.2901484480431849 741 215 "putative outer membrane protein" +BW25113_3584__5prime yiaT__5prime 0 3745229 3745426 -1 286 0.09595959595959595 198 19 "putative outer membrane protein" +BW25113_3584__3prime yiaT__3prime 0 3744290 3744487 -1 897 0.16161616161616163 198 32 "putative outer membrane protein" +BW25113_3585 yiaU 0 3745352 3746326 1 14227 0.3476923076923077 975 339 "putative DNA-binding transcriptional regulator" +BW25113_3585__5prime yiaU__5prime 0 3745154 3745351 1 516 0.10606060606060606 198 21 "putative DNA-binding transcriptional regulator" +BW25113_3585__3prime yiaU__3prime 0 3746327 3746524 1 671 0.16666666666666666 198 33 "putative DNA-binding transcriptional regulator" +BW25113_3586 yiaV 0 3746323 3747459 -1 12252 0.28144239226033424 1137 320 "membrane fusion protein (MFP) component of efflux pump and signal anchor" +BW25113_3586__5prime yiaV__5prime 0 3747460 3747657 -1 5711 0.6464646464646465 198 128 "membrane fusion protein (MFP) component of efflux pump and signal anchor" +BW25113_3586__3prime yiaV__3prime 0 3746125 3746322 -1 1178 0.25252525252525254 198 50 "membrane fusion protein (MFP) component of efflux pump and signal anchor" +BW25113_3587 yiaW 0 3747465 3747788 -1 6478 0.5092592592592593 324 165 "DUF3302 family inner membrane protein" +BW25113_3587__5prime yiaW__5prime 0 3747789 3747986 -1 154 0.04040404040404041 198 8 "DUF3302 family inner membrane protein" +BW25113_3587__3prime yiaW__3prime 0 3747267 3747464 -1 2445 0.35858585858585856 198 71 "DUF3302 family inner membrane protein" +3748219_3748301 3748219_3748301 0 3748220 3748301 1 1110 0.2682926829268293 82 22 "3748219_3748301" +3748219_3748301__5prime 3748219_3748301__5prime 0 3748022 3748219 1 2187 0.3838383838383838 198 76 "3748219_3748301" +3748219_3748301__3prime 3748219_3748301__3prime 0 3748302 3748499 1 555 0.16161616161616163 198 32 "3748219_3748301" +BW25113_3588 aldB 0 3748333 3749871 -1 5816 0.142949967511371 1539 220 "aldehyde dehydrogenase B" +BW25113_3588__5prime aldB__5prime 0 3749872 3750069 -1 638 0.11616161616161616 198 23 "aldehyde dehydrogenase B" +BW25113_3588__3prime aldB__3prime 0 3748135 3748332 -1 2376 0.29292929292929293 198 58 "aldehyde dehydrogenase B" +BW25113_3589 yiaY 0 3750036 3751187 -1 10747 0.2803819444444444 1152 323 "putative Fe-containing alcohol dehydrogenase and Pfam00465 family" +BW25113_3589__5prime yiaY__5prime 0 3751188 3751385 -1 855 0.14646464646464646 198 29 "putative Fe-containing alcohol dehydrogenase and Pfam00465 family" +BW25113_3589__3prime yiaY__3prime 0 3749838 3750035 -1 988 0.12626262626262627 198 25 "putative Fe-containing alcohol dehydrogenase and Pfam00465 family" +BW25113_3590 selB 0 3751377 3753221 -1 9162 0.16476964769647698 1845 304 "selenocysteinyl-tRNA-specific translation factor" +BW25113_3590__5prime selB__5prime 0 3753222 3753419 -1 667 0.16666666666666666 198 33 "selenocysteinyl-tRNA-specific translation factor" +BW25113_3590__3prime selB__3prime 0 3751179 3751376 -1 1141 0.17676767676767677 198 35 "selenocysteinyl-tRNA-specific translation factor" +BW25113_3591 selA 0 3753218 3754609 -1 5064 0.13793103448275862 1392 192 "selenocysteine synthase" +BW25113_3591__5prime selA__5prime 0 3754610 3754807 -1 764 0.18686868686868688 198 37 "selenocysteine synthase" +BW25113_3591__3prime selA__3prime 0 3753020 3753217 -1 166 0.050505050505050504 198 10 "selenocysteine synthase" +BW25113_3592 yibF 0 3754707 3755315 -1 1820 0.13957307060755336 609 85 "glutathione S-transferase homolog" +BW25113_3592__5prime yibF__5prime 0 3755316 3755513 -1 195 0.07575757575757576 198 15 "glutathione S-transferase homolog" +BW25113_3592__3prime yibF__3prime 0 3754509 3754706 -1 1085 0.1717171717171717 198 34 "glutathione S-transferase homolog" +BW25113_3593 rhsA 0 3755543 3759676 1 22422 0.251088534107402 4134 1038 "Rhs family protein and putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor" +BW25113_3593__5prime rhsA__5prime 0 3755345 3755542 1 175 0.06060606060606061 198 12 "Rhs family protein and putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor" +BW25113_3593__3prime rhsA__3prime 0 3759677 3759874 1 2667 0.2777777777777778 198 55 "Rhs family protein and putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor" +BW25113_3594 yibA 0 3759697 3760539 1 5404 0.23606168446026096 843 199 "HEAT-domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA" +BW25113_3594__5prime yibA__5prime 0 3759499 3759696 1 2522 0.4393939393939394 198 87 "HEAT-domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA" +BW25113_3594__3prime yibA__3prime 0 3760540 3760737 1 3054 0.3888888888888889 198 77 "HEAT-domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA" +BW25113_3595 rhsJ 0 3760581 3761525 1 18004 0.44656084656084655 945 422 "3760580_3761525" +BW25113_3595__5prime rhsJ__5prime 0 3760383 3760580 1 3368 0.47474747474747475 198 94 "3760580_3761525" +BW25113_3595__3prime rhsJ__3prime 0 3761526 3761723 1 2513 0.29797979797979796 198 59 "3760580_3761525" +BW25113_3596 yibG 0 3761537 3761998 1 3686 0.22294372294372294 462 103 "TPR-like repeat protein" +BW25113_3596__5prime yibG__5prime 0 3761339 3761536 1 3052 0.4595959595959596 198 91 "TPR-like repeat protein" +BW25113_3596__3prime yibG__3prime 0 3761999 3762196 1 12086 0.6464646464646465 198 128 "TPR-like repeat protein" +BW25113_4650 yibS 0 3761999 3762250 1 13794 0.623015873015873 252 157 "3761998_3762250" +BW25113_4650__5prime yibS__5prime 0 3761801 3761998 1 1138 0.20202020202020202 198 40 "3761998_3762250" +BW25113_4650__3prime yibS__3prime 0 3762251 3762448 1 2652 0.35353535353535354 198 70 "3761998_3762250" +BW25113_4651 yibW 0 3762252 3762616 1 4271 0.29041095890410956 365 106 "3762251_3762616" +BW25113_4651__5prime yibW__5prime 0 3762054 3762251 1 9849 0.5656565656565656 198 112 "3762251_3762616" +BW25113_4651__3prime yibW__3prime 0 3762617 3762814 1 3848 0.35858585858585856 198 71 "3762251_3762616" +BW25113_4615 yibV 0 3762705 3763143 1 4879 0.24829157175398633 439 109 "3762704_3763143" +BW25113_4615__5prime yibV__5prime 0 3762507 3762704 1 922 0.15151515151515152 198 30 "3762704_3763143" +BW25113_4615__3prime yibV__3prime 0 3763144 3763341 1 228 0.09090909090909091 198 18 "3762704_3763143" +BW25113_4652 yibU 0 3763308 3763506 1 2524 0.36180904522613067 199 72 "3763307_3763506" +BW25113_4652__5prime yibU__5prime 0 3763110 3763307 1 131 0.045454545454545456 198 9 "3763307_3763506" +BW25113_4652__3prime yibU__3prime 0 3763507 3763704 1 783 0.1717171717171717 198 34 "3763307_3763506" +BW25113_3597 yibH 0 3763603 3764739 -1 6167 0.1820580474934037 1137 207 "putative membrane fusion protein (MFP) component of efflux pump" +BW25113_3597__5prime yibH__5prime 0 3764740 3764937 -1 646 0.16161616161616163 198 32 "putative membrane fusion protein (MFP) component of efflux pump" +BW25113_3597__3prime yibH__3prime 0 3763405 3763602 -1 1804 0.25252525252525254 198 50 "putative membrane fusion protein (MFP) component of efflux pump" +BW25113_3598 yibI 0 3764742 3765104 -1 1100 0.14600550964187328 363 53 "DUF3302 family inner membrane protein" +BW25113_3598__5prime yibI__5prime 0 3765105 3765302 -1 833 0.15656565656565657 198 31 "DUF3302 family inner membrane protein" +BW25113_3598__3prime yibI__3prime 0 3764544 3764741 -1 361 0.08585858585858586 198 17 "DUF3302 family inner membrane protein" +BW25113_3599 mtlA 0 3765641 3767554 1 8109 0.1671891327063741 1914 320 "fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components" +BW25113_3599__5prime mtlA__5prime 0 3765443 3765640 1 1022 0.18181818181818182 198 36 "fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components" +BW25113_3599__3prime mtlA__3prime 0 3767555 3767752 1 929 0.15656565656565657 198 31 "fused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components" +3767595_3767694 3767595_3767694 0 3767596 3767694 1 229 0.09090909090909091 99 9 "3767595_3767694" +3767595_3767694__5prime 3767595_3767694__5prime 0 3767398 3767595 1 1339 0.2777777777777778 198 55 "3767595_3767694" +3767595_3767694__3prime 3767595_3767694__3prime 0 3767695 3767892 1 937 0.15151515151515152 198 30 "3767595_3767694" +BW25113_3600 mtlD 0 3767784 3768932 1 5659 0.18624891209747607 1149 214 "mannitol-1-phosphate dehydrogenase and NAD-dependent" +BW25113_3600__5prime mtlD__5prime 0 3767586 3767783 1 1068 0.15151515151515152 198 30 "mannitol-1-phosphate dehydrogenase and NAD-dependent" +BW25113_3600__3prime mtlD__3prime 0 3768933 3769130 1 501 0.16666666666666666 198 33 "mannitol-1-phosphate dehydrogenase and NAD-dependent" +BW25113_3601 mtlR 0 3768932 3769519 1 1988 0.18027210884353742 588 106 "mannitol operon repressor" +BW25113_3601__5prime mtlR__5prime 0 3768734 3768931 1 1363 0.18686868686868688 198 37 "mannitol operon repressor" +BW25113_3601__3prime mtlR__3prime 0 3769520 3769717 1 1172 0.2474747474747475 198 49 "mannitol operon repressor" +BW25113_4554 yibT 0 3769531 3769740 -1 1137 0.23333333333333334 210 49 "uncharacterized protein" +BW25113_4554__5prime yibT__5prime 0 3769741 3769938 -1 250 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_4554__3prime yibT__3prime 0 3769333 3769530 -1 649 0.20202020202020202 198 40 "uncharacterized protein" +BW25113_3602 yibL 0 3770025 3770387 1 776 0.08539944903581267 363 31 "ribosome-associated DUF2810 family protein" +BW25113_3602__5prime yibL__5prime 0 3769827 3770024 1 307 0.050505050505050504 198 10 "ribosome-associated DUF2810 family protein" +BW25113_3602__3prime yibL__3prime 0 3770388 3770585 1 595 0.16161616161616163 198 32 "ribosome-associated DUF2810 family protein" +3770423_3770457 3770423_3770457 0 3770424 3770457 1 117 0.14705882352941177 34 5 "3770423_3770457" +3770423_3770457__5prime 3770423_3770457__5prime 0 3770226 3770423 1 724 0.15151515151515152 198 30 "3770423_3770457" +3770423_3770457__3prime 3770423_3770457__3prime 0 3770458 3770655 1 254 0.09595959595959595 198 19 "3770423_3770457" +BW25113_3603 lldP 0 3770759 3772414 1 9926 0.18055555555555555 1656 299 "L-lactate permease" +BW25113_3603__5prime lldP__5prime 0 3770561 3770758 1 822 0.16161616161616163 198 32 "L-lactate permease" +BW25113_3603__3prime lldP__3prime 0 3772415 3772612 1 321 0.10606060606060606 198 21 "L-lactate permease" +BW25113_3604 lldR 0 3772414 3773190 1 2240 0.11454311454311454 777 89 "dual role activator/repressor for lldPRD operon" +BW25113_3604__5prime lldR__5prime 0 3772216 3772413 1 832 0.1414141414141414 198 28 "dual role activator/repressor for lldPRD operon" +BW25113_3604__3prime lldR__3prime 0 3773191 3773388 1 346 0.12626262626262627 198 25 "dual role activator/repressor for lldPRD operon" +BW25113_3605 lldD 0 3773187 3774377 1 4284 0.1528127623845508 1191 182 "L-lactate dehydrogenase and FMN-linked" +BW25113_3605__5prime lldD__5prime 0 3772989 3773186 1 459 0.10101010101010101 198 20 "L-lactate dehydrogenase and FMN-linked" +BW25113_3605__3prime lldD__3prime 0 3774378 3774575 1 1628 0.25757575757575757 198 51 "L-lactate dehydrogenase and FMN-linked" +BW25113_3606 trmL 0 3774575 3775048 1 2496 0.1940928270042194 474 92 '"tRNA Leu mC34 and mU34 2''-O-methyltransferase and SAM-dependent"' +BW25113_3606__5prime trmL__5prime 0 3774377 3774574 1 1617 0.25252525252525254 198 50 '"tRNA Leu mC34 and mU34 2''-O-methyltransferase and SAM-dependent"' +BW25113_3606__3prime trmL__3prime 0 3775049 3775246 1 376 0.0707070707070707 198 14 '"tRNA Leu mC34 and mU34 2''-O-methyltransferase and SAM-dependent"' +3775057_3775086 3775057_3775086 0 3775058 3775086 1 43 0.10344827586206896 29 3 "3775057_3775086" +3775057_3775086__5prime 3775057_3775086__5prime 0 3774860 3775057 1 1446 0.26262626262626265 198 52 "3775057_3775086" +3775057_3775086__3prime 3775057_3775086__3prime 0 3775087 3775284 1 299 0.050505050505050504 198 10 "3775057_3775086" +BW25113_3607 cysE 0 3775101 3775922 -1 467 0.019464720194647202 822 16 "serine acetyltransferase" +BW25113_3607__5prime cysE__5prime 0 3775923 3776120 -1 692 0.16161616161616163 198 32 "serine acetyltransferase" +BW25113_3607__3prime cysE__3prime 0 3774903 3775100 -1 1358 0.25757575757575757 198 51 "serine acetyltransferase" +BW25113_3608 gpsA 0 3776002 3777021 -1 71 0.006862745098039216 1020 7 "glycerol-3-phosphate dehydrogenase (NAD+)" +BW25113_3608__5prime gpsA__5prime 0 3777022 3777219 -1 447 0.08585858585858586 198 17 "glycerol-3-phosphate dehydrogenase (NAD+)" +BW25113_3608__3prime gpsA__3prime 0 3775804 3776001 -1 858 0.1919191919191919 198 38 "glycerol-3-phosphate dehydrogenase (NAD+)" +BW25113_3609 secB 0 3777021 3777488 -1 558 0.05128205128205128 468 24 "protein export chaperone" +BW25113_3609__5prime secB__5prime 0 3777489 3777686 -1 1525 0.23737373737373738 198 47 "protein export chaperone" +BW25113_3609__3prime secB__3prime 0 3776823 3777020 -1 35 0.020202020202020204 198 4 "protein export chaperone" +BW25113_3610 grxC 0 3777551 3777802 -1 987 0.17857142857142858 252 45 "glutaredoxin 3" +BW25113_3610__5prime grxC__5prime 0 3777803 3778000 -1 364 0.08585858585858586 198 17 "glutaredoxin 3" +BW25113_3610__3prime grxC__3prime 0 3777353 3777550 -1 901 0.1111111111111111 198 22 "glutaredoxin 3" +BW25113_3611 yibN 0 3777944 3778375 -1 1552 0.18287037037037038 432 79 "putative rhodanese-related sulfurtransferase" +BW25113_3611__5prime yibN__5prime 0 3778376 3778573 -1 425 0.08585858585858586 198 17 "putative rhodanese-related sulfurtransferase" +BW25113_3611__3prime yibN__3prime 0 3777746 3777943 -1 429 0.10101010101010101 198 20 "putative rhodanese-related sulfurtransferase" +BW25113_3612 gpmM 0 3778620 3780164 1 7689 0.18705501618122977 1545 289 "phosphoglycero mutase III and cofactor-independent" +BW25113_3612__5prime gpmM__5prime 0 3778422 3778619 1 275 0.04040404040404041 198 8 "phosphoglycero mutase III and cofactor-independent" +BW25113_3612__3prime gpmM__3prime 0 3780165 3780362 1 266 0.09090909090909091 198 18 "phosphoglycero mutase III and cofactor-independent" +BW25113_3613 envC 0 3780198 3781457 1 3481 0.12063492063492064 1260 152 "activator of AmiB and C murein hydrolases and septal ring factor" +BW25113_3613__5prime envC__5prime 0 3780000 3780197 1 447 0.12626262626262627 198 25 "activator of AmiB and C murein hydrolases and septal ring factor" +BW25113_3613__3prime envC__3prime 0 3781458 3781655 1 438 0.08585858585858586 198 17 "activator of AmiB and C murein hydrolases and septal ring factor" +BW25113_3614 yibQ 0 3781461 3782420 1 4739 0.2125 960 204 "putative polysaccharide deacetylase" +BW25113_3614__5prime yibQ__5prime 0 3781263 3781460 1 578 0.12626262626262627 198 25 "putative polysaccharide deacetylase" +BW25113_3614__3prime yibQ__3prime 0 3782421 3782618 1 6157 0.5757575757575758 198 114 "putative polysaccharide deacetylase" +BW25113_3615 waaH 0 3782407 3783441 -1 23517 0.41642512077294686 1035 431 "LPS(HepIII)-glucuronic acid glycosyltransferase" +BW25113_3615__5prime waaH__5prime 0 3783442 3783639 -1 3804 0.3888888888888889 198 77 "LPS(HepIII)-glucuronic acid glycosyltransferase" +BW25113_3615__3prime waaH__3prime 0 3782209 3782406 -1 1503 0.37373737373737376 198 74 "LPS(HepIII)-glucuronic acid glycosyltransferase" +BW25113_3616 tdh 0 3783680 3784705 -1 5345 0.1861598440545809 1026 191 "L-threonine 3-dehydrogenase and NAD(P)-binding" +BW25113_3616__5prime tdh__5prime 0 3784706 3784903 -1 405 0.1111111111111111 198 22 "L-threonine 3-dehydrogenase and NAD(P)-binding" +BW25113_3616__3prime tdh__3prime 0 3783482 3783679 -1 3572 0.3787878787878788 198 75 "L-threonine 3-dehydrogenase and NAD(P)-binding" +BW25113_3617 kbl 0 3784715 3785911 -1 4353 0.17126148705096073 1197 205 "glycine C-acetyltransferase" +BW25113_3617__5prime kbl__5prime 0 3785912 3786109 -1 1318 0.19696969696969696 198 39 "glycine C-acetyltransferase" +BW25113_3617__3prime kbl__3prime 0 3784517 3784714 -1 462 0.13636363636363635 198 27 "glycine C-acetyltransferase" +BW25113_3618 yibB 0 3786186 3787043 -1 7456 0.23892773892773891 858 205 "YibB family protein and function unknown" +BW25113_3618__5prime yibB__5prime 0 3787044 3787241 -1 1423 0.23737373737373738 198 47 "YibB family protein and function unknown" +BW25113_3618__3prime yibB__3prime 0 3785988 3786185 -1 500 0.11616161616161616 198 23 "YibB family protein and function unknown" +BW25113_3619 hldD 0 3787347 3788279 1 1340 0.10718113612004287 933 100 "ADP-L-glycero-D-mannoheptose-6-epimerase and NAD(P)-binding" +BW25113_3619__5prime hldD__5prime 0 3787149 3787346 1 3550 0.47474747474747475 198 94 "ADP-L-glycero-D-mannoheptose-6-epimerase and NAD(P)-binding" +BW25113_3619__3prime hldD__3prime 0 3788280 3788477 1 386 0.09090909090909091 198 18 "ADP-L-glycero-D-mannoheptose-6-epimerase and NAD(P)-binding" +BW25113_3620 waaF 0 3788289 3789335 1 2133 0.10792741165234002 1047 113 "ADP-heptose:LPS heptosyltransferase II" +BW25113_3620__5prime waaF__5prime 0 3788091 3788288 1 568 0.17676767676767677 198 35 "ADP-heptose:LPS heptosyltransferase II" +BW25113_3620__3prime waaF__3prime 0 3789336 3789533 1 309 0.08585858585858586 198 17 "ADP-heptose:LPS heptosyltransferase II" +BW25113_3621 waaC 0 3789339 3790298 1 4019 0.17291666666666666 960 166 "ADP-heptose:LPS heptosyl transferase I" +BW25113_3621__5prime waaC__5prime 0 3789141 3789338 1 210 0.09595959595959595 198 19 "ADP-heptose:LPS heptosyl transferase I" +BW25113_3621__3prime waaC__3prime 0 3790299 3790496 1 366 0.11616161616161616 198 23 "ADP-heptose:LPS heptosyl transferase I" +BW25113_3622 waaL 0 3790308 3791567 1 11295 0.24126984126984127 1260 304 "O-antigen ligase" +BW25113_3622__5prime waaL__5prime 0 3790110 3790307 1 2171 0.3686868686868687 198 73 "O-antigen ligase" +BW25113_3622__3prime waaL__3prime 0 3791568 3791765 1 670 0.21212121212121213 198 42 "O-antigen ligase" +BW25113_3623 waaU 0 3791599 3792672 -1 7328 0.2085661080074488 1074 224 "lipopolysaccharide core biosynthesis" +BW25113_3623__5prime waaU__5prime 0 3792673 3792870 -1 527 0.10101010101010101 198 20 "lipopolysaccharide core biosynthesis" +BW25113_3623__3prime waaU__3prime 0 3791401 3791598 -1 2106 0.32323232323232326 198 64 "lipopolysaccharide core biosynthesis" +BW25113_3624 waaZ 0 3792705 3793556 -1 6718 0.2312206572769953 852 197 "lipopolysaccharide core biosynthesis protein" +BW25113_3624__5prime waaZ__5prime 0 3793557 3793754 -1 1079 0.20202020202020202 198 40 "lipopolysaccharide core biosynthesis protein" +BW25113_3624__3prime waaZ__3prime 0 3792507 3792704 -1 128 0.045454545454545456 198 9 "lipopolysaccharide core biosynthesis protein" +BW25113_3625 waaY 0 3793627 3794325 -1 7142 0.296137339055794 699 207 "lipopolysaccharide core biosynthesis protein" +BW25113_3625__5prime waaY__5prime 0 3794326 3794523 -1 216 0.08080808080808081 198 16 "lipopolysaccharide core biosynthesis protein" +BW25113_3625__3prime waaY__3prime 0 3793429 3793626 -1 712 0.12626262626262627 198 25 "lipopolysaccharide core biosynthesis protein" +BW25113_3626 waaJ 0 3794343 3795359 -1 14625 0.27728613569321536 1017 282 "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase" +BW25113_3626__5prime waaJ__5prime 0 3795360 3795557 -1 1987 0.20707070707070707 198 41 "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase" +BW25113_3626__3prime waaJ__3prime 0 3794145 3794342 -1 607 0.1717171717171717 198 34 "UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase" +BW25113_3627 waaR 0 3795399 3796418 -1 9729 0.24411764705882352 1020 249 "UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1 and 3-D-galactosyltransferase" +BW25113_3627__5prime waaR__5prime 0 3796419 3796616 -1 1031 0.15151515151515152 198 30 "UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1 and 3-D-galactosyltransferase" +BW25113_3627__3prime waaR__3prime 0 3795201 3795398 -1 2657 0.3383838383838384 198 67 "UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1 and 3-D-galactosyltransferase" +BW25113_3628 waaB 0 3796418 3797497 -1 14153 0.3055555555555556 1080 330 "UDP-D-galactose:(glucosyl)lipopolysaccharide-1 and 6-D-galactosyltransferase" +BW25113_3628__5prime waaB__5prime 0 3797498 3797695 -1 277 0.09595959595959595 198 19 "UDP-D-galactose:(glucosyl)lipopolysaccharide-1 and 6-D-galactosyltransferase" +BW25113_3628__3prime waaB__3prime 0 3796220 3796417 -1 202 0.030303030303030304 198 6 "UDP-D-galactose:(glucosyl)lipopolysaccharide-1 and 6-D-galactosyltransferase" +BW25113_3629 waaS 0 3797541 3798476 -1 1686 0.09188034188034189 936 86 "lipopolysaccharide core biosynthesis protein" +BW25113_3629__5prime waaS__5prime 0 3798477 3798674 -1 1422 0.18686868686868688 198 37 "lipopolysaccharide core biosynthesis protein" +BW25113_3629__3prime waaS__3prime 0 3797343 3797540 -1 1877 0.25252525252525254 198 50 "lipopolysaccharide core biosynthesis protein" +BW25113_3630 waaP 0 3798513 3799310 -1 10928 0.36215538847117795 798 289 "kinase that phosphorylates core heptose of lipopolysaccharide" +BW25113_3630__5prime waaP__5prime 0 3799311 3799508 -1 4985 0.5151515151515151 198 102 "kinase that phosphorylates core heptose of lipopolysaccharide" +BW25113_3630__3prime waaP__3prime 0 3798315 3798512 -1 325 0.050505050505050504 198 10 "kinase that phosphorylates core heptose of lipopolysaccharide" +BW25113_3631 waaG 0 3799303 3800427 -1 20706 0.33866666666666667 1125 381 "glucosyltransferase I" +BW25113_3631__5prime waaG__5prime 0 3800428 3800625 -1 2003 0.32323232323232326 198 64 "glucosyltransferase I" +BW25113_3631__3prime waaG__3prime 0 3799105 3799302 -1 2252 0.3484848484848485 198 69 "glucosyltransferase I" +BW25113_3632 waaQ 0 3800424 3801458 -1 30302 0.3961352657004831 1035 410 "lipopolysaccharide core biosynthesis protein" +BW25113_3632__5prime waaQ__5prime 0 3801459 3801656 -1 1119 0.23232323232323232 198 46 "lipopolysaccharide core biosynthesis protein" +BW25113_3632__3prime waaQ__3prime 0 3800226 3800423 -1 6376 0.4494949494949495 198 89 "lipopolysaccharide core biosynthesis protein" +BW25113_3633 waaA 0 3801900 3803177 1 57 0.003912363067292645 1278 5 "3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)" +BW25113_3633__5prime waaA__5prime 0 3801702 3801899 1 128 0.06565656565656566 198 13 "3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)" +BW25113_3633__3prime waaA__3prime 0 3803178 3803375 1 62 0.010101010101010102 198 2 "3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)" +BW25113_3634 coaD 0 3803185 3803664 1 92 0.010416666666666666 480 5 "pantetheine-phosphate adenylyltransferase" +BW25113_3634__5prime coaD__5prime 0 3802987 3803184 1 28 0.015151515151515152 198 3 "pantetheine-phosphate adenylyltransferase" +BW25113_3634__3prime coaD__3prime 0 3803665 3803862 1 251 0.05555555555555555 198 11 "pantetheine-phosphate adenylyltransferase" +3803671_3803693 3803671_3803693 0 3803672 3803693 1 50 0.13636363636363635 22 3 "3803671_3803693" +3803671_3803693__5prime 3803671_3803693__5prime 0 3803474 3803671 1 30 0.015151515151515152 198 3 "3803671_3803693" +3803671_3803693__3prime 3803671_3803693__3prime 0 3803694 3803891 1 625 0.08080808080808081 198 16 "3803671_3803693" +BW25113_3635 mutM 0 3803703 3804512 -1 3619 0.15925925925925927 810 129 "formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase" +BW25113_3635__5prime mutM__5prime 0 3804513 3804710 -1 271 0.08585858585858586 198 17 "formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase" +BW25113_3635__3prime mutM__3prime 0 3803505 3803702 -1 80 0.030303030303030304 198 6 "formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase" +BW25113_3636 rpmG 0 3804610 3804777 -1 36 0.005952380952380952 168 1 "50S ribosomal subunit protein L33" +BW25113_3636__5prime rpmG__5prime 0 3804778 3804975 -1 0 0.0 198 0 "50S ribosomal subunit protein L33" +BW25113_3636__3prime rpmG__3prime 0 3804412 3804609 -1 835 0.2474747474747475 198 49 "50S ribosomal subunit protein L33" +BW25113_3637 rpmB 0 3804798 3805034 -1 0 0.0 237 0 "50S ribosomal subunit protein L28" +BW25113_3637__5prime rpmB__5prime 0 3805035 3805232 -1 97 0.025252525252525252 198 5 "50S ribosomal subunit protein L28" +BW25113_3637__3prime rpmB__3prime 0 3804600 3804797 -1 36 0.005050505050505051 198 1 "50S ribosomal subunit protein L28" +BW25113_3638 yicR 0 3805251 3805919 -1 2792 0.17488789237668162 669 117 "UPF0758 family protein" +BW25113_3638__5prime yicR__5prime 0 3805920 3806117 -1 505 0.0707070707070707 198 14 "UPF0758 family protein" +BW25113_3638__3prime yicR__3prime 0 3805053 3805250 -1 229 0.03535353535353535 198 7 "UPF0758 family protein" +BW25113_3639 dfp 0 3806091 3807311 1 27 0.002457002457002457 1221 3 '"fused 4''-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase and FMN-binding"' +BW25113_3639__5prime dfp__5prime 0 3805893 3806090 1 635 0.08585858585858586 198 17 '"fused 4''-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase and FMN-binding"' +BW25113_3639__3prime dfp__3prime 0 3807312 3807509 1 0 0.0 198 0 '"fused 4''-phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase and FMN-binding"' +BW25113_3640 dut 0 3807292 3807747 1 0 0.0 456 0 "deoxyuridinetriphosphatase" +BW25113_3640__5prime dut__5prime 0 3807094 3807291 1 27 0.015151515151515152 198 3 "deoxyuridinetriphosphatase" +BW25113_3640__3prime dut__3prime 0 3807748 3807945 1 746 0.12121212121212122 198 24 "deoxyuridinetriphosphatase" +BW25113_3641 slmA 0 3807854 3808450 1 2334 0.1474036850921273 597 88 "nucleoid occlusion factor and anti-FtsZ division inhibitor" +BW25113_3641__5prime slmA__5prime 0 3807656 3807853 1 358 0.06060606060606061 198 12 "nucleoid occlusion factor and anti-FtsZ division inhibitor" +BW25113_3641__3prime slmA__3prime 0 3808451 3808648 1 282 0.09595959595959595 198 19 "nucleoid occlusion factor and anti-FtsZ division inhibitor" +3808456_3808478 3808456_3808478 0 3808457 3808478 1 0 0.0 22 0 "3808456_3808478" +3808456_3808478__5prime 3808456_3808478__5prime 0 3808259 3808456 1 532 0.13636363636363635 198 27 "3808456_3808478" +3808456_3808478__3prime 3808456_3808478__3prime 0 3808479 3808676 1 429 0.12121212121212122 198 24 "3808456_3808478" +BW25113_3642 pyrE 0 3808487 3809128 -1 1583 0.11526479750778816 642 74 "orotate phosphoribosyltransferase" +BW25113_3642__5prime pyrE__5prime 0 3809129 3809326 -1 814 0.17676767676767677 198 35 "orotate phosphoribosyltransferase" +BW25113_3642__3prime pyrE__3prime 0 3808289 3808486 -1 471 0.11616161616161616 198 23 "orotate phosphoribosyltransferase" +BW25113_3643 rph 0 3809194 3809909 -1 3814 0.19972067039106145 716 143 "3809193_3809909" +BW25113_3643__5prime rph__5prime 0 3809910 3810107 -1 986 0.15656565656565657 198 31 "3809193_3809909" +BW25113_3643__3prime rph__3prime 0 3808996 3809193 -1 523 0.0707070707070707 198 14 "3809193_3809909" +3809690_3810015 3809690_3810015 0 3809691 3810015 1 1705 0.16923076923076924 325 55 "3809690_3810015" +3809690_3810015__5prime 3809690_3810015__5prime 0 3809493 3809690 1 1216 0.2222222222222222 198 44 "3809690_3810015" +3809690_3810015__3prime 3809690_3810015__3prime 0 3810016 3810213 1 1289 0.20707070707070707 198 41 "3809690_3810015" +BW25113_3644 yicC 0 3810036 3810899 1 2704 0.125 864 108 "UPF0701 family protein" +BW25113_3644__5prime yicC__5prime 0 3809838 3810035 1 644 0.09595959595959595 198 19 "UPF0701 family protein" +BW25113_3644__3prime yicC__3prime 0 3810900 3811097 1 185 0.050505050505050504 198 10 "UPF0701 family protein" +BW25113_3645 dinD 0 3811120 3811944 1 4336 0.22424242424242424 825 185 "DNA damage-inducible protein" +BW25113_3645__5prime dinD__5prime 0 3810922 3811119 1 310 0.07575757575757576 198 15 "DNA damage-inducible protein" +BW25113_3645__3prime dinD__3prime 0 3811945 3812142 1 708 0.15151515151515152 198 30 "DNA damage-inducible protein" +BW25113_3646 yicG 0 3812234 3812851 1 4126 0.25728155339805825 618 159 "UPF0126 family inner membrane protein" +BW25113_3646__5prime yicG__5prime 0 3812036 3812233 1 154 0.05555555555555555 198 11 "UPF0126 family inner membrane protein" +BW25113_3646__3prime yicG__3prime 0 3812852 3813049 1 1122 0.23737373737373738 198 47 "UPF0126 family inner membrane protein" +BW25113_3647 ligB 0 3812848 3814530 -1 6921 0.19726678550207963 1683 332 "DNA ligase and NAD(+)-dependent" +BW25113_3647__5prime ligB__5prime 0 3814531 3814728 -1 538 0.15151515151515152 198 30 "DNA ligase and NAD(+)-dependent" +BW25113_3647__3prime ligB__3prime 0 3812650 3812847 -1 1189 0.2878787878787879 198 57 "DNA ligase and NAD(+)-dependent" +BW25113_3648 gmk 0 3814788 3815411 1 0 0.0 624 0 "guanylate kinase" +BW25113_3648__5prime gmk__5prime 0 3814590 3814787 1 264 0.08080808080808081 198 16 "guanylate kinase" +BW25113_3648__3prime gmk__3prime 0 3815412 3815609 1 480 0.15151515151515152 198 30 "guanylate kinase" +BW25113_3649 rpoZ 0 3815466 3815741 1 538 0.12318840579710146 276 34 "RNA polymerase and omega subunit" +BW25113_3649__5prime rpoZ__5prime 0 3815268 3815465 1 16 0.010101010101010102 198 2 "RNA polymerase and omega subunit" +BW25113_3649__3prime rpoZ__3prime 0 3815742 3815939 1 118 0.030303030303030304 198 6 "RNA polymerase and omega subunit" +BW25113_3650 spoT 0 3815760 3817868 1 2039 0.0559506875296349 2109 118 '"bifunctional (p)ppGpp synthetase II/ guanosine-3'' and 5''-bis pyrophosphate 3''-pyrophosphohydrolase"' +BW25113_3650__5prime spoT__5prime 0 3815562 3815759 1 147 0.05555555555555555 198 11 '"bifunctional (p)ppGpp synthetase II/ guanosine-3'' and 5''-bis pyrophosphate 3''-pyrophosphohydrolase"' +BW25113_3650__3prime spoT__3prime 0 3817869 3818066 1 790 0.1919191919191919 198 38 '"bifunctional (p)ppGpp synthetase II/ guanosine-3'' and 5''-bis pyrophosphate 3''-pyrophosphohydrolase"' +BW25113_3651 trmH 0 3817875 3818564 1 3563 0.22318840579710145 690 154 '"tRNA mG18-2''-O-methyltransferase and SAM-dependent"' +BW25113_3651__5prime trmH__5prime 0 3817677 3817874 1 357 0.13131313131313133 198 26 '"tRNA mG18-2''-O-methyltransferase and SAM-dependent"' +BW25113_3651__3prime trmH__3prime 0 3818565 3818762 1 1619 0.2828282828282828 198 56 '"tRNA mG18-2''-O-methyltransferase and SAM-dependent"' +BW25113_3652 recG 0 3818570 3820651 1 6200 0.15129682997118155 2082 315 "ATP-dependent DNA helicase" +BW25113_3652__5prime recG__5prime 0 3818372 3818569 1 1013 0.21212121212121213 198 42 "ATP-dependent DNA helicase" +BW25113_3652__3prime recG__3prime 0 3820652 3820849 1 318 0.12626262626262627 198 25 "ATP-dependent DNA helicase" +BW25113_3652 recG 0 3819426 3819585 1 229 0.08125 160 13 "3819425_3819585" +BW25113_3652__5prime recG__5prime 0 3819228 3819425 1 454 0.12121212121212122 198 24 "3819425_3819585" +BW25113_3652__3prime recG__3prime 0 3819586 3819783 1 1042 0.23737373737373738 198 47 "3819425_3819585" +3820697_3820776 3820697_3820776 0 3820698 3820776 1 137 0.13924050632911392 79 11 "3820697_3820776" +3820697_3820776__5prime 3820697_3820776__5prime 0 3820500 3820697 1 372 0.14646464646464646 198 29 "3820697_3820776" +3820697_3820776__3prime 3820697_3820776__3prime 0 3820777 3820974 1 268 0.045454545454545456 198 9 "3820697_3820776" +BW25113_3653 gltS 0 3820820 3822025 -1 4222 0.1351575456053068 1206 163 "glutamate transporter" +BW25113_3653__5prime gltS__5prime 0 3822026 3822223 -1 499 0.1111111111111111 198 22 "glutamate transporter" +BW25113_3653__3prime gltS__3prime 0 3820622 3820819 -1 371 0.16161616161616163 198 32 "glutamate transporter" +BW25113_3654 xanP 0 3822305 3823696 1 6067 0.14870689655172414 1392 207 "xanthine permease" +BW25113_3654__5prime xanP__5prime 0 3822107 3822304 1 113 0.015151515151515152 198 3 "xanthine permease" +BW25113_3654__3prime xanP__3prime 0 3823697 3823894 1 181 0.09090909090909091 198 18 "xanthine permease" +BW25113_3655 yicH 0 3823817 3825526 1 8008 0.18128654970760233 1710 310 "putative inner membrane-anchored periplasmic AsmA family protein" +BW25113_3655__5prime yicH__5prime 0 3823619 3823816 1 267 0.09090909090909091 198 18 "putative inner membrane-anchored periplasmic AsmA family protein" +BW25113_3655__3prime yicH__3prime 0 3825527 3825724 1 1403 0.26262626262626265 198 52 "putative inner membrane-anchored periplasmic AsmA family protein" +3825537_3825564 3825537_3825564 0 3825538 3825564 1 287 0.37037037037037035 27 10 "3825537_3825564" +3825537_3825564__5prime 3825537_3825564__5prime 0 3825340 3825537 1 769 0.1717171717171717 198 34 "3825537_3825564" +3825537_3825564__3prime 3825537_3825564__3prime 0 3825565 3825762 1 1199 0.21717171717171718 198 43 "3825537_3825564" +BW25113_3656 yicI 0 3825579 3827897 -1 9813 0.17464424320827943 2319 405 "putative alpha-glucosidase" +BW25113_3656__5prime yicI__5prime 0 3827898 3828095 -1 954 0.18686868686868688 198 37 "putative alpha-glucosidase" +BW25113_3656__3prime yicI__3prime 0 3825381 3825578 -1 979 0.23737373737373738 198 47 "putative alpha-glucosidase" +BW25113_3657 yicJ 0 3827907 3829289 -1 7066 0.16847433116413593 1383 233 "putative transporter" +BW25113_3657__5prime yicJ__5prime 0 3829290 3829487 -1 907 0.16666666666666666 198 33 "putative transporter" +BW25113_3657__3prime yicJ__3prime 0 3827709 3827906 -1 1484 0.21212121212121213 198 42 "putative transporter" +BW25113_3658 selC 0 3829582 3829676 1 599 0.2 95 19 "tRNA-Sec" +BW25113_3658__5prime selC__5prime 0 3829384 3829581 1 666 0.20202020202020202 198 40 "tRNA-Sec" +BW25113_3658__3prime selC__3prime 0 3829677 3829874 1 1982 0.3181818181818182 198 63 "tRNA-Sec" +BW25113_4653 yicT 0 3829785 3829916 1 2216 0.4772727272727273 132 63 "3829784_3829916" +BW25113_4653__5prime yicT__5prime 0 3829587 3829784 1 1385 0.23232323232323232 198 46 "3829784_3829916" +BW25113_4653__3prime yicT__3prime 0 3829917 3830114 1 947 0.13636363636363635 198 27 "3829784_3829916" +BW25113_3659 setC 0 3830313 3831497 1 29246 0.5071729957805907 1185 601 "putative arabinose efflux transporter" +BW25113_3659__5prime setC__5prime 0 3830115 3830312 1 833 0.18686868686868688 198 37 "putative arabinose efflux transporter" +BW25113_3659__3prime setC__3prime 0 3831498 3831695 1 3100 0.3838383838383838 198 76 "putative arabinose efflux transporter" +BW25113_3660 yicL 0 3831608 3832531 1 16870 0.37337662337662336 924 345 "EamA family inner membrane putative transporter" +BW25113_3660__5prime yicL__5prime 0 3831410 3831607 1 4491 0.45454545454545453 198 90 "EamA family inner membrane putative transporter" +BW25113_3660__3prime yicL__3prime 0 3832532 3832729 1 2311 0.3282828282828283 198 65 "EamA family inner membrane putative transporter" +BW25113_3661 nlpA 0 3832535 3833353 -1 26725 0.47741147741147744 819 391 "cytoplasmic membrane lipoprotein-28" +BW25113_3661__5prime nlpA__5prime 0 3833354 3833551 -1 3638 0.4696969696969697 198 93 "cytoplasmic membrane lipoprotein-28" +BW25113_3661__3prime nlpA__3prime 0 3832337 3832534 -1 6510 0.43434343434343436 198 86 "cytoplasmic membrane lipoprotein-28" +BW25113_4555 yicS 0 3833575 3833868 1 6652 0.46598639455782315 294 137 "putative periplasmic protein" +BW25113_4555__5prime yicS__5prime 0 3833377 3833574 1 4042 0.5151515151515151 198 102 "putative periplasmic protein" +BW25113_4555__3prime yicS__3prime 0 3833869 3834066 1 4067 0.40404040404040403 198 80 "putative periplasmic protein" +BW25113_3662 nepI 0 3833909 3835099 -1 4900 0.14357682619647355 1191 171 "putative transporter" +BW25113_3662__5prime nepI__5prime 0 3835100 3835297 -1 729 0.14646464646464646 198 29 "putative transporter" +BW25113_3662__3prime nepI__3prime 0 3833711 3833908 -1 4512 0.4898989898989899 198 97 "putative transporter" +3835235_3835304 3835235_3835304 0 3835236 3835304 1 64 0.08695652173913043 69 6 "3835235_3835304" +3835235_3835304__5prime 3835235_3835304__5prime 0 3835038 3835235 1 726 0.12626262626262627 198 25 "3835235_3835304" +3835235_3835304__3prime 3835235_3835304__3prime 0 3835305 3835502 1 531 0.12121212121212122 198 24 "3835235_3835304" +BW25113_3663 yicN 0 3835310 3835762 -1 1187 0.11920529801324503 453 54 "DUF1198 family protein" +BW25113_3663__5prime yicN__5prime 0 3835763 3835960 -1 1708 0.3434343434343434 198 68 "DUF1198 family protein" +BW25113_3663__3prime yicN__3prime 0 3835112 3835309 -1 581 0.15151515151515152 198 30 "DUF1198 family protein" +BW25113_3664 yicO 0 3835815 3837149 -1 19080 0.4314606741573034 1335 576 "putative adenine permease" +BW25113_3664__5prime yicO__5prime 0 3837150 3837347 -1 361 0.1111111111111111 198 22 "putative adenine permease" +BW25113_3664__3prime yicO__3prime 0 3835617 3835814 -1 483 0.18181818181818182 198 36 "putative adenine permease" +BW25113_3665 ade 0 3837324 3839090 1 9529 0.1941143180531975 1767 343 "cryptic adenine deaminase" +BW25113_3665__5prime ade__5prime 0 3837126 3837323 1 503 0.15656565656565657 198 31 "cryptic adenine deaminase" +BW25113_3665__3prime ade__3prime 0 3839091 3839288 1 387 0.10606060606060606 198 21 "cryptic adenine deaminase" +BW25113_3666 uhpT 0 3839136 3840527 -1 3882 0.14367816091954022 1392 200 "hexose phosphate transporter" +BW25113_3666__5prime uhpT__5prime 0 3840528 3840725 -1 624 0.17676767676767677 198 35 "hexose phosphate transporter" +BW25113_3666__3prime uhpT__3prime 0 3838938 3839135 -1 323 0.08080808080808081 198 16 "hexose phosphate transporter" +BW25113_3667 uhpC 0 3840665 3841984 -1 3984 0.12954545454545455 1320 171 "membrane protein regulates uhpT expression" +BW25113_3667__5prime uhpC__5prime 0 3841985 3842182 -1 1122 0.25252525252525254 198 50 "membrane protein regulates uhpT expression" +BW25113_3667__3prime uhpC__3prime 0 3840467 3840664 -1 623 0.1414141414141414 198 28 "membrane protein regulates uhpT expression" +BW25113_3668 uhpB 0 3841994 3843496 -1 5229 0.17498336660013306 1503 263 "sensory histidine kinase in two-component regulatory sytem with UhpA" +BW25113_3668__5prime uhpB__5prime 0 3843497 3843694 -1 316 0.09090909090909091 198 18 "sensory histidine kinase in two-component regulatory sytem with UhpA" +BW25113_3668__3prime uhpB__3prime 0 3841796 3841993 -1 553 0.13131313131313133 198 26 "sensory histidine kinase in two-component regulatory sytem with UhpA" +BW25113_3669 uhpA 0 3843496 3844086 -1 2585 0.13874788494077833 591 82 "response regulator in two-component regulatory system wtih UhpB" +BW25113_3669__5prime uhpA__5prime 0 3844087 3844284 -1 412 0.0707070707070707 198 14 "response regulator in two-component regulatory system wtih UhpB" +BW25113_3669__3prime uhpA__3prime 0 3843298 3843495 -1 373 0.1111111111111111 198 22 "response regulator in two-component regulatory system wtih UhpB" +BW25113_3670 ilvN 0 3844162 3844452 -1 858 0.12371134020618557 291 36 "acetolactate synthase 1 small subunit" +BW25113_3670__5prime ilvN__5prime 0 3844453 3844650 -1 591 0.09595959595959595 198 19 "acetolactate synthase 1 small subunit" +BW25113_3670__3prime ilvN__3prime 0 3843964 3844161 -1 445 0.10101010101010101 198 20 "acetolactate synthase 1 small subunit" +BW25113_3671 ilvB 0 3844456 3846144 -1 7193 0.16222616933096506 1689 274 "acetolactate synthase 2 large subunit" +BW25113_3671__5prime ilvB__5prime 0 3846145 3846342 -1 506 0.1111111111111111 198 22 "acetolactate synthase 2 large subunit" +BW25113_3671__3prime ilvB__3prime 0 3844258 3844455 -1 768 0.1717171717171717 198 34 "acetolactate synthase 2 large subunit" +BW25113_3672 ivbL 0 3846250 3846348 -1 385 0.16161616161616163 99 16 "ilvB operon leader peptide" +BW25113_3672__5prime ivbL__5prime 0 3846349 3846546 -1 132 0.045454545454545456 198 9 "ilvB operon leader peptide" +BW25113_3672__3prime ivbL__3prime 0 3846052 3846249 -1 237 0.06565656565656566 198 13 "ilvB operon leader peptide" +BW25113_4616 istR 0 3846478 3846617 -1 31 0.02857142857142857 140 4 "sRNA antisense regulators IstR-1 and IstR-2 and affectr tisB and Hfq-dependent" +BW25113_4616__5prime istR__5prime 0 3846618 3846815 -1 602 0.16161616161616163 198 32 "sRNA antisense regulators IstR-1 and IstR-2 and affectr tisB and Hfq-dependent" +BW25113_4616__3prime istR__3prime 0 3846280 3846477 -1 343 0.08080808080808081 198 16 "sRNA antisense regulators IstR-1 and IstR-2 and affectr tisB and Hfq-dependent" +BW25113_4618 tisB 0 3846913 3847002 1 531 0.24444444444444444 90 22 "toxic membrane persister formation peptide and LexA-regulated" +BW25113_4618__5prime tisB__5prime 0 3846715 3846912 1 784 0.16666666666666666 198 33 "toxic membrane persister formation peptide and LexA-regulated" +BW25113_4618__3prime tisB__3prime 0 3847003 3847200 1 770 0.18686868686868688 198 37 "toxic membrane persister formation peptide and LexA-regulated" +3847071_3847107 3847071_3847107 0 3847072 3847107 1 199 0.2777777777777778 36 10 "3847071_3847107" +3847071_3847107__5prime 3847071_3847107__5prime 0 3846874 3847071 1 843 0.1919191919191919 198 38 "3847071_3847107" +3847071_3847107__3prime 3847071_3847107__3prime 0 3847108 3847305 1 355 0.08080808080808081 198 16 "3847071_3847107" +BW25113_3673 emrD 0 3847282 3848466 1 5141 0.1890295358649789 1185 224 "multidrug efflux system protein" +BW25113_3673__5prime emrD__5prime 0 3847084 3847281 1 455 0.1111111111111111 198 22 "multidrug efflux system protein" +BW25113_3673__3prime emrD__3prime 0 3848467 3848664 1 698 0.20707070707070707 198 41 "multidrug efflux system protein" +BW25113_3674 yidF 0 3848474 3848971 -1 1904 0.18072289156626506 498 90 "putative Cys-type oxidative YidJ-maturating enzyme" +BW25113_3674__5prime yidF__5prime 0 3848972 3849169 -1 741 0.10606060606060606 198 21 "putative Cys-type oxidative YidJ-maturating enzyme" +BW25113_3674__3prime yidF__3prime 0 3848276 3848473 -1 1210 0.2222222222222222 198 44 "putative Cys-type oxidative YidJ-maturating enzyme" +BW25113_3675 yidG 0 3848968 3849330 -1 1159 0.1184573002754821 363 43 "inner membrane protein" +BW25113_3675__5prime yidG__5prime 0 3849331 3849528 -1 642 0.17676767676767677 198 35 "inner membrane protein" +BW25113_3675__3prime yidG__3prime 0 3848770 3848967 -1 822 0.1919191919191919 198 38 "inner membrane protein" +BW25113_3676 yidH 0 3849320 3849667 -1 1006 0.15517241379310345 348 54 "DUF202 family inner membrane protein" +BW25113_3676__5prime yidH__5prime 0 3849668 3849865 -1 265 0.08585858585858586 198 17 "DUF202 family inner membrane protein" +BW25113_3676__3prime yidH__3prime 0 3849122 3849319 -1 484 0.12626262626262627 198 25 "DUF202 family inner membrane protein" +BW25113_3677 yidI 0 3849775 3850224 1 1043 0.06888888888888889 450 31 "inner membrane protein" +BW25113_3677__5prime yidI__5prime 0 3849577 3849774 1 432 0.1111111111111111 198 22 "inner membrane protein" +BW25113_3677__3prime yidI__3prime 0 3850225 3850422 1 767 0.15656565656565657 198 31 "inner membrane protein" +BW25113_3678 yidJ 0 3850271 3851764 -1 5299 0.14190093708165996 1494 212 "sulfatase/phosphatase superfamily protein" +BW25113_3678__5prime yidJ__5prime 0 3851765 3851962 -1 350 0.10606060606060606 198 21 "sulfatase/phosphatase superfamily protein" +BW25113_3678__3prime yidJ__3prime 0 3850073 3850270 -1 194 0.06060606060606061 198 12 "sulfatase/phosphatase superfamily protein" +BW25113_3679 yidK 0 3851761 3853476 -1 9783 0.21095571095571095 1716 362 "putative transporter" +BW25113_3679__5prime yidK__5prime 0 3853477 3853674 -1 2558 0.3838383838383838 198 76 "putative transporter" +BW25113_3679__3prime yidK__3prime 0 3851563 3851760 -1 1299 0.26262626262626265 198 52 "putative transporter" +BW25113_3680 yidL 0 3853643 3854536 1 18198 0.3724832214765101 894 333 "AraC family putative transcriptional regulator" +BW25113_3680__5prime yidL__5prime 0 3853445 3853642 1 2541 0.3939393939393939 198 78 "AraC family putative transcriptional regulator" +BW25113_3680__3prime yidL__3prime 0 3854537 3854734 1 890 0.2222222222222222 198 44 "AraC family putative transcriptional regulator" +BW25113_4556 glvG 0 3854533 3855347 -1 2022 0.1374233128834356 815 112 "3854532_3855347" +BW25113_4556__5prime glvG__5prime 0 3855348 3855545 -1 741 0.17676767676767677 198 35 "3854532_3855347" +BW25113_4556__3prime glvG__3prime 0 3854335 3854532 -1 898 0.23737373737373738 198 47 "3854532_3855347" +BW25113_3683 glvC 0 3855347 3856963 -1 6016 0.137291280148423 1617 222 "3855346_3856963" +BW25113_3683__5prime glvC__5prime 0 3856964 3857161 -1 749 0.15151515151515152 198 30 "3855346_3856963" +BW25113_3683__3prime glvC__3prime 0 3855149 3855346 -1 280 0.11616161616161616 198 23 "3855346_3856963" +BW25113_3684 yidP 0 3857259 3857975 1 1977 0.13389121338912133 717 96 "UTRA domain-containing GntR family putative transcriptional regulator" +BW25113_3684__5prime yidP__5prime 0 3857061 3857258 1 658 0.13131313131313133 198 26 "UTRA domain-containing GntR family putative transcriptional regulator" +BW25113_3684__3prime yidP__3prime 0 3857976 3858173 1 1140 0.23737373737373738 198 47 "UTRA domain-containing GntR family putative transcriptional regulator" +BW25113_3685 yidE 0 3857972 3859633 -1 7299 0.19494584837545126 1662 324 "putative transporter" +BW25113_3685__5prime yidE__5prime 0 3859634 3859831 -1 441 0.0707070707070707 198 14 "putative transporter" +BW25113_3685__3prime yidE__3prime 0 3857774 3857971 -1 937 0.22727272727272727 198 45 "putative transporter" +BW25113_3686 ibpB 0 3859829 3860257 -1 3146 0.20046620046620048 429 86 "heat shock chaperone" +BW25113_3686__5prime ibpB__5prime 0 3860258 3860455 -1 491 0.13636363636363635 198 27 "heat shock chaperone" +BW25113_3686__3prime ibpB__3prime 0 3859631 3859828 -1 447 0.07575757575757576 198 15 "heat shock chaperone" +BW25113_3687 ibpA 0 3860369 3860782 -1 1967 0.15217391304347827 414 63 "heat shock chaperone" +BW25113_3687__5prime ibpA__5prime 0 3860783 3860980 -1 1071 0.22727272727272727 198 45 "heat shock chaperone" +BW25113_3687__3prime ibpA__3prime 0 3860171 3860368 -1 767 0.20707070707070707 198 41 "heat shock chaperone" +BW25113_3688 yidQ 0 3861088 3861420 1 646 0.12312312312312312 333 41 "DUF1375 family outer membrane protein" +BW25113_3688__5prime yidQ__5prime 0 3860890 3861087 1 882 0.20707070707070707 198 41 "DUF1375 family outer membrane protein" +BW25113_3688__3prime yidQ__3prime 0 3861421 3861618 1 776 0.23737373737373738 198 47 "DUF1375 family outer membrane protein" +BW25113_3689 yidR 0 3861422 3862669 -1 6610 0.20592948717948717 1248 257 "DUF3748 family protein" +BW25113_3689__5prime yidR__5prime 0 3862670 3862867 -1 441 0.0707070707070707 198 14 "DUF3748 family protein" +BW25113_3689__3prime yidR__3prime 0 3861224 3861421 -1 346 0.10101010101010101 198 20 "DUF3748 family protein" +BW25113_3690 cbrA 0 3862737 3863801 1 3397 0.11737089201877934 1065 125 "colicin M resistance protein; FAD-binding protein and putative oxidoreductase" +BW25113_3690__5prime cbrA__5prime 0 3862539 3862736 1 1055 0.1919191919191919 198 38 "colicin M resistance protein; FAD-binding protein and putative oxidoreductase" +BW25113_3690__3prime cbrA__3prime 0 3863802 3863999 1 1699 0.21212121212121213 198 42 "colicin M resistance protein; FAD-binding protein and putative oxidoreductase" +BW25113_3691 dgoT 0 3863798 3865090 -1 6016 0.17788089713843774 1293 230 "D-galactonate transporter" +BW25113_3691__5prime dgoT__5prime 0 3865091 3865288 -1 1257 0.23737373737373738 198 47 "D-galactonate transporter" +BW25113_3691__3prime dgoT__3prime 0 3863600 3863797 -1 874 0.1919191919191919 198 38 "D-galactonate transporter" +BW25113_4478 dgoD 0 3865210 3866358 -1 5621 0.1888598781549173 1149 217 "galactonate dehydratase" +BW25113_4478__5prime dgoD__5prime 0 3866359 3866556 -1 1296 0.2222222222222222 198 44 "galactonate dehydratase" +BW25113_4478__3prime dgoD__3prime 0 3865012 3865209 -1 803 0.17676767676767677 198 35 "galactonate dehydratase" +BW25113_4477 dgoA 0 3866355 3866972 -1 2783 0.18770226537216828 618 116 "2-oxo-3-deoxygalactonate 6-phosphate aldolase" +BW25113_4477__5prime dgoA__5prime 0 3866973 3867170 -1 864 0.19696969696969696 198 39 "2-oxo-3-deoxygalactonate 6-phosphate aldolase" +BW25113_4477__3prime dgoA__3prime 0 3866157 3866354 -1 804 0.12121212121212122 198 24 "2-oxo-3-deoxygalactonate 6-phosphate aldolase" +BW25113_3693 dgoK 0 3866956 3867834 -1 3243 0.15017064846416384 879 132 "2-oxo-3-deoxygalactonate kinase" +BW25113_3693__5prime dgoK__5prime 0 3867835 3868032 -1 391 0.08080808080808081 198 16 "2-oxo-3-deoxygalactonate kinase" +BW25113_3693__3prime dgoK__3prime 0 3866758 3866955 -1 733 0.16161616161616163 198 32 "2-oxo-3-deoxygalactonate kinase" +BW25113_4479 dgoR 0 3867831 3868520 -1 2343 0.15942028985507245 690 110 "putative DNA-binding transcriptional regulator" +BW25113_4479__5prime dgoR__5prime 0 3868521 3868718 -1 974 0.15151515151515152 198 30 "putative DNA-binding transcriptional regulator" +BW25113_4479__3prime dgoR__3prime 0 3867633 3867830 -1 1153 0.19696969696969696 198 39 "putative DNA-binding transcriptional regulator" +BW25113_3696 yidX 0 3868798 3869454 1 3521 0.1993911719939117 657 131 "putative lipoprotein" +BW25113_3696__5prime yidX__5prime 0 3868600 3868797 1 151 0.05555555555555555 198 11 "putative lipoprotein" +BW25113_3696__3prime yidX__3prime 0 3869455 3869652 1 933 0.21717171717171718 198 43 "putative lipoprotein" +BW25113_3697 yidA 0 3869500 3870312 -1 4928 0.2656826568265683 813 216 "sugar phosphate phosphatase; substrates include erythrose 4-P and mannose 1-P phosphatase" +BW25113_3697__5prime yidA__5prime 0 3870313 3870510 -1 469 0.1414141414141414 198 28 "sugar phosphate phosphatase; substrates include erythrose 4-P and mannose 1-P phosphatase" +BW25113_3697__3prime yidA__3prime 0 3869302 3869499 -1 1699 0.29797979797979796 198 59 "sugar phosphate phosphatase; substrates include erythrose 4-P and mannose 1-P phosphatase" +BW25113_3698 yidB 0 3870427 3870825 -1 1622 0.17042606516290726 399 68 "DUF937 family protein" +BW25113_3698__5prime yidB__5prime 0 3870826 3871023 -1 325 0.10606060606060606 198 21 "DUF937 family protein" +BW25113_3698__3prime yidB__3prime 0 3870229 3870426 -1 511 0.1717171717171717 198 34 "DUF937 family protein" +3870945_3871043 3870945_3871043 0 3870946 3871043 1 134 0.08163265306122448 98 8 "3870945_3871043" +3870945_3871043__5prime 3870945_3871043__5prime 0 3870748 3870945 1 371 0.13131313131313133 198 26 "3870945_3871043" +3870945_3871043__3prime 3870945_3871043__3prime 0 3871044 3871241 1 167 0.04040404040404041 198 8 "3870945_3871043" +BW25113_3699 gyrB 0 3871065 3873479 -1 133 0.0037267080745341614 2415 9 "DNA gyrase and subunit B" +BW25113_3699__5prime gyrB__5prime 0 3873480 3873677 -1 248 0.06060606060606061 198 12 "DNA gyrase and subunit B" +BW25113_3699__3prime gyrB__3prime 0 3870867 3871064 -1 483 0.14646464646464646 198 29 "DNA gyrase and subunit B" +BW25113_3700 recF 0 3873508 3874581 -1 5182 0.14711359404096835 1074 158 "gap repair protein" +BW25113_3700__5prime recF__5prime 0 3874582 3874779 -1 43 0.020202020202020204 198 4 "gap repair protein" +BW25113_3700__3prime recF__3prime 0 3873310 3873507 -1 44 0.005050505050505051 198 1 "gap repair protein" +BW25113_3701 dnaN 0 3874581 3875681 -1 43 0.0036330608537693005 1101 4 "DNA polymerase III and beta subunit" +BW25113_3701__5prime dnaN__5prime 0 3875682 3875879 -1 0 0.0 198 0 "DNA polymerase III and beta subunit" +BW25113_3701__3prime dnaN__3prime 0 3874383 3874580 -1 640 0.13636363636363635 198 27 "DNA polymerase III and beta subunit" +BW25113_3702 dnaA 0 3875686 3877089 -1 0 0.0 1404 0 "chromosomal replication initiator protein DnaA and DNA-binding transcriptional dual regulator" +BW25113_3702__5prime dnaA__5prime 0 3877090 3877287 -1 307 0.025252525252525252 198 5 "chromosomal replication initiator protein DnaA and DNA-binding transcriptional dual regulator" +BW25113_3702__3prime dnaA__3prime 0 3875488 3875685 -1 0 0.0 198 0 "chromosomal replication initiator protein DnaA and DNA-binding transcriptional dual regulator" +BW25113_3703 rpmH 0 3877696 3877836 1 0 0.0 141 0 "50S ribosomal subunit protein L34" +BW25113_3703__5prime rpmH__5prime 0 3877498 3877695 1 169 0.025252525252525252 198 5 "50S ribosomal subunit protein L34" +BW25113_3703__3prime rpmH__3prime 0 3877837 3878034 1 0 0.0 198 0 "50S ribosomal subunit protein L34" +BW25113_3704 rnpA 0 3877853 3878212 1 64 0.013888888888888888 360 5 "protein C5 component of RNase P" +BW25113_3704__5prime rnpA__5prime 0 3877655 3877852 1 0 0.0 198 0 "protein C5 component of RNase P" +BW25113_3704__3prime rnpA__3prime 0 3878213 3878410 1 1200 0.1717171717171717 198 34 "protein C5 component of RNase P" +BW25113_4557 yidD 0 3878176 3878433 1 1311 0.16666666666666666 258 43 "membrane protein insertion efficiency factor and inner membrane protein and UPF0161 family" +BW25113_4557__5prime yidD__5prime 0 3877978 3878175 1 0 0.0 198 0 "membrane protein insertion efficiency factor and inner membrane protein and UPF0161 family" +BW25113_4557__3prime yidD__3prime 0 3878434 3878631 1 0 0.0 198 0 "membrane protein insertion efficiency factor and inner membrane protein and UPF0161 family" +BW25113_3705 yidC 0 3878436 3880082 1 0 0.0 1647 0 "membrane protein insertase" +BW25113_3705__5prime yidC__5prime 0 3878238 3878435 1 1148 0.16666666666666666 198 33 "membrane protein insertase" +BW25113_3705__3prime yidC__3prime 0 3880083 3880280 1 294 0.10101010101010101 198 20 "membrane protein insertase" +3880137_3880166 3880137_3880166 0 3880138 3880166 1 86 0.1724137931034483 29 5 "3880137_3880166" +3880137_3880166__5prime 3880137_3880166__5prime 0 3879940 3880137 1 48 0.020202020202020204 198 4 "3880137_3880166" +3880137_3880166__3prime 3880137_3880166__3prime 0 3880167 3880364 1 321 0.12121212121212122 198 24 "3880137_3880166" +BW25113_3706 mnmE 0 3880188 3881552 1 2869 0.12747252747252746 1365 174 "tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase" +BW25113_3706__5prime mnmE__5prime 0 3879990 3880187 1 158 0.050505050505050504 198 10 "tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase" +BW25113_3706__3prime mnmE__3prime 0 3881553 3881750 1 2163 0.3333333333333333 198 66 "tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase" +BW25113_3707 tnaC 0 3881795 3881869 1 671 0.38666666666666666 75 29 "tryptophanase leader peptide" +BW25113_3707__5prime tnaC__5prime 0 3881597 3881794 1 1823 0.2777777777777778 198 55 "tryptophanase leader peptide" +BW25113_3707__3prime tnaC__3prime 0 3881870 3882067 1 2550 0.2474747474747475 198 49 "tryptophanase leader peptide" +BW25113_3708 tnaA 0 3882090 3883505 1 24026 0.4067796610169492 1416 576 "tryptophanase/L-cysteine desulfhydrase and PLP-dependent" +BW25113_3708__5prime tnaA__5prime 0 3881892 3882089 1 958 0.16666666666666666 198 33 "tryptophanase/L-cysteine desulfhydrase and PLP-dependent" +BW25113_3708__3prime tnaA__3prime 0 3883506 3883703 1 10462 0.6212121212121212 198 123 "tryptophanase/L-cysteine desulfhydrase and PLP-dependent" +BW25113_3709 tnaB 0 3883596 3884843 1 24949 0.3421474358974359 1248 427 "tryptophan transporter of low affinity" +BW25113_3709__5prime tnaB__5prime 0 3883398 3883595 1 6593 0.5151515151515151 198 102 "tryptophan transporter of low affinity" +BW25113_3709__3prime tnaB__3prime 0 3884844 3885041 1 771 0.11616161616161616 198 23 "tryptophan transporter of low affinity" +BW25113_3710 mdtL 0 3884975 3886150 1 3791 0.13860544217687074 1176 163 "multidrug efflux system protein" +BW25113_3710__5prime mdtL__5prime 0 3884777 3884974 1 664 0.09090909090909091 198 18 "multidrug efflux system protein" +BW25113_3710__3prime mdtL__3prime 0 3886151 3886348 1 804 0.1414141414141414 198 28 "multidrug efflux system protein" +BW25113_3711 yidZ 0 3886125 3887084 1 3240 0.16354166666666667 960 157 "putative DNA-binding transcriptional regulator" +BW25113_3711__5prime yidZ__5prime 0 3885927 3886124 1 860 0.19696969696969696 198 39 "putative DNA-binding transcriptional regulator" +BW25113_3711__3prime yidZ__3prime 0 3887085 3887282 1 241 0.050505050505050504 198 10 "putative DNA-binding transcriptional regulator" +BW25113_3712 yieE 0 3887241 3887990 1 2512 0.144 750 108 "phosphopantetheinyl transferase superfamily protein" +BW25113_3712__5prime yieE__5prime 0 3887043 3887240 1 268 0.030303030303030304 198 6 "phosphopantetheinyl transferase superfamily protein" +BW25113_3712__3prime yieE__3prime 0 3887991 3888188 1 812 0.16161616161616163 198 32 "phosphopantetheinyl transferase superfamily protein" +BW25113_3713 chrR 0 3888012 3888578 1 1842 0.12874779541446207 567 73 "chromate reductase and Class I and flavoprotein" +BW25113_3713__5prime chrR__5prime 0 3887814 3888011 1 838 0.20202020202020202 198 40 "chromate reductase and Class I and flavoprotein" +BW25113_3713__3prime chrR__3prime 0 3888579 3888776 1 1018 0.12121212121212122 198 24 "chromate reductase and Class I and flavoprotein" +BW25113_3714 purP 0 3888632 3889969 -1 5802 0.17339312406576982 1338 232 "adenine permease and high affinity; adenine:H+ symporter" +BW25113_3714__5prime purP__5prime 0 3889970 3890167 -1 102 0.06060606060606061 198 12 "adenine permease and high affinity; adenine:H+ symporter" +BW25113_3714__3prime purP__3prime 0 3888434 3888631 -1 415 0.07575757575757576 198 15 "adenine permease and high affinity; adenine:H+ symporter" +BW25113_3715 yieH 0 3890134 3890799 1 4864 0.24474474474474475 666 163 "phosphoenolpyruvate and 6-phosphogluconate phosphatase" +BW25113_3715__5prime yieH__5prime 0 3889936 3890133 1 209 0.08080808080808081 198 16 "phosphoenolpyruvate and 6-phosphogluconate phosphatase" +BW25113_3715__3prime yieH__3prime 0 3890800 3890997 1 1701 0.2878787878787879 198 57 "phosphoenolpyruvate and 6-phosphogluconate phosphatase" +BW25113_3716 cbrB 0 3890866 3891333 1 3094 0.18376068376068377 468 86 "PRK09823 family inner membrane protein and creBC regulon" +BW25113_3716__5prime cbrB__5prime 0 3890668 3890865 1 2868 0.3888888888888889 198 77 "PRK09823 family inner membrane protein and creBC regulon" +BW25113_3716__3prime cbrB__3prime 0 3891334 3891531 1 1855 0.2222222222222222 198 44 "PRK09823 family inner membrane protein and creBC regulon" +BW25113_3717 cbrC 0 3891382 3891969 1 5505 0.272108843537415 588 160 "UPF0167 family protein" +BW25113_3717__5prime cbrC__5prime 0 3891184 3891381 1 1430 0.1919191919191919 198 38 "UPF0167 family protein" +BW25113_3717__3prime cbrC__3prime 0 3891970 3892167 1 507 0.12121212121212122 198 24 "UPF0167 family protein" +3891990_3892016 3891990_3892016 0 3891991 3892016 1 27 0.15384615384615385 26 4 "3891990_3892016" +3891990_3892016__5prime 3891990_3892016__5prime 0 3891793 3891990 1 1059 0.20202020202020202 198 40 "3891990_3892016" +3891990_3892016__3prime 3891990_3892016__3prime 0 3892017 3892214 1 507 0.10606060606060606 198 21 "3891990_3892016" +BW25113_3718 yieK 0 3892031 3892753 -1 3033 0.18672199170124482 723 135 "putative 6-phosphogluconolactonase" +BW25113_3718__5prime yieK__5prime 0 3892754 3892951 -1 387 0.1414141414141414 198 28 "putative 6-phosphogluconolactonase" +BW25113_3718__3prime yieK__3prime 0 3891833 3892030 -1 1053 0.21212121212121213 198 42 "putative 6-phosphogluconolactonase" +BW25113_3719 yieL 0 3892768 3893937 -1 7558 0.22735042735042735 1170 266 "putative xylanase" +BW25113_3719__5prime yieL__5prime 0 3893938 3894135 -1 3905 0.494949494949495 198 98 "putative xylanase" +BW25113_3719__3prime yieL__3prime 0 3892570 3892767 -1 1426 0.26262626262626265 198 52 "putative xylanase" +BW25113_3720 bglH 0 3893964 3895580 -1 39617 0.48484848484848486 1617 784 "carbohydrate-specific outer membrane porin and cryptic" +BW25113_3720__5prime bglH__5prime 0 3895581 3895778 -1 11015 0.5656565656565656 198 112 "carbohydrate-specific outer membrane porin and cryptic" +BW25113_3720__3prime bglH__3prime 0 3893766 3893963 -1 3262 0.48484848484848486 198 96 "carbohydrate-specific outer membrane porin and cryptic" +BW25113_3721 bglB 0 3895649 3897061 -1 28132 0.3637650389242746 1413 514 "cryptic phospho-beta-glucosidase B" +BW25113_3721__5prime bglB__5prime 0 3897062 3897259 -1 934 0.22727272727272727 198 45 "cryptic phospho-beta-glucosidase B" +BW25113_3721__3prime bglB__3prime 0 3895451 3895648 -1 4889 0.5353535353535354 198 106 "cryptic phospho-beta-glucosidase B" +BW25113_3722 bglF 0 3897080 3898957 -1 12660 0.23375931842385517 1878 439 "fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component" +BW25113_3722__5prime bglF__5prime 0 3898958 3899155 -1 1950 0.2474747474747475 198 49 "fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component" +BW25113_3722__3prime bglF__3prime 0 3896882 3897079 -1 1203 0.16161616161616163 198 32 "fused beta-glucoside-specific PTS enzymes: IIA component/IIB component/IIC component" +BW25113_3723 bglG 0 3899091 3899927 -1 21458 0.4432497013142174 837 371 "transcriptional antiterminator of the bgl operon" +BW25113_3723__5prime bglG__5prime 0 3899928 3900125 -1 437 0.15656565656565657 198 31 "transcriptional antiterminator of the bgl operon" +BW25113_3723__3prime bglG__3prime 0 3898893 3899090 -1 3973 0.43434343434343436 198 86 "transcriptional antiterminator of the bgl operon" +BW25113_3724 phoU 0 3900213 3900938 -1 1508 0.05509641873278237 726 40 "negative regulator of PhoR/PhoB two-component regulator" +BW25113_3724__5prime phoU__5prime 0 3900939 3901136 -1 713 0.11616161616161616 198 23 "negative regulator of PhoR/PhoB two-component regulator" +BW25113_3724__3prime phoU__3prime 0 3900015 3900212 -1 200 0.06565656565656566 198 13 "negative regulator of PhoR/PhoB two-component regulator" +BW25113_3725 pstB 0 3900953 3901726 -1 867 0.04780361757105943 774 37 "phosphate transporter subunit" +BW25113_3725__5prime pstB__5prime 0 3901727 3901924 -1 1322 0.19696969696969696 198 39 "phosphate transporter subunit" +BW25113_3725__3prime pstB__3prime 0 3900755 3900952 -1 249 0.05555555555555555 198 11 "phosphate transporter subunit" +3901746_3901810 3901746_3901810 0 3901747 3901810 1 31 0.0625 64 4 "3901746_3901810" +3901746_3901810__5prime 3901746_3901810__5prime 0 3901549 3901746 1 90 0.020202020202020204 198 4 "3901746_3901810" +3901746_3901810__3prime 3901746_3901810__3prime 0 3901811 3902008 1 1455 0.2222222222222222 198 44 "3901746_3901810" +BW25113_3726 pstA 0 3901909 3902799 -1 1281 0.06958473625140292 891 62 "phosphate transporter subunit" +BW25113_3726__5prime pstA__5prime 0 3902800 3902997 -1 741 0.1717171717171717 198 34 "phosphate transporter subunit" +BW25113_3726__3prime pstA__3prime 0 3901711 3901908 -1 1249 0.18686868686868688 198 37 "phosphate transporter subunit" +BW25113_3727 pstC 0 3902799 3903758 -1 1579 0.090625 960 87 "phosphate transporter subunit" +BW25113_3727__5prime pstC__5prime 0 3903759 3903956 -1 1003 0.20202020202020202 198 40 "phosphate transporter subunit" +BW25113_3727__3prime pstC__3prime 0 3902601 3902798 -1 183 0.03535353535353535 198 7 "phosphate transporter subunit" +3903802_3903837 3903802_3903837 0 3903803 3903837 1 139 0.2571428571428571 35 9 "3903802_3903837" +3903802_3903837__5prime 3903802_3903837__5prime 0 3903605 3903802 1 324 0.0707070707070707 198 14 "3903802_3903837" +3903802_3903837__3prime 3903802_3903837__3prime 0 3903838 3904035 1 950 0.20707070707070707 198 41 "3903802_3903837" +BW25113_3728 pstS 0 3903845 3904885 -1 2627 0.11335254562920269 1041 118 "periplasmic phosphate binding protein and high-affinity" +BW25113_3728__5prime pstS__5prime 0 3904886 3905083 -1 618 0.15151515151515152 198 30 "periplasmic phosphate binding protein and high-affinity" +BW25113_3728__3prime pstS__3prime 0 3903647 3903844 -1 438 0.10101010101010101 198 20 "periplasmic phosphate binding protein and high-affinity" +BW25113_3729 glmS 0 3905199 3907028 -1 22 0.001092896174863388 1830 2 "L-glutamine:D-fructose-6-phosphate aminotransferase" +BW25113_3729__5prime glmS__5prime 0 3907029 3907226 -1 388 0.09595959595959595 198 19 "L-glutamine:D-fructose-6-phosphate aminotransferase" +BW25113_3729__3prime glmS__3prime 0 3905001 3905198 -1 221 0.09595959595959595 198 19 "L-glutamine:D-fructose-6-phosphate aminotransferase" +BW25113_3730 glmU 0 3907190 3908560 -1 72 0.002188183807439825 1371 3 "fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase" +BW25113_3730__5prime glmU__5prime 0 3908561 3908758 -1 50 0.020202020202020204 198 4 "fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase" +BW25113_3730__3prime glmU__3prime 0 3906992 3907189 -1 379 0.09090909090909091 198 18 "fused N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase" +BW25113_3731 atpC 0 3908913 3909332 -1 652 0.0880952380952381 420 37 "F1 sector of membrane-bound ATP synthase and epsilon subunit" +BW25113_3731__5prime atpC__5prime 0 3909333 3909530 -1 50 0.025252525252525252 198 5 "F1 sector of membrane-bound ATP synthase and epsilon subunit" +BW25113_3731__3prime atpC__3prime 0 3908715 3908912 -1 458 0.09090909090909091 198 18 "F1 sector of membrane-bound ATP synthase and epsilon subunit" +BW25113_3732 atpD 0 3909353 3910735 -1 915 0.05422993492407809 1383 75 "F1 sector of membrane-bound ATP synthase and beta subunit" +BW25113_3732__5prime atpD__5prime 0 3910736 3910933 -1 199 0.0707070707070707 198 14 "F1 sector of membrane-bound ATP synthase and beta subunit" +BW25113_3732__3prime atpD__3prime 0 3909155 3909352 -1 215 0.10101010101010101 198 20 "F1 sector of membrane-bound ATP synthase and beta subunit" +BW25113_3733 atpG 0 3910762 3911625 -1 728 0.059027777777777776 864 51 "F1 sector of membrane-bound ATP synthase and gamma subunit" +BW25113_3733__5prime atpG__5prime 0 3911626 3911823 -1 384 0.08080808080808081 198 16 "F1 sector of membrane-bound ATP synthase and gamma subunit" +BW25113_3733__3prime atpG__3prime 0 3910564 3910761 -1 55 0.020202020202020204 198 4 "F1 sector of membrane-bound ATP synthase and gamma subunit" +BW25113_3734 atpA 0 3911676 3913217 -1 2138 0.07392996108949416 1542 114 "F1 sector of membrane-bound ATP synthase and alpha subunit" +BW25113_3734__5prime atpA__5prime 0 3913218 3913415 -1 261 0.0707070707070707 198 14 "F1 sector of membrane-bound ATP synthase and alpha subunit" +BW25113_3734__3prime atpA__3prime 0 3911478 3911675 -1 295 0.06565656565656566 198 13 "F1 sector of membrane-bound ATP synthase and alpha subunit" +BW25113_3735 atpH 0 3913230 3913763 -1 353 0.0449438202247191 534 24 "F1 sector of membrane-bound ATP synthase and delta subunit" +BW25113_3735__5prime atpH__5prime 0 3913764 3913961 -1 163 0.07575757575757576 198 15 "F1 sector of membrane-bound ATP synthase and delta subunit" +BW25113_3735__3prime atpH__3prime 0 3913032 3913229 -1 593 0.12121212121212122 198 24 "F1 sector of membrane-bound ATP synthase and delta subunit" +BW25113_3736 atpF 0 3913778 3914248 -1 225 0.04883227176220807 471 23 "F0 sector of membrane-bound ATP synthase and subunit b" +BW25113_3736__5prime atpF__5prime 0 3914249 3914446 -1 218 0.0707070707070707 198 14 "F0 sector of membrane-bound ATP synthase and subunit b" +BW25113_3736__3prime atpF__3prime 0 3913580 3913777 -1 109 0.06060606060606061 198 12 "F0 sector of membrane-bound ATP synthase and subunit b" +BW25113_3737 atpE 0 3914310 3914549 -1 395 0.0875 240 21 "F0 sector of membrane-bound ATP synthase and subunit c" +BW25113_3737__5prime atpE__5prime 0 3914550 3914747 -1 217 0.06565656565656566 198 13 "F0 sector of membrane-bound ATP synthase and subunit c" +BW25113_3737__3prime atpE__3prime 0 3914112 3914309 -1 62 0.03535353535353535 198 7 "F0 sector of membrane-bound ATP synthase and subunit c" +BW25113_3738 atpB 0 3914596 3915411 -1 1055 0.09313725490196079 816 76 "F0 sector of membrane-bound ATP synthase and subunit a" +BW25113_3738__5prime atpB__5prime 0 3915412 3915609 -1 189 0.08585858585858586 198 17 "F0 sector of membrane-bound ATP synthase and subunit a" +BW25113_3738__3prime atpB__3prime 0 3914398 3914595 -1 292 0.06565656565656566 198 13 "F0 sector of membrane-bound ATP synthase and subunit a" +BW25113_3739 atpI 0 3915420 3915800 -1 617 0.08661417322834646 381 33 "ATP synthase and membrane-bound accessory factor" +BW25113_3739__5prime atpI__5prime 0 3915801 3915998 -1 888 0.20707070707070707 198 41 "ATP synthase and membrane-bound accessory factor" +BW25113_3739__3prime atpI__3prime 0 3915222 3915419 -1 210 0.09595959595959595 198 19 "ATP synthase and membrane-bound accessory factor" +BW25113_3740 rsmG 0 3916417 3917040 -1 5635 0.2467948717948718 624 154 "16S rRNA m(7)G527 methyltransferase and SAM-dependent; glucose-inhibited cell-division protein" +BW25113_3740__5prime rsmG__5prime 0 3917041 3917238 -1 1243 0.1919191919191919 198 38 "16S rRNA m(7)G527 methyltransferase and SAM-dependent; glucose-inhibited cell-division protein" +BW25113_3740__3prime rsmG__3prime 0 3916219 3916416 -1 529 0.16161616161616163 198 32 "16S rRNA m(7)G527 methyltransferase and SAM-dependent; glucose-inhibited cell-division protein" +BW25113_3741 mnmG 0 3917104 3918993 -1 4087 0.1037037037037037 1890 196 "5-methylaminomethyl-2-thiouridine modification at tRNA U34" +BW25113_3741__5prime mnmG__5prime 0 3918994 3919191 -1 6 0.005050505050505051 198 1 "5-methylaminomethyl-2-thiouridine modification at tRNA U34" +BW25113_3741__3prime mnmG__3prime 0 3916906 3917103 -1 1333 0.2676767676767677 198 53 "5-methylaminomethyl-2-thiouridine modification at tRNA U34" +BW25113_3742 mioC 0 3919372 3919815 -1 865 0.10810810810810811 444 48 "FMN-binding protein MioC" +BW25113_3742__5prime mioC__5prime 0 3919816 3920013 -1 554 0.13131313131313133 198 26 "FMN-binding protein MioC" +BW25113_3742__3prime mioC__3prime 0 3919174 3919371 -1 0 0.0 198 0 "FMN-binding protein MioC" +BW25113_3743 asnC 0 3919905 3920363 -1 891 0.09586056644880174 459 44 "transcriptional activator of asnA; autorepressor" +BW25113_3743__5prime asnC__5prime 0 3920364 3920561 -1 0 0.0 198 0 "transcriptional activator of asnA; autorepressor" +BW25113_3743__3prime asnC__3prime 0 3919707 3919904 -1 603 0.12626262626262627 198 25 "transcriptional activator of asnA; autorepressor" +BW25113_3744 asnA 0 3920515 3921507 1 5257 0.22860020140986909 993 227 "asparagine synthetase A" +BW25113_3744__5prime asnA__5prime 0 3920317 3920514 1 60 0.005050505050505051 198 1 "asparagine synthetase A" +BW25113_3744__3prime asnA__3prime 0 3921508 3921705 1 497 0.12626262626262627 198 25 "asparagine synthetase A" +BW25113_3745 viaA 0 3921512 3922963 -1 5401 0.14049586776859505 1452 204 "stimulator of RavA ATPase activity; von Willebrand factor domain protein" +BW25113_3745__5prime viaA__5prime 0 3922964 3923161 -1 698 0.12626262626262627 198 25 "stimulator of RavA ATPase activity; von Willebrand factor domain protein" +BW25113_3745__3prime viaA__3prime 0 3921314 3921511 -1 1404 0.32323232323232326 198 64 "stimulator of RavA ATPase activity; von Willebrand factor domain protein" +BW25113_3746 ravA 0 3922957 3924453 -1 4462 0.12558450233800936 1497 188 "hexameric AAA+ MoxR family ATPase and putative molecular chaperone" +BW25113_3746__5prime ravA__5prime 0 3924454 3924651 -1 786 0.19696969696969696 198 39 "hexameric AAA+ MoxR family ATPase and putative molecular chaperone" +BW25113_3746__3prime ravA__3prime 0 3922759 3922956 -1 648 0.12626262626262627 198 25 "hexameric AAA+ MoxR family ATPase and putative molecular chaperone" +BW25113_3747 kup 0 3924676 3926544 1 6774 0.17335473515248795 1869 324 "potassium transporter" +BW25113_3747__5prime kup__5prime 0 3924478 3924675 1 832 0.20707070707070707 198 41 "potassium transporter" +BW25113_3747__3prime kup__3prime 0 3926545 3926742 1 359 0.07575757575757576 198 15 "potassium transporter" +BW25113_3747 kup 0 3925744 3925975 1 2062 0.3275862068965517 232 76 "3925743_3925975" +BW25113_3747__5prime kup__5prime 0 3925546 3925743 1 520 0.15151515151515152 198 30 "3925743_3925975" +BW25113_3747__3prime kup__3prime 0 3925976 3926173 1 809 0.13636363636363635 198 27 "3925743_3925975" +BW25113_3748 rbsD 0 3926711 3927130 1 2222 0.18571428571428572 420 78 "putative cytoplasmic sugar-binding protein" +BW25113_3748__5prime rbsD__5prime 0 3926513 3926710 1 468 0.10101010101010101 198 20 "putative cytoplasmic sugar-binding protein" +BW25113_3748__3prime rbsD__3prime 0 3927131 3927328 1 644 0.16161616161616163 198 32 "putative cytoplasmic sugar-binding protein" +BW25113_3749 rbsA 0 3927138 3928643 1 5380 0.15670650730411687 1506 236 "fused D-ribose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_3749__5prime rbsA__5prime 0 3926940 3927137 1 1398 0.22727272727272727 198 45 "fused D-ribose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_3749__3prime rbsA__3prime 0 3928644 3928841 1 456 0.10606060606060606 198 21 "fused D-ribose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_3750 rbsC 0 3928648 3929613 1 3533 0.15527950310559005 966 150 "D-ribose transporter subunit" +BW25113_3750__5prime rbsC__5prime 0 3928450 3928647 1 903 0.25252525252525254 198 50 "D-ribose transporter subunit" +BW25113_3750__3prime rbsC__3prime 0 3929614 3929811 1 304 0.10101010101010101 198 20 "D-ribose transporter subunit" +BW25113_3751 rbsB 0 3929638 3930528 1 4198 0.15712682379349047 891 140 "D-ribose transporter subunit" +BW25113_3751__5prime rbsB__5prime 0 3929440 3929637 1 448 0.06060606060606061 198 12 "D-ribose transporter subunit" +BW25113_3751__3prime rbsB__3prime 0 3930529 3930726 1 797 0.14646464646464646 198 29 "D-ribose transporter subunit" +BW25113_3752 rbsK 0 3930654 3931583 1 4614 0.1956989247311828 930 182 "ribokinase" +BW25113_3752__5prime rbsK__5prime 0 3930456 3930653 1 688 0.13636363636363635 198 27 "ribokinase" +BW25113_3752__3prime rbsK__3prime 0 3931584 3931781 1 549 0.18686868686868688 198 37 "ribokinase" +BW25113_3753 rbsR 0 3931587 3932579 1 4185 0.1822759315206445 993 181 "transcriptional repressor of ribose metabolism" +BW25113_3753__5prime rbsR__5prime 0 3931389 3931586 1 775 0.1919191919191919 198 38 "transcriptional repressor of ribose metabolism" +BW25113_3753__3prime rbsR__3prime 0 3932580 3932777 1 1366 0.18686868686868688 198 37 "transcriptional repressor of ribose metabolism" +BW25113_3754 hsrA 0 3932545 3933972 -1 7055 0.17787114845938376 1428 254 "putative multidrug or homocysteine efflux system" +BW25113_3754__5prime hsrA__5prime 0 3933973 3934170 -1 926 0.25252525252525254 198 50 "putative multidrug or homocysteine efflux system" +BW25113_3754__3prime hsrA__3prime 0 3932347 3932544 -1 586 0.13131313131313133 198 26 "putative multidrug or homocysteine efflux system" +BW25113_3755 yieP 0 3933995 3934687 -1 2871 0.18181818181818182 693 126 "putative transcriptional regulator" +BW25113_3755__5prime yieP__5prime 0 3934688 3934885 -1 67 0.030303030303030304 198 6 "putative transcriptional regulator" +BW25113_3755__3prime yieP__3prime 0 3933797 3933994 -1 1171 0.24242424242424243 198 48 "putative transcriptional regulator" +BW25113_3756 rrsC 0 3935168 3936709 1 1005 0.07198443579766536 1542 111 "16S ribosomal RNA of rrnC operon" +BW25113_3756__5prime rrsC__5prime 0 3934970 3935167 1 51 0.04040404040404041 198 8 "16S ribosomal RNA of rrnC operon" +BW25113_3756__3prime rrsC__3prime 0 3936710 3936907 1 134 0.09595959595959595 198 19 "16S ribosomal RNA of rrnC operon" +BW25113_3757 gltU 0 3936795 3936870 1 97 0.17105263157894737 76 13 "tRNA-Glu" +BW25113_3757__5prime gltU__5prime 0 3936597 3936794 1 47 0.04040404040404041 198 8 "tRNA-Glu" +BW25113_3757__3prime gltU__3prime 0 3936871 3937068 1 11 0.010101010101010102 198 2 "tRNA-Glu" +BW25113_3758 rrlC 0 3937064 3939967 1 1884 0.07024793388429752 2904 204 "23S ribosomal RNA of rrnC operon" +BW25113_3758__5prime rrlC__5prime 0 3936866 3937063 1 11 0.010101010101010102 198 2 "23S ribosomal RNA of rrnC operon" +BW25113_3758__3prime rrlC__3prime 0 3939968 3940165 1 70 0.050505050505050504 198 10 "23S ribosomal RNA of rrnC operon" +BW25113_3759 rrfC 0 3940060 3940179 1 50 0.058333333333333334 120 7 "5S ribosomal RNA of rrnC operon" +BW25113_3759__5prime rrfC__5prime 0 3939862 3940059 1 52 0.04040404040404041 198 8 "5S ribosomal RNA of rrnC operon" +BW25113_3759__3prime rrfC__3prime 0 3940180 3940377 1 77 0.03535353535353535 198 7 "5S ribosomal RNA of rrnC operon" +BW25113_3760 aspT 0 3940232 3940308 1 63 0.07792207792207792 77 6 "tRNA-Asp" +BW25113_3760__5prime aspT__5prime 0 3940034 3940231 1 64 0.04040404040404041 198 8 "tRNA-Asp" +BW25113_3760__3prime aspT__3prime 0 3940309 3940506 1 37 0.020202020202020204 198 4 "tRNA-Asp" +BW25113_3761 trpT 0 3940317 3940392 1 0 0.0 76 0 "tRNA-Trp" +BW25113_3761__5prime trpT__5prime 0 3940119 3940316 1 77 0.03535353535353535 198 7 "tRNA-Trp" +BW25113_3761__3prime trpT__3prime 0 3940393 3940590 1 45 0.025252525252525252 198 5 "tRNA-Trp" +BW25113_4480 hdfR 0 3940488 3941327 -1 1337 0.07857142857142857 840 66 "flhDC operon transcriptional repressor" +BW25113_4480__5prime hdfR__5prime 0 3941328 3941525 -1 289 0.09090909090909091 198 18 "flhDC operon transcriptional repressor" +BW25113_4480__3prime hdfR__3prime 0 3940290 3940487 -1 37 0.020202020202020204 198 4 "flhDC operon transcriptional repressor" +BW25113_3764 yifE 0 3941446 3941784 1 720 0.11209439528023599 339 38 "UPF0438 family protein" +BW25113_3764__5prime yifE__5prime 0 3941248 3941445 1 239 0.07575757575757576 198 15 "UPF0438 family protein" +BW25113_3764__3prime yifE__3prime 0 3941785 3941982 1 369 0.10101010101010101 198 20 "UPF0438 family protein" +BW25113_3765 yifB 0 3941809 3943329 -1 3910 0.1203155818540434 1521 183 "bifunctional magnesium chelatase family protein and putative transcriptional regulator" +BW25113_3765__5prime yifB__5prime 0 3943330 3943527 -1 83 0.020202020202020204 198 4 "bifunctional magnesium chelatase family protein and putative transcriptional regulator" +BW25113_3765__3prime yifB__3prime 0 3941611 3941808 -1 397 0.10606060606060606 198 21 "bifunctional magnesium chelatase family protein and putative transcriptional regulator" +BW25113_3766 ilvL 0 3943682 3943780 1 401 0.13131313131313133 99 13 "ilvG operon leader peptide" +BW25113_3766__5prime ilvL__5prime 0 3943484 3943681 1 107 0.06060606060606061 198 12 "ilvG operon leader peptide" +BW25113_3766__3prime ilvL__3prime 0 3943781 3943978 1 474 0.12121212121212122 198 24 "ilvG operon leader peptide" +BW25113_4669 ilvX 0 3943867 3943917 1 36 0.0392156862745098 51 2 "uncharacterized protein" +BW25113_4669__5prime ilvX__5prime 0 3943669 3943866 1 642 0.12121212121212122 198 24 "uncharacterized protein" +BW25113_4669__3prime ilvX__3prime 0 3943918 3944115 1 800 0.1919191919191919 198 38 "uncharacterized protein" +BW25113_4488 ilvG 0 3943920 3945564 1 7235 0.16778115501519758 1645 276 "3943919_3945564" +BW25113_4488__5prime ilvG__5prime 0 3943722 3943919 1 296 0.06565656565656566 198 13 "3943919_3945564" +BW25113_4488__3prime ilvG__3prime 0 3945565 3945762 1 368 0.1111111111111111 198 22 "3943919_3945564" +BW25113_3769 ilvM 0 3945561 3945824 1 474 0.10606060606060606 264 28 "acetolactate synthase 2 small subunit" +BW25113_3769__5prime ilvM__5prime 0 3945363 3945560 1 1153 0.1919191919191919 198 38 "acetolactate synthase 2 small subunit" +BW25113_3769__3prime ilvM__3prime 0 3945825 3946022 1 316 0.11616161616161616 198 23 "acetolactate synthase 2 small subunit" +BW25113_3770 ilvE 0 3945844 3946773 1 4033 0.1817204301075269 930 169 "branched-chain amino-acid aminotransferase" +BW25113_3770__5prime ilvE__5prime 0 3945646 3945843 1 313 0.10101010101010101 198 20 "branched-chain amino-acid aminotransferase" +BW25113_3770__3prime ilvE__3prime 0 3946774 3946971 1 679 0.15151515151515152 198 30 "branched-chain amino-acid aminotransferase" +BW25113_3771 ilvD 0 3946838 3948688 1 6834 0.15180983252296057 1851 281 "dihydroxyacid dehydratase" +BW25113_3771__5prime ilvD__5prime 0 3946640 3946837 1 1137 0.1717171717171717 198 34 "dihydroxyacid dehydratase" +BW25113_3771__3prime ilvD__3prime 0 3948689 3948886 1 2261 0.18181818181818182 198 36 "dihydroxyacid dehydratase" +BW25113_3772 ilvA 0 3948691 3950235 1 5694 0.12103559870550162 1545 187 "L-threonine dehydratase and biosynthetic; also known as threonine deaminase" +BW25113_3772__5prime ilvA__5prime 0 3948493 3948690 1 1008 0.16161616161616163 198 32 "L-threonine dehydratase and biosynthetic; also known as threonine deaminase" +BW25113_3772__3prime ilvA__3prime 0 3950236 3950433 1 235 0.07575757575757576 198 15 "L-threonine dehydratase and biosynthetic; also known as threonine deaminase" +3950243_3950269 3950243_3950269 0 3950244 3950269 1 0 0.0 26 0 "3950243_3950269" +3950243_3950269__5prime 3950243_3950269__5prime 0 3950046 3950243 1 190 0.08585858585858586 198 17 "3950243_3950269" +3950243_3950269__3prime 3950243_3950269__3prime 0 3950270 3950467 1 357 0.1111111111111111 198 22 "3950243_3950269" +BW25113_3773 ilvY 0 3950287 3951180 -1 3085 0.15436241610738255 894 138 "transcriptional activator of ilvC; autorepressor" +BW25113_3773__5prime ilvY__5prime 0 3951181 3951378 -1 376 0.10606060606060606 198 21 "transcriptional activator of ilvC; autorepressor" +BW25113_3773__3prime ilvY__3prime 0 3950089 3950286 -1 162 0.06060606060606061 198 12 "transcriptional activator of ilvC; autorepressor" +BW25113_3774 ilvC 0 3951330 3952805 1 7102 0.18292682926829268 1476 270 "ketol-acid reductoisomerase and NAD(P)-binding" +BW25113_3774__5prime ilvC__5prime 0 3951132 3951329 1 338 0.11616161616161616 198 23 "ketol-acid reductoisomerase and NAD(P)-binding" +BW25113_3774__3prime ilvC__3prime 0 3952806 3953003 1 1376 0.35858585858585856 198 71 "ketol-acid reductoisomerase and NAD(P)-binding" +BW25113_3775 ppiC 0 3952892 3953173 -1 1113 0.19148936170212766 282 54 "peptidyl-prolyl cis-trans isomerase C (rotamase C)" +BW25113_3775__5prime ppiC__5prime 0 3953174 3953371 -1 572 0.12121212121212122 198 24 "peptidyl-prolyl cis-trans isomerase C (rotamase C)" +BW25113_3775__3prime ppiC__3prime 0 3952694 3952891 -1 1335 0.32323232323232326 198 64 "peptidyl-prolyl cis-trans isomerase C (rotamase C)" +BW25113_3777 yifN 0 3953372 3953820 -1 1905 0.18040089086859687 449 81 "3953371_3953820" +BW25113_3777__5prime yifN__5prime 0 3953821 3954018 -1 241 0.10606060606060606 198 21 "3953371_3953820" +BW25113_3777__3prime yifN__3prime 0 3953174 3953371 -1 572 0.12121212121212122 198 24 "3953371_3953820" +BW25113_3778 rep 0 3954037 3956058 1 4283 0.09099901088031652 2022 184 "DNA helicase and single-stranded DNA-dependent ATPase" +BW25113_3778__5prime rep__5prime 0 3953839 3954036 1 187 0.08080808080808081 198 16 "DNA helicase and single-stranded DNA-dependent ATPase" +BW25113_3778__3prime rep__3prime 0 3956059 3956256 1 802 0.2474747474747475 198 49 "DNA helicase and single-stranded DNA-dependent ATPase" +3956059_3956095 3956059_3956095 0 3956060 3956095 1 144 0.3055555555555556 36 11 "3956059_3956095" +3956059_3956095__5prime 3956059_3956095__5prime 0 3955862 3956059 1 787 0.08585858585858586 198 17 "3956059_3956095" +3956059_3956095__3prime 3956059_3956095__3prime 0 3956096 3956293 1 683 0.21212121212121213 198 42 "3956059_3956095" +BW25113_3779 gpp 0 3956105 3957589 -1 5873 0.1717171717171717 1485 255 "guanosine pentaphosphatase/exopolyphosphatase" +BW25113_3779__5prime gpp__5prime 0 3957590 3957787 -1 940 0.18686868686868688 198 37 "guanosine pentaphosphatase/exopolyphosphatase" +BW25113_3779__3prime gpp__3prime 0 3955907 3956104 -1 555 0.1111111111111111 198 22 "guanosine pentaphosphatase/exopolyphosphatase" +BW25113_3780 rhlB 0 3957725 3958990 -1 6500 0.19510268562401265 1266 247 "ATP-dependent RNA helicase" +BW25113_3780__5prime rhlB__5prime 0 3958991 3959188 -1 753 0.21212121212121213 198 42 "ATP-dependent RNA helicase" +BW25113_3780__3prime rhlB__3prime 0 3957527 3957724 -1 673 0.16161616161616163 198 32 "ATP-dependent RNA helicase" +BW25113_3781 trxA 0 3959121 3959450 1 2045 0.17575757575757575 330 58 "thioredoxin 1" +BW25113_3781__5prime trxA__5prime 0 3958923 3959120 1 284 0.11616161616161616 198 23 "thioredoxin 1" +BW25113_3781__3prime trxA__3prime 0 3959451 3959648 1 50 0.025252525252525252 198 5 "thioredoxin 1" +BW25113_3783 rho 0 3959777 3961036 1 104 0.0031746031746031746 1260 4 "transcription termination factor" +BW25113_3783__5prime rho__5prime 0 3959579 3959776 1 261 0.09090909090909091 198 18 "transcription termination factor" +BW25113_3783__3prime rho__3prime 0 3961037 3961234 1 447 0.10101010101010101 198 20 "transcription termination factor" +BW25113_3783 rho 0 3960532 3960800 1 0 0.0 269 0 "3960531_3960800" +BW25113_3783__5prime rho__5prime 0 3960334 3960531 1 0 0.0 198 0 "3960531_3960800" +BW25113_3783__3prime rho__3prime 0 3960801 3960998 1 38 0.005050505050505051 198 1 "3960531_3960800" +BW25113_3784 wecA 0 3961276 3962379 1 5780 0.2164855072463768 1104 239 "UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase" +BW25113_3784__5prime wecA__5prime 0 3961078 3961275 1 491 0.08585858585858586 198 17 "UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase" +BW25113_3784__3prime wecA__3prime 0 3962380 3962577 1 1211 0.23232323232323232 198 46 "UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase" +BW25113_3785 wzzE 0 3962391 3963437 1 6047 0.17860553963705827 1047 187 "Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein" +BW25113_3785__5prime wzzE__5prime 0 3962193 3962390 1 1047 0.22727272727272727 198 45 "Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein" +BW25113_3785__3prime wzzE__3prime 0 3963438 3963635 1 806 0.19696969696969696 198 39 "Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein" +BW25113_3786 wecB 0 3963493 3964623 1 7194 0.2413793103448276 1131 273 "UDP-N-acetyl glucosamine-2-epimerase" +BW25113_3786__5prime wecB__5prime 0 3963295 3963492 1 957 0.16161616161616163 198 32 "UDP-N-acetyl glucosamine-2-epimerase" +BW25113_3786__3prime wecB__3prime 0 3964624 3964821 1 827 0.15151515151515152 198 30 "UDP-N-acetyl glucosamine-2-epimerase" +BW25113_3787 wecC 0 3964620 3965882 1 5327 0.17735550277117973 1263 224 "UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase" +BW25113_3787__5prime wecC__5prime 0 3964422 3964619 1 1153 0.20202020202020202 198 40 "UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase" +BW25113_3787__3prime wecC__3prime 0 3965883 3966080 1 704 0.1414141414141414 198 28 "UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase" +BW25113_3788 rffG 0 3965882 3966949 1 4995 0.17883895131086142 1068 191 "dTDP-glucose 4 and 6-dehydratase" +BW25113_3788__5prime rffG__5prime 0 3965684 3965881 1 856 0.17676767676767677 198 35 "dTDP-glucose 4 and 6-dehydratase" +BW25113_3788__3prime rffG__3prime 0 3966950 3967147 1 849 0.1717171717171717 198 34 "dTDP-glucose 4 and 6-dehydratase" +BW25113_3789 rffH 0 3966968 3967849 1 4588 0.2108843537414966 882 186 "glucose-1-phosphate thymidylyltransferase" +BW25113_3789__5prime rffH__5prime 0 3966770 3966967 1 733 0.14646464646464646 198 29 "glucose-1-phosphate thymidylyltransferase" +BW25113_3789__3prime rffH__3prime 0 3967850 3968047 1 835 0.1414141414141414 198 28 "glucose-1-phosphate thymidylyltransferase" +BW25113_3790 wecD 0 3967827 3968501 1 1994 0.08592592592592592 675 58 "TDP-fucosamine acetyltransferase" +BW25113_3790__5prime wecD__5prime 0 3967629 3967826 1 894 0.1919191919191919 198 38 "TDP-fucosamine acetyltransferase" +BW25113_3790__3prime wecD__3prime 0 3968502 3968699 1 1680 0.26262626262626265 198 52 "TDP-fucosamine acetyltransferase" +BW25113_3791 wecE 0 3968506 3969636 1 6768 0.22369584438549955 1131 253 "TDP-4-oxo-6-deoxy-D-glucose transaminase" +BW25113_3791__5prime wecE__5prime 0 3968308 3968505 1 528 0.05555555555555555 198 11 "TDP-4-oxo-6-deoxy-D-glucose transaminase" +BW25113_3791__3prime wecE__3prime 0 3969637 3969834 1 800 0.16666666666666666 198 33 "TDP-4-oxo-6-deoxy-D-glucose transaminase" +BW25113_3792 wzxE 0 3969638 3970888 1 5285 0.18545163868904876 1251 232 "O-antigen translocase" +BW25113_3792__5prime wzxE__5prime 0 3969440 3969637 1 1179 0.23737373737373738 198 47 "O-antigen translocase" +BW25113_3792__3prime wzxE__3prime 0 3970889 3971086 1 247 0.10101010101010101 198 20 "O-antigen translocase" +BW25113_4481 wecF 0 3970885 3971964 1 3595 0.14722222222222223 1080 159 "TDP-Fuc4NAc:lipidIIFuc4NAc transferase" +BW25113_4481__5prime wecF__5prime 0 3970687 3970884 1 633 0.21717171717171718 198 43 "TDP-Fuc4NAc:lipidIIFuc4NAc transferase" +BW25113_4481__3prime wecF__3prime 0 3971965 3972162 1 0 0.0 198 0 "TDP-Fuc4NAc:lipidIIFuc4NAc transferase" +BW25113_3793 wzyE 0 3971961 3973313 1 470 0.008869179600886918 1353 12 "putative ECA polysaccharide chain elongation protein" +BW25113_3793__5prime wzyE__5prime 0 3971763 3971960 1 932 0.18181818181818182 198 36 "putative ECA polysaccharide chain elongation protein" +BW25113_3793__3prime wzyE__3prime 0 3973314 3973511 1 1809 0.21212121212121213 198 42 "putative ECA polysaccharide chain elongation protein" +BW25113_3794 wecG 0 3973316 3974056 1 3335 0.1484480431848853 741 110 "UDP-N-acetyl-D-mannosaminuronic acid transferase" +BW25113_3794__5prime wecG__5prime 0 3973118 3973315 1 470 0.06060606060606061 198 12 "UDP-N-acetyl-D-mannosaminuronic acid transferase" +BW25113_3794__3prime wecG__3prime 0 3974057 3974254 1 403 0.09595959595959595 198 19 "UDP-N-acetyl-D-mannosaminuronic acid transferase" +BW25113_3795 yifK 0 3974247 3975632 1 5397 0.16522366522366522 1386 229 "putative APC family amino acid transporter" +BW25113_3795__5prime yifK__5prime 0 3974049 3974246 1 388 0.09090909090909091 198 18 "putative APC family amino acid transporter" +BW25113_3795__3prime yifK__3prime 0 3975633 3975830 1 0 0.0 198 0 "putative APC family amino acid transporter" +BW25113_3796 argX 0 3975735 3975811 1 0 0.0 77 0 "tRNA-Arg" +BW25113_3796__5prime argX__5prime 0 3975537 3975734 1 32 0.005050505050505051 198 1 "tRNA-Arg" +BW25113_3796__3prime argX__3prime 0 3975812 3976009 1 96 0.045454545454545456 198 9 "tRNA-Arg" +BW25113_3797 hisR 0 3975869 3975945 1 0 0.0 77 0 "tRNA-His" +BW25113_3797__5prime hisR__5prime 0 3975671 3975868 1 0 0.0 198 0 "tRNA-His" +BW25113_3797__3prime hisR__3prime 0 3975946 3976143 1 158 0.09090909090909091 198 18 "tRNA-His" +BW25113_3798 leuT 0 3975966 3976052 1 158 0.20689655172413793 87 18 "tRNA-Leu" +BW25113_3798__5prime leuT__5prime 0 3975768 3975965 1 0 0.0 198 0 "tRNA-Leu" +BW25113_3798__3prime leuT__3prime 0 3976053 3976250 1 48 0.015151515151515152 198 3 "tRNA-Leu" +BW25113_3799 proM 0 3976095 3976171 1 0 0.0 77 0 "tRNA-Pro" +BW25113_3799__5prime proM__5prime 0 3975897 3976094 1 158 0.09090909090909091 198 18 "tRNA-Pro" +BW25113_3799__3prime proM__3prime 0 3976172 3976369 1 315 0.08080808080808081 198 16 "tRNA-Pro" +BW25113_3800 aslB 0 3976318 3977553 1 2640 0.1262135922330097 1236 156 "putative AslA-specific sulfatase-maturating enzyme" +BW25113_3800__5prime aslB__5prime 0 3976120 3976317 1 165 0.050505050505050504 198 10 "putative AslA-specific sulfatase-maturating enzyme" +BW25113_3800__3prime aslB__3prime 0 3977554 3977751 1 576 0.14646464646464646 198 29 "putative AslA-specific sulfatase-maturating enzyme" +3977579_3977683 3977579_3977683 0 3977580 3977683 1 300 0.14423076923076922 104 15 "3977579_3977683" +3977579_3977683__5prime 3977579_3977683__5prime 0 3977382 3977579 1 538 0.16666666666666666 198 33 "3977579_3977683" +3977579_3977683__3prime 3977579_3977683__3prime 0 3977684 3977881 1 1211 0.2474747474747475 198 49 "3977579_3977683" +BW25113_3801 aslA 0 3977712 3979367 -1 10211 0.24396135265700483 1656 404 "putative Ser-type periplasmic non-aryl sulfatase" +BW25113_3801__5prime aslA__5prime 0 3979368 3979565 -1 1205 0.2222222222222222 198 44 "putative Ser-type periplasmic non-aryl sulfatase" +BW25113_3801__3prime aslA__3prime 0 3977514 3977711 -1 686 0.18181818181818182 198 36 "putative Ser-type periplasmic non-aryl sulfatase" +BW25113_4456 glmZ 0 3979792 3979998 1 2377 0.36231884057971014 207 75 "sRNA antisense activator of glmS mRNA and Hfq-dependent" +BW25113_4456__5prime glmZ__5prime 0 3979594 3979791 1 1781 0.2828282828282828 198 56 "sRNA antisense activator of glmS mRNA and Hfq-dependent" +BW25113_4456__3prime glmZ__3prime 0 3979999 3980196 1 1111 0.18181818181818182 198 36 "sRNA antisense activator of glmS mRNA and Hfq-dependent" +BW25113_3802 hemY 0 3980046 3981242 -1 6117 0.17376775271512113 1197 208 "putative protoheme IX synthesis protein" +BW25113_3802__5prime hemY__5prime 0 3981243 3981440 -1 465 0.14646464646464646 198 29 "putative protoheme IX synthesis protein" +BW25113_3802__3prime hemY__3prime 0 3979848 3980045 -1 1567 0.32323232323232326 198 64 "putative protoheme IX synthesis protein" +BW25113_3803 hemX 0 3981245 3982426 -1 3809 0.12774957698815567 1182 151 "putative uroporphyrinogen III methyltransferase" +BW25113_3803__5prime hemX__5prime 0 3982427 3982624 -1 100 0.025252525252525252 198 5 "putative uroporphyrinogen III methyltransferase" +BW25113_3803__3prime hemX__3prime 0 3981047 3981244 -1 494 0.13636363636363635 198 27 "putative uroporphyrinogen III methyltransferase" +BW25113_3804 hemD 0 3982448 3983188 -1 30 0.004048582995951417 741 3 "uroporphyrinogen III synthase" +BW25113_3804__5prime hemD__5prime 0 3983189 3983386 -1 123 0.030303030303030304 198 6 "uroporphyrinogen III synthase" +BW25113_3804__3prime hemD__3prime 0 3982250 3982447 -1 608 0.18181818181818182 198 36 "uroporphyrinogen III synthase" +BW25113_3805 hemC 0 3983185 3984126 -1 134 0.008492569002123142 942 8 "hydroxymethylbilane synthase" +BW25113_3805__5prime hemC__5prime 0 3984127 3984324 -1 1125 0.19696969696969696 198 39 "hydroxymethylbilane synthase" +BW25113_3805__3prime hemC__3prime 0 3982987 3983184 -1 0 0.0 198 0 "hydroxymethylbilane synthase" +BW25113_3806 cyaA 0 3984513 3987059 1 3948 0.08519827247742442 2547 217 "adenylate cyclase" +BW25113_3806__5prime cyaA__5prime 0 3984315 3984512 1 107 0.06060606060606061 198 12 "adenylate cyclase" +BW25113_3806__3prime cyaA__3prime 0 3987060 3987257 1 492 0.12121212121212122 198 24 "adenylate cyclase" +BW25113_3807 cyaY 0 3987099 3987419 -1 826 0.102803738317757 321 33 "iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein" +BW25113_3807__5prime cyaY__5prime 0 3987420 3987617 -1 1726 0.2777777777777778 198 55 "iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein" +BW25113_3807__3prime cyaY__3prime 0 3986901 3987098 -1 631 0.12626262626262627 198 25 "iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein" +BW25113_4558 yifL 0 3987882 3988085 1 659 0.18137254901960784 204 37 "putative lipoprotein" +BW25113_4558__5prime yifL__5prime 0 3987684 3987881 1 685 0.18686868686868688 198 37 "putative lipoprotein" +BW25113_4558__3prime yifL__3prime 0 3988086 3988283 1 89 0.045454545454545456 198 9 "putative lipoprotein" +BW25113_3809 dapF 0 3988122 3988946 1 424 0.052121212121212124 825 43 "diaminopimelate epimerase" +BW25113_3809__5prime dapF__5prime 0 3987924 3988121 1 311 0.1414141414141414 198 28 "diaminopimelate epimerase" +BW25113_3809__3prime dapF__3prime 0 3988947 3989144 1 587 0.18181818181818182 198 36 "diaminopimelate epimerase" +BW25113_3810 yigA 0 3988943 3989650 1 3655 0.23587570621468926 708 167 "DUF484 family protein" +BW25113_3810__5prime yigA__5prime 0 3988745 3988942 1 116 0.06565656565656566 198 13 "DUF484 family protein" +BW25113_3810__3prime yigA__3prime 0 3989651 3989848 1 355 0.09090909090909091 198 18 "DUF484 family protein" +BW25113_3811 xerC 0 3989647 3990543 1 1770 0.10702341137123746 897 96 "site-specific tyrosine recombinase" +BW25113_3811__5prime xerC__5prime 0 3989449 3989646 1 932 0.21212121212121213 198 42 "site-specific tyrosine recombinase" +BW25113_3811__3prime xerC__3prime 0 3990544 3990741 1 1087 0.20202020202020202 198 40 "site-specific tyrosine recombinase" +BW25113_3812 yigB 0 3990543 3991259 1 2511 0.16457461645746166 717 118 "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" +BW25113_3812__5prime yigB__5prime 0 3990345 3990542 1 498 0.12626262626262627 198 25 "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" +BW25113_3812__3prime yigB__3prime 0 3991260 3991457 1 919 0.20707070707070707 198 41 "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" +BW25113_3813 uvrD 0 3991343 3993505 1 11149 0.19602404068423485 2163 424 "DNA-dependent ATPase I and helicase II" +BW25113_3813__5prime uvrD__5prime 0 3991145 3991342 1 451 0.09595959595959595 198 19 "DNA-dependent ATPase I and helicase II" +BW25113_3813__3prime uvrD__3prime 0 3993506 3993703 1 328 0.0707070707070707 198 14 "DNA-dependent ATPase I and helicase II" +3993509_3993612 3993509_3993612 0 3993510 3993612 1 103 0.04854368932038835 103 5 "3993509_3993612" +3993509_3993612__5prime 3993509_3993612__5prime 0 3993312 3993509 1 925 0.15656565656565657 198 31 "3993509_3993612" +3993509_3993612__3prime 3993509_3993612__3prime 0 3993613 3993810 1 378 0.12626262626262627 198 25 "3993509_3993612" +BW25113_4482 yigE 0 3993652 3994416 -1 2533 0.13333333333333333 765 102 "DUF2233 family protein" +BW25113_4482__5prime yigE__5prime 0 3994417 3994614 -1 1251 0.20202020202020202 198 40 "DUF2233 family protein" +BW25113_4482__3prime yigE__3prime 0 3993454 3993651 -1 652 0.10101010101010101 198 20 "DUF2233 family protein" +BW25113_3816 corA 0 3994786 3995736 1 3139 0.1587802313354364 951 151 "magnesium/nickel/cobalt transporter" +BW25113_3816__5prime corA__5prime 0 3994588 3994785 1 489 0.1717171717171717 198 34 "magnesium/nickel/cobalt transporter" +BW25113_3816__3prime corA__3prime 0 3995737 3995934 1 2980 0.5050505050505051 198 100 "magnesium/nickel/cobalt transporter" +BW25113_3817 yigF 0 3995779 3996159 -1 2454 0.28608923884514437 381 109 "putative inner membrane protein" +BW25113_3817__5prime yigF__5prime 0 3996160 3996357 -1 1834 0.2777777777777778 198 55 "putative inner membrane protein" +BW25113_3817__3prime yigF__3prime 0 3995581 3995778 -1 2150 0.3484848484848485 198 69 "putative inner membrane protein" +BW25113_3818 yigG 0 3996173 3996553 -1 2807 0.23622047244094488 381 90 "PRK11371 family inner membrane protein" +BW25113_3818__5prime yigG__5prime 0 3996554 3996751 -1 2294 0.30303030303030304 198 60 "PRK11371 family inner membrane protein" +BW25113_3818__3prime yigG__3prime 0 3995975 3996172 -1 660 0.16666666666666666 198 33 "PRK11371 family inner membrane protein" +BW25113_3819 rarD 0 3996648 3997538 -1 8002 0.345679012345679 891 308 "putative chloramphenical resistance permease" +BW25113_3819__5prime rarD__5prime 0 3997539 3997736 -1 2083 0.35353535353535354 198 70 "putative chloramphenical resistance permease" +BW25113_3819__3prime rarD__3prime 0 3996450 3996647 -1 1296 0.20707070707070707 198 41 "putative chloramphenical resistance permease" +BW25113_3820 yigI 0 3997590 3998057 -1 4559 0.33547008547008544 468 157 "4HBT thioesterase family protein" +BW25113_3820__5prime yigI__5prime 0 3998058 3998255 -1 1329 0.21717171717171718 198 43 "4HBT thioesterase family protein" +BW25113_3820__3prime yigI__3prime 0 3997392 3997589 -1 1317 0.32323232323232326 198 64 "4HBT thioesterase family protein" +BW25113_3821 pldA 0 3998222 3999091 1 5448 0.2160919540229885 870 188 "outer membrane phospholipase A" +BW25113_3821__5prime pldA__5prime 0 3998024 3998221 1 1253 0.25757575757575757 198 51 "outer membrane phospholipase A" +BW25113_3821__3prime pldA__3prime 0 3999092 3999289 1 501 0.06565656565656566 198 13 "outer membrane phospholipase A" +BW25113_3822 recQ 0 3999224 4001053 1 5703 0.14863387978142076 1830 272 "ATP-dependent DNA helicase" +BW25113_3822__5prime recQ__5prime 0 3999026 3999223 1 649 0.10101010101010101 198 20 "ATP-dependent DNA helicase" +BW25113_3822__3prime recQ__3prime 0 4001054 4001251 1 183 0.05555555555555555 198 11 "ATP-dependent DNA helicase" +BW25113_3823 rhtC 0 4001117 4001737 1 2248 0.17391304347826086 621 108 "threonine efflux pump" +BW25113_3823__5prime rhtC__5prime 0 4000919 4001116 1 640 0.15151515151515152 198 30 "threonine efflux pump" +BW25113_3823__3prime rhtC__3prime 0 4001738 4001935 1 1087 0.23232323232323232 198 46 "threonine efflux pump" +4001756_4001790 4001756_4001790 0 4001757 4001790 1 192 0.23529411764705882 34 8 "4001756_4001790" +4001756_4001790__5prime 4001756_4001790__5prime 0 4001559 4001756 1 806 0.17676767676767677 198 35 "4001756_4001790" +4001756_4001790__3prime 4001756_4001790__3prime 0 4001791 4001988 1 1150 0.23737373737373738 198 47 "4001756_4001790" +BW25113_3824 rhtB 0 4001799 4002419 -1 2536 0.18518518518518517 621 115 "homoserine and homoserine lactone and S-methyl-methionine efflux pump" +BW25113_3824__5prime rhtB__5prime 0 4002420 4002617 -1 381 0.08080808080808081 198 16 "homoserine and homoserine lactone and S-methyl-methionine efflux pump" +BW25113_3824__3prime rhtB__3prime 0 4001601 4001798 -1 961 0.20707070707070707 198 41 "homoserine and homoserine lactone and S-methyl-methionine efflux pump" +BW25113_3825 pldB 0 4002530 4003552 1 4887 0.176930596285435 1023 181 "lysophospholipase L2" +BW25113_3825__5prime pldB__5prime 0 4002332 4002529 1 677 0.13636363636363635 198 27 "lysophospholipase L2" +BW25113_3825__3prime pldB__3prime 0 4003553 4003750 1 366 0.09090909090909091 198 18 "lysophospholipase L2" +BW25113_3826 yigL 0 4003560 4004360 1 4046 0.15106117353308365 801 121 "pyridoxal phosphate phosphatase" +BW25113_3826__5prime yigL__5prime 0 4003362 4003559 1 763 0.14646464646464646 198 29 "pyridoxal phosphate phosphatase" +BW25113_3826__3prime yigL__3prime 0 4004361 4004558 1 511 0.15151515151515152 198 30 "pyridoxal phosphate phosphatase" +BW25113_3827 yigM 0 4004436 4005335 1 3315 0.17 900 153 "putative inner membrane EamA-like transporter" +BW25113_3827__5prime yigM__5prime 0 4004238 4004435 1 951 0.16161616161616163 198 32 "putative inner membrane EamA-like transporter" +BW25113_3827__3prime yigM__3prime 0 4005336 4005533 1 1821 0.26262626262626265 198 52 "putative inner membrane EamA-like transporter" +BW25113_3828 metR 0 4005223 4006176 -1 4152 0.18448637316561844 954 176 "methionine biosynthesis regulon transcriptional regulator" +BW25113_3828__5prime metR__5prime 0 4006177 4006374 -1 129 0.050505050505050504 198 10 "methionine biosynthesis regulon transcriptional regulator" +BW25113_3828__3prime metR__3prime 0 4005025 4005222 -1 566 0.15656565656565657 198 31 "methionine biosynthesis regulon transcriptional regulator" +BW25113_3829 metE 0 4006413 4008674 1 8454 0.15296198054818744 2262 346 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" +BW25113_3829__5prime metE__5prime 0 4006215 4006412 1 123 0.045454545454545456 198 9 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" +BW25113_3829__3prime metE__3prime 0 4008675 4008872 1 1276 0.13131313131313133 198 26 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" +4008681_4008704 4008681_4008704 0 4008682 4008704 1 21 0.08695652173913043 23 2 "4008681_4008704" +4008681_4008704__5prime 4008681_4008704__5prime 0 4008484 4008681 1 607 0.10101010101010101 198 20 "4008681_4008704" +4008681_4008704__3prime 4008681_4008704__3prime 0 4008705 4008902 1 1380 0.15656565656565657 198 31 "4008681_4008704" +BW25113_3830 ysgA 0 4008714 4009529 -1 4589 0.17892156862745098 816 146 "putative carboxymethylenebutenolidase" +BW25113_3830__5prime ysgA__5prime 0 4009530 4009727 -1 850 0.15656565656565657 198 31 "putative carboxymethylenebutenolidase" +BW25113_3830__3prime ysgA__3prime 0 4008516 4008713 -1 437 0.08080808080808081 198 16 "putative carboxymethylenebutenolidase" +BW25113_3831 udp 0 4009791 4010552 1 5075 0.21653543307086615 762 165 "uridine phosphorylase" +BW25113_3831__5prime udp__5prime 0 4009593 4009790 1 447 0.06565656565656566 198 13 "uridine phosphorylase" +BW25113_3831__3prime udp__3prime 0 4010553 4010750 1 361 0.09090909090909091 198 18 "uridine phosphorylase" +BW25113_3832 rmuC 0 4010693 4012120 1 6340 0.16036414565826332 1428 229 "DNA recombination protein" +BW25113_3832__5prime rmuC__5prime 0 4010495 4010692 1 229 0.06060606060606061 198 12 "DNA recombination protein" +BW25113_3832__3prime rmuC__3prime 0 4012121 4012318 1 456 0.10101010101010101 198 20 "DNA recombination protein" +BW25113_3833 ubiE 0 4012215 4012970 1 25 0.003968253968253968 756 3 "bifunctional 2-octaprenyl-6-methoxy-1 and 4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase" +BW25113_3833__5prime ubiE__5prime 0 4012017 4012214 1 739 0.20707070707070707 198 41 "bifunctional 2-octaprenyl-6-methoxy-1 and 4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase" +BW25113_3833__3prime ubiE__3prime 0 4012971 4013168 1 635 0.16666666666666666 198 33 "bifunctional 2-octaprenyl-6-methoxy-1 and 4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase" +BW25113_3834 ubiJ 0 4012984 4013589 1 1613 0.15346534653465346 606 93 "aerobic ubiquinone synthesis protein and SCP2 family protein" +BW25113_3834__5prime ubiJ__5prime 0 4012786 4012983 1 20 0.010101010101010102 198 2 "aerobic ubiquinone synthesis protein and SCP2 family protein" +BW25113_3834__3prime ubiJ__3prime 0 4013590 4013787 1 33 0.015151515151515152 198 3 "aerobic ubiquinone synthesis protein and SCP2 family protein" +BW25113_4707 esrE 0 4013338 4013589 1 548 0.1111111111111111 252 28 "essential sRNA of unknown function" +BW25113_4707__5prime esrE__5prime 0 4013140 4013337 1 652 0.20202020202020202 198 40 "essential sRNA of unknown function" +BW25113_4707__3prime esrE__3prime 0 4013590 4013787 1 33 0.015151515151515152 198 3 "essential sRNA of unknown function" +BW25113_3835 ubiB 0 4013586 4015226 1 40 0.002437538086532602 1641 4 '"regulator of octaprenylphenol hydroxylation and ubiquinone synthesis; regulator of 2''-N-acetyltransferase; putative ABC1 family protein kinase"' +BW25113_3835__5prime ubiB__5prime 0 4013388 4013585 1 379 0.12121212121212122 198 24 '"regulator of octaprenylphenol hydroxylation and ubiquinone synthesis; regulator of 2''-N-acetyltransferase; putative ABC1 family protein kinase"' +BW25113_3835__3prime ubiB__3prime 0 4015227 4015424 1 1216 0.25252525252525254 198 50 '"regulator of octaprenylphenol hydroxylation and ubiquinone synthesis; regulator of 2''-N-acetyltransferase; putative ABC1 family protein kinase"' +BW25113_3836 tatA 0 4015305 4015574 1 1545 0.2518518518518518 270 68 "TatABCE protein translocation system subunit" +BW25113_3836__5prime tatA__5prime 0 4015107 4015304 1 707 0.12121212121212122 198 24 "TatABCE protein translocation system subunit" +BW25113_3836__3prime tatA__3prime 0 4015575 4015772 1 1323 0.23737373737373738 198 47 "TatABCE protein translocation system subunit" +BW25113_3838 tatB 0 4015578 4016093 1 3287 0.2558139534883721 516 132 "TatABCE protein translocation system subunit" +BW25113_3838__5prime tatB__5prime 0 4015380 4015577 1 1339 0.2727272727272727 198 54 "TatABCE protein translocation system subunit" +BW25113_3838__3prime tatB__3prime 0 4016094 4016291 1 1265 0.2878787878787879 198 57 "TatABCE protein translocation system subunit" +BW25113_3839 tatC 0 4016096 4016872 1 4342 0.2097812097812098 777 163 "TatABCE protein translocation system subunit" +BW25113_3839__5prime tatC__5prime 0 4015898 4016095 1 1545 0.2878787878787879 198 57 "TatABCE protein translocation system subunit" +BW25113_3839__3prime tatC__3prime 0 4016873 4017070 1 1799 0.2676767676767677 198 53 "TatABCE protein translocation system subunit" +BW25113_4483 tatD 0 4016914 4017696 1 5905 0.22349936143039592 783 175 "quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase" +BW25113_4483__5prime tatD__5prime 0 4016716 4016913 1 468 0.17676767676767677 198 35 "quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase" +BW25113_4483__3prime tatD__3prime 0 4017697 4017894 1 666 0.23232323232323232 198 46 "quality control of Tat-exported FeS proteins; Mg-dependent cytoplasmic DNase" +BW25113_3842 rfaH 0 4017693 4018181 -1 1697 0.18813905930470348 489 92 "transcription antitermination protein" +BW25113_3842__5prime rfaH__5prime 0 4018182 4018379 -1 945 0.24242424242424243 198 48 "transcription antitermination protein" +BW25113_3842__3prime rfaH__3prime 0 4017495 4017692 -1 1829 0.20202020202020202 198 40 "transcription antitermination protein" +BW25113_3843 ubiD 0 4018348 4019841 1 166 0.009370816599732263 1494 14 "3-octaprenyl-4-hydroxybenzoate decarboxylase" +BW25113_3843__5prime ubiD__5prime 0 4018150 4018347 1 1111 0.2828282828282828 198 56 "3-octaprenyl-4-hydroxybenzoate decarboxylase" +BW25113_3843__3prime ubiD__3prime 0 4019842 4020039 1 647 0.20202020202020202 198 40 "3-octaprenyl-4-hydroxybenzoate decarboxylase" +BW25113_3844 fre 0 4019887 4020588 1 1773 0.14957264957264957 702 105 "NAD(P)H-flavin reductase" +BW25113_3844__5prime fre__5prime 0 4019689 4019886 1 257 0.10101010101010101 198 20 "NAD(P)H-flavin reductase" +BW25113_3844__3prime fre__3prime 0 4020589 4020786 1 797 0.23232323232323232 198 46 "NAD(P)H-flavin reductase" +4020681_4020962 4020681_4020962 0 4020682 4020962 1 1374 0.2277580071174377 281 64 "4020681_4020962" +4020681_4020962__5prime 4020681_4020962__5prime 0 4020484 4020681 1 565 0.13636363636363635 198 27 "4020681_4020962" +4020681_4020962__3prime 4020681_4020962__3prime 0 4020963 4021160 1 1706 0.2777777777777778 198 55 "4020681_4020962" +BW25113_3845 fadA 0 4020969 4022132 -1 6236 0.17439862542955326 1164 203 "3-ketoacyl-CoA thiolase (thiolase I)" +BW25113_3845__5prime fadA__5prime 0 4022133 4022330 -1 1027 0.23232323232323232 198 46 "3-ketoacyl-CoA thiolase (thiolase I)" +BW25113_3845__3prime fadA__3prime 0 4020771 4020968 -1 1102 0.2222222222222222 198 44 "3-ketoacyl-CoA thiolase (thiolase I)" +BW25113_3846 fadB 0 4022142 4024331 -1 5994 0.13287671232876713 2190 291 "fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase" +BW25113_3846__5prime fadB__5prime 0 4024332 4024529 -1 397 0.07575757575757576 198 15 "fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase" +BW25113_3846__3prime fadB__3prime 0 4021944 4022141 -1 881 0.1414141414141414 198 28 "fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase" +BW25113_3847 pepQ 0 4024521 4025852 1 6335 0.19744744744744744 1332 263 "proline dipeptidase" +BW25113_3847__5prime pepQ__5prime 0 4024323 4024520 1 479 0.10101010101010101 198 20 "proline dipeptidase" +BW25113_3847__3prime pepQ__3prime 0 4025853 4026050 1 718 0.18686868686868688 198 37 "proline dipeptidase" +BW25113_3848 yigZ 0 4025852 4026466 1 1636 0.14634146341463414 615 90 "UPF0029 family protein" +BW25113_3848__5prime yigZ__5prime 0 4025654 4025851 1 1178 0.20707070707070707 198 41 "UPF0029 family protein" +BW25113_3848__3prime yigZ__3prime 0 4026467 4026664 1 1017 0.20202020202020202 198 40 "UPF0029 family protein" +BW25113_3849 trkH 0 4026505 4027956 1 5826 0.174931129476584 1452 254 "potassium transporter" +BW25113_3849__5prime trkH__5prime 0 4026307 4026504 1 163 0.05555555555555555 198 11 "potassium transporter" +BW25113_3849__3prime trkH__3prime 0 4027957 4028154 1 38 0.010101010101010102 198 2 "potassium transporter" +BW25113_3850 hemG 0 4027968 4028513 1 0 0.0 546 0 "protoporphyrin oxidase and flavoprotein" +BW25113_3850__5prime hemG__5prime 0 4027770 4027967 1 549 0.19696969696969696 198 39 "protoporphyrin oxidase and flavoprotein" +BW25113_3850__3prime hemG__3prime 0 4028514 4028711 1 138 0.06565656565656566 198 13 "protoporphyrin oxidase and flavoprotein" +BW25113_3851 rrsA 0 4028891 4030432 1 1051 0.07782101167315175 1542 120 "16S ribosomal RNA of rrnA operon" +BW25113_3851__5prime rrsA__5prime 0 4028693 4028890 1 30 0.015151515151515152 198 3 "16S ribosomal RNA of rrnA operon" +BW25113_3851__3prime rrsA__3prime 0 4030433 4030630 1 31 0.025252525252525252 198 5 "16S ribosomal RNA of rrnA operon" +BW25113_3852 ileT 0 4030501 4030577 1 0 0.0 77 0 "tRNA-Ile" +BW25113_3852__5prime ileT__5prime 0 4030303 4030500 1 50 0.04040404040404041 198 8 "tRNA-Ile" +BW25113_3852__3prime ileT__3prime 0 4030578 4030775 1 95 0.045454545454545456 198 9 "tRNA-Ile" +BW25113_3853 alaT 0 4030620 4030695 1 90 0.10526315789473684 76 8 "tRNA-Ala" +BW25113_3853__5prime alaT__5prime 0 4030422 4030619 1 24 0.020202020202020204 198 4 "tRNA-Ala" +BW25113_3853__3prime alaT__3prime 0 4030696 4030893 1 24 0.020202020202020204 198 4 "tRNA-Ala" +BW25113_3854 rrlA 0 4030879 4033783 1 1980 0.07676419965576592 2905 223 "23S ribosomal RNA of rrnA operon" +BW25113_3854__5prime rrlA__5prime 0 4030681 4030878 1 92 0.045454545454545456 198 9 "23S ribosomal RNA of rrnA operon" +BW25113_3854__3prime rrlA__3prime 0 4033784 4033981 1 96 0.07575757575757576 198 15 "23S ribosomal RNA of rrnA operon" +BW25113_3855 rrfA 0 4033877 4033996 1 41 0.05 120 6 "5S ribosomal RNA of rrnA operon" +BW25113_3855__5prime rrfA__5prime 0 4033679 4033876 1 87 0.06060606060606061 198 12 "5S ribosomal RNA of rrnA operon" +BW25113_3855__3prime rrfA__3prime 0 4033997 4034194 1 572 0.1111111111111111 198 22 "5S ribosomal RNA of rrnA operon" +4034223_4034259 4034223_4034259 0 4034224 4034259 1 59 0.08333333333333333 36 3 "4034223_4034259" +4034223_4034259__5prime 4034223_4034259__5prime 0 4034026 4034223 1 572 0.1111111111111111 198 22 "4034223_4034259" +4034223_4034259__3prime 4034223_4034259__3prime 0 4034260 4034457 1 235 0.09090909090909091 198 18 "4034223_4034259" +BW25113_3856 mobB 0 4034266 4034793 -1 890 0.10037878787878787 528 53 "molybdopterin-guanine dinucleotide biosynthesis protein B" +BW25113_3856__5prime mobB__5prime 0 4034794 4034991 -1 256 0.07575757575757576 198 15 "molybdopterin-guanine dinucleotide biosynthesis protein B" +BW25113_3856__3prime mobB__3prime 0 4034068 4034265 -1 548 0.10606060606060606 198 21 "molybdopterin-guanine dinucleotide biosynthesis protein B" +BW25113_3857 mobA 0 4034775 4035359 -1 753 0.07521367521367521 585 44 "molybdopterin-guanine dinucleotide synthase" +BW25113_3857__5prime mobA__5prime 0 4035360 4035557 -1 440 0.1717171717171717 198 34 "molybdopterin-guanine dinucleotide synthase" +BW25113_3857__3prime mobA__3prime 0 4034577 4034774 -1 348 0.12121212121212122 198 24 "molybdopterin-guanine dinucleotide synthase" +BW25113_3858 yihD 0 4035429 4035698 1 388 0.1 270 27 "DUF1040 protein YihD" +BW25113_3858__5prime yihD__5prime 0 4035231 4035428 1 203 0.08080808080808081 198 16 "DUF1040 protein YihD" +BW25113_3858__3prime yihD__3prime 0 4035699 4035896 1 651 0.20707070707070707 198 41 "DUF1040 protein YihD" +BW25113_3859 srkA 0 4035775 4036761 1 2364 0.12158054711246201 987 120 "stress response kinase A; MazF antagonist; Thr/Ser kinase involved in Cpx stress response" +BW25113_3859__5prime srkA__5prime 0 4035577 4035774 1 389 0.11616161616161616 198 23 "stress response kinase A; MazF antagonist; Thr/Ser kinase involved in Cpx stress response" +BW25113_3859__3prime srkA__3prime 0 4036762 4036959 1 444 0.18181818181818182 198 36 "stress response kinase A; MazF antagonist; Thr/Ser kinase involved in Cpx stress response" +BW25113_3860 dsbA 0 4036778 4037404 1 3175 0.23604465709728867 627 148 "periplasmic protein disulfide isomerase I" +BW25113_3860__5prime dsbA__5prime 0 4036580 4036777 1 698 0.11616161616161616 198 23 "periplasmic protein disulfide isomerase I" +BW25113_3860__3prime dsbA__3prime 0 4037405 4037602 1 648 0.15151515151515152 198 30 "periplasmic protein disulfide isomerase I" +BW25113_3861 yihF 0 4037559 4038989 1 20612 0.3326345213137666 1431 476 "DUF945 family protein" +BW25113_3861__5prime yihF__5prime 0 4037361 4037558 1 337 0.09595959595959595 198 19 "DUF945 family protein" +BW25113_3861__3prime yihF__3prime 0 4038990 4039187 1 2251 0.3888888888888889 198 77 "DUF945 family protein" +BW25113_3862 yihG 0 4039030 4039962 -1 9652 0.3204715969989282 933 299 "inner membrane protein and inner membrane acyltransferase" +BW25113_3862__5prime yihG__5prime 0 4039963 4040160 -1 1399 0.10606060606060606 198 21 "inner membrane protein and inner membrane acyltransferase" +BW25113_3862__3prime yihG__3prime 0 4038832 4039029 -1 2387 0.3434343434343434 198 68 "inner membrane protein and inner membrane acyltransferase" +BW25113_3863 polA 0 4040326 4043112 1 669 0.02045209903121636 2787 57 '"fused DNA polymerase I 5''->3'' polymerase/3''->5'' exonuclease/5''->3'' exonuclease"' +BW25113_3863__5prime polA__5prime 0 4040128 4040325 1 228 0.09090909090909091 198 18 '"fused DNA polymerase I 5''->3'' polymerase/3''->5'' exonuclease/5''->3'' exonuclease"' +BW25113_3863__3prime polA__3prime 0 4043113 4043310 1 87 0.050505050505050504 198 10 '"fused DNA polymerase I 5''->3'' polymerase/3''->5'' exonuclease/5''->3'' exonuclease"' +BW25113_3864 spf 0 4043259 4043367 1 66 0.06422018348623854 109 7 "Spot 42 sRNA antisense regulator of galK translation and Hfq-dependent" +BW25113_3864__5prime spf__5prime 0 4043061 4043258 1 130 0.0707070707070707 198 14 "Spot 42 sRNA antisense regulator of galK translation and Hfq-dependent" +BW25113_3864__3prime spf__3prime 0 4043368 4043565 1 469 0.09595959595959595 198 19 "Spot 42 sRNA antisense regulator of galK translation and Hfq-dependent" +4043392_4043471 4043392_4043471 0 4043393 4043471 1 281 0.12658227848101267 79 10 "4043392_4043471" +4043392_4043471__5prime 4043392_4043471__5prime 0 4043195 4043392 1 73 0.04040404040404041 198 8 "4043392_4043471" +4043392_4043471__3prime 4043392_4043471__3prime 0 4043472 4043669 1 188 0.045454545454545456 198 9 "4043392_4043471" +BW25113_3865 yihA 0 4043493 4044125 -1 123 0.01263823064770932 633 8 "cell division GTP-binding protein" +BW25113_3865__5prime yihA__5prime 0 4044126 4044323 -1 110 0.030303030303030304 198 6 "cell division GTP-binding protein" +BW25113_3865__3prime yihA__3prime 0 4043295 4043492 -1 377 0.0707070707070707 198 14 "cell division GTP-binding protein" +BW25113_4457 csrC 0 4044396 4044640 1 889 0.1469387755102041 245 36 "CsrC sRNA sequesters CsrA and a carbon flux regulator" +BW25113_4457__5prime csrC__5prime 0 4044198 4044395 1 49 0.030303030303030304 198 6 "CsrC sRNA sequesters CsrA and a carbon flux regulator" +BW25113_4457__3prime csrC__3prime 0 4044641 4044838 1 356 0.09595959595959595 198 19 "CsrC sRNA sequesters CsrA and a carbon flux regulator" +BW25113_3866 yihI 0 4044707 4045216 1 1840 0.1450980392156863 510 74 "activator of Der GTPase" +BW25113_3866__5prime yihI__5prime 0 4044509 4044706 1 532 0.13636363636363635 198 27 "activator of Der GTPase" +BW25113_3866__3prime yihI__3prime 0 4045217 4045414 1 347 0.07575757575757576 198 15 "activator of Der GTPase" +BW25113_3867 hemN 0 4045405 4046778 1 5389 0.13755458515283842 1374 189 "coproporphyrinogen III oxidase and SAM and NAD(P)H dependent and oxygen-independent" +BW25113_3867__5prime hemN__5prime 0 4045207 4045404 1 215 0.0707070707070707 198 14 "coproporphyrinogen III oxidase and SAM and NAD(P)H dependent and oxygen-independent" +BW25113_3867__3prime hemN__3prime 0 4046779 4046976 1 730 0.20202020202020202 198 40 "coproporphyrinogen III oxidase and SAM and NAD(P)H dependent and oxygen-independent" +4046889_4046973 4046889_4046973 0 4046890 4046973 1 286 0.19047619047619047 84 16 "4046889_4046973" +4046889_4046973__5prime 4046889_4046973__5prime 0 4046692 4046889 1 413 0.11616161616161616 198 23 "4046889_4046973" +4046889_4046973__3prime 4046889_4046973__3prime 0 4046974 4047171 1 674 0.13636363636363635 198 27 "4046889_4046973" +BW25113_4686 yshB 0 4047007 4047117 -1 463 0.12612612612612611 111 14 "uncharacterized protein" +BW25113_4686__5prime yshB__5prime 0 4047118 4047315 -1 470 0.15656565656565657 198 31 "uncharacterized protein" +BW25113_4686__3prime yshB__3prime 0 4046809 4047006 -1 718 0.17676767676767677 198 35 "uncharacterized protein" +BW25113_3868 glnG 0 4047229 4048638 -1 3258 0.11205673758865248 1410 158 "fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein" +BW25113_3868__5prime glnG__5prime 0 4048639 4048836 -1 445 0.11616161616161616 198 23 "fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein" +BW25113_3868__3prime glnG__3prime 0 4047031 4047228 -1 564 0.14646464646464646 198 29 "fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein" +BW25113_3869 glnL 0 4048650 4049699 -1 2492 0.11142857142857143 1050 117 "sensory histidine kinase in two-component regulatory system with GlnG" +BW25113_3869__5prime glnL__5prime 0 4049700 4049897 -1 916 0.20707070707070707 198 41 "sensory histidine kinase in two-component regulatory system with GlnG" +BW25113_3869__3prime glnL__3prime 0 4048452 4048649 -1 1025 0.18181818181818182 198 36 "sensory histidine kinase in two-component regulatory system with GlnG" +4049830_4049915 4049830_4049915 0 4049831 4049915 1 566 0.21176470588235294 85 18 "4049830_4049915" +4049830_4049915__5prime 4049830_4049915__5prime 0 4049633 4049830 1 503 0.1717171717171717 198 34 "4049830_4049915" +4049830_4049915__3prime 4049830_4049915__3prime 0 4049916 4050113 1 452 0.0707070707070707 198 14 "4049830_4049915" +BW25113_3870 glnA 0 4049985 4051394 -1 912 0.03971631205673759 1410 56 "glutamine synthetase" +BW25113_3870__5prime glnA__5prime 0 4051395 4051592 -1 386 0.08585858585858586 198 17 "glutamine synthetase" +BW25113_3870__3prime glnA__3prime 0 4049787 4049984 -1 921 0.19696969696969696 198 39 "glutamine synthetase" +BW25113_3871 typA 0 4051767 4053590 1 7484 0.17653508771929824 1824 322 "GTP-binding protein" +BW25113_3871__5prime typA__5prime 0 4051569 4051766 1 546 0.10606060606060606 198 21 "GTP-binding protein" +BW25113_3871__3prime typA__3prime 0 4053591 4053788 1 687 0.10606060606060606 198 21 "GTP-binding protein" +BW25113_3872 yihL 0 4053807 4054517 1 4692 0.2714486638537271 711 193 "putative DNA-binding transcriptional regulator" +BW25113_3872__5prime yihL__5prime 0 4053609 4053806 1 687 0.10606060606060606 198 21 "putative DNA-binding transcriptional regulator" +BW25113_3872__3prime yihL__3prime 0 4054518 4054715 1 1535 0.2676767676767677 198 53 "putative DNA-binding transcriptional regulator" +BW25113_3873 yihM 0 4054525 4055505 1 18439 0.42201834862385323 981 414 "putative sugar phosphate isomerase" +BW25113_3873__5prime yihM__5prime 0 4054327 4054524 1 2383 0.4696969696969697 198 93 "putative sugar phosphate isomerase" +BW25113_3873__3prime yihM__3prime 0 4055506 4055703 1 1482 0.2828282828282828 198 56 "putative sugar phosphate isomerase" +BW25113_3874 yihN 0 4055607 4056872 1 54505 0.5134281200631912 1266 650 "MFS transporter family protein" +BW25113_3874__5prime yihN__5prime 0 4055409 4055606 1 2288 0.3939393939393939 198 78 "MFS transporter family protein" +BW25113_3874__3prime yihN__3prime 0 4056873 4057070 1 14703 0.6868686868686869 198 136 "MFS transporter family protein" +4056878_4056953 4056878_4056953 0 4056879 4056953 1 1844 0.6533333333333333 75 49 "4056878_4056953" +4056878_4056953__5prime 4056878_4056953__5prime 0 4056681 4056878 1 9814 0.5606060606060606 198 111 "4056878_4056953" +4056878_4056953__3prime 4056878_4056953__3prime 0 4056954 4057151 1 13873 0.6313131313131313 198 125 "4056878_4056953" +BW25113_3875 ompL 0 4056963 4057655 -1 29864 0.4704184704184704 693 326 "outer membrane porin L" +BW25113_3875__5prime ompL__5prime 0 4057656 4057853 -1 2192 0.37373737373737376 198 74 "outer membrane porin L" +BW25113_3875__3prime ompL__3prime 0 4056765 4056962 -1 6949 0.6060606060606061 198 120 "outer membrane porin L" +BW25113_3876 yihO 0 4057723 4059126 -1 40528 0.4594017094017094 1404 645 "putative transporter" +BW25113_3876__5prime yihO__5prime 0 4059127 4059324 -1 2602 0.41414141414141414 198 82 "putative transporter" +BW25113_3876__3prime yihO__3prime 0 4057525 4057722 -1 9492 0.4444444444444444 198 88 "putative transporter" +BW25113_3877 yihP 0 4059169 4060554 -1 5514 0.15728715728715728 1386 218 "putative transporter" +BW25113_3877__5prime yihP__5prime 0 4060555 4060752 -1 876 0.1717171717171717 198 34 "putative transporter" +BW25113_3877__3prime yihP__3prime 0 4058971 4059168 -1 2554 0.4292929292929293 198 85 "putative transporter" +BW25113_3878 yihQ 0 4060600 4062636 -1 11704 0.20176730486008837 2037 411 "alpha-glucosidase" +BW25113_3878__5prime yihQ__5prime 0 4062637 4062834 -1 1722 0.19696969696969696 198 39 "alpha-glucosidase" +BW25113_3878__3prime yihQ__3prime 0 4060402 4060599 -1 663 0.1111111111111111 198 22 "alpha-glucosidase" +BW25113_3879 yihR 0 4062835 4063761 -1 16974 0.36893203883495146 927 342 "mutarotase superfamily protein and YihR family" +BW25113_3879__5prime yihR__5prime 0 4063762 4063959 -1 951 0.2222222222222222 198 44 "mutarotase superfamily protein and YihR family" +BW25113_3879__3prime yihR__3prime 0 4062637 4062834 -1 1722 0.19696969696969696 198 39 "mutarotase superfamily protein and YihR family" +BW25113_3880 yihS 0 4063875 4065116 -1 4003 0.13848631239935588 1242 172 "aldose-ketose isomerase; D-mannose isomerase" +BW25113_3880__5prime yihS__5prime 0 4065117 4065314 -1 283 0.08080808080808081 198 16 "aldose-ketose isomerase; D-mannose isomerase" +BW25113_3880__3prime yihS__3prime 0 4063677 4063874 -1 1803 0.30303030303030304 198 60 "aldose-ketose isomerase; D-mannose isomerase" +4064419_4064500 4064419_4064500 0 4064420 4064500 1 470 0.09876543209876543 81 8 "4064419_4064500" +4064419_4064500__5prime 4064419_4064500__5prime 0 4064222 4064419 1 885 0.16161616161616163 198 32 "4064419_4064500" +4064419_4064500__3prime 4064419_4064500__3prime 0 4064501 4064698 1 432 0.08585858585858586 198 17 "4064419_4064500" +BW25113_3881 yihT 0 4065133 4066011 -1 1950 0.11035267349260523 879 97 "putative aldolase" +BW25113_3881__5prime yihT__5prime 0 4066012 4066209 -1 995 0.15151515151515152 198 30 "putative aldolase" +BW25113_3881__3prime yihT__3prime 0 4064935 4065132 -1 384 0.08080808080808081 198 16 "putative aldolase" +BW25113_3882 yihU 0 4066035 4066931 -1 2366 0.11482720178372352 897 103 "gamma-hydroxybutyrate dehydrogenase and NADH-dependent" +BW25113_3882__5prime yihU__5prime 0 4066932 4067129 -1 200 0.050505050505050504 198 10 "gamma-hydroxybutyrate dehydrogenase and NADH-dependent" +BW25113_3882__3prime yihU__3prime 0 4065837 4066034 -1 782 0.15656565656565657 198 31 "gamma-hydroxybutyrate dehydrogenase and NADH-dependent" +BW25113_3883 yihV 0 4067099 4067995 1 3125 0.1505016722408027 897 135 "putative sugar kinase" +BW25113_3883__5prime yihV__5prime 0 4066901 4067098 1 88 0.025252525252525252 198 5 "putative sugar kinase" +BW25113_3883__3prime yihV__3prime 0 4067996 4068193 1 330 0.09595959595959595 198 19 "putative sugar kinase" +BW25113_3884 yihW 0 4068029 4068814 1 2114 0.10687022900763359 786 84 "DeoR family putative transcriptional regulator" +BW25113_3884__5prime yihW__5prime 0 4067831 4068028 1 406 0.06565656565656566 198 13 "DeoR family putative transcriptional regulator" +BW25113_3884__3prime yihW__3prime 0 4068815 4069012 1 253 0.10606060606060606 198 21 "DeoR family putative transcriptional regulator" +BW25113_3885 yihX 0 4068913 4069512 1 1497 0.1 600 60 "alpha-D-Glucose-1-P phosphatase and anomer-specific" +BW25113_3885__5prime yihX__5prime 0 4068715 4068912 1 224 0.10101010101010101 198 20 "alpha-D-Glucose-1-P phosphatase and anomer-specific" +BW25113_3885__3prime yihX__3prime 0 4069513 4069710 1 1114 0.21717171717171718 198 43 "alpha-D-Glucose-1-P phosphatase and anomer-specific" +BW25113_3886 yihY 0 4069506 4070378 1 2925 0.15578465063001146 873 136 "BrkB family putative transporter and inner membrane protein" +BW25113_3886__5prime yihY__5prime 0 4069308 4069505 1 120 0.030303030303030304 198 6 "BrkB family putative transporter and inner membrane protein" +BW25113_3886__3prime yihY__3prime 0 4070379 4070576 1 393 0.09595959595959595 198 19 "BrkB family putative transporter and inner membrane protein" +BW25113_3887 dtd 0 4070375 4070812 1 1047 0.1278538812785388 438 56 "D-tyr-tRNA(Tyr) deacylase" +BW25113_3887__5prime dtd__5prime 0 4070177 4070374 1 544 0.15151515151515152 198 30 "D-tyr-tRNA(Tyr) deacylase" +BW25113_3887__3prime dtd__3prime 0 4070813 4071010 1 743 0.13636363636363635 198 27 "D-tyr-tRNA(Tyr) deacylase" +BW25113_3888 yiiD 0 4070809 4071798 1 6619 0.21414141414141413 990 212 "putative acetyltransferase" +BW25113_3888__5prime yiiD__5prime 0 4070611 4070808 1 557 0.17676767676767677 198 35 "putative acetyltransferase" +BW25113_3888__3prime yiiD__3prime 0 4071799 4071996 1 3100 0.3888888888888889 198 77 "putative acetyltransferase" +BW25113_3889 yiiE 0 4072657 4072869 1 5644 0.49295774647887325 213 105 "CopG family putative transcriptional regulator" +BW25113_3889__5prime yiiE__5prime 0 4072459 4072656 1 189 0.07575757575757576 198 15 "CopG family putative transcriptional regulator" +BW25113_3889__3prime yiiE__3prime 0 4072870 4073067 1 273 0.08585858585858586 198 17 "CopG family putative transcriptional regulator" +BW25113_3890 yiiF 0 4073111 4073329 1 4362 0.4383561643835616 219 96 "putative thymol sensitivity protein and CopG family putative transcriptional regulator" +BW25113_3890__5prime yiiF__5prime 0 4072913 4073110 1 726 0.1414141414141414 198 28 "putative thymol sensitivity protein and CopG family putative transcriptional regulator" +BW25113_3890__3prime yiiF__3prime 0 4073330 4073527 1 739 0.18181818181818182 198 36 "putative thymol sensitivity protein and CopG family putative transcriptional regulator" +4073379_4073477 4073379_4073477 0 4073380 4073477 1 310 0.1326530612244898 98 13 "4073379_4073477" +4073379_4073477__5prime 4073379_4073477__5prime 0 4073182 4073379 1 3236 0.398989898989899 198 79 "4073379_4073477" +4073379_4073477__3prime 4073379_4073477__3prime 0 4073478 4073675 1 1361 0.26262626262626265 198 52 "4073379_4073477" +BW25113_3891 fdhE 0 4073659 4074588 -1 4245 0.19032258064516128 930 177 "formate dehydrogenase formation protein" +BW25113_3891__5prime fdhE__5prime 0 4074589 4074786 -1 568 0.14646464646464646 198 29 "formate dehydrogenase formation protein" +BW25113_3891__3prime fdhE__3prime 0 4073461 4073658 -1 1321 0.25757575757575757 198 51 "formate dehydrogenase formation protein" +BW25113_3892 fdoI 0 4074585 4075220 -1 1728 0.13522012578616352 636 86 "formate dehydrogenase-O and cytochrome b556 subunit" +BW25113_3892__5prime fdoI__5prime 0 4075221 4075418 -1 924 0.15151515151515152 198 30 "formate dehydrogenase-O and cytochrome b556 subunit" +BW25113_3892__3prime fdoI__3prime 0 4074387 4074584 -1 547 0.14646464646464646 198 29 "formate dehydrogenase-O and cytochrome b556 subunit" +BW25113_3893 fdoH 0 4075217 4076119 -1 5344 0.19712070874861573 903 178 "formate dehydrogenase-O and Fe-S subunit" +BW25113_3893__5prime fdoH__5prime 0 4076120 4076317 -1 444 0.09090909090909091 198 18 "formate dehydrogenase-O and Fe-S subunit" +BW25113_3893__3prime fdoH__3prime 0 4075019 4075216 -1 658 0.1717171717171717 198 34 "formate dehydrogenase-O and Fe-S subunit" +BW25113_3894 fdoG 0 4076132 4079182 -1 11761 0.16486397902327105 3051 503 "formate dehydrogenase-O and large subunit" +BW25113_3894__5prime fdoG__5prime 0 4079183 4079380 -1 1010 0.15656565656565657 198 31 "formate dehydrogenase-O and large subunit" +BW25113_3894__3prime fdoG__3prime 0 4075934 4076131 -1 762 0.1111111111111111 198 22 "formate dehydrogenase-O and large subunit" +BW25113_3895 fdhD 0 4079376 4080209 1 5628 0.21223021582733814 834 177 "formate dehydrogenase formation protein" +BW25113_3895__5prime fdhD__5prime 0 4079178 4079375 1 1010 0.15656565656565657 198 31 "formate dehydrogenase formation protein" +BW25113_3895__3prime fdhD__3prime 0 4080210 4080407 1 481 0.09595959595959595 198 19 "formate dehydrogenase formation protein" +BW25113_3896 yiiG 0 4080362 4081417 1 26935 0.42329545454545453 1056 447 "DUF3829 family lipoprotein" +BW25113_3896__5prime yiiG__5prime 0 4080164 4080361 1 1458 0.10101010101010101 198 20 "DUF3829 family lipoprotein" +BW25113_3896__3prime yiiG__3prime 0 4081418 4081615 1 6866 0.494949494949495 198 98 "DUF3829 family lipoprotein" +4081440_4081461 4081440_4081461 0 4081441 4081461 1 1047 0.7619047619047619 21 16 "4081440_4081461" +4081440_4081461__5prime 4081440_4081461__5prime 0 4081243 4081440 1 7050 0.5656565656565656 198 112 "4081440_4081461" +4081440_4081461__3prime 4081440_4081461__3prime 0 4081462 4081659 1 6396 0.4898989898989899 198 97 "4081440_4081461" +BW25113_3897 frvR 0 4081467 4083215 -1 27083 0.3653516295025729 1749 639 "putative frv operon regulator; contains a PTS EIIA domain" +BW25113_3897__5prime frvR__5prime 0 4083216 4083413 -1 615 0.15656565656565657 198 31 "putative frv operon regulator; contains a PTS EIIA domain" +BW25113_3897__3prime frvR__3prime 0 4081269 4081466 -1 8207 0.6313131313131313 198 125 "putative frv operon regulator; contains a PTS EIIA domain" +BW25113_3898 frvX 0 4083215 4084285 -1 3254 0.13165266106442577 1071 141 "putative peptidase" +BW25113_3898__5prime frvX__5prime 0 4084286 4084483 -1 448 0.09595959595959595 198 19 "putative peptidase" +BW25113_3898__3prime frvX__3prime 0 4083017 4083214 -1 905 0.10101010101010101 198 20 "putative peptidase" +BW25113_3899 frvB 0 4084275 4085726 -1 3621 0.12258953168044077 1452 178 "putative PTS enzyme and IIB component/IIC component" +BW25113_3899__5prime frvB__5prime 0 4085727 4085924 -1 1289 0.2777777777777778 198 55 "putative PTS enzyme and IIB component/IIC component" +BW25113_3899__3prime frvB__3prime 0 4084077 4084274 -1 879 0.16666666666666666 198 33 "putative PTS enzyme and IIB component/IIC component" +BW25113_3900 frvA 0 4085737 4086183 -1 6897 0.3982102908277405 447 178 "putative enzyme IIA component of PTS" +BW25113_3900__5prime frvA__5prime 0 4086184 4086381 -1 1447 0.2727272727272727 198 54 "putative enzyme IIA component of PTS" +BW25113_3900__3prime frvA__3prime 0 4085539 4085736 -1 604 0.20202020202020202 198 40 "putative enzyme IIA component of PTS" +BW25113_3901 rhaM 0 4086484 4086798 -1 4900 0.3619047619047619 315 114 "L-rhamnose mutarotase" +BW25113_3901__5prime rhaM__5prime 0 4086799 4086996 -1 1021 0.17676767676767677 198 35 "L-rhamnose mutarotase" +BW25113_3901__3prime rhaM__3prime 0 4086286 4086483 -1 904 0.1717171717171717 198 34 "L-rhamnose mutarotase" +BW25113_3902 rhaD 0 4086808 4087350 -1 2016 0.1141804788213628 543 62 "4086807_4087350" +BW25113_3902__5prime rhaD__5prime 0 4087351 4087548 -1 241 0.09090909090909091 198 18 "4086807_4087350" +BW25113_3902__3prime rhaD__3prime 0 4086610 4086807 -1 2727 0.3333333333333333 198 66 "4086807_4087350" +4087129_4087130 4087129_4087130 0 4087130 4087130 1 0 0.0 1 0 "4087129_4087130" +4087129_4087130__5prime 4087129_4087130__5prime 0 4086932 4087129 1 547 0.08585858585858586 198 17 "4087129_4087130" +4087129_4087130__3prime 4087129_4087130__3prime 0 4087131 4087328 1 786 0.1111111111111111 198 22 "4087129_4087130" +4087350_4087379 4087350_4087379 0 4087351 4087379 1 47 0.1724137931034483 29 5 "4087350_4087379" +4087350_4087379__5prime 4087350_4087379__5prime 0 4087153 4087350 1 551 0.08080808080808081 198 16 "4087350_4087379" +4087350_4087379__3prime 4087350_4087379__3prime 0 4087380 4087577 1 194 0.06565656565656566 198 13 "4087350_4087379" +BW25113_3905 rhaS 0 4087664 4088500 1 2905 0.14336917562724014 837 120 "transcriptional activator of rhaBAD and rhaT" +BW25113_3905__5prime rhaS__5prime 0 4087466 4087663 1 161 0.06060606060606061 198 12 "transcriptional activator of rhaBAD and rhaT" +BW25113_3905__3prime rhaS__3prime 0 4088501 4088698 1 207 0.0707070707070707 198 14 "transcriptional activator of rhaBAD and rhaT" +BW25113_3906 rhaR 0 4088574 4089422 1 2277 0.10954063604240283 849 93 "transcriptional activator of rhaSR" +BW25113_3906__5prime rhaR__5prime 0 4088376 4088573 1 331 0.0707070707070707 198 14 "transcriptional activator of rhaSR" +BW25113_3906__3prime rhaR__3prime 0 4089423 4089620 1 1574 0.3434343434343434 198 68 "transcriptional activator of rhaSR" +BW25113_3907 rhaT 0 4089419 4090453 -1 3254 0.15072463768115943 1035 156 "L-rhamnose:proton symporter" +BW25113_3907__5prime rhaT__5prime 0 4090454 4090651 -1 82 0.020202020202020204 198 4 "L-rhamnose:proton symporter" +BW25113_3907__3prime rhaT__3prime 0 4089221 4089418 -1 819 0.11616161616161616 198 23 "L-rhamnose:proton symporter" +BW25113_3908 sodA 0 4090738 4091358 1 2730 0.16908212560386474 621 105 "superoxide dismutase and Mn" +BW25113_3908__5prime sodA__5prime 0 4090540 4090737 1 71 0.030303030303030304 198 6 "superoxide dismutase and Mn" +BW25113_3908__3prime sodA__3prime 0 4091359 4091556 1 230 0.050505050505050504 198 10 "superoxide dismutase and Mn" +BW25113_3909 kdgT 0 4091618 4092601 1 3031 0.10975609756097561 984 108 "2-keto-3-deoxy-D-gluconate transporter" +BW25113_3909__5prime kdgT__5prime 0 4091420 4091617 1 72 0.04040404040404041 198 8 "2-keto-3-deoxy-D-gluconate transporter" +BW25113_3909__3prime kdgT__3prime 0 4092602 4092799 1 1088 0.2474747474747475 198 49 "2-keto-3-deoxy-D-gluconate transporter" +4092623_4092649 4092623_4092649 0 4092624 4092649 1 415 0.4230769230769231 26 11 "4092623_4092649" +4092623_4092649__5prime 4092623_4092649__5prime 0 4092426 4092623 1 436 0.08585858585858586 198 17 "4092623_4092649" +4092623_4092649__3prime 4092623_4092649__3prime 0 4092650 4092847 1 981 0.22727272727272727 198 45 "4092623_4092649" +BW25113_3910 yiiM 0 4092750 4093424 1 2507 0.1688888888888889 675 114 "6-N-hydroxylaminopurine resistance protein" +BW25113_3910__5prime yiiM__5prime 0 4092552 4092749 1 741 0.16666666666666666 198 33 "6-N-hydroxylaminopurine resistance protein" +BW25113_3910__3prime yiiM__3prime 0 4093425 4093622 1 1855 0.26262626262626265 198 52 "6-N-hydroxylaminopurine resistance protein" +4093434_4093518 4093434_4093518 0 4093435 4093518 1 813 0.27380952380952384 84 23 "4093434_4093518" +4093434_4093518__5prime 4093434_4093518__5prime 0 4093237 4093434 1 459 0.10101010101010101 198 20 "4093434_4093518" +4093434_4093518__3prime 4093434_4093518__3prime 0 4093519 4093716 1 1673 0.2474747474747475 198 49 "4093434_4093518" +BW25113_3911 cpxA 0 4093530 4094903 -1 6744 0.19213973799126638 1374 264 "sensory histidine kinase in two-component regulatory system with CpxR" +BW25113_3911__5prime cpxA__5prime 0 4094904 4095101 -1 627 0.1414141414141414 198 28 "sensory histidine kinase in two-component regulatory system with CpxR" +BW25113_3911__3prime cpxA__3prime 0 4093332 4093529 -1 1005 0.16666666666666666 198 33 "sensory histidine kinase in two-component regulatory system with CpxR" +BW25113_3912 cpxR 0 4094900 4095598 -1 3035 0.20457796852646637 699 143 "response regulator in two-component regulatory system with CpxA" +BW25113_3912__5prime cpxR__5prime 0 4095599 4095796 -1 728 0.1919191919191919 198 38 "response regulator in two-component regulatory system with CpxA" +BW25113_3912__3prime cpxR__3prime 0 4094702 4094899 -1 620 0.13131313131313133 198 26 "response regulator in two-component regulatory system with CpxA" +BW25113_4484 cpxP 0 4095748 4096248 1 2062 0.23552894211576847 501 118 "inhibitor of the cpx response; periplasmic adaptor protein" +BW25113_4484__5prime cpxP__5prime 0 4095550 4095747 1 528 0.1111111111111111 198 22 "inhibitor of the cpx response; periplasmic adaptor protein" +BW25113_4484__3prime cpxP__3prime 0 4096249 4096446 1 678 0.15151515151515152 198 30 "inhibitor of the cpx response; periplasmic adaptor protein" +BW25113_3915 fieF 0 4096397 4097299 1 3465 0.1638981173864895 903 148 "ferrous iron and zinc transporter" +BW25113_3915__5prime fieF__5prime 0 4096199 4096396 1 870 0.22727272727272727 198 45 "ferrous iron and zinc transporter" +BW25113_3915__3prime fieF__3prime 0 4097300 4097497 1 321 0.09090909090909091 198 18 "ferrous iron and zinc transporter" +BW25113_3916 pfkA 0 4097480 4098442 1 2932 0.15160955347871236 963 146 "6-phosphofructokinase I" +BW25113_3916__5prime pfkA__5prime 0 4097282 4097479 1 438 0.11616161616161616 198 23 "6-phosphofructokinase I" +BW25113_3916__3prime pfkA__3prime 0 4098443 4098640 1 178 0.050505050505050504 198 10 "6-phosphofructokinase I" +4098498_4098596 4098498_4098596 0 4098499 4098596 1 103 0.02040816326530612 98 2 "4098498_4098596" +4098498_4098596__5prime 4098498_4098596__5prime 0 4098301 4098498 1 793 0.14646464646464646 198 29 "4098498_4098596" +4098498_4098596__3prime 4098498_4098596__3prime 0 4098597 4098794 1 648 0.10606060606060606 198 21 "4098498_4098596" +BW25113_3917 sbp 0 4098762 4099751 1 2906 0.1606060606060606 990 159 "sulfate transporter subunit" +BW25113_3917__5prime sbp__5prime 0 4098564 4098761 1 469 0.0707070707070707 198 14 "sulfate transporter subunit" +BW25113_3917__3prime sbp__3prime 0 4099752 4099949 1 367 0.08585858585858586 198 17 "sulfate transporter subunit" +BW25113_3918 cdh 0 4099858 4100613 1 1915 0.1402116402116402 756 106 "CDP-diacylglycerol phosphotidylhydrolase" +BW25113_3918__5prime cdh__5prime 0 4099660 4099857 1 247 0.10101010101010101 198 20 "CDP-diacylglycerol phosphotidylhydrolase" +BW25113_3918__3prime cdh__3prime 0 4100614 4100811 1 313 0.08080808080808081 198 16 "CDP-diacylglycerol phosphotidylhydrolase" +4100637_4100656 4100637_4100656 0 4100638 4100656 1 29 0.10526315789473684 19 2 "4100637_4100656" +4100637_4100656__5prime 4100637_4100656__5prime 0 4100440 4100637 1 458 0.15151515151515152 198 30 "4100637_4100656" +4100637_4100656__3prime 4100637_4100656__3prime 0 4100657 4100854 1 270 0.06565656565656566 198 13 "4100637_4100656" +BW25113_3919 tpiA 0 4100668 4101435 -1 480 0.04296875 768 33 "triosephosphate isomerase" +BW25113_3919__5prime tpiA__5prime 0 4101436 4101633 -1 624 0.17676767676767677 198 35 "triosephosphate isomerase" +BW25113_3919__3prime tpiA__3prime 0 4100470 4100667 -1 463 0.14646464646464646 198 29 "triosephosphate isomerase" +BW25113_3920 yiiQ 0 4101543 4102142 -1 2646 0.19166666666666668 600 115 "DUF1454 family putative periplasmic protein" +BW25113_3920__5prime yiiQ__5prime 0 4102143 4102340 -1 1296 0.22727272727272727 198 45 "DUF1454 family putative periplasmic protein" +BW25113_3920__3prime yiiQ__3prime 0 4101345 4101542 -1 402 0.1111111111111111 198 22 "DUF1454 family putative periplasmic protein" +BW25113_3921 yiiR 0 4102243 4102683 1 2761 0.2585034013605442 441 114 "DUF805 family putative inner membrane protein" +BW25113_3921__5prime yiiR__5prime 0 4102045 4102242 1 709 0.1717171717171717 198 34 "DUF805 family putative inner membrane protein" +BW25113_3921__3prime yiiR__3prime 0 4102684 4102881 1 1555 0.3181818181818182 198 63 "DUF805 family putative inner membrane protein" +BW25113_3922 yiiS 0 4102895 4103194 1 10125 0.6133333333333333 300 184 "UPF0381 family protein" +BW25113_3922__5prime yiiS__5prime 0 4102697 4102894 1 2731 0.3686868686868687 198 73 "UPF0381 family protein" +BW25113_3922__3prime yiiS__3prime 0 4103195 4103392 1 6920 0.6313131313131313 198 125 "UPF0381 family protein" +BW25113_3923 uspD 0 4103221 4103649 1 8472 0.4358974358974359 429 187 "stress-induced protein" +BW25113_3923__5prime uspD__5prime 0 4103023 4103220 1 5700 0.601010101010101 198 119 "stress-induced protein" +BW25113_3923__3prime uspD__3prime 0 4103650 4103847 1 1671 0.24242424242424243 198 48 "stress-induced protein" +BW25113_3924 fpr 0 4103654 4104400 -1 3643 0.16599732262382866 747 124 "ferredoxin-NADP reductase" +BW25113_3924__5prime fpr__5prime 0 4104401 4104598 -1 459 0.13131313131313133 198 26 "ferredoxin-NADP reductase" +BW25113_3924__3prime fpr__3prime 0 4103456 4103653 -1 2991 0.3787878787878788 198 75 "ferredoxin-NADP reductase" +BW25113_3925 glpX 0 4104497 4105507 -1 2745 0.13452027695351138 1011 136 "fructose 1 and 6-bisphosphatase II" +BW25113_3925__5prime glpX__5prime 0 4105508 4105705 -1 1884 0.2727272727272727 198 54 "fructose 1 and 6-bisphosphatase II" +BW25113_3925__3prime glpX__3prime 0 4104299 4104496 -1 1034 0.16161616161616163 198 32 "fructose 1 and 6-bisphosphatase II" +4105604_4105634 4105604_4105634 0 4105605 4105634 1 158 0.26666666666666666 30 8 "4105604_4105634" +4105604_4105634__5prime 4105604_4105634__5prime 0 4105407 4105604 1 1397 0.16161616161616163 198 32 "4105604_4105634" +4105604_4105634__3prime 4105604_4105634__3prime 0 4105635 4105832 1 766 0.15656565656565657 198 31 "4105604_4105634" +BW25113_3926 glpK 0 4105642 4107150 -1 6730 0.17826375082836315 1509 269 "glycerol kinase" +BW25113_3926__5prime glpK__5prime 0 4107151 4107348 -1 411 0.12626262626262627 198 25 "glycerol kinase" +BW25113_3926__3prime glpK__3prime 0 4105444 4105641 -1 1631 0.21717171717171718 198 43 "glycerol kinase" +BW25113_3927 glpF 0 4107173 4108018 -1 1909 0.12411347517730496 846 105 "glycerol facilitator" +BW25113_3927__5prime glpF__5prime 0 4108019 4108216 -1 329 0.06060606060606061 198 12 "glycerol facilitator" +BW25113_3927__3prime glpF__3prime 0 4106975 4107172 -1 842 0.18181818181818182 198 36 "glycerol facilitator" +BW25113_3928 zapB 0 4108443 4108688 1 1232 0.13821138211382114 246 34 "FtsZ stabilizer; septal ring assembly factor and stimulates cell division" +BW25113_3928__5prime zapB__5prime 0 4108245 4108442 1 444 0.12626262626262627 198 25 "FtsZ stabilizer; septal ring assembly factor and stimulates cell division" +BW25113_3928__3prime zapB__3prime 0 4108689 4108886 1 634 0.10606060606060606 198 21 "FtsZ stabilizer; septal ring assembly factor and stimulates cell division" +BW25113_3929 rraA 0 4108773 4109258 -1 1429 0.11934156378600823 486 58 "ribonuclease E (RNase E) inhibitor protein" +BW25113_3929__5prime rraA__5prime 0 4109259 4109456 -1 464 0.15151515151515152 198 30 "ribonuclease E (RNase E) inhibitor protein" +BW25113_3929__3prime rraA__3prime 0 4108575 4108772 -1 1252 0.11616161616161616 198 23 "ribonuclease E (RNase E) inhibitor protein" +BW25113_3930 menA 0 4109351 4110277 -1 4248 0.20819848975188782 927 193 "1 and 4-dihydroxy-2-naphthoate octaprenyltransferase" +BW25113_3930__5prime menA__5prime 0 4110278 4110475 -1 595 0.13636363636363635 198 27 "1 and 4-dihydroxy-2-naphthoate octaprenyltransferase" +BW25113_3930__3prime menA__3prime 0 4109153 4109350 -1 221 0.0707070707070707 198 14 "1 and 4-dihydroxy-2-naphthoate octaprenyltransferase" +BW25113_3931 hslU 0 4110344 4111675 -1 6637 0.15915915915915915 1332 212 "molecular chaperone and ATPase component of HslUV protease" +BW25113_3931__5prime hslU__5prime 0 4111676 4111873 -1 722 0.13636363636363635 198 27 "molecular chaperone and ATPase component of HslUV protease" +BW25113_3931__3prime hslU__3prime 0 4110146 4110343 -1 656 0.13131313131313133 198 26 "molecular chaperone and ATPase component of HslUV protease" +BW25113_3932 hslV 0 4111685 4112215 -1 2151 0.15819209039548024 531 84 "peptidase component of the HslUV protease" +BW25113_3932__5prime hslV__5prime 0 4112216 4112413 -1 951 0.17676767676767677 198 35 "peptidase component of the HslUV protease" +BW25113_3932__3prime hslV__3prime 0 4111487 4111684 -1 1166 0.18686868686868688 198 37 "peptidase component of the HslUV protease" +BW25113_3933 ftsN 0 4112308 4113267 -1 5114 0.165625 960 159 "essential cell division protein" +BW25113_3933__5prime ftsN__5prime 0 4113268 4113465 -1 628 0.16161616161616163 198 32 "essential cell division protein" +BW25113_3933__3prime ftsN__3prime 0 4112110 4112307 -1 896 0.19696969696969696 198 39 "essential cell division protein" +BW25113_3934 cytR 0 4113359 4114384 -1 2906 0.12280701754385964 1026 126 "Anti-activator for CytR-CRP nucleoside utilization regulon" +BW25113_3934__5prime cytR__5prime 0 4114385 4114582 -1 714 0.1111111111111111 198 22 "Anti-activator for CytR-CRP nucleoside utilization regulon" +BW25113_3934__3prime cytR__3prime 0 4113161 4113358 -1 490 0.13131313131313133 198 26 "Anti-activator for CytR-CRP nucleoside utilization regulon" +BW25113_3935 priA 0 4114540 4116738 -1 475 0.018644838562983174 2199 41 '"Primosome factor n'' (replication factor Y)"' +BW25113_3935__5prime priA__5prime 0 4116739 4116936 -1 613 0.11616161616161616 198 23 '"Primosome factor n'' (replication factor Y)"' +BW25113_3935__3prime priA__3prime 0 4114342 4114539 -1 717 0.1111111111111111 198 22 '"Primosome factor n'' (replication factor Y)"' +BW25113_3936 rpmE 0 4116941 4117153 1 51 0.028169014084507043 213 6 "50S ribosomal subunit protein L31" +BW25113_3936__5prime rpmE__5prime 0 4116743 4116940 1 483 0.10101010101010101 198 20 "50S ribosomal subunit protein L31" +BW25113_3936__3prime rpmE__3prime 0 4117154 4117351 1 328 0.08585858585858586 198 17 "50S ribosomal subunit protein L31" +BW25113_3937 yiiX 0 4117214 4117822 -1 2836 0.18226600985221675 609 111 "putative lipid binding hydrolase and DUF830 family protein" +BW25113_3937__5prime yiiX__5prime 0 4117823 4118020 -1 709 0.12121212121212122 198 24 "putative lipid binding hydrolase and DUF830 family protein" +BW25113_3937__3prime yiiX__3prime 0 4117016 4117213 -1 56 0.03535353535353535 198 7 "putative lipid binding hydrolase and DUF830 family protein" +4117879_4117976 4117879_4117976 0 4117880 4117976 1 143 0.061855670103092786 97 6 "4117879_4117976" +4117879_4117976__5prime 4117879_4117976__5prime 0 4117682 4117879 1 588 0.13131313131313133 198 26 "4117879_4117976" +4117879_4117976__3prime 4117879_4117976__3prime 0 4117977 4118174 1 644 0.10606060606060606 198 21 "4117879_4117976" +BW25113_3938 metJ 0 4118006 4118323 -1 606 0.0660377358490566 318 21 "transcriptional repressor and S-adenosylmethionine-binding" +BW25113_3938__5prime metJ__5prime 0 4118324 4118521 -1 714 0.10606060606060606 198 21 "transcriptional repressor and S-adenosylmethionine-binding" +BW25113_3938__3prime metJ__3prime 0 4117808 4118005 -1 748 0.12121212121212122 198 24 "transcriptional repressor and S-adenosylmethionine-binding" +BW25113_3939 metB 0 4118600 4119760 1 2928 0.1421188630490956 1161 165 "cystathionine gamma-synthase and PLP-dependent" +BW25113_3939__5prime metB__5prime 0 4118402 4118599 1 450 0.09090909090909091 198 18 "cystathionine gamma-synthase and PLP-dependent" +BW25113_3939__3prime metB__3prime 0 4119761 4119958 1 935 0.21717171717171718 198 43 "cystathionine gamma-synthase and PLP-dependent" +BW25113_3940 metL 0 4119763 4122195 1 8464 0.14221126181668722 2433 346 "Bifunctional aspartokinase/homoserine dehydrogenase 2" +BW25113_3940__5prime metL__5prime 0 4119565 4119762 1 383 0.12121212121212122 198 24 "Bifunctional aspartokinase/homoserine dehydrogenase 2" +BW25113_3940__3prime metL__3prime 0 4122196 4122393 1 217 0.04040404040404041 198 8 "Bifunctional aspartokinase/homoserine dehydrogenase 2" +4122274_4122308 4122274_4122308 0 4122275 4122308 1 128 0.11764705882352941 34 4 "4122274_4122308" +4122274_4122308__5prime 4122274_4122308__5prime 0 4122077 4122274 1 538 0.14646464646464646 198 29 "4122274_4122308" +4122274_4122308__3prime 4122274_4122308__3prime 0 4122309 4122506 1 334 0.10606060606060606 198 21 "4122274_4122308" +BW25113_3941 metF 0 4122544 4123434 1 1640 0.10213243546576879 891 91 "5 and 10-methylenetetrahydrofolate reductase" +BW25113_3941__5prime metF__5prime 0 4122346 4122543 1 416 0.13636363636363635 198 27 "5 and 10-methylenetetrahydrofolate reductase" +BW25113_3941__3prime metF__3prime 0 4123435 4123632 1 139 0.05555555555555555 198 11 "5 and 10-methylenetetrahydrofolate reductase" +BW25113_3942 katG 0 4123763 4125943 1 8551 0.1733149931224209 2181 378 "catalase-peroxidase HPI and heme b-containing" +BW25113_3942__5prime katG__5prime 0 4123565 4123762 1 1397 0.15656565656565657 198 31 "catalase-peroxidase HPI and heme b-containing" +BW25113_3942__3prime katG__3prime 0 4125944 4126141 1 852 0.14646464646464646 198 29 "catalase-peroxidase HPI and heme b-containing" +BW25113_3943 yijE 0 4126036 4126941 1 3953 0.15121412803532008 906 137 "EamA-like transporter family protein" +BW25113_3943__5prime yijE__5prime 0 4125838 4126035 1 786 0.1414141414141414 198 28 "EamA-like transporter family protein" +BW25113_3943__3prime yijE__3prime 0 4126942 4127139 1 406 0.08585858585858586 198 17 "EamA-like transporter family protein" +BW25113_3944 yijF 0 4126968 4127585 -1 1556 0.11165048543689321 618 69 "DUF1287 family protein" +BW25113_3944__5prime yijF__5prime 0 4127586 4127783 -1 220 0.05555555555555555 198 11 "DUF1287 family protein" +BW25113_3944__3prime yijF__3prime 0 4126770 4126967 -1 395 0.10101010101010101 198 20 "DUF1287 family protein" +4127716_4127814 4127716_4127814 0 4127717 4127814 1 116 0.09183673469387756 98 9 "4127716_4127814" +4127716_4127814__5prime 4127716_4127814__5prime 0 4127519 4127716 1 338 0.0707070707070707 198 14 "4127716_4127814" +4127716_4127814__3prime 4127716_4127814__3prime 0 4127815 4128012 1 747 0.16161616161616163 198 32 "4127716_4127814" +BW25113_3945 gldA 0 4127860 4128963 -1 3736 0.13405797101449277 1104 148 "glycerol dehydrogenase and NAD+ dependent; 1 and 2-propanediol:NAD+ oxidoreductase" +BW25113_3945__5prime gldA__5prime 0 4128964 4129161 -1 901 0.2222222222222222 198 44 "glycerol dehydrogenase and NAD+ dependent; 1 and 2-propanediol:NAD+ oxidoreductase" +BW25113_3945__3prime gldA__3prime 0 4127662 4127859 -1 139 0.06060606060606061 198 12 "glycerol dehydrogenase and NAD+ dependent; 1 and 2-propanediol:NAD+ oxidoreductase" +BW25113_3946 fsaB 0 4128974 4129636 -1 2340 0.16138763197586728 663 107 "fructose-6-phosphate aldolase 2" +BW25113_3946__5prime fsaB__5prime 0 4129637 4129834 -1 543 0.1111111111111111 198 22 "fructose-6-phosphate aldolase 2" +BW25113_3946__3prime fsaB__3prime 0 4128776 4128973 -1 474 0.12121212121212122 198 24 "fructose-6-phosphate aldolase 2" +BW25113_3947 frwA 0 4129648 4132149 -1 7936 0.1286970423661071 2502 322 "putative PTS enzyme and Hpr component/enzyme I component/enzyme IIA component" +BW25113_3947__5prime frwA__5prime 0 4132150 4132347 -1 649 0.10101010101010101 198 20 "putative PTS enzyme and Hpr component/enzyme I component/enzyme IIA component" +BW25113_3947__3prime frwA__3prime 0 4129450 4129647 -1 468 0.12626262626262627 198 25 "putative PTS enzyme and Hpr component/enzyme I component/enzyme IIA component" +BW25113_3949 frwC 0 4132458 4133537 1 4527 0.1824074074074074 1080 197 "putative enzyme IIC component of PTS" +BW25113_3949__5prime frwC__5prime 0 4132260 4132457 1 385 0.0707070707070707 198 14 "putative enzyme IIC component of PTS" +BW25113_3949__3prime frwC__3prime 0 4133538 4133735 1 365 0.10101010101010101 198 20 "putative enzyme IIC component of PTS" +BW25113_3950 frwB 0 4133552 4133872 1 571 0.09034267912772585 321 29 "putative enzyme IIB component of PTS" +BW25113_3950__5prime frwB__5prime 0 4133354 4133551 1 676 0.14646464646464646 198 29 "putative enzyme IIB component of PTS" +BW25113_3950__3prime frwB__3prime 0 4133873 4134070 1 784 0.14646464646464646 198 29 "putative enzyme IIB component of PTS" +BW25113_3951 pflD 0 4133923 4136220 1 8704 0.1483899042645779 2298 341 "putative glycine radical domain-containing pyruvate formate-lyase" +BW25113_3951__5prime pflD__5prime 0 4133725 4133922 1 270 0.06060606060606061 198 12 "putative glycine radical domain-containing pyruvate formate-lyase" +BW25113_3951__3prime pflD__3prime 0 4136221 4136418 1 866 0.15656565656565657 198 31 "putative glycine radical domain-containing pyruvate formate-lyase" +BW25113_3952 pflC 0 4136186 4137064 1 2739 0.14789533560864618 879 130 "putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme" +BW25113_3952__5prime pflC__5prime 0 4135988 4136185 1 930 0.18686868686868688 198 37 "putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme" +BW25113_3952__3prime pflC__3prime 0 4137065 4137262 1 571 0.16666666666666666 198 33 "putative [formate-C-acetyltransferase 2]-activating enzyme; pyruvate formate-lyase 1-activating enzyme" +BW25113_3953 frwD 0 4137066 4137407 1 942 0.15204678362573099 342 52 "putative enzyme IIB component of PTS" +BW25113_3953__5prime frwD__5prime 0 4136868 4137065 1 538 0.16161616161616163 198 32 "putative enzyme IIB component of PTS" +BW25113_3953__3prime frwD__3prime 0 4137408 4137605 1 651 0.13636363636363635 198 27 "putative enzyme IIB component of PTS" +BW25113_3954 yijO 0 4137394 4138245 -1 3334 0.15258215962441316 852 130 "AraC family putative transcriptional activator" +BW25113_3954__5prime yijO__5prime 0 4138246 4138443 -1 621 0.14646464646464646 198 29 "AraC family putative transcriptional activator" +BW25113_3954__3prime yijO__3prime 0 4137196 4137393 -1 637 0.16666666666666666 198 33 "AraC family putative transcriptional activator" +4138357_4138439 4138357_4138439 0 4138358 4138439 1 223 0.15853658536585366 82 13 "4138357_4138439" +4138357_4138439__5prime 4138357_4138439__5prime 0 4138160 4138357 1 772 0.15656565656565657 198 31 "4138357_4138439" +4138357_4138439__3prime 4138357_4138439__3prime 0 4138440 4138637 1 1365 0.16161616161616163 198 32 "4138357_4138439" +BW25113_3955 eptC 0 4138460 4140193 -1 11423 0.22722029988465975 1734 394 "LPS heptose I phosphoethanolamine transferase" +BW25113_3955__5prime eptC__5prime 0 4140194 4140391 -1 675 0.11616161616161616 198 23 "LPS heptose I phosphoethanolamine transferase" +BW25113_3955__3prime eptC__3prime 0 4138262 4138459 -1 517 0.11616161616161616 198 23 "LPS heptose I phosphoethanolamine transferase" +BW25113_3956 ppc 0 4140375 4143026 -1 10203 0.17043740573152338 2652 452 "phosphoenolpyruvate carboxylase" +BW25113_3956__5prime ppc__5prime 0 4143027 4143224 -1 960 0.15151515151515152 198 30 "phosphoenolpyruvate carboxylase" +BW25113_3956__3prime ppc__3prime 0 4140177 4140374 -1 669 0.1111111111111111 198 22 "phosphoenolpyruvate carboxylase" +4143274_4143620 4143274_4143620 0 4143275 4143620 1 1199 0.1791907514450867 346 62 "4143274_4143620" +4143274_4143620__5prime 4143274_4143620__5prime 0 4143077 4143274 1 287 0.0707070707070707 198 14 "4143274_4143620" +4143274_4143620__3prime 4143274_4143620__3prime 0 4143621 4143818 1 579 0.17676767676767677 198 35 "4143274_4143620" +BW25113_3957 argE 0 4143624 4144775 -1 3819 0.14583333333333334 1152 168 "acetylornithine deacetylase" +BW25113_3957__5prime argE__5prime 0 4144776 4144973 -1 384 0.08080808080808081 198 16 "acetylornithine deacetylase" +BW25113_3957__3prime argE__3prime 0 4143426 4143623 -1 661 0.1414141414141414 198 28 "acetylornithine deacetylase" +BW25113_3958 argC 0 4144929 4145933 1 3160 0.15920398009950248 1005 160 "N-acetyl-gamma-glutamylphosphate reductase and NAD(P)-binding" +BW25113_3958__5prime argC__5prime 0 4144731 4144928 1 276 0.050505050505050504 198 10 "N-acetyl-gamma-glutamylphosphate reductase and NAD(P)-binding" +BW25113_3958__3prime argC__3prime 0 4145934 4146131 1 816 0.17676767676767677 198 35 "N-acetyl-gamma-glutamylphosphate reductase and NAD(P)-binding" +BW25113_3959 argB 0 4145941 4146717 1 3451 0.16473616473616473 777 128 "acetylglutamate kinase" +BW25113_3959__5prime argB__5prime 0 4145743 4145940 1 332 0.10606060606060606 198 21 "acetylglutamate kinase" +BW25113_3959__3prime argB__3prime 0 4146718 4146915 1 330 0.0707070707070707 198 14 "acetylglutamate kinase" +BW25113_3960 argH 0 4146778 4148151 1 5501 0.14992721979621543 1374 206 "argininosuccinate lyase" +BW25113_3960__5prime argH__5prime 0 4146580 4146777 1 1221 0.12626262626262627 198 25 "argininosuccinate lyase" +BW25113_3960__3prime argH__3prime 0 4148152 4148349 1 59 0.025252525252525252 198 5 "argininosuccinate lyase" +BW25113_4458 oxyS 0 4148213 4148322 -1 53 0.03636363636363636 110 4 "sRNA antisense regulator activates genes that detoxify oxidative damage and Hfq-dependent" +BW25113_4458__5prime oxyS__5prime 0 4148323 4148520 -1 449 0.08585858585858586 198 17 "sRNA antisense regulator activates genes that detoxify oxidative damage and Hfq-dependent" +BW25113_4458__3prime oxyS__3prime 0 4148015 4148212 -1 365 0.08585858585858586 198 17 "sRNA antisense regulator activates genes that detoxify oxidative damage and Hfq-dependent" +BW25113_3961 oxyR 0 4148418 4149335 1 5140 0.2233115468409586 918 205 "oxidative and nitrosative stress transcriptional regulator" +BW25113_3961__5prime oxyR__5prime 0 4148220 4148417 1 231 0.045454545454545456 198 9 "oxidative and nitrosative stress transcriptional regulator" +BW25113_3961__3prime oxyR__3prime 0 4149336 4149533 1 291 0.06565656565656566 198 13 "oxidative and nitrosative stress transcriptional regulator" +BW25113_3962 sthA 0 4149318 4150718 -1 3192 0.10778015703069237 1401 151 "pyridine nucleotide transhydrogenase and soluble" +BW25113_3962__5prime sthA__5prime 0 4150719 4150916 -1 456 0.12121212121212122 198 24 "pyridine nucleotide transhydrogenase and soluble" +BW25113_3962__3prime sthA__3prime 0 4149120 4149317 -1 953 0.23737373737373738 198 47 "pyridine nucleotide transhydrogenase and soluble" +BW25113_3963 fabR 0 4151052 4151699 1 2854 0.18209876543209877 648 118 "transcriptional repressor of fabA and fabB" +BW25113_3963__5prime fabR__5prime 0 4150854 4151051 1 545 0.11616161616161616 198 23 "transcriptional repressor of fabA and fabB" +BW25113_3963__3prime fabR__3prime 0 4151700 4151897 1 1511 0.29292929292929293 198 58 "transcriptional repressor of fabA and fabB" +BW25113_3963 fabR 0 4151176 4151176 1 0 0.0 1 0 "4151175_4151176" +BW25113_3963__5prime fabR__5prime 0 4150978 4151175 1 947 0.20707070707070707 198 41 "4151175_4151176" +BW25113_3963__3prime fabR__3prime 0 4151177 4151374 1 1526 0.2676767676767677 198 53 "4151175_4151176" +BW25113_3964 yijD 0 4151699 4152058 1 3264 0.2916666666666667 360 105 "DUF1422 family inner membrane protein" +BW25113_3964__5prime yijD__5prime 0 4151501 4151698 1 397 0.10606060606060606 198 21 "DUF1422 family inner membrane protein" +BW25113_3964__3prime yijD__3prime 0 4152059 4152256 1 1010 0.23737373737373738 198 47 "DUF1422 family inner membrane protein" +4152068_4152090 4152068_4152090 0 4152069 4152090 1 90 0.18181818181818182 22 4 "4152068_4152090" +4152068_4152090__5prime 4152068_4152090__5prime 0 4151871 4152068 1 1990 0.2878787878787879 198 57 "4152068_4152090" +4152068_4152090__3prime 4152068_4152090__3prime 0 4152091 4152288 1 1150 0.2676767676767677 198 53 "4152068_4152090" +BW25113_3965 trmA 0 4152098 4153198 -1 4434 0.18256130790190736 1101 201 "tRNA m(5)U54 methyltransferase and SAM-dependent; tmRNA m(5)U341 methyltransferase" +BW25113_3965__5prime trmA__5prime 0 4153199 4153396 -1 687 0.1919191919191919 198 38 "tRNA m(5)U54 methyltransferase and SAM-dependent; tmRNA m(5)U341 methyltransferase" +BW25113_3965__3prime trmA__3prime 0 4151900 4152097 -1 1882 0.26262626262626265 198 52 "tRNA m(5)U54 methyltransferase and SAM-dependent; tmRNA m(5)U341 methyltransferase" +BW25113_3966 btuB 0 4153567 4155411 1 7751 0.17560975609756097 1845 324 "vitamin B12/cobalamin outer membrane transporter" +BW25113_3966__5prime btuB__5prime 0 4153369 4153566 1 602 0.19696969696969696 198 39 "vitamin B12/cobalamin outer membrane transporter" +BW25113_3966__3prime btuB__3prime 0 4155412 4155609 1 0 0.0 198 0 "vitamin B12/cobalamin outer membrane transporter" +BW25113_3966 btuB 0 4154051 4154051 1 19 1.0 1 1 "4154050_4154051" +BW25113_3966__5prime btuB__5prime 0 4153853 4154050 1 616 0.13636363636363635 198 27 "4154050_4154051" +BW25113_3966__3prime btuB__3prime 0 4154052 4154249 1 658 0.23737373737373738 198 47 "4154050_4154051" +BW25113_3967 murI 0 4155356 4156213 1 0 0.0 858 0 "glutamate racemase" +BW25113_3967__5prime murI__5prime 0 4155158 4155355 1 972 0.1919191919191919 198 38 "glutamate racemase" +BW25113_3967__3prime murI__3prime 0 4156214 4156411 1 118 0.06565656565656566 198 13 "glutamate racemase" +BW25113_3968 rrsB 0 4156587 4158128 1 1035 0.07328145265888457 1542 113 "16S ribosomal RNA of rrnB operon" +BW25113_3968__5prime rrsB__5prime 0 4156389 4156586 1 51 0.030303030303030304 198 6 "16S ribosomal RNA of rrnB operon" +BW25113_3968__3prime rrsB__3prime 0 4158129 4158326 1 191 0.07575757575757576 198 15 "16S ribosomal RNA of rrnB operon" +BW25113_3969 gltT 0 4158300 4158375 1 99 0.11842105263157894 76 9 "tRNA-Glu" +BW25113_3969__5prime gltT__5prime 0 4158102 4158299 1 155 0.06565656565656566 198 13 "tRNA-Glu" +BW25113_3969__3prime gltT__3prime 0 4158376 4158573 1 98 0.04040404040404041 198 8 "tRNA-Glu" +BW25113_3970 rrlB 0 4158569 4161472 1 1865 0.07679063360881543 2904 223 "23S ribosomal RNA of rrnB operon" +BW25113_3970__5prime rrlB__5prime 0 4158371 4158568 1 98 0.04040404040404041 198 8 "23S ribosomal RNA of rrnB operon" +BW25113_3970__3prime rrlB__3prime 0 4161473 4161670 1 123 0.07575757575757576 198 15 "23S ribosomal RNA of rrnB operon" +BW25113_3971 rrfB 0 4161565 4161684 1 76 0.075 120 9 "5S ribosomal RNA of rrnB operon" +BW25113_3971__5prime rrfB__5prime 0 4161367 4161564 1 98 0.06565656565656566 198 13 "5S ribosomal RNA of rrnB operon" +BW25113_3971__3prime rrfB__3prime 0 4161685 4161882 1 706 0.15656565656565657 198 31 "5S ribosomal RNA of rrnB operon" +BW25113_3972 murB 0 4161985 4163013 1 168 0.011661807580174927 1029 12 "UDP-N-acetylenolpyruvoylglucosamine reductase and FAD-binding" +BW25113_3972__5prime murB__5prime 0 4161787 4161984 1 165 0.05555555555555555 198 11 "UDP-N-acetylenolpyruvoylglucosamine reductase and FAD-binding" +BW25113_3972__3prime murB__3prime 0 4163014 4163211 1 433 0.045454545454545456 198 9 "UDP-N-acetylenolpyruvoylglucosamine reductase and FAD-binding" +BW25113_3973 birA 0 4163010 4163975 1 553 0.016563146997929608 966 16 '"bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor and bio-5''-AMP-binding"' +BW25113_3973__5prime birA__5prime 0 4162812 4163009 1 153 0.05555555555555555 198 11 '"bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor and bio-5''-AMP-binding"' +BW25113_3973__3prime birA__3prime 0 4163976 4164173 1 89 0.030303030303030304 198 6 '"bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase/ DNA-binding transcriptional repressor and bio-5''-AMP-binding"' +BW25113_3974 coaA 0 4164004 4164954 -1 120 0.006309148264984227 951 6 "pantothenate kinase" +BW25113_3974__5prime coaA__5prime 0 4164955 4165152 -1 385 0.13131313131313133 198 26 "pantothenate kinase" +BW25113_3974__3prime coaA__3prime 0 4163806 4164003 -1 209 0.06565656565656566 198 13 "pantothenate kinase" +BW25113_3976 thrU 0 4165316 4165391 1 37 0.05263157894736842 76 4 "tRNA-Thr" +BW25113_3976__5prime thrU__5prime 0 4165118 4165315 1 34 0.020202020202020204 198 4 "tRNA-Thr" +BW25113_3976__3prime thrU__3prime 0 4165392 4165589 1 62 0.04040404040404041 198 8 "tRNA-Thr" +BW25113_3977 tyrU 0 4165400 4165484 1 0 0.0 85 0 "tRNA-Tyr" +BW25113_3977__5prime tyrU__5prime 0 4165202 4165399 1 37 0.020202020202020204 198 4 "tRNA-Tyr" +BW25113_3977__3prime tyrU__3prime 0 4165485 4165682 1 77 0.050505050505050504 198 10 "tRNA-Tyr" +BW25113_3978 glyT 0 4165601 4165675 1 0 0.0 75 0 "tRNA-Gly" +BW25113_3978__5prime glyT__5prime 0 4165403 4165600 1 77 0.050505050505050504 198 10 "tRNA-Gly" +BW25113_3978__3prime glyT__3prime 0 4165676 4165873 1 208 0.06565656565656566 198 13 "tRNA-Gly" +BW25113_3979 thrT 0 4165682 4165757 1 111 0.10526315789473684 76 8 "tRNA-Thr" +BW25113_3979__5prime thrT__5prime 0 4165484 4165681 1 77 0.050505050505050504 198 10 "tRNA-Thr" +BW25113_3979__3prime thrT__3prime 0 4165758 4165955 1 240 0.08585858585858586 198 17 "tRNA-Thr" +BW25113_3980 tufB 0 4165872 4167056 1 1646 0.11308016877637131 1185 134 "translation elongation factor EF-Tu 2" +BW25113_3980__5prime tufB__5prime 0 4165674 4165871 1 208 0.06565656565656566 198 13 "translation elongation factor EF-Tu 2" +BW25113_3980__3prime tufB__3prime 0 4167057 4167254 1 6 0.005050505050505051 198 1 "translation elongation factor EF-Tu 2" +BW25113_3981 secE 0 4167286 4167669 1 0 0.0 384 0 "preprotein translocase membrane subunit" +BW25113_3981__5prime secE__5prime 0 4167088 4167285 1 6 0.005050505050505051 198 1 "preprotein translocase membrane subunit" +BW25113_3981__3prime secE__3prime 0 4167670 4167867 1 0 0.0 198 0 "preprotein translocase membrane subunit" +BW25113_3982 nusG 0 4167671 4168216 1 0 0.0 546 0 "transcription termination factor" +BW25113_3982__5prime nusG__5prime 0 4167473 4167670 1 0 0.0 198 0 "transcription termination factor" +BW25113_3982__3prime nusG__3prime 0 4168217 4168414 1 103 0.050505050505050504 198 10 "transcription termination factor" +BW25113_3983 rplK 0 4168375 4168803 1 0 0.0 429 0 "50S ribosomal subunit protein L11" +BW25113_3983__5prime rplK__5prime 0 4168177 4168374 1 103 0.050505050505050504 198 10 "50S ribosomal subunit protein L11" +BW25113_3983__3prime rplK__3prime 0 4168804 4169001 1 10 0.005050505050505051 198 1 "50S ribosomal subunit protein L11" +BW25113_3984 rplA 0 4168807 4169511 1 43 0.0070921985815602835 705 5 "50S ribosomal subunit protein L1" +BW25113_3984__5prime rplA__5prime 0 4168609 4168806 1 0 0.0 198 0 "50S ribosomal subunit protein L1" +BW25113_3984__3prime rplA__3prime 0 4169512 4169709 1 420 0.11616161616161616 198 23 "50S ribosomal subunit protein L1" +BW25113_3985 rplJ 0 4169924 4170421 1 0 0.0 498 0 "50S ribosomal subunit protein L10" +BW25113_3985__5prime rplJ__5prime 0 4169726 4169923 1 18 0.015151515151515152 198 3 "50S ribosomal subunit protein L10" +BW25113_3985__3prime rplJ__3prime 0 4170422 4170619 1 0 0.0 198 0 "50S ribosomal subunit protein L10" +BW25113_3986 rplL 0 4170488 4170853 1 0 0.0 366 0 "50S ribosomal subunit protein L7/L12" +BW25113_3986__5prime rplL__5prime 0 4170290 4170487 1 0 0.0 198 0 "50S ribosomal subunit protein L7/L12" +BW25113_3986__3prime rplL__3prime 0 4170854 4171051 1 298 0.1414141414141414 198 28 "50S ribosomal subunit protein L7/L12" +BW25113_3987 rpoB 0 4171173 4175201 1 0 0.0 4029 0 "RNA polymerase and beta subunit" +BW25113_3987__5prime rpoB__5prime 0 4170975 4171172 1 66 0.04040404040404041 198 8 "RNA polymerase and beta subunit" +BW25113_3987__3prime rpoB__3prime 0 4175202 4175399 1 26 0.020202020202020204 198 4 "RNA polymerase and beta subunit" +BW25113_3988 rpoC 0 4175278 4179501 1 380 0.004498106060606061 4224 19 "RNA polymerase and beta prime subunit" +BW25113_3988__5prime rpoC__5prime 0 4175080 4175277 1 26 0.020202020202020204 198 4 "RNA polymerase and beta prime subunit" +BW25113_3988__3prime rpoC__3prime 0 4179502 4179699 1 492 0.12626262626262627 198 25 "RNA polymerase and beta prime subunit" +BW25113_3988 rpoC 0 4175388 4175979 1 0 0.0 592 0 "4175387_4175979" +BW25113_3988__5prime rpoC__5prime 0 4175190 4175387 1 26 0.020202020202020204 198 4 "4175387_4175979" +BW25113_3988__3prime rpoC__3prime 0 4175980 4176177 1 0 0.0 198 0 "4175387_4175979" +BW25113_3989 yjaZ 0 4179714 4180253 1 2787 0.2074074074074074 540 112 "stationary phase growth adaptation protein" +BW25113_3989__5prime yjaZ__5prime 0 4179516 4179713 1 516 0.13131313131313133 198 26 "stationary phase growth adaptation protein" +BW25113_3989__3prime yjaZ__3prime 0 4180254 4180451 1 483 0.12121212121212122 198 24 "stationary phase growth adaptation protein" +BW25113_4691 sroH 0 4180255 4180415 -1 397 0.11180124223602485 161 18 "novel sRNA and function unknown" +BW25113_4691__5prime sroH__5prime 0 4180416 4180613 -1 375 0.11616161616161616 198 23 "novel sRNA and function unknown" +BW25113_4691__3prime sroH__3prime 0 4180057 4180254 -1 795 0.15656565656565657 198 31 "novel sRNA and function unknown" +BW25113_3990 thiH 0 4180663 4181796 -1 3516 0.13139329805996472 1134 149 "tyrosine lyase and involved in thiamine-thiazole moiety synthesis" +BW25113_3990__5prime thiH__5prime 0 4181797 4181994 -1 384 0.12121212121212122 198 24 "tyrosine lyase and involved in thiamine-thiazole moiety synthesis" +BW25113_3990__3prime thiH__3prime 0 4180465 4180662 -1 328 0.10606060606060606 198 21 "tyrosine lyase and involved in thiamine-thiazole moiety synthesis" +BW25113_3991 thiG 0 4181793 4182563 -1 1848 0.11154345006485085 771 86 "thiamine biosynthesis ThiGH complex subunit" +BW25113_3991__5prime thiG__5prime 0 4182564 4182761 -1 235 0.10101010101010101 198 20 "thiamine biosynthesis ThiGH complex subunit" +BW25113_3991__3prime thiG__3prime 0 4181595 4181792 -1 212 0.06565656565656566 198 13 "thiamine biosynthesis ThiGH complex subunit" +BW25113_4407 thiS 0 4182565 4182765 -1 235 0.09950248756218906 201 20 "immediate sulfur donor in thiazole formation" +BW25113_4407__5prime thiS__5prime 0 4182766 4182963 -1 911 0.19696969696969696 198 39 "immediate sulfur donor in thiazole formation" +BW25113_4407__3prime thiS__3prime 0 4182367 4182564 -1 325 0.10606060606060606 198 21 "immediate sulfur donor in thiazole formation" +BW25113_3992 thiF 0 4182749 4183504 -1 3283 0.17195767195767195 756 130 "adenylyltransferase and modifies ThiS C-terminus" +BW25113_3992__5prime thiF__5prime 0 4183505 4183702 -1 583 0.14646464646464646 198 29 "adenylyltransferase and modifies ThiS C-terminus" +BW25113_3992__3prime thiF__3prime 0 4182551 4182748 -1 251 0.10101010101010101 198 20 "adenylyltransferase and modifies ThiS C-terminus" +BW25113_3993 thiE 0 4183497 4184132 -1 3015 0.16823899371069181 636 107 "thiamine phosphate synthase (thiamine phosphate pyrophosphorylase)" +BW25113_3993__5prime thiE__5prime 0 4184133 4184330 -1 133 0.06565656565656566 198 13 "thiamine phosphate synthase (thiamine phosphate pyrophosphorylase)" +BW25113_3993__3prime thiE__3prime 0 4183299 4183496 -1 852 0.12121212121212122 198 24 "thiamine phosphate synthase (thiamine phosphate pyrophosphorylase)" +BW25113_3994 thiC 0 4184132 4186027 -1 5701 0.13660337552742616 1896 259 "phosphomethylpyrimidine synthase" +BW25113_3994__5prime thiC__5prime 0 4186028 4186225 -1 680 0.17676767676767677 198 35 "phosphomethylpyrimidine synthase" +BW25113_3994__3prime thiC__3prime 0 4183934 4184131 -1 1683 0.2474747474747475 198 49 "phosphomethylpyrimidine synthase" +BW25113_3995 rsd 0 4186260 4186736 -1 1220 0.1278825995807128 477 61 "stationary phase protein and binds sigma 70 RNA polymerase subunit" +BW25113_3995__5prime rsd__5prime 0 4186737 4186934 -1 101 0.05555555555555555 198 11 "stationary phase protein and binds sigma 70 RNA polymerase subunit" +BW25113_3995__3prime rsd__3prime 0 4186062 4186259 -1 630 0.16666666666666666 198 33 "stationary phase protein and binds sigma 70 RNA polymerase subunit" +BW25113_3996 nudC 0 4186831 4187604 1 3876 0.17829457364341086 774 138 "NADH pyrophosphatase" +BW25113_3996__5prime nudC__5prime 0 4186633 4186830 1 530 0.15656565656565657 198 31 "NADH pyrophosphatase" +BW25113_3996__3prime nudC__3prime 0 4187605 4187802 1 142 0.050505050505050504 198 10 "NADH pyrophosphatase" +BW25113_3997 hemE 0 4187644 4188708 1 114 0.008450704225352112 1065 9 "uroporphyrinogen decarboxylase" +BW25113_3997__5prime hemE__5prime 0 4187446 4187643 1 1898 0.2676767676767677 198 53 "uroporphyrinogen decarboxylase" +BW25113_3997__3prime hemE__3prime 0 4188709 4188906 1 477 0.10606060606060606 198 21 "uroporphyrinogen decarboxylase" +BW25113_3998 nfi 0 4188718 4189389 1 3044 0.1488095238095238 672 100 '"endonuclease V; deoxyinosine 3'' endonuclease"' +BW25113_3998__5prime nfi__5prime 0 4188520 4188717 1 209 0.05555555555555555 198 11 '"endonuclease V; deoxyinosine 3'' endonuclease"' +BW25113_3998__3prime nfi__3prime 0 4189390 4189587 1 190 0.05555555555555555 198 11 '"endonuclease V; deoxyinosine 3'' endonuclease"' +BW25113_3999 yjaG 0 4189432 4190022 1 834 0.07106598984771574 591 42 "DUF416 domain protein" +BW25113_3999__5prime yjaG__5prime 0 4189234 4189431 1 1507 0.1414141414141414 198 28 "DUF416 domain protein" +BW25113_3999__3prime yjaG__3prime 0 4190023 4190220 1 551 0.1414141414141414 198 28 "DUF416 domain protein" +BW25113_4000 hupA 0 4190209 4190481 1 1049 0.1794871794871795 273 49 "HU and DNA-binding transcriptional regulator and alpha subunit" +BW25113_4000__5prime hupA__5prime 0 4190011 4190208 1 522 0.13636363636363635 198 27 "HU and DNA-binding transcriptional regulator and alpha subunit" +BW25113_4000__3prime hupA__3prime 0 4190482 4190679 1 572 0.15151515151515152 198 30 "HU and DNA-binding transcriptional regulator and alpha subunit" +BW25113_4001 yjaH 0 4190494 4191189 1 1866 0.14942528735632185 696 104 "DUF1481 family putative lipoprotein" +BW25113_4001__5prime yjaH__5prime 0 4190296 4190493 1 664 0.15151515151515152 198 30 "DUF1481 family putative lipoprotein" +BW25113_4001__3prime yjaH__3prime 0 4191190 4191387 1 636 0.13636363636363635 198 27 "DUF1481 family putative lipoprotein" +BW25113_4002 zraP 0 4191191 4191616 -1 1155 0.11267605633802817 426 48 "Zn-dependent periplasmic chaperone" +BW25113_4002__5prime zraP__5prime 0 4191617 4191814 -1 230 0.10101010101010101 198 20 "Zn-dependent periplasmic chaperone" +BW25113_4002__3prime zraP__3prime 0 4190993 4191190 -1 531 0.16161616161616163 198 32 "Zn-dependent periplasmic chaperone" +BW25113_4003 zraS 0 4191854 4193251 1 4234 0.15879828326180256 1398 222 "sensory histidine kinase in two-component regulatory system with ZraR" +BW25113_4003__5prime zraS__5prime 0 4191656 4191853 1 186 0.08080808080808081 198 16 "sensory histidine kinase in two-component regulatory system with ZraR" +BW25113_4003__3prime zraS__3prime 0 4193252 4193449 1 585 0.17676767676767677 198 35 "sensory histidine kinase in two-component regulatory system with ZraR" +BW25113_4004 zraR 0 4193248 4194573 1 4515 0.1478129713423831 1326 196 "fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein" +BW25113_4004__5prime zraR__5prime 0 4193050 4193247 1 1019 0.2474747474747475 198 49 "fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein" +BW25113_4004__3prime zraR__3prime 0 4194574 4194771 1 1332 0.13131313131313133 198 26 "fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein" +BW25113_4005 purD 0 4194570 4195859 -1 4292 0.12790697674418605 1290 165 "phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase" +BW25113_4005__5prime purD__5prime 0 4195860 4196057 -1 1035 0.18181818181818182 198 36 "phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase" +BW25113_4005__3prime purD__3prime 0 4194372 4194569 -1 376 0.11616161616161616 198 23 "phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase" +BW25113_4006 purH 0 4195871 4197460 -1 6114 0.15220125786163521 1590 242 "fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase" +BW25113_4006__5prime purH__5prime 0 4197461 4197658 -1 197 0.06565656565656566 198 13 "fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase" +BW25113_4006__3prime purH__3prime 0 4195673 4195870 -1 601 0.14646464646464646 198 29 "fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase" +BW25113_4007 rrsE 0 4198075 4199616 1 1135 0.07976653696498054 1542 123 "16S ribosomal RNA of rrnE operon" +BW25113_4007__5prime rrsE__5prime 0 4197877 4198074 1 144 0.06060606060606061 198 12 "16S ribosomal RNA of rrnE operon" +BW25113_4007__3prime rrsE__3prime 0 4199617 4199814 1 149 0.08080808080808081 198 16 "16S ribosomal RNA of rrnE operon" +BW25113_4008 gltV 0 4199702 4199777 1 115 0.14473684210526316 76 11 "tRNA-Glu" +BW25113_4008__5prime gltV__5prime 0 4199504 4199701 1 44 0.030303030303030304 198 6 "tRNA-Glu" +BW25113_4008__3prime gltV__3prime 0 4199778 4199975 1 15 0.015151515151515152 198 3 "tRNA-Glu" +BW25113_4009 rrlE 0 4199971 4202874 1 1936 0.07506887052341597 2904 218 "23S ribosomal RNA of rrnE operon" +BW25113_4009__5prime rrlE__5prime 0 4199773 4199970 1 15 0.015151515151515152 198 3 "23S ribosomal RNA of rrnE operon" +BW25113_4009__3prime rrlE__3prime 0 4202875 4203072 1 91 0.06565656565656566 198 13 "23S ribosomal RNA of rrnE operon" +BW25113_4010 rrfE 0 4202968 4203087 1 63 0.06666666666666667 120 8 "5S ribosomal RNA of rrnE operon" +BW25113_4010__5prime rrfE__5prime 0 4202770 4202967 1 100 0.06565656565656566 198 13 "5S ribosomal RNA of rrnE operon" +BW25113_4010__3prime rrfE__3prime 0 4203088 4203285 1 63 0.020202020202020204 198 4 "5S ribosomal RNA of rrnE operon" +BW25113_4011 yjaA 0 4203162 4203545 1 254 0.0390625 384 15 "stress-induced protein" +BW25113_4011__5prime yjaA__5prime 0 4202964 4203161 1 63 0.04040404040404041 198 8 "stress-induced protein" +BW25113_4011__3prime yjaA__3prime 0 4203546 4203743 1 79 0.030303030303030304 198 6 "stress-induced protein" +BW25113_4012 yjaB 0 4203608 4204051 -1 748 0.06531531531531531 444 29 "putative acetyltransferase" +BW25113_4012__5prime yjaB__5prime 0 4204052 4204249 -1 117 0.050505050505050504 198 10 "putative acetyltransferase" +BW25113_4012__3prime yjaB__3prime 0 4203410 4203607 -1 36 0.020202020202020204 198 4 "putative acetyltransferase" +BW25113_4013 metA 0 4204208 4205137 1 1192 0.05806451612903226 930 54 "homoserine O-transsuccinylase" +BW25113_4013__5prime metA__5prime 0 4204010 4204207 1 117 0.050505050505050504 198 10 "homoserine O-transsuccinylase" +BW25113_4013__3prime metA__3prime 0 4205138 4205335 1 19 0.010101010101010102 198 2 "homoserine O-transsuccinylase" +BW25113_4014 aceB 0 4205406 4207007 1 1984 0.07240948813982521 1602 116 "malate synthase A" +BW25113_4014__5prime aceB__5prime 0 4205208 4205405 1 0 0.0 198 0 "malate synthase A" +BW25113_4014__3prime aceB__3prime 0 4207008 4207205 1 479 0.09090909090909091 198 18 "malate synthase A" +BW25113_4015 aceA 0 4207037 4208341 1 2917 0.11187739463601533 1305 146 "isocitrate lyase" +BW25113_4015__5prime aceA__5prime 0 4206839 4207036 1 321 0.050505050505050504 198 10 "isocitrate lyase" +BW25113_4015__3prime aceA__3prime 0 4208342 4208539 1 331 0.10606060606060606 198 21 "isocitrate lyase" +4208363_4208495 4208363_4208495 0 4208364 4208495 1 307 0.13636363636363635 132 18 "4208363_4208495" +4208363_4208495__5prime 4208363_4208495__5prime 0 4208166 4208363 1 621 0.15151515151515152 198 30 "4208363_4208495" +4208363_4208495__3prime 4208363_4208495__3prime 0 4208496 4208693 1 248 0.09090909090909091 198 18 "4208363_4208495" +BW25113_4016 aceK 0 4208524 4210260 1 5848 0.1381692573402418 1737 240 "isocitrate dehydrogenase kinase/phosphatase" +BW25113_4016__5prime aceK__5prime 0 4208326 4208523 1 331 0.10606060606060606 198 21 "isocitrate dehydrogenase kinase/phosphatase" +BW25113_4016__3prime aceK__3prime 0 4210261 4210458 1 1009 0.2777777777777778 198 55 "isocitrate dehydrogenase kinase/phosphatase" +BW25113_4017 arpA 0 4210229 4212415 -1 22768 0.273891175125743 2187 599 "ankyrin repeat protein" +BW25113_4017__5prime arpA__5prime 0 4212416 4212613 -1 243 0.1111111111111111 198 22 "ankyrin repeat protein" +BW25113_4017__3prime arpA__3prime 0 4210031 4210228 -1 2516 0.3888888888888889 198 77 "ankyrin repeat protein" +BW25113_4018 iclR 0 4212732 4213556 -1 5946 0.22666666666666666 825 187 "transcriptional repressor" +BW25113_4018__5prime iclR__5prime 0 4213557 4213754 -1 173 0.05555555555555555 198 11 "transcriptional repressor" +BW25113_4018__3prime iclR__3prime 0 4212534 4212731 -1 3634 0.3686868686868687 198 73 "transcriptional repressor" +BW25113_4019 metH 0 4213756 4217439 1 12178 0.13246471226927253 3684 488 "homocysteine-N5-methyltetrahydrofolate transmethylase and B12-dependent" +BW25113_4019__5prime metH__5prime 0 4213558 4213755 1 178 0.06060606060606061 198 12 "homocysteine-N5-methyltetrahydrofolate transmethylase and B12-dependent" +BW25113_4019__3prime metH__3prime 0 4217440 4217637 1 250 0.10606060606060606 198 21 "homocysteine-N5-methyltetrahydrofolate transmethylase and B12-dependent" +BW25113_4020 yjbB 0 4217659 4219290 1 7322 0.1636029411764706 1632 267 "putative Na+/Pi-cotransporter" +BW25113_4020__5prime yjbB__5prime 0 4217461 4217658 1 285 0.11616161616161616 198 23 "putative Na+/Pi-cotransporter" +BW25113_4020__3prime yjbB__3prime 0 4219291 4219488 1 1069 0.20707070707070707 198 41 "putative Na+/Pi-cotransporter" +4219303_4219373 4219303_4219373 0 4219304 4219373 1 239 0.17142857142857143 70 12 "4219303_4219373" +4219303_4219373__5prime 4219303_4219373__5prime 0 4219106 4219303 1 1225 0.18181818181818182 198 36 "4219303_4219373" +4219303_4219373__3prime 4219303_4219373__3prime 0 4219374 4219571 1 1210 0.22727272727272727 198 45 "4219303_4219373" +BW25113_4021 pepE 0 4219381 4220070 -1 2992 0.16956521739130434 690 117 "(alpha)-aspartyl dipeptidase" +BW25113_4021__5prime pepE__5prime 0 4220071 4220268 -1 1075 0.1717171717171717 198 34 "(alpha)-aspartyl dipeptidase" +BW25113_4021__3prime pepE__3prime 0 4219183 4219380 -1 1352 0.18686868686868688 198 37 "(alpha)-aspartyl dipeptidase" +BW25113_4022 rluF 0 4220282 4221154 1 2997 0.14891179839633448 873 130 "23S rRNA pseudouridine(2604) synthase" +BW25113_4022__5prime rluF__5prime 0 4220084 4220281 1 1163 0.18686868686868688 198 37 "23S rRNA pseudouridine(2604) synthase" +BW25113_4022__3prime rluF__3prime 0 4221155 4221352 1 881 0.19696969696969696 198 39 "23S rRNA pseudouridine(2604) synthase" +BW25113_4023 yjbD 0 4221287 4221559 -1 1973 0.2490842490842491 273 68 "DUF3811 family protein" +BW25113_4023__5prime yjbD__5prime 0 4221560 4221757 -1 2871 0.30303030303030304 198 60 "DUF3811 family protein" +BW25113_4023__3prime yjbD__3prime 0 4221089 4221286 -1 796 0.16666666666666666 198 33 "DUF3811 family protein" +BW25113_4024 lysC 0 4221812 4223161 -1 6913 0.17037037037037037 1350 230 "lysine-sensitive aspartokinase 3" +BW25113_4024__5prime lysC__5prime 0 4223162 4223359 -1 707 0.15151515151515152 198 30 "lysine-sensitive aspartokinase 3" +BW25113_4024__3prime lysC__3prime 0 4221614 4221811 -1 1390 0.20707070707070707 198 41 "lysine-sensitive aspartokinase 3" +BW25113_4025 pgi 0 4223686 4225335 1 5596 0.17212121212121212 1650 284 "glucosephosphate isomerase" +BW25113_4025__5prime pgi__5prime 0 4223488 4223685 1 196 0.06565656565656566 198 13 "glucosephosphate isomerase" +BW25113_4025__3prime pgi__3prime 0 4225336 4225533 1 2986 0.3333333333333333 198 66 "glucosephosphate isomerase" +4225348_4225425 4225348_4225425 0 4225349 4225425 1 1154 0.4155844155844156 77 32 "4225348_4225425" +4225348_4225425__5prime 4225348_4225425__5prime 0 4225151 4225348 1 558 0.16666666666666666 198 33 "4225348_4225425" +4225348_4225425__3prime 4225348_4225425__3prime 0 4225426 4225623 1 1863 0.19696969696969696 198 39 "4225348_4225425" +BW25113_4026 yjbE 0 4225834 4226076 1 4369 0.35390946502057613 243 86 "extracellular polysaccharide production threonine-rich protein" +BW25113_4026__5prime yjbE__5prime 0 4225636 4225833 1 960 0.11616161616161616 198 23 "extracellular polysaccharide production threonine-rich protein" +BW25113_4026__3prime yjbE__3prime 0 4226077 4226274 1 1668 0.2676767676767677 198 53 "extracellular polysaccharide production threonine-rich protein" +BW25113_4027 yjbF 0 4226190 4226828 1 4008 0.20970266040688576 639 134 "extracellular polysaccharide production lipoprotein" +BW25113_4027__5prime yjbF__5prime 0 4225992 4226189 1 1286 0.30303030303030304 198 60 "extracellular polysaccharide production lipoprotein" +BW25113_4027__3prime yjbF__3prime 0 4226829 4227026 1 569 0.12626262626262627 198 25 "extracellular polysaccharide production lipoprotein" +BW25113_4028 yjbG 0 4226825 4227562 1 1596 0.11246612466124661 738 83 "extracellular polysaccharide export OMA protein" +BW25113_4028__5prime yjbG__5prime 0 4226627 4226824 1 499 0.12626262626262627 198 25 "extracellular polysaccharide export OMA protein" +BW25113_4028__3prime yjbG__3prime 0 4227563 4227760 1 186 0.08080808080808081 198 16 "extracellular polysaccharide export OMA protein" +BW25113_4029 yjbH 0 4227562 4229658 1 5825 0.12732474964234622 2097 267 "DUF940 family extracellular polysaccharide protein" +BW25113_4029__5prime yjbH__5prime 0 4227364 4227561 1 380 0.1111111111111111 198 22 "DUF940 family extracellular polysaccharide protein" +BW25113_4029__3prime yjbH__3prime 0 4229659 4229856 1 488 0.16161616161616163 198 32 "DUF940 family extracellular polysaccharide protein" +BW25113_4620 yjbT 0 4229705 4229983 -1 629 0.13978494623655913 279 39 "putative periplasmic protein" +BW25113_4620__5prime yjbT__5prime 0 4229984 4230181 -1 83 0.04040404040404041 198 8 "putative periplasmic protein" +BW25113_4620__3prime yjbT__3prime 0 4229507 4229704 -1 464 0.1414141414141414 198 28 "putative periplasmic protein" +4230084_4230121 4230084_4230121 0 4230085 4230121 1 0 0.0 37 0 "4230084_4230121" +4230084_4230121__5prime 4230084_4230121__5prime 0 4229887 4230084 1 249 0.04040404040404041 198 8 "4230084_4230121" +4230084_4230121__3prime 4230084_4230121__3prime 0 4230122 4230319 1 316 0.1414141414141414 198 28 "4230084_4230121" +BW25113_4030 psiE 0 4230253 4230663 1 1240 0.145985401459854 411 60 "phosphate starvation inducible protein" +BW25113_4030__5prime psiE__5prime 0 4230055 4230252 1 181 0.09090909090909091 198 18 "phosphate starvation inducible protein" +BW25113_4030__3prime psiE__3prime 0 4230664 4230861 1 593 0.05555555555555555 198 11 "phosphate starvation inducible protein" +BW25113_4031 xylE 0 4230707 4232182 -1 26673 0.3428184281842818 1476 506 "D-xylose transporter" +BW25113_4031__5prime xylE__5prime 0 4232183 4232380 -1 3033 0.19696969696969696 198 39 "D-xylose transporter" +BW25113_4031__3prime xylE__3prime 0 4230509 4230706 -1 572 0.13131313131313133 198 26 "D-xylose transporter" +BW25113_4032 malG 0 4232554 4233444 -1 2277 0.1425364758698092 891 127 "maltose transporter subunit" +BW25113_4032__5prime malG__5prime 0 4233445 4233642 -1 509 0.12626262626262627 198 25 "maltose transporter subunit" +BW25113_4032__3prime malG__3prime 0 4232356 4232553 -1 2176 0.2222222222222222 198 44 "maltose transporter subunit" +BW25113_4033 malF 0 4233459 4235003 -1 4995 0.13656957928802588 1545 211 "maltose transporter subunit" +BW25113_4033__5prime malF__5prime 0 4235004 4235201 -1 843 0.1919191919191919 198 38 "maltose transporter subunit" +BW25113_4033__3prime malF__3prime 0 4233261 4233458 -1 362 0.10101010101010101 198 20 "maltose transporter subunit" +4235019_4235145 4235019_4235145 0 4235020 4235145 1 377 0.21428571428571427 126 27 "4235019_4235145" +4235019_4235145__5prime 4235019_4235145__5prime 0 4234822 4235019 1 813 0.19696969696969696 198 39 "4235019_4235145" +4235019_4235145__3prime 4235019_4235145__3prime 0 4235146 4235343 1 685 0.09595959595959595 198 19 "4235019_4235145" +BW25113_4034 malE 0 4235157 4236347 -1 3071 0.11083123425692695 1191 132 "maltose transporter subunit" +BW25113_4034__5prime malE__5prime 0 4236348 4236545 -1 204 0.06060606060606061 198 12 "maltose transporter subunit" +BW25113_4034__3prime malE__3prime 0 4234959 4235156 -1 612 0.18181818181818182 198 36 "maltose transporter subunit" +BW25113_4035 malK 0 4236712 4237827 1 3160 0.0913978494623656 1116 102 "fused maltose transport subunit and ATP-binding component of ABC superfamily/regulatory protein" +BW25113_4035__5prime malK__5prime 0 4236514 4236711 1 321 0.11616161616161616 198 23 "fused maltose transport subunit and ATP-binding component of ABC superfamily/regulatory protein" +BW25113_4035__3prime malK__3prime 0 4237828 4238025 1 356 0.08080808080808081 198 16 "fused maltose transport subunit and ATP-binding component of ABC superfamily/regulatory protein" +BW25113_4036 lamB 0 4237899 4239239 1 4594 0.13049962714392244 1341 175 "maltose outer membrane porin (maltoporin)" +BW25113_4036__5prime lamB__5prime 0 4237701 4237898 1 514 0.06060606060606061 198 12 "maltose outer membrane porin (maltoporin)" +BW25113_4036__3prime lamB__3prime 0 4239240 4239437 1 299 0.09595959595959595 198 19 "maltose outer membrane porin (maltoporin)" +4239248_4239373 4239248_4239373 0 4239249 4239373 1 152 0.088 125 11 "4239248_4239373" +4239248_4239373__5prime 4239248_4239373__5prime 0 4239051 4239248 1 294 0.05555555555555555 198 11 "4239248_4239373" +4239248_4239373__3prime 4239248_4239373__3prime 0 4239374 4239571 1 672 0.15151515151515152 198 30 "4239248_4239373" +BW25113_4037 malM 0 4239482 4240402 1 3482 0.18132464712269272 921 167 "maltose regulon periplasmic protein" +BW25113_4037__5prime malM__5prime 0 4239284 4239481 1 410 0.13131313131313133 198 26 "maltose regulon periplasmic protein" +BW25113_4037__3prime malM__3prime 0 4240403 4240600 1 1228 0.2828282828282828 198 56 "maltose regulon periplasmic protein" +BW25113_4038 yjbI 0 4240631 4242211 1 10016 0.18785578747628084 1581 297 "4240630_4242211" +BW25113_4038__5prime yjbI__5prime 0 4240433 4240630 1 958 0.24242424242424243 198 48 "4240630_4242211" +BW25113_4038__3prime yjbI__3prime 0 4242212 4242409 1 3620 0.398989898989899 198 79 "4240630_4242211" +BW25113_4039 ubiC 0 4242434 4242931 1 1411 0.12650602409638553 498 63 "chorismate--pyruvate lyase" +BW25113_4039__5prime ubiC__5prime 0 4242236 4242433 1 3614 0.37373737373737376 198 74 "chorismate--pyruvate lyase" +BW25113_4039__3prime ubiC__3prime 0 4242932 4243129 1 5 0.005050505050505051 198 1 "chorismate--pyruvate lyase" +BW25113_4040 ubiA 0 4242944 4243816 1 19 0.002290950744558992 873 2 "p-hydroxybenzoate octaprenyltransferase" +BW25113_4040__5prime ubiA__5prime 0 4242746 4242943 1 567 0.1111111111111111 198 22 "p-hydroxybenzoate octaprenyltransferase" +BW25113_4040__3prime ubiA__3prime 0 4243817 4244014 1 965 0.2222222222222222 198 44 "p-hydroxybenzoate octaprenyltransferase" +4243828_4243958 4243828_4243958 0 4243829 4243958 1 617 0.2230769230769231 130 29 "4243828_4243958" +4243828_4243958__5prime 4243828_4243958__5prime 0 4243631 4243828 1 101 0.020202020202020204 198 4 "4243828_4243958" +4243828_4243958__3prime 4243828_4243958__3prime 0 4243959 4244156 1 545 0.09090909090909091 198 18 "4243828_4243958" +BW25113_4041 plsB 0 4243971 4246394 -1 698 0.008663366336633664 2424 21 "glycerol-3-phosphate O-acyltransferase" +BW25113_4041__5prime plsB__5prime 0 4246395 4246592 -1 634 0.12626262626262627 198 25 "glycerol-3-phosphate O-acyltransferase" +BW25113_4041__3prime plsB__3prime 0 4243773 4243970 -1 718 0.16666666666666666 198 33 "glycerol-3-phosphate O-acyltransferase" +BW25113_4042 dgkA 0 4246565 4246933 1 825 0.10569105691056911 369 39 "diacylglycerol kinase" +BW25113_4042__5prime dgkA__5prime 0 4246367 4246564 1 598 0.10606060606060606 198 21 "diacylglycerol kinase" +BW25113_4042__3prime dgkA__3prime 0 4246934 4247131 1 208 0.06060606060606061 198 12 "diacylglycerol kinase" +BW25113_4043 lexA 0 4247043 4247651 1 89 0.013136288998357963 609 8 "transcriptional repressor of SOS regulon" +BW25113_4043__5prime lexA__5prime 0 4246845 4247042 1 376 0.12121212121212122 198 24 "transcriptional repressor of SOS regulon" +BW25113_4043__3prime lexA__3prime 0 4247652 4247849 1 454 0.09090909090909091 198 18 "transcriptional repressor of SOS regulon" +BW25113_4044 dinF 0 4247670 4249049 1 4906 0.14420289855072463 1380 199 "oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein" +BW25113_4044__5prime dinF__5prime 0 4247472 4247669 1 99 0.050505050505050504 198 10 "oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein" +BW25113_4044__3prime dinF__3prime 0 4249050 4249247 1 210 0.07575757575757576 198 15 "oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein" +BW25113_4045 yjbJ 0 4249165 4249374 1 285 0.08571428571428572 210 18 "stress-induced protein and UPF0337 family" +BW25113_4045__5prime yjbJ__5prime 0 4248967 4249164 1 190 0.06060606060606061 198 12 "stress-induced protein and UPF0337 family" +BW25113_4045__3prime yjbJ__3prime 0 4249375 4249572 1 1559 0.2828282828282828 198 56 "stress-induced protein and UPF0337 family" +BW25113_4046 zur 0 4249416 4249931 -1 2845 0.21705426356589147 516 112 "transcriptional repressor and Zn(II)-binding" +BW25113_4046__5prime zur__5prime 0 4249932 4250129 -1 3094 0.2878787878787879 198 57 "transcriptional repressor and Zn(II)-binding" +BW25113_4046__3prime zur__3prime 0 4249218 4249415 -1 620 0.16666666666666666 198 33 "transcriptional repressor and Zn(II)-binding" +BW25113_4047 yjbL 0 4250249 4250503 1 327 0.0784313725490196 255 20 "uncharacterized protein" +BW25113_4047__5prime yjbL__5prime 0 4250051 4250248 1 875 0.17676767676767677 198 35 "uncharacterized protein" +BW25113_4047__3prime yjbL__3prime 0 4250504 4250701 1 1494 0.3333333333333333 198 66 "uncharacterized protein" +BW25113_4048 yjbM 0 4250527 4251234 1 5499 0.25 708 177 "uncharacterized protein" +BW25113_4048__5prime yjbM__5prime 0 4250329 4250526 1 198 0.07575757575757576 198 15 "uncharacterized protein" +BW25113_4048__3prime yjbM__3prime 0 4251235 4251432 1 686 0.19696969696969696 198 39 "uncharacterized protein" +BW25113_4049 dusA 0 4251597 4252634 1 5319 0.16666666666666666 1038 173 "tRNA-dihydrouridine synthase A" +BW25113_4049__5prime dusA__5prime 0 4251399 4251596 1 3659 0.3333333333333333 198 66 "tRNA-dihydrouridine synthase A" +BW25113_4049__3prime dusA__3prime 0 4252635 4252832 1 133 0.05555555555555555 198 11 "tRNA-dihydrouridine synthase A" +BW25113_4050 pspG 0 4252768 4253010 1 530 0.11934156378600823 243 29 "phage shock protein G" +BW25113_4050__5prime pspG__5prime 0 4252570 4252767 1 120 0.050505050505050504 198 10 "phage shock protein G" +BW25113_4050__3prime pspG__3prime 0 4253011 4253208 1 810 0.24242424242424243 198 48 "phage shock protein G" +BW25113_4051 qorA 0 4253176 4254159 -1 2498 0.13922764227642276 984 137 "quinone oxidoreductase and NADPH-dependent" +BW25113_4051__5prime qorA__5prime 0 4254160 4254357 -1 270 0.10101010101010101 198 20 "quinone oxidoreductase and NADPH-dependent" +BW25113_4051__3prime qorA__3prime 0 4252978 4253175 -1 587 0.20707070707070707 198 41 "quinone oxidoreductase and NADPH-dependent" +BW25113_4052 dnaB 0 4254242 4255657 1 53 0.0035310734463276836 1416 5 "replicative DNA helicase" +BW25113_4052__5prime dnaB__5prime 0 4254044 4254241 1 432 0.16161616161616163 198 32 "replicative DNA helicase" +BW25113_4052__3prime dnaB__3prime 0 4255658 4255855 1 376 0.12121212121212122 198 24 "replicative DNA helicase" +BW25113_4053 alr 0 4255710 4256789 1 3676 0.16111111111111112 1080 174 "alanine racemase and biosynthetic and PLP-binding" +BW25113_4053__5prime alr__5prime 0 4255512 4255709 1 0 0.0 198 0 "alanine racemase and biosynthetic and PLP-binding" +BW25113_4053__3prime alr__3prime 0 4256790 4256987 1 541 0.08585858585858586 198 17 "alanine racemase and biosynthetic and PLP-binding" +4256815_4256912 4256815_4256912 0 4256816 4256912 1 27 0.041237113402061855 97 4 "4256815_4256912" +4256815_4256912__5prime 4256815_4256912__5prime 0 4256618 4256815 1 708 0.13636363636363635 198 27 "4256815_4256912" +4256815_4256912__3prime 4256815_4256912__3prime 0 4256913 4257110 1 1020 0.12121212121212122 198 24 "4256815_4256912" +BW25113_4054 tyrB 0 4257042 4258235 1 5717 0.2169179229480737 1194 259 "tyrosine aminotransferase and tyrosine-repressible and PLP-dependent" +BW25113_4054__5prime tyrB__5prime 0 4256844 4257041 1 764 0.08585858585858586 198 17 "tyrosine aminotransferase and tyrosine-repressible and PLP-dependent" +BW25113_4054__3prime tyrB__3prime 0 4258236 4258433 1 1919 0.23232323232323232 198 46 "tyrosine aminotransferase and tyrosine-repressible and PLP-dependent" +4258244_4258268 4258244_4258268 0 4258245 4258268 1 1247 0.7916666666666666 24 19 "4258244_4258268" +4258244_4258268__5prime 4258244_4258268__5prime 0 4258047 4258244 1 2651 0.42424242424242425 198 84 "4258244_4258268" +4258244_4258268__3prime 4258244_4258268__3prime 0 4258269 4258466 1 286 0.1111111111111111 198 22 "4258244_4258268" +BW25113_4621 yjbS 0 4258737 4258940 -1 336 0.11764705882352941 204 24 "uncharacterized protein" +BW25113_4621__5prime yjbS__5prime 0 4258941 4259138 -1 963 0.14646464646464646 198 29 "uncharacterized protein" +BW25113_4621__3prime yjbS__3prime 0 4258539 4258736 -1 296 0.06060606060606061 198 12 "uncharacterized protein" +BW25113_4055 aphA 0 4259342 4260055 1 2941 0.17086834733893558 714 122 "acid phosphatase/phosphotransferase and class B and non-specific" +BW25113_4055__5prime aphA__5prime 0 4259144 4259341 1 438 0.10606060606060606 198 21 "acid phosphatase/phosphotransferase and class B and non-specific" +BW25113_4055__3prime aphA__3prime 0 4260056 4260253 1 939 0.13636363636363635 198 27 "acid phosphatase/phosphotransferase and class B and non-specific" +BW25113_4056 yjbQ 0 4260166 4260582 1 1501 0.1606714628297362 417 67 "thiamine phosphate synthase" +BW25113_4056__5prime yjbQ__5prime 0 4259968 4260165 1 1116 0.19696969696969696 198 39 "thiamine phosphate synthase" +BW25113_4056__3prime yjbQ__3prime 0 4260583 4260780 1 678 0.15656565656565657 198 31 "thiamine phosphate synthase" +BW25113_4057 yjbR 0 4260586 4260942 1 913 0.12605042016806722 357 45 "DUF419 family protein" +BW25113_4057__5prime yjbR__5prime 0 4260388 4260585 1 660 0.18181818181818182 198 36 "DUF419 family protein" +BW25113_4057__3prime yjbR__3prime 0 4260943 4261140 1 503 0.1414141414141414 198 28 "DUF419 family protein" +BW25113_4058 uvrA 0 4260977 4263799 -1 8765 0.1342543393552958 2823 379 "ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC" +BW25113_4058__5prime uvrA__5prime 0 4263800 4263997 -1 456 0.10606060606060606 198 21 "ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC" +BW25113_4058__3prime uvrA__3prime 0 4260779 4260976 -1 309 0.07575757575757576 198 15 "ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC" +BW25113_4059 ssb 0 4264053 4264589 1 0 0.0 537 0 "single-stranded DNA-binding protein" +BW25113_4059__5prime ssb__5prime 0 4263855 4264052 1 288 0.08585858585858586 198 17 "single-stranded DNA-binding protein" +BW25113_4059__3prime ssb__3prime 0 4264590 4264787 1 486 0.11616161616161616 198 23 "single-stranded DNA-binding protein" +BW25113_4060 yjcB 0 4264688 4264969 -1 1310 0.2127659574468085 282 60 "putative inner membrane protein" +BW25113_4060__5prime yjcB__5prime 0 4264970 4265167 -1 1439 0.19696969696969696 198 39 "putative inner membrane protein" +BW25113_4060__3prime yjcB__3prime 0 4264490 4264687 -1 56 0.030303030303030304 198 6 "putative inner membrane protein" +BW25113_4061 yjcC 0 4265399 4266985 1 23840 0.34530560806553245 1587 548 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_4061__5prime yjcC__5prime 0 4265201 4265398 1 1174 0.17676767676767677 198 35 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_4061__3prime yjcC__3prime 0 4266986 4267183 1 427 0.1111111111111111 198 22 "putative membrane-anchored cyclic-di-GMP phosphodiesterase" +BW25113_4062 soxS 0 4266988 4267311 -1 702 0.10802469135802469 324 35 "superoxide response regulon transcriptional activator; autoregulator" +BW25113_4062__5prime soxS__5prime 0 4267312 4267509 -1 5347 0.20707070707070707 198 41 "superoxide response regulon transcriptional activator; autoregulator" +BW25113_4062__3prime soxS__3prime 0 4266790 4266987 -1 677 0.19696969696969696 198 39 "superoxide response regulon transcriptional activator; autoregulator" +BW25113_4063 soxR 0 4267397 4267861 1 6126 0.15913978494623657 465 74 "redox-sensitive transcriptional activator of soxS; autorepressor" +BW25113_4063__5prime soxR__5prime 0 4267199 4267396 1 755 0.12121212121212122 198 24 "redox-sensitive transcriptional activator of soxS; autorepressor" +BW25113_4063__3prime soxR__3prime 0 4267862 4268059 1 482 0.12121212121212122 198 24 "redox-sensitive transcriptional activator of soxS; autorepressor" +BW25113_4459 ryjA 0 4267855 4267994 -1 370 0.16428571428571428 140 23 "novel sRNA and function unknown" +BW25113_4459__5prime ryjA__5prime 0 4267995 4268192 -1 484 0.0707070707070707 198 14 "novel sRNA and function unknown" +BW25113_4459__3prime ryjA__3prime 0 4267657 4267854 -1 755 0.13636363636363635 198 27 "novel sRNA and function unknown" +BW25113_4064 yjcD 0 4268407 4269756 1 4327 0.14296296296296296 1350 193 "inner membrane putative guanine permease" +BW25113_4064__5prime yjcD__5prime 0 4268209 4268406 1 81 0.03535353535353535 198 7 "inner membrane putative guanine permease" +BW25113_4064__3prime yjcD__3prime 0 4269757 4269954 1 237 0.09090909090909091 198 18 "inner membrane putative guanine permease" +BW25113_4065 yjcE 0 4269908 4271557 1 3472 0.11696969696969697 1650 193 "putative cation/proton antiporter" +BW25113_4065__5prime yjcE__5prime 0 4269710 4269907 1 207 0.09090909090909091 198 18 "putative cation/proton antiporter" +BW25113_4065__3prime yjcE__3prime 0 4271558 4271755 1 1052 0.2878787878787879 198 57 "putative cation/proton antiporter" +BW25113_4066 yjcF 0 4271711 4273003 -1 5753 0.18020108275328692 1293 233 "pentapeptide repeats protein" +BW25113_4066__5prime yjcF__5prime 0 4273004 4273201 -1 2394 0.21212121212121213 198 42 "pentapeptide repeats protein" +BW25113_4066__3prime yjcF__3prime 0 4271513 4271710 -1 1064 0.2676767676767677 198 53 "pentapeptide repeats protein" +BW25113_4067 actP 0 4273181 4274830 -1 6524 0.12484848484848485 1650 206 "acetate transporter" +BW25113_4067__5prime actP__5prime 0 4274831 4275028 -1 525 0.14646464646464646 198 29 "acetate transporter" +BW25113_4067__3prime actP__3prime 0 4272983 4273180 -1 865 0.1717171717171717 198 34 "acetate transporter" +BW25113_4068 yjcH 0 4274827 4275141 -1 634 0.11428571428571428 315 36 "DUF485 family inner membrane protein" +BW25113_4068__5prime yjcH__5prime 0 4275142 4275339 -1 476 0.1111111111111111 198 22 "DUF485 family inner membrane protein" +BW25113_4068__3prime yjcH__3prime 0 4274629 4274826 -1 414 0.08080808080808081 198 16 "DUF485 family inner membrane protein" +4275229_4275306 4275229_4275306 0 4275230 4275306 1 184 0.11688311688311688 77 9 "4275229_4275306" +4275229_4275306__5prime 4275229_4275306__5prime 0 4275032 4275229 1 323 0.08080808080808081 198 16 "4275229_4275306" +4275229_4275306__3prime 4275229_4275306__3prime 0 4275307 4275504 1 333 0.07575757575757576 198 15 "4275229_4275306" +BW25113_4069 acs 0 4275341 4277299 -1 5096 0.11485451761102604 1959 225 "acetyl-CoA synthetase" +BW25113_4069__5prime acs__5prime 0 4277300 4277497 -1 58 0.010101010101010102 198 2 "acetyl-CoA synthetase" +BW25113_4069__3prime acs__3prime 0 4275143 4275340 -1 476 0.1111111111111111 198 22 "acetyl-CoA synthetase" +BW25113_4070 nrfA 0 4277692 4279128 1 4204 0.12943632567849686 1437 186 "nitrite reductase and formate-dependent and cytochrome" +BW25113_4070__5prime nrfA__5prime 0 4277494 4277691 1 470 0.08585858585858586 198 17 "nitrite reductase and formate-dependent and cytochrome" +BW25113_4070__3prime nrfA__3prime 0 4279129 4279326 1 910 0.18686868686868688 198 37 "nitrite reductase and formate-dependent and cytochrome" +BW25113_4071 nrfB 0 4279173 4279739 1 2705 0.1710758377425044 567 97 "nitrite reductase and formate-dependent and penta-heme cytochrome c" +BW25113_4071__5prime nrfB__5prime 0 4278975 4279172 1 908 0.16161616161616163 198 32 "nitrite reductase and formate-dependent and penta-heme cytochrome c" +BW25113_4071__3prime nrfB__3prime 0 4279740 4279937 1 551 0.10606060606060606 198 21 "nitrite reductase and formate-dependent and penta-heme cytochrome c" +BW25113_4072 nrfC 0 4279736 4280407 1 1639 0.09821428571428571 672 66 "formate-dependent nitrite reductase and 4Fe4S subunit" +BW25113_4072__5prime nrfC__5prime 0 4279538 4279735 1 946 0.15656565656565657 198 31 "formate-dependent nitrite reductase and 4Fe4S subunit" +BW25113_4072__3prime nrfC__3prime 0 4280408 4280605 1 592 0.12626262626262627 198 25 "formate-dependent nitrite reductase and 4Fe4S subunit" +BW25113_4073 nrfD 0 4280404 4281360 1 2709 0.13584117032392895 957 130 "formate-dependent nitrite reductase and membrane subunit" +BW25113_4073__5prime nrfD__5prime 0 4280206 4280403 1 458 0.08585858585858586 198 17 "formate-dependent nitrite reductase and membrane subunit" +BW25113_4073__3prime nrfD__3prime 0 4281361 4281558 1 711 0.13636363636363635 198 27 "formate-dependent nitrite reductase and membrane subunit" +BW25113_4074 nrfE 0 4281440 4283098 1 5888 0.14828209764918626 1659 246 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfE" +BW25113_4074__5prime nrfE__5prime 0 4281242 4281439 1 550 0.15656565656565657 198 31 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfE" +BW25113_4074__3prime nrfE__3prime 0 4283099 4283296 1 766 0.1414141414141414 198 28 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfE" +BW25113_4075 nrfF 0 4283091 4283474 1 1355 0.1484375 384 57 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfF" +BW25113_4075__5prime nrfF__5prime 0 4282893 4283090 1 316 0.09595959595959595 198 19 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfF" +BW25113_4075__3prime nrfF__3prime 0 4283475 4283672 1 592 0.08080808080808081 198 16 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfF" +BW25113_4076 nrfG 0 4283471 4284067 1 1813 0.10385259631490787 597 62 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfG" +BW25113_4076__5prime nrfG__5prime 0 4283273 4283470 1 562 0.13131313131313133 198 26 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfG" +BW25113_4076__3prime nrfG__3prime 0 4284068 4284265 1 104 0.020202020202020204 198 4 "heme lyase (NrfEFG) for insertion of heme into c552 and subunit NrfG" +BW25113_4077 gltP 0 4284409 4285722 1 4855 0.16818873668188736 1314 221 "glutamate/aspartate:proton symporter" +BW25113_4077__5prime gltP__5prime 0 4284211 4284408 1 366 0.10606060606060606 198 21 "glutamate/aspartate:proton symporter" +BW25113_4077__3prime gltP__3prime 0 4285723 4285920 1 727 0.1414141414141414 198 28 "glutamate/aspartate:proton symporter" +4285722_4286252 4285722_4286252 0 4285723 4286252 1 1838 0.15849056603773584 530 84 "4285722_4286252" +4285722_4286252__5prime 4285722_4286252__5prime 0 4285525 4285722 1 839 0.16666666666666666 198 33 "4285722_4286252" +4285722_4286252__3prime 4285722_4286252__3prime 0 4286253 4286450 1 843 0.16666666666666666 198 33 "4285722_4286252" +4286195_4286196 4286195_4286196 0 4286196 4286196 1 0 0.0 1 0 "4286195_4286196" +4286195_4286196__5prime 4286195_4286196__5prime 0 4285998 4286195 1 810 0.16161616161616163 198 32 "4286195_4286196" +4286195_4286196__3prime 4286195_4286196__3prime 0 4286197 4286394 1 1012 0.21717171717171718 198 43 "4286195_4286196" +BW25113_4078 yjcO 0 4286253 4286942 -1 1861 0.11594202898550725 690 80 "Sel1 family TPR-like repeat protein" +BW25113_4078__5prime yjcO__5prime 0 4286943 4287140 -1 502 0.14646464646464646 198 29 "Sel1 family TPR-like repeat protein" +BW25113_4078__3prime yjcO__3prime 0 4286055 4286252 -1 719 0.18181818181818182 198 36 "Sel1 family TPR-like repeat protein" +BW25113_4079 fdhF 0 4287036 4289183 -1 6023 0.1196461824953445 2148 257 "formate dehydrogenase-H and selenopolypeptide subunit" +BW25113_4079__5prime fdhF__5prime 0 4289184 4289381 -1 218 0.05555555555555555 198 11 "formate dehydrogenase-H and selenopolypeptide subunit" +BW25113_4079__3prime fdhF__3prime 0 4286838 4287035 -1 427 0.13131313131313133 198 26 "formate dehydrogenase-H and selenopolypeptide subunit" +BW25113_4080 mdtP 0 4289381 4290847 -1 4659 0.1383776414451261 1467 203 "outer membrane factor of efflux pump" +BW25113_4080__5prime mdtP__5prime 0 4290848 4291045 -1 259 0.08585858585858586 198 17 "outer membrane factor of efflux pump" +BW25113_4080__3prime mdtP__3prime 0 4289183 4289380 -1 218 0.05555555555555555 198 11 "outer membrane factor of efflux pump" +BW25113_4081 mdtO 0 4290844 4292895 -1 5124 0.11403508771929824 2052 234 "membrane translocase (MDR) of MdtNOP efflux pump and PET family" +BW25113_4081__5prime mdtO__5prime 0 4292896 4293093 -1 680 0.10606060606060606 198 21 "membrane translocase (MDR) of MdtNOP efflux pump and PET family" +BW25113_4081__3prime mdtO__3prime 0 4290646 4290843 -1 363 0.1111111111111111 198 22 "membrane translocase (MDR) of MdtNOP efflux pump and PET family" +BW25113_4082 mdtN 0 4292895 4293926 -1 3604 0.14922480620155038 1032 154 "membrane fusion protein of efflux pump" +BW25113_4082__5prime mdtN__5prime 0 4293927 4294124 -1 3472 0.37373737373737376 198 74 "membrane fusion protein of efflux pump" +BW25113_4082__3prime mdtN__3prime 0 4292697 4292894 -1 398 0.07575757575757576 198 15 "membrane fusion protein of efflux pump" +BW25113_4622 ytcA 0 4293945 4294220 -1 4571 0.39855072463768115 276 110 "putative inner membrane DUF1656 family protein; efflux pump associated" +BW25113_4622__5prime ytcA__5prime 0 4294221 4294418 -1 808 0.1919191919191919 198 38 "putative inner membrane DUF1656 family protein; efflux pump associated" +BW25113_4622__3prime ytcA__3prime 0 4293747 4293944 -1 1727 0.35858585858585856 198 71 "putative inner membrane DUF1656 family protein; efflux pump associated" +BW25113_4083 yjcS 0 4294429 4296414 -1 15325 0.2512588116817724 1986 499 "metallo-beta-lactamase superfamily protein" +BW25113_4083__5prime yjcS__5prime 0 4296415 4296612 -1 685 0.16161616161616163 198 32 "metallo-beta-lactamase superfamily protein" +BW25113_4083__3prime yjcS__3prime 0 4294231 4294428 -1 636 0.18181818181818182 198 36 "metallo-beta-lactamase superfamily protein" +BW25113_4084 alsK 0 4296687 4297616 -1 4784 0.17311827956989248 930 161 "D-allose kinase" +BW25113_4084__5prime alsK__5prime 0 4297617 4297814 -1 951 0.21717171717171718 198 43 "D-allose kinase" +BW25113_4084__3prime alsK__3prime 0 4296489 4296686 -1 2470 0.29292929292929293 198 58 "D-allose kinase" +BW25113_4085 alsE 0 4297600 4298295 -1 2284 0.13649425287356323 696 95 "allulose-6-phosphate 3-epimerase" +BW25113_4085__5prime alsE__5prime 0 4298296 4298493 -1 175 0.045454545454545456 198 9 "allulose-6-phosphate 3-epimerase" +BW25113_4085__3prime alsE__3prime 0 4297402 4297599 -1 861 0.12626262626262627 198 25 "allulose-6-phosphate 3-epimerase" +BW25113_4086 alsC 0 4298306 4299286 -1 2948 0.13863404689092762 981 136 "D-allose transporter subunit" +BW25113_4086__5prime alsC__5prime 0 4299287 4299484 -1 833 0.18686868686868688 198 37 "D-allose transporter subunit" +BW25113_4086__3prime alsC__3prime 0 4298108 4298305 -1 268 0.08585858585858586 198 17 "D-allose transporter subunit" +BW25113_4087 alsA 0 4299265 4300797 -1 9431 0.21591650358773645 1533 331 "fused D-allose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_4087__5prime alsA__5prime 0 4300798 4300995 -1 4861 0.5050505050505051 198 100 "fused D-allose transporter subunits of ABC superfamily: ATP-binding components" +BW25113_4087__3prime alsA__3prime 0 4299067 4299264 -1 520 0.13636363636363635 198 27 "fused D-allose transporter subunits of ABC superfamily: ATP-binding components" +4300830_4300912 4300830_4300912 0 4300831 4300912 1 2062 0.5609756097560976 82 46 "4300830_4300912" +4300830_4300912__5prime 4300830_4300912__5prime 0 4300633 4300830 1 1988 0.3333333333333333 198 66 "4300830_4300912" +4300830_4300912__3prime 4300830_4300912__3prime 0 4300913 4301110 1 3928 0.3939393939393939 198 78 "4300830_4300912" +BW25113_4088 alsB 0 4300924 4301859 -1 8948 0.24252136752136752 936 227 "D-allose transporter subunit" +BW25113_4088__5prime alsB__5prime 0 4301860 4302057 -1 1609 0.24242424242424243 198 48 "D-allose transporter subunit" +BW25113_4088__3prime alsB__3prime 0 4300726 4300923 -1 3465 0.4797979797979798 198 95 "D-allose transporter subunit" +BW25113_4089 alsR 0 4301918 4302808 -1 6719 0.244668911335578 891 218 "d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR" +BW25113_4089__5prime alsR__5prime 0 4302809 4303006 -1 289 0.0707070707070707 198 14 "d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR" +BW25113_4089__3prime alsR__3prime 0 4301720 4301917 -1 1551 0.30808080808080807 198 61 "d-allose-inducible als operon transcriptional repressor; autorepressor; repressor of rpiR" +BW25113_4090 rpiB 0 4303167 4303616 1 1821 0.10666666666666667 450 48 "ribose 5-phosphate isomerase B/allose 6-phosphate isomerase" +BW25113_4090__5prime rpiB__5prime 0 4302969 4303166 1 45 0.030303030303030304 198 6 "ribose 5-phosphate isomerase B/allose 6-phosphate isomerase" +BW25113_4090__3prime rpiB__3prime 0 4303617 4303814 1 682 0.16161616161616163 198 32 "ribose 5-phosphate isomerase B/allose 6-phosphate isomerase" +BW25113_4487 yjdP 0 4303685 4304014 1 863 0.1303030303030303 330 43 "putative periplasmic protein" +BW25113_4487__5prime yjdP__5prime 0 4303487 4303684 1 1429 0.13636363636363635 198 27 "putative periplasmic protein" +BW25113_4487__3prime yjdP__3prime 0 4304015 4304212 1 1307 0.2828282828282828 198 56 "putative periplasmic protein" +BW25113_4092 phnP 0 4304161 4304919 -1 2480 0.12911725955204217 759 98 "5-phospho-alpha-D-ribosyl 1 and 2-cyclic phosphate phosphodiesterase" +BW25113_4092__5prime phnP__5prime 0 4304920 4305117 -1 542 0.1111111111111111 198 22 "5-phospho-alpha-D-ribosyl 1 and 2-cyclic phosphate phosphodiesterase" +BW25113_4092__3prime phnP__3prime 0 4303963 4304160 -1 1150 0.21717171717171718 198 43 "5-phospho-alpha-D-ribosyl 1 and 2-cyclic phosphate phosphodiesterase" +BW25113_4093 phnO 0 4304921 4305355 -1 1071 0.08275862068965517 435 36 "aminoalkylphosphonate N-acetyltransferase" +BW25113_4093__5prime phnO__5prime 0 4305356 4305553 -1 561 0.11616161616161616 198 23 "aminoalkylphosphonate N-acetyltransferase" +BW25113_4093__3prime phnO__3prime 0 4304723 4304920 -1 316 0.10101010101010101 198 20 "aminoalkylphosphonate N-acetyltransferase" +BW25113_4094 phnN 0 4305342 4305899 -1 1624 0.1111111111111111 558 62 "ribose 1 and 5-bisphosphokinase" +BW25113_4094__5prime phnN__5prime 0 4305900 4306097 -1 659 0.09595959595959595 198 19 "ribose 1 and 5-bisphosphokinase" +BW25113_4094__3prime phnN__3prime 0 4305144 4305341 -1 192 0.03535353535353535 198 7 "ribose 1 and 5-bisphosphokinase" +BW25113_4095 phnM 0 4305899 4307035 -1 2611 0.08970976253298153 1137 102 "ribophosphonate triphosphate hydrolase" +BW25113_4095__5prime phnM__5prime 0 4307036 4307233 -1 583 0.10101010101010101 198 20 "ribophosphonate triphosphate hydrolase" +BW25113_4095__3prime phnM__3prime 0 4305701 4305898 -1 104 0.025252525252525252 198 5 "ribophosphonate triphosphate hydrolase" +BW25113_4096 phnL 0 4307032 4307712 -1 1786 0.10719530102790015 681 73 "ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP-binding protein" +BW25113_4096__5prime phnL__5prime 0 4307713 4307910 -1 740 0.14646464646464646 198 29 "ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP-binding protein" +BW25113_4096__3prime phnL__3prime 0 4306834 4307031 -1 316 0.08080808080808081 198 16 "ribophosphonate triphosphate synthase subunit; putative ABC transporter ATP-binding protein" +4307733_4307816 4307733_4307816 0 4307734 4307816 1 172 0.08433734939759036 83 7 "4307733_4307816" +4307733_4307816__5prime 4307733_4307816__5prime 0 4307536 4307733 1 441 0.09090909090909091 198 18 "4307733_4307816" +4307733_4307816__3prime 4307733_4307816__3prime 0 4307817 4308014 1 956 0.1717171717171717 198 34 "4307733_4307816" +BW25113_4097 phnK 0 4307823 4308581 -1 2233 0.1251646903820817 759 95 "carbon-phosphorus lyase complex subunit and putative ATP transporter ATP-binding protein" +BW25113_4097__5prime phnK__5prime 0 4308582 4308779 -1 234 0.0707070707070707 198 14 "carbon-phosphorus lyase complex subunit and putative ATP transporter ATP-binding protein" +BW25113_4097__3prime phnK__3prime 0 4307625 4307822 -1 428 0.09090909090909091 198 18 "carbon-phosphorus lyase complex subunit and putative ATP transporter ATP-binding protein" +BW25113_4098 phnJ 0 4308578 4309423 -1 1813 0.09810874704491726 846 83 "carbon-phosphorus lyase and SAM-dependent" +BW25113_4098__5prime phnJ__5prime 0 4309424 4309621 -1 540 0.09595959595959595 198 19 "carbon-phosphorus lyase and SAM-dependent" +BW25113_4098__3prime phnJ__3prime 0 4308380 4308577 -1 407 0.1111111111111111 198 22 "carbon-phosphorus lyase and SAM-dependent" +BW25113_4099 phnI 0 4309416 4310480 -1 3465 0.11549295774647887 1065 123 "ribophosphonate triphosphate synthase complex putative catalytic subunit" +BW25113_4099__5prime phnI__5prime 0 4310481 4310678 -1 358 0.08585858585858586 198 17 "ribophosphonate triphosphate synthase complex putative catalytic subunit" +BW25113_4099__3prime phnI__3prime 0 4309218 4309415 -1 92 0.050505050505050504 198 10 "ribophosphonate triphosphate synthase complex putative catalytic subunit" +BW25113_4100 phnH 0 4310480 4311064 -1 1086 0.07692307692307693 585 45 "ribophosphonate triphosphate synthase subunit" +BW25113_4100__5prime phnH__5prime 0 4311065 4311262 -1 562 0.14646464646464646 198 29 "ribophosphonate triphosphate synthase subunit" +BW25113_4100__3prime phnH__3prime 0 4310282 4310479 -1 797 0.1717171717171717 198 34 "ribophosphonate triphosphate synthase subunit" +BW25113_4101 phnG 0 4311061 4311513 -1 943 0.12362030905077263 453 56 "ribophosphonate triphosphate synthase subunit" +BW25113_4101__5prime phnG__5prime 0 4311514 4311711 -1 3555 0.25252525252525254 198 50 "ribophosphonate triphosphate synthase subunit" +BW25113_4101__3prime phnG__3prime 0 4310863 4311060 -1 431 0.07575757575757576 198 15 "ribophosphonate triphosphate synthase subunit" +BW25113_4102 phnF 0 4311514 4312239 -1 7443 0.19972451790633608 726 145 "putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation" +BW25113_4102__5prime phnF__5prime 0 4312240 4312437 -1 1661 0.12626262626262627 198 25 "putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation" +BW25113_4102__3prime phnF__3prime 0 4311316 4311513 -1 317 0.1111111111111111 198 22 "putative DNA-binding transcriptional regulator of phosphonate uptake and biodegradation" +BW25113_4104 phnE 0 4312260 4313047 -1 4639 0.13959390862944163 788 110 "4312259_4313047" +BW25113_4104__5prime phnE__5prime 0 4313048 4313245 -1 1472 0.20707070707070707 198 41 "4312259_4313047" +BW25113_4104__3prime phnE__3prime 0 4312062 4312259 -1 866 0.1414141414141414 198 28 "4312259_4313047" +4313062_4313149 4313062_4313149 0 4313063 4313149 1 631 0.19540229885057472 87 17 "4313062_4313149" +4313062_4313149__5prime 4313062_4313149__5prime 0 4312865 4313062 1 918 0.1717171717171717 198 34 "4313062_4313149" +4313062_4313149__3prime 4313062_4313149__3prime 0 4313150 4313347 1 1641 0.17676767676767677 198 35 "4313062_4313149" +BW25113_4105 phnD 0 4313153 4314169 -1 2921 0.0776794493608653 1017 79 "phosphonate ABC transporter periplasmic binding protein" +BW25113_4105__5prime phnD__5prime 0 4314170 4314367 -1 1204 0.13131313131313133 198 26 "phosphonate ABC transporter periplasmic binding protein" +BW25113_4105__3prime phnD__3prime 0 4312955 4313152 -1 1107 0.17676767676767677 198 35 "phosphonate ABC transporter periplasmic binding protein" +BW25113_4106 phnC 0 4314194 4314982 -1 3300 0.12801013941698353 789 101 "phosphonate ABC transporter ATP-binding subunit" +BW25113_4106__5prime phnC__5prime 0 4314983 4315180 -1 277 0.09090909090909091 198 18 "phosphonate ABC transporter ATP-binding subunit" +BW25113_4106__3prime phnC__3prime 0 4313996 4314193 -1 144 0.03535353535353535 198 7 "phosphonate ABC transporter ATP-binding subunit" +BW25113_4107 yjdN 0 4315115 4315558 -1 1133 0.09234234234234234 444 41 "metalloprotein superfamily protein" +BW25113_4107__5prime yjdN__5prime 0 4315559 4315756 -1 571 0.06565656565656566 198 13 "metalloprotein superfamily protein" +BW25113_4107__3prime yjdN__3prime 0 4314917 4315114 -1 284 0.13131313131313133 198 26 "metalloprotein superfamily protein" +4315618_4316201 4315618_4316201 0 4315619 4316201 1 716 0.06518010291595197 583 38 "4315618_4316201" +4315618_4316201__5prime 4315618_4316201__5prime 0 4315421 4315618 1 1153 0.14646464646464646 198 29 "4315618_4316201" +4315618_4316201__3prime 4315618_4316201__3prime 0 4316202 4316399 1 1010 0.14646464646464646 198 29 "4315618_4316201" +BW25113_4108 yjdM 0 4316216 4316551 -1 3336 0.25 336 84 "zinc-ribbon family protein" +BW25113_4108__5prime yjdM__5prime 0 4316552 4316749 -1 230 0.06565656565656566 198 13 "zinc-ribbon family protein" +BW25113_4108__3prime yjdM__3prime 0 4316018 4316215 -1 163 0.0707070707070707 198 14 "zinc-ribbon family protein" +BW25113_4109 crfC 0 4316952 4319180 1 17883 0.20502467474203678 2229 457 "clamp-binding sister replication fork colocalization protein and dynamin-related" +BW25113_4109__5prime crfC__5prime 0 4316754 4316951 1 28 0.010101010101010102 198 2 "clamp-binding sister replication fork colocalization protein and dynamin-related" +BW25113_4109__3prime crfC__3prime 0 4319181 4319378 1 632 0.12626262626262627 198 25 "clamp-binding sister replication fork colocalization protein and dynamin-related" +BW25113_4110 yjcZ 0 4319177 4320055 1 2557 0.11945392491467577 879 105 "YjcZ family protein and mutational suppressor of yhjH motility mutation" +BW25113_4110__5prime yjcZ__5prime 0 4318979 4319176 1 308 0.06565656565656566 198 13 "YjcZ family protein and mutational suppressor of yhjH motility mutation" +BW25113_4110__3prime yjcZ__3prime 0 4320056 4320253 1 83 0.03535353535353535 198 7 "YjcZ family protein and mutational suppressor of yhjH motility mutation" +BW25113_4111 proP 0 4320319 4321821 1 7503 0.2162341982701264 1503 325 "proline/glycine betaine transporter" +BW25113_4111__5prime proP__5prime 0 4320121 4320318 1 223 0.050505050505050504 198 10 "proline/glycine betaine transporter" +BW25113_4111__3prime proP__3prime 0 4321822 4322019 1 1413 0.3333333333333333 198 66 "proline/glycine betaine transporter" +4321830_4321862 4321830_4321862 0 4321831 4321862 1 367 0.59375 32 19 "4321830_4321862" +4321830_4321862__5prime 4321830_4321862__5prime 0 4321633 4321830 1 266 0.10606060606060606 198 21 "4321830_4321862" +4321830_4321862__3prime 4321830_4321862__3prime 0 4321863 4322060 1 1556 0.31313131313131315 198 62 "4321830_4321862" +BW25113_4703 pmrR 0 4321933 4322022 1 623 0.24444444444444444 90 22 "putative membrane-bound BasS regulator" +BW25113_4703__5prime pmrR__5prime 0 4321735 4321932 1 810 0.23737373737373738 198 47 "putative membrane-bound BasS regulator" +BW25113_4703__3prime pmrR__3prime 0 4322023 4322220 1 1586 0.29292929292929293 198 58 "putative membrane-bound BasS regulator" +BW25113_4112 basS 0 4321998 4323089 -1 4062 0.15842490842490842 1092 173 "sensory histidine kinase in two-component regulatory system with BasR" +BW25113_4112__5prime basS__5prime 0 4323090 4323287 -1 1211 0.21212121212121213 198 42 "sensory histidine kinase in two-component regulatory system with BasR" +BW25113_4112__3prime basS__3prime 0 4321800 4321997 -1 1317 0.31313131313131315 198 62 "sensory histidine kinase in two-component regulatory system with BasR" +BW25113_4113 basR 0 4323099 4323767 -1 2867 0.16890881913303438 669 113 "response regulator in two-component regulatory system with BasS" +BW25113_4113__5prime basR__5prime 0 4323768 4323965 -1 373 0.1111111111111111 198 22 "response regulator in two-component regulatory system with BasS" +BW25113_4113__3prime basR__3prime 0 4322901 4323098 -1 429 0.08080808080808081 198 16 "response regulator in two-component regulatory system with BasS" +BW25113_4114 eptA 0 4323764 4325407 -1 6870 0.17639902676399027 1644 290 "lipid A phosphoethanolamine transferase" +BW25113_4114__5prime eptA__5prime 0 4325408 4325605 -1 1360 0.26262626262626265 198 52 "lipid A phosphoethanolamine transferase" +BW25113_4114__3prime eptA__3prime 0 4323566 4323763 -1 951 0.18181818181818182 198 36 "lipid A phosphoethanolamine transferase" +BW25113_4115 adiC 0 4325511 4326848 -1 8555 0.2100149476831091 1338 281 "arginine:agmatine antiporter" +BW25113_4115__5prime adiC__5prime 0 4326849 4327046 -1 5765 0.5202020202020202 198 103 "arginine:agmatine antiporter" +BW25113_4115__3prime adiC__3prime 0 4325313 4325510 -1 1030 0.25757575757575757 198 51 "arginine:agmatine antiporter" +BW25113_4116 adiY 0 4326985 4327746 -1 18217 0.45931758530183725 762 350 "adi system transcriptional activator" +BW25113_4116__5prime adiY__5prime 0 4327747 4327944 -1 2193 0.15656565656565657 198 31 "adi system transcriptional activator" +BW25113_4116__3prime adiY__3prime 0 4326787 4326984 -1 3924 0.4494949494949495 198 89 "adi system transcriptional activator" +BW25113_4117 adiA 0 4328071 4330338 -1 7648 0.14462081128747795 2268 328 "arginine decarboxylase" +BW25113_4117__5prime adiA__5prime 0 4330339 4330536 -1 42 0.020202020202020204 198 4 "arginine decarboxylase" +BW25113_4117__3prime adiA__3prime 0 4327873 4328070 -1 2775 0.21717171717171718 198 43 "arginine decarboxylase" +BW25113_4118 melR 0 4330537 4331445 -1 1646 0.10671067106710672 909 97 "melibiose operon transcriptional regulator; autoregulator" +BW25113_4118__5prime melR__5prime 0 4331446 4331643 -1 1073 0.1414141414141414 198 28 "melibiose operon transcriptional regulator; autoregulator" +BW25113_4118__3prime melR__3prime 0 4330339 4330536 -1 42 0.020202020202020204 198 4 "melibiose operon transcriptional regulator; autoregulator" +BW25113_4119 melA 0 4331728 4333083 1 4767 0.14896755162241887 1356 202 "alpha-galactosidase and NAD(P)-binding" +BW25113_4119__5prime melA__5prime 0 4331530 4331727 1 437 0.06060606060606061 198 12 "alpha-galactosidase and NAD(P)-binding" +BW25113_4119__3prime melA__3prime 0 4333084 4333281 1 1287 0.19696969696969696 198 39 "alpha-galactosidase and NAD(P)-binding" +BW25113_4120 melB 0 4333186 4334607 1 9129 0.2348804500703235 1422 334 "melibiose:sodium symporter" +BW25113_4120__5prime melB__5prime 0 4332988 4333185 1 703 0.1414141414141414 198 28 "melibiose:sodium symporter" +BW25113_4120__3prime melB__3prime 0 4334608 4334805 1 389 0.1111111111111111 198 22 "melibiose:sodium symporter" +4334631_4334726 4334631_4334726 0 4334632 4334726 1 133 0.09473684210526316 95 9 "4334631_4334726" +4334631_4334726__5prime 4334631_4334726__5prime 0 4334434 4334631 1 913 0.21212121212121213 198 42 "4334631_4334726" +4334631_4334726__3prime 4334631_4334726__3prime 0 4334727 4334924 1 1670 0.2474747474747475 198 49 "4334631_4334726" +BW25113_4121 yjdF 0 4334746 4335375 -1 3494 0.18571428571428572 630 117 "DUF2238 family inner membrane protein" +BW25113_4121__5prime yjdF__5prime 0 4335376 4335573 -1 553 0.14646464646464646 198 29 "DUF2238 family inner membrane protein" +BW25113_4121__3prime yjdF__3prime 0 4334548 4334745 -1 425 0.13636363636363635 198 27 "DUF2238 family inner membrane protein" +BW25113_4122 fumB 0 4335497 4337143 -1 4747 0.14268366727383122 1647 235 "anaerobic class I fumarate hydratase (fumarase B)" +BW25113_4122__5prime fumB__5prime 0 4337144 4337341 -1 717 0.18686868686868688 198 37 "anaerobic class I fumarate hydratase (fumarase B)" +BW25113_4122__3prime fumB__3prime 0 4335299 4335496 -1 572 0.15151515151515152 198 30 "anaerobic class I fumarate hydratase (fumarase B)" +BW25113_4123 dcuB 0 4337221 4338561 -1 8424 0.18568232662192394 1341 249 "C4-dicarboxylate transporter and anaerobic; DcuS co-sensor" +BW25113_4123__5prime dcuB__5prime 0 4338562 4338759 -1 919 0.25757575757575757 198 51 "C4-dicarboxylate transporter and anaerobic; DcuS co-sensor" +BW25113_4123__3prime dcuB__3prime 0 4337023 4337220 -1 506 0.15151515151515152 198 30 "C4-dicarboxylate transporter and anaerobic; DcuS co-sensor" +BW25113_4124 dcuR 0 4339132 4339851 -1 6240 0.20833333333333334 720 150 "response regulator in two-component regulatory system with DcuS" +BW25113_4124__5prime dcuR__5prime 0 4339852 4340049 -1 563 0.1111111111111111 198 22 "response regulator in two-component regulatory system with DcuS" +BW25113_4124__3prime dcuR__3prime 0 4338934 4339131 -1 430 0.12121212121212122 198 24 "response regulator in two-component regulatory system with DcuS" +BW25113_4125 dcuS 0 4339848 4341479 -1 7501 0.18321078431372548 1632 299 "sensory histidine kinase in two-component regulatory system with DcuR and regulator of anaerobic fumarate respiration" +BW25113_4125__5prime dcuS__5prime 0 4341480 4341677 -1 3085 0.4898989898989899 198 97 "sensory histidine kinase in two-component regulatory system with DcuR and regulator of anaerobic fumarate respiration" +BW25113_4125__3prime dcuS__3prime 0 4339650 4339847 -1 397 0.10606060606060606 198 21 "sensory histidine kinase in two-component regulatory system with DcuR and regulator of anaerobic fumarate respiration" +BW25113_4126 yjdI 0 4341660 4341890 1 5427 0.5497835497835498 231 127 "putative 4Fe-4S mono-cluster protein" +BW25113_4126__5prime yjdI__5prime 0 4341462 4341659 1 2395 0.4595959595959596 198 91 "putative 4Fe-4S mono-cluster protein" +BW25113_4126__3prime yjdI__3prime 0 4341891 4342088 1 1197 0.18181818181818182 198 36 "putative 4Fe-4S mono-cluster protein" +BW25113_4127 yjdJ 0 4341902 4342174 1 1431 0.18681318681318682 273 51 "putative acyl-CoA transferase" +BW25113_4127__5prime yjdJ__5prime 0 4341704 4341901 1 2981 0.48484848484848486 198 96 "putative acyl-CoA transferase" +BW25113_4127__3prime yjdJ__3prime 0 4342175 4342372 1 5895 0.3838383838383838 198 76 "putative acyl-CoA transferase" +BW25113_4128 yjdK 0 4342401 4342697 1 1318 0.21548821548821548 297 64 "uncharacterized protein" +BW25113_4128__5prime yjdK__5prime 0 4342203 4342400 1 5487 0.3686868686868687 198 73 "uncharacterized protein" +BW25113_4128__3prime yjdK__3prime 0 4342698 4342895 1 2176 0.2878787878787879 198 57 "uncharacterized protein" +BW25113_4559 yjdO 0 4342725 4342898 1 1944 0.3045977011494253 174 53 "uncharacterized protein" +BW25113_4559__5prime yjdO__5prime 0 4342527 4342724 1 1165 0.21717171717171718 198 43 "uncharacterized protein" +BW25113_4559__3prime yjdO__3prime 0 4342899 4343096 1 4251 0.4292929292929293 198 85 "uncharacterized protein" +BW25113_4129 lysU 0 4343017 4344534 -1 21234 0.274703557312253 1518 417 "lysine tRNA synthetase and inducible" +BW25113_4129__5prime lysU__5prime 0 4344535 4344732 -1 287 0.06060606060606061 198 12 "lysine tRNA synthetase and inducible" +BW25113_4129__3prime lysU__3prime 0 4342819 4343016 -1 4847 0.51010101010101 198 101 "lysine tRNA synthetase and inducible" +BW25113_4130 dtpC 0 4344771 4346228 -1 6303 0.18724279835390947 1458 273 "dipeptide and tripeptide permease" +BW25113_4130__5prime dtpC__5prime 0 4346229 4346426 -1 881 0.1414141414141414 198 28 "dipeptide and tripeptide permease" +BW25113_4130__3prime dtpC__3prime 0 4344573 4344770 -1 205 0.06565656565656566 198 13 "dipeptide and tripeptide permease" +BW25113_4131 cadA 0 4346287 4348434 -1 29347 0.26536312849162014 2148 570 "lysine decarboxylase and acid-inducible" +BW25113_4131__5prime cadA__5prime 0 4348435 4348632 -1 3903 0.3939393939393939 198 78 "lysine decarboxylase and acid-inducible" +BW25113_4131__3prime cadA__3prime 0 4346089 4346286 -1 631 0.16161616161616163 198 32 "lysine decarboxylase and acid-inducible" +BW25113_4132 cadB 0 4348514 4349848 -1 27932 0.41198501872659177 1335 550 "putative lysine/cadaverine transporter" +BW25113_4132__5prime cadB__5prime 0 4349849 4350046 -1 2565 0.2828282828282828 198 56 "putative lysine/cadaverine transporter" +BW25113_4132__3prime cadB__3prime 0 4348316 4348513 -1 2269 0.32323232323232326 198 64 "putative lysine/cadaverine transporter" +BW25113_4133 cadC 0 4350213 4351751 -1 36599 0.4223521767381416 1539 650 "cadBA operon transcriptional activator" +BW25113_4133__5prime cadC__5prime 0 4351752 4351949 -1 286 0.1111111111111111 198 22 "cadBA operon transcriptional activator" +BW25113_4133__3prime cadC__3prime 0 4350015 4350212 -1 340 0.10101010101010101 198 20 "cadBA operon transcriptional activator" +BW25113_4654 yjdQ 0 4352008 4352170 -1 2380 0.36809815950920244 163 60 "4352007_4352170" +BW25113_4654__5prime yjdQ__5prime 0 4352171 4352368 -1 767 0.1717171717171717 198 34 "4352007_4352170" +BW25113_4654__3prime yjdQ__3prime 0 4351810 4352007 -1 198 0.06565656565656566 198 13 "4352007_4352170" +BW25113_4134 pheU 0 4352368 4352443 -1 8 0.013157894736842105 76 1 "tRNA-Phe" +BW25113_4134__5prime pheU__5prime 0 4352444 4352641 -1 473 0.11616161616161616 198 23 "tRNA-Phe" +BW25113_4134__3prime pheU__3prime 0 4352170 4352367 -1 767 0.1717171717171717 198 34 "tRNA-Phe" +BW25113_4135 yjdC 0 4352550 4353125 -1 2688 0.19791666666666666 576 114 "putative transcriptional regulator" +BW25113_4135__5prime yjdC__5prime 0 4353126 4353323 -1 476 0.11616161616161616 198 23 "putative transcriptional regulator" +BW25113_4135__3prime yjdC__3prime 0 4352352 4352549 -1 116 0.020202020202020204 198 4 "putative transcriptional regulator" +BW25113_4136 dsbD 0 4353162 4354859 -1 7020 0.15606595995288575 1698 265 "fused thiol:disulfide interchange protein: activator of DsbC/conserved protein" +BW25113_4136__5prime dsbD__5prime 0 4354860 4355057 -1 1281 0.24242424242424243 198 48 "fused thiol:disulfide interchange protein: activator of DsbC/conserved protein" +BW25113_4136__3prime dsbD__3prime 0 4352964 4353161 -1 878 0.24242424242424243 198 48 "fused thiol:disulfide interchange protein: activator of DsbC/conserved protein" +BW25113_4137 cutA 0 4354835 4355173 -1 1831 0.22418879056047197 339 76 "divalent-cation tolerance protein and copper sensitivity" +BW25113_4137__5prime cutA__5prime 0 4355174 4355371 -1 1418 0.2878787878787879 198 57 "divalent-cation tolerance protein and copper sensitivity" +BW25113_4137__3prime cutA__3prime 0 4354637 4354834 -1 704 0.12121212121212122 198 24 "divalent-cation tolerance protein and copper sensitivity" +BW25113_4138 dcuA 0 4355289 4356590 -1 7304 0.21582181259600614 1302 281 "C4-dicarboxylate antiporter" +BW25113_4138__5prime dcuA__5prime 0 4356591 4356788 -1 361 0.08585858585858586 198 17 "C4-dicarboxylate antiporter" +BW25113_4138__3prime dcuA__3prime 0 4355091 4355288 -1 1242 0.25757575757575757 198 51 "C4-dicarboxylate antiporter" +4356303_4356607 4356303_4356607 0 4356304 4356607 1 806 0.14473684210526316 304 44 "4356303_4356607" +4356303_4356607__5prime 4356303_4356607__5prime 0 4356106 4356303 1 1396 0.2474747474747475 198 49 "4356303_4356607" +4356303_4356607__3prime 4356303_4356607__3prime 0 4356608 4356805 1 327 0.0707070707070707 198 14 "4356303_4356607" +BW25113_4139 aspA 0 4356708 4358144 -1 2603 0.09672929714683368 1437 139 "aspartate ammonia-lyase" +BW25113_4139__5prime aspA__5prime 0 4358145 4358342 -1 298 0.045454545454545456 198 9 "aspartate ammonia-lyase" +BW25113_4139__3prime aspA__3prime 0 4356510 4356707 -1 278 0.10101010101010101 198 20 "aspartate ammonia-lyase" +BW25113_4140 fxsA 0 4358481 4358957 1 1524 0.17819706498951782 477 85 "suppressor of F exclusion of phage T7" +BW25113_4140__5prime fxsA__5prime 0 4358283 4358480 1 191 0.06060606060606061 198 12 "suppressor of F exclusion of phage T7" +BW25113_4140__3prime fxsA__3prime 0 4358958 4359155 1 594 0.1717171717171717 198 34 "suppressor of F exclusion of phage T7" +BW25113_4141 yjeH 0 4358973 4360229 -1 6278 0.18615751789976134 1257 234 "putative transporter" +BW25113_4141__5prime yjeH__5prime 0 4360230 4360427 -1 131 0.050505050505050504 198 10 "putative transporter" +BW25113_4141__3prime yjeH__3prime 0 4358775 4358972 -1 496 0.1414141414141414 198 28 "putative transporter" +BW25113_4142 groS 0 4360505 4360798 1 18 0.01020408163265306 294 3 "Cpn10 chaperonin GroES and small subunit of GroESL" +BW25113_4142__5prime groS__5prime 0 4360307 4360504 1 172 0.06565656565656566 198 13 "Cpn10 chaperonin GroES and small subunit of GroESL" +BW25113_4142__3prime groS__3prime 0 4360799 4360996 1 188 0.050505050505050504 198 10 "Cpn10 chaperonin GroES and small subunit of GroESL" +BW25113_4143 groL 0 4360842 4362488 1 5 0.0006071645415907711 1647 1 "Cpn60 chaperonin GroEL and large subunit of GroESL" +BW25113_4143__5prime groL__5prime 0 4360644 4360841 1 206 0.06565656565656566 198 13 "Cpn60 chaperonin GroEL and large subunit of GroESL" +BW25113_4143__3prime groL__3prime 0 4362489 4362686 1 264 0.09090909090909091 198 18 "Cpn60 chaperonin GroEL and large subunit of GroESL" +BW25113_4144 yjeI 0 4362626 4362979 1 1064 0.1327683615819209 354 47 "DUF4156 family lipoprotein" +BW25113_4144__5prime yjeI__5prime 0 4362428 4362625 1 100 0.04040404040404041 198 8 "DUF4156 family lipoprotein" +BW25113_4144__3prime yjeI__3prime 0 4362980 4363177 1 461 0.12121212121212122 198 24 "DUF4156 family lipoprotein" +4363013_4363112 4363013_4363112 0 4363014 4363112 1 222 0.10101010101010101 99 10 "4363013_4363112" +4363013_4363112__5prime 4363013_4363112__5prime 0 4362816 4363013 1 604 0.14646464646464646 198 29 "4363013_4363112" +4363013_4363112__3prime 4363013_4363112__3prime 0 4363113 4363310 1 714 0.20707070707070707 198 41 "4363013_4363112" +BW25113_4145 yjeJ 0 4363182 4364051 -1 11677 0.332183908045977 870 289 "uncharacterized protein" +BW25113_4145__5prime yjeJ__5prime 0 4364052 4364249 -1 349 0.10606060606060606 198 21 "uncharacterized protein" +BW25113_4145__3prime yjeJ__3prime 0 4362984 4363181 -1 461 0.12121212121212122 198 24 "uncharacterized protein" +4364314_4364413 4364314_4364413 0 4364315 4364413 1 2880 0.2828282828282828 99 28 "4364314_4364413" +4364314_4364413__5prime 4364314_4364413__5prime 0 4364117 4364314 1 986 0.16666666666666666 198 33 "4364314_4364413" +4364314_4364413__3prime 4364314_4364413__3prime 0 4364414 4364611 1 801 0.11616161616161616 198 23 "4364314_4364413" +BW25113_4146 epmB 0 4364446 4365474 -1 1781 0.07580174927113703 1029 78 "EF-P-Lys34 lysylation protein; weak lysine 2 and 3-aminomutase" +BW25113_4146__5prime epmB__5prime 0 4365475 4365672 -1 71 0.025252525252525252 198 5 "EF-P-Lys34 lysylation protein; weak lysine 2 and 3-aminomutase" +BW25113_4146__3prime epmB__3prime 0 4364248 4364445 -1 3756 0.25252525252525254 198 50 "EF-P-Lys34 lysylation protein; weak lysine 2 and 3-aminomutase" +BW25113_4147 efp 0 4365516 4366082 1 142 0.02292768959435626 567 13 "polyproline-specific translation elongation factor EF-P" +BW25113_4147__5prime efp__5prime 0 4365318 4365515 1 196 0.07575757575757576 198 15 "polyproline-specific translation elongation factor EF-P" +BW25113_4147__3prime efp__3prime 0 4366083 4366280 1 486 0.12626262626262627 198 25 "polyproline-specific translation elongation factor EF-P" +BW25113_4410 ecnA 0 4366134 4366259 1 270 0.11904761904761904 126 15 "entericidin A membrane lipoprotein and antidote entericidin B" +BW25113_4410__5prime ecnA__5prime 0 4365936 4366133 1 265 0.06565656565656566 198 13 "entericidin A membrane lipoprotein and antidote entericidin B" +BW25113_4410__3prime ecnA__3prime 0 4366260 4366457 1 388 0.11616161616161616 198 23 "entericidin A membrane lipoprotein and antidote entericidin B" +BW25113_4411 ecnB 0 4366370 4366516 1 376 0.14285714285714285 147 21 "entericidin B membrane lipoprotein" +BW25113_4411__5prime ecnB__5prime 0 4366172 4366369 1 377 0.11616161616161616 198 23 "entericidin B membrane lipoprotein" +BW25113_4411__3prime ecnB__3prime 0 4366517 4366714 1 849 0.1414141414141414 198 28 "entericidin B membrane lipoprotein" +BW25113_4148 sugE 0 4366692 4367009 1 1721 0.21069182389937108 318 67 "multidrug efflux system protein" +BW25113_4148__5prime sugE__5prime 0 4366494 4366691 1 736 0.13636363636363635 198 27 "multidrug efflux system protein" +BW25113_4148__3prime sugE__3prime 0 4367010 4367207 1 576 0.15151515151515152 198 30 "multidrug efflux system protein" +BW25113_4149 blc 0 4367006 4367539 -1 1617 0.149812734082397 534 80 "outer membrane lipoprotein (lipocalin) and cell division and growth function" +BW25113_4149__5prime blc__5prime 0 4367540 4367737 -1 496 0.08585858585858586 198 17 "outer membrane lipoprotein (lipocalin) and cell division and growth function" +BW25113_4149__3prime blc__3prime 0 4366808 4367005 -1 1154 0.21717171717171718 198 43 "outer membrane lipoprotein (lipocalin) and cell division and growth function" +BW25113_4150 ampC 0 4367628 4368761 -1 3510 0.1455026455026455 1134 165 "penicillin-binding protein; beta-lactamase and intrinsically weak" +BW25113_4150__5prime ampC__5prime 0 4368762 4368959 -1 954 0.16161616161616163 198 32 "penicillin-binding protein; beta-lactamase and intrinsically weak" +BW25113_4150__3prime ampC__3prime 0 4367430 4367627 -1 272 0.06060606060606061 198 12 "penicillin-binding protein; beta-lactamase and intrinsically weak" +BW25113_4151 frdD 0 4368824 4369183 -1 2046 0.19722222222222222 360 71 "fumarate reductase (anaerobic) and membrane anchor subunit" +BW25113_4151__5prime frdD__5prime 0 4369184 4369381 -1 558 0.1414141414141414 198 28 "fumarate reductase (anaerobic) and membrane anchor subunit" +BW25113_4151__3prime frdD__3prime 0 4368626 4368823 -1 671 0.18181818181818182 198 36 "fumarate reductase (anaerobic) and membrane anchor subunit" +BW25113_4152 frdC 0 4369194 4369589 -1 1002 0.09848484848484848 396 39 "fumarate reductase (anaerobic) and membrane anchor subunit" +BW25113_4152__5prime frdC__5prime 0 4369590 4369787 -1 816 0.16666666666666666 198 33 "fumarate reductase (anaerobic) and membrane anchor subunit" +BW25113_4152__3prime frdC__3prime 0 4368996 4369193 -1 1115 0.2222222222222222 198 44 "fumarate reductase (anaerobic) and membrane anchor subunit" +BW25113_4153 frdB 0 4369600 4370334 -1 3241 0.17551020408163265 735 129 "fumarate reductase (anaerobic) and Fe-S subunit" +BW25113_4153__5prime frdB__5prime 0 4370335 4370532 -1 608 0.14646464646464646 198 29 "fumarate reductase (anaerobic) and Fe-S subunit" +BW25113_4153__3prime frdB__3prime 0 4369402 4369599 -1 523 0.06565656565656566 198 13 "fumarate reductase (anaerobic) and Fe-S subunit" +BW25113_4154 frdA 0 4370327 4372135 -1 7975 0.16970702045328911 1809 307 "fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit" +BW25113_4154__5prime frdA__5prime 0 4372136 4372333 -1 619 0.15151515151515152 198 30 "fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit" +BW25113_4154__3prime frdA__3prime 0 4370129 4370326 -1 899 0.20707070707070707 198 41 "fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit" +BW25113_4155 epmA 0 4372460 4373437 1 1493 0.10633946830265849 978 104 "Elongation Factor P Lys34 lysyltransferase" +BW25113_4155__5prime epmA__5prime 0 4372262 4372459 1 193 0.0707070707070707 198 14 "Elongation Factor P Lys34 lysyltransferase" +BW25113_4155__3prime epmA__3prime 0 4373438 4373635 1 14634 0.4393939393939394 198 87 "Elongation Factor P Lys34 lysyltransferase" +BW25113_4156 yjeM 0 4373656 4375158 1 30540 0.39986693280106456 1503 601 "putative transporter" +BW25113_4156__5prime yjeM__5prime 0 4373458 4373655 1 15184 0.51010101010101 198 101 "putative transporter" +BW25113_4156__3prime yjeM__3prime 0 4375159 4375356 1 544 0.15151515151515152 198 30 "putative transporter" +BW25113_4157 yjeN 0 4375210 4375524 1 863 0.15873015873015872 315 50 "uncharacterized protein" +BW25113_4157__5prime yjeN__5prime 0 4375012 4375209 1 745 0.20202020202020202 198 40 "uncharacterized protein" +BW25113_4157__3prime yjeN__3prime 0 4375525 4375722 1 660 0.12626262626262627 198 25 "uncharacterized protein" +BW25113_4158 yjeO 0 4375521 4375835 1 954 0.11746031746031746 315 37 "inner membrane protein" +BW25113_4158__5prime yjeO__5prime 0 4375323 4375520 1 723 0.18181818181818182 198 36 "inner membrane protein" +BW25113_4158__3prime yjeO__3prime 0 4375836 4376033 1 683 0.15656565656565657 198 31 "inner membrane protein" +4375835_4375855 4375835_4375855 0 4375836 4375855 1 69 0.1 20 2 "4375835_4375855" +4375835_4375855__5prime 4375835_4375855__5prime 0 4375638 4375835 1 624 0.12121212121212122 198 24 "4375835_4375855" +4375835_4375855__3prime 4375835_4375855__3prime 0 4375856 4376053 1 754 0.18686868686868688 198 37 "4375835_4375855" +BW25113_4159 mscM 0 4375864 4379187 -1 11294 0.1510228640192539 3324 502 "mechanosensitive channel protein and miniconductance" +BW25113_4159__5prime mscM__5prime 0 4379188 4379385 -1 821 0.15151515151515152 198 30 "mechanosensitive channel protein and miniconductance" +BW25113_4159__3prime mscM__3prime 0 4375666 4375863 -1 582 0.1111111111111111 198 22 "mechanosensitive channel protein and miniconductance" +BW25113_4160 psd 0 4379209 4380177 -1 595 0.025799793601651185 969 25 "phosphatidylserine decarboxylase" +BW25113_4160__5prime psd__5prime 0 4380178 4380375 -1 440 0.09595959595959595 198 19 "phosphatidylserine decarboxylase" +BW25113_4160__3prime psd__3prime 0 4379011 4379208 -1 632 0.13131313131313133 198 26 "phosphatidylserine decarboxylase" +BW25113_4161 rsgA 0 4380274 4381326 -1 375 0.023741690408357077 1053 25 "ribosome small subunit-dependent GTPase A" +BW25113_4161__5prime rsgA__5prime 0 4381327 4381524 -1 129 0.04040404040404041 198 8 "ribosome small subunit-dependent GTPase A" +BW25113_4161__3prime rsgA__3prime 0 4380076 4380273 -1 360 0.09090909090909091 198 18 "ribosome small subunit-dependent GTPase A" +BW25113_4162 orn 0 4381421 4381966 1 126 0.01098901098901099 546 6 "oligoribonuclease" +BW25113_4162__5prime orn__5prime 0 4381223 4381420 1 161 0.06060606060606061 198 12 "oligoribonuclease" +BW25113_4162__3prime orn__3prime 0 4381967 4382164 1 0 0.0 198 0 "oligoribonuclease" +BW25113_4163 glyV 0 4382177 4382252 1 147 0.15789473684210525 76 12 "tRNA-Gly" +BW25113_4163__5prime glyV__5prime 0 4381979 4382176 1 0 0.0 198 0 "tRNA-Gly" +BW25113_4163__3prime glyV__3prime 0 4382253 4382450 1 686 0.21717171717171718 198 43 "tRNA-Gly" +BW25113_4164 glyX 0 4382289 4382364 1 197 0.17105263157894737 76 13 "tRNA-Gly" +BW25113_4164__5prime glyX__5prime 0 4382091 4382288 1 179 0.08080808080808081 198 16 "tRNA-Gly" +BW25113_4164__3prime glyX__3prime 0 4382365 4382562 1 719 0.21717171717171718 198 43 "tRNA-Gly" +BW25113_4165 glyY 0 4382400 4382475 1 279 0.2631578947368421 76 20 "tRNA-Gly" +BW25113_4165__5prime glyY__5prime 0 4382202 4382399 1 493 0.15656565656565657 198 31 "tRNA-Gly" +BW25113_4165__3prime glyY__3prime 0 4382476 4382673 1 304 0.07575757575757576 198 15 "tRNA-Gly" +BW25113_4670 yjeV 0 4382709 4382762 1 61 0.09259259259259259 54 5 "uncharacterized protein" +BW25113_4670__5prime yjeV__5prime 0 4382511 4382708 1 298 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_4670__3prime yjeV__3prime 0 4382763 4382960 1 881 0.16666666666666666 198 33 "uncharacterized protein" +BW25113_4166 queG 0 4382745 4383884 -1 4324 0.1570175438596491 1140 179 "epoxyqueuosine reductase and cobalamine-stimulated; queosine biosynthesis" +BW25113_4166__5prime queG__5prime 0 4383885 4384082 -1 1506 0.24242424242424243 198 48 "epoxyqueuosine reductase and cobalamine-stimulated; queosine biosynthesis" +BW25113_4166__3prime queG__3prime 0 4382547 4382744 -1 182 0.04040404040404041 198 8 "epoxyqueuosine reductase and cobalamine-stimulated; queosine biosynthesis" +BW25113_4167 nnr 0 4383883 4385430 1 5685 0.14857881136950904 1548 230 "bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase" +BW25113_4167__5prime nnr__5prime 0 4383685 4383882 1 870 0.1717171717171717 198 34 "bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase" +BW25113_4167__3prime nnr__3prime 0 4385431 4385628 1 0 0.0 198 0 "bifunctional NAD(P)H-hydrate repair enzyme; C-terminal domain ADP-dependent (S)-NAD(P)H-hydrate dehydratase and N-terminal domain NAD(P)H-hydrate epimerase" +BW25113_4168 tsaE 0 4385402 4385863 1 60 0.010822510822510822 462 5 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein" +BW25113_4168__5prime tsaE__5prime 0 4385204 4385401 1 738 0.19696969696969696 198 39 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein" +BW25113_4168__3prime tsaE__3prime 0 4385864 4386061 1 519 0.13636363636363635 198 27 "tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; ADP binding protein" +BW25113_4169 amiB 0 4385882 4387219 1 5104 0.1681614349775785 1338 225 "N-acetylmuramoyl-l-alanine amidase II" +BW25113_4169__5prime amiB__5prime 0 4385684 4385881 1 245 0.03535353535353535 198 7 "N-acetylmuramoyl-l-alanine amidase II" +BW25113_4169__3prime amiB__3prime 0 4387220 4387417 1 662 0.16161616161616163 198 32 "N-acetylmuramoyl-l-alanine amidase II" +BW25113_4170 mutL 0 4387229 4389076 1 5466 0.12932900432900432 1848 239 "methyl-directed mismatch repair protein" +BW25113_4170__5prime mutL__5prime 0 4387031 4387228 1 987 0.2222222222222222 198 44 "methyl-directed mismatch repair protein" +BW25113_4170__3prime mutL__3prime 0 4389077 4389274 1 552 0.16666666666666666 198 33 "methyl-directed mismatch repair protein" +BW25113_4171 miaA 0 4389069 4390019 1 2916 0.1377497371188223 951 131 "delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase" +BW25113_4171__5prime miaA__5prime 0 4388871 4389068 1 942 0.15656565656565657 198 31 "delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase" +BW25113_4171__3prime miaA__3prime 0 4390020 4390217 1 623 0.08585858585858586 198 17 "delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase" +BW25113_4172 hfq 0 4390105 4390413 1 1581 0.18770226537216828 309 58 "global sRNA chaperone; HF-I and host factor for RNA phage Q beta replication" +BW25113_4172__5prime hfq__5prime 0 4389907 4390104 1 458 0.1111111111111111 198 22 "global sRNA chaperone; HF-I and host factor for RNA phage Q beta replication" +BW25113_4172__3prime hfq__3prime 0 4390414 4390611 1 1209 0.21717171717171718 198 43 "global sRNA chaperone; HF-I and host factor for RNA phage Q beta replication" +BW25113_4173 hflX 0 4390489 4391769 1 5847 0.21311475409836064 1281 273 "GTPase and stimulated by 50S subunit binding" +BW25113_4173__5prime hflX__5prime 0 4390291 4390488 1 1302 0.21717171717171718 198 43 "GTPase and stimulated by 50S subunit binding" +BW25113_4173__3prime hflX__3prime 0 4391770 4391967 1 723 0.18181818181818182 198 36 "GTPase and stimulated by 50S subunit binding" +BW25113_4174 hflK 0 4391855 4393114 1 5968 0.2015873015873016 1260 254 "modulator for HflB protease specific for phage lambda cII repressor" +BW25113_4174__5prime hflK__5prime 0 4391657 4391854 1 1259 0.2828282828282828 198 56 "modulator for HflB protease specific for phage lambda cII repressor" +BW25113_4174__3prime hflK__3prime 0 4393115 4393312 1 1349 0.16161616161616163 198 32 "modulator for HflB protease specific for phage lambda cII repressor" +BW25113_4175 hflC 0 4393117 4394121 1 4480 0.1791044776119403 1005 180 "modulator for HflB protease specific for phage lambda cII repressor" +BW25113_4175__5prime hflC__5prime 0 4392919 4393116 1 1448 0.29292929292929293 198 58 "modulator for HflB protease specific for phage lambda cII repressor" +BW25113_4175__3prime hflC__3prime 0 4394122 4394319 1 708 0.13131313131313133 198 26 "modulator for HflB protease specific for phage lambda cII repressor" +BW25113_4176 yjeT 0 4394203 4394400 1 559 0.11616161616161616 198 23 "DUF2065 family protein" +BW25113_4176__5prime yjeT__5prime 0 4394005 4394202 1 843 0.18181818181818182 198 36 "DUF2065 family protein" +BW25113_4176__3prime yjeT__3prime 0 4394401 4394598 1 11 0.005050505050505051 198 1 "DUF2065 family protein" +BW25113_4177 purA 0 4394504 4395802 1 811 0.053117782909930716 1299 69 "adenylosuccinate synthetase" +BW25113_4177__5prime purA__5prime 0 4394306 4394503 1 100 0.04040404040404041 198 8 "adenylosuccinate synthetase" +BW25113_4177__3prime purA__3prime 0 4395803 4396000 1 1055 0.16666666666666666 198 33 "adenylosuccinate synthetase" +BW25113_4178 nsrR 0 4396007 4396432 1 1462 0.13380281690140844 426 57 "nitric oxide-sensitive repressor for NO regulon" +BW25113_4178__5prime nsrR__5prime 0 4395809 4396006 1 1055 0.16666666666666666 198 33 "nitric oxide-sensitive repressor for NO regulon" +BW25113_4178__3prime nsrR__3prime 0 4396433 4396630 1 700 0.09595959595959595 198 19 "nitric oxide-sensitive repressor for NO regulon" +BW25113_4179 rnr 0 4396471 4398912 1 5061 0.1076986076986077 2442 263 "exoribonuclease R and RNase R" +BW25113_4179__5prime rnr__5prime 0 4396273 4396470 1 771 0.12626262626262627 198 25 "exoribonuclease R and RNase R" +BW25113_4179__3prime rnr__3prime 0 4398913 4399110 1 390 0.09090909090909091 198 18 "exoribonuclease R and RNase R" +4398969_4399067 4398969_4399067 0 4398970 4399067 1 177 0.09183673469387756 98 9 "4398969_4399067" +4398969_4399067__5prime 4398969_4399067__5prime 0 4398772 4398969 1 236 0.050505050505050504 198 10 "4398969_4399067" +4398969_4399067__3prime 4398969_4399067__3prime 0 4399068 4399265 1 454 0.0707070707070707 198 14 "4398969_4399067" +BW25113_4180 rlmB 0 4399092 4399823 1 3464 0.15846994535519127 732 116 '"23S rRNA mG2251 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_4180__5prime rlmB__5prime 0 4398894 4399091 1 416 0.09595959595959595 198 19 '"23S rRNA mG2251 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_4180__3prime rlmB__3prime 0 4399824 4400021 1 607 0.1111111111111111 198 22 '"23S rRNA mG2251 2''-O-ribose methyltransferase and SAM-dependent"' +BW25113_4181 yjfI 0 4399950 4400351 1 3749 0.2835820895522388 402 114 "DUF2170 family protein" +BW25113_4181__5prime yjfI__5prime 0 4399752 4399949 1 336 0.10606060606060606 198 21 "DUF2170 family protein" +BW25113_4181__3prime yjfI__3prime 0 4400352 4400549 1 2745 0.35353535353535354 198 70 "DUF2170 family protein" +BW25113_4182 yjfJ 0 4400370 4401068 1 7236 0.2932761087267525 699 205 "PspA/IM30 family protein" +BW25113_4182__5prime yjfJ__5prime 0 4400172 4400369 1 2954 0.3939393939393939 198 78 "PspA/IM30 family protein" +BW25113_4182__3prime yjfJ__3prime 0 4401069 4401266 1 713 0.16161616161616163 198 32 "PspA/IM30 family protein" +BW25113_4183 yjfK 0 4401119 4401778 1 4253 0.30454545454545456 660 201 "DUF2491 family protein" +BW25113_4183__5prime yjfK__5prime 0 4400921 4401118 1 716 0.19696969696969696 198 39 "DUF2491 family protein" +BW25113_4183__3prime yjfK__3prime 0 4401779 4401976 1 2692 0.29292929292929293 198 58 "DUF2491 family protein" +BW25113_4184 yjfL 0 4401796 4402194 1 7697 0.3558897243107769 399 142 "UPF0719 family inner membrane protein" +BW25113_4184__5prime yjfL__5prime 0 4401598 4401795 1 1129 0.3181818181818182 198 63 "UPF0719 family inner membrane protein" +BW25113_4184__3prime yjfL__3prime 0 4402195 4402392 1 2818 0.30808080808080807 198 61 "UPF0719 family inner membrane protein" +BW25113_4185 yjfM 0 4402204 4402842 1 5707 0.2222222222222222 639 142 "DUF1190 family protein" +BW25113_4185__5prime yjfM__5prime 0 4402006 4402203 1 2655 0.3838383838383838 198 76 "DUF1190 family protein" +BW25113_4185__3prime yjfM__3prime 0 4402843 4403040 1 539 0.15656565656565657 198 31 "DUF1190 family protein" +BW25113_4186 yjfC 0 4402845 4404008 1 3296 0.1323024054982818 1164 154 "ATP-Grasp family ATPase" +BW25113_4186__5prime yjfC__5prime 0 4402647 4402844 1 376 0.09090909090909091 198 18 "ATP-Grasp family ATPase" +BW25113_4186__3prime yjfC__3prime 0 4404009 4404206 1 478 0.12121212121212122 198 24 "ATP-Grasp family ATPase" +BW25113_4187 aidB 0 4404092 4405717 1 5086 0.12976629766297662 1626 211 "DNA alkylation damage repair protein; flavin-containing DNA binding protein and weak isovaleryl CoA dehydrogenase" +BW25113_4187__5prime aidB__5prime 0 4403894 4404091 1 557 0.1717171717171717 198 34 "DNA alkylation damage repair protein; flavin-containing DNA binding protein and weak isovaleryl CoA dehydrogenase" +BW25113_4187__3prime aidB__3prime 0 4405718 4405915 1 456 0.16161616161616163 198 32 "DNA alkylation damage repair protein; flavin-containing DNA binding protein and weak isovaleryl CoA dehydrogenase" +4405774_4405808 4405774_4405808 0 4405775 4405808 1 0 0.0 34 0 "4405774_4405808" +4405774_4405808__5prime 4405774_4405808__5prime 0 4405577 4405774 1 505 0.13131313131313133 198 26 "4405774_4405808" +4405774_4405808__3prime 4405774_4405808__3prime 0 4405809 4406006 1 654 0.20707070707070707 198 41 "4405774_4405808" +BW25113_4188 yjfN 0 4405834 4406109 -1 1318 0.21014492753623187 276 58 "DUF1471 family periplasmic protein" +BW25113_4188__5prime yjfN__5prime 0 4406110 4406307 -1 2061 0.23737373737373738 198 47 "DUF1471 family periplasmic protein" +BW25113_4188__3prime yjfN__3prime 0 4405636 4405833 -1 398 0.12121212121212122 198 24 "DUF1471 family periplasmic protein" +BW25113_4189 bsmA 0 4406258 4406587 -1 2508 0.23636363636363636 330 78 "bioflm peroxide resistance protein" +BW25113_4189__5prime bsmA__5prime 0 4406588 4406785 -1 716 0.13636363636363635 198 27 "bioflm peroxide resistance protein" +BW25113_4189__3prime bsmA__3prime 0 4406060 4406257 -1 1305 0.16666666666666666 198 33 "bioflm peroxide resistance protein" +BW25113_4190 yjfP 0 4406769 4407518 1 2918 0.14133333333333334 750 106 "acyl CoA esterase" +BW25113_4190__5prime yjfP__5prime 0 4406571 4406768 1 801 0.15151515151515152 198 30 "acyl CoA esterase" +BW25113_4190__3prime yjfP__3prime 0 4407519 4407716 1 371 0.09090909090909091 198 18 "acyl CoA esterase" +BW25113_4191 ulaR 0 4407515 4408270 -1 910 0.05952380952380952 756 45 "transcriptional repressor for the L-ascorbate utilization (ula) divergent operon" +BW25113_4191__5prime ulaR__5prime 0 4408271 4408468 -1 339 0.08080808080808081 198 16 "transcriptional repressor for the L-ascorbate utilization (ula) divergent operon" +BW25113_4191__3prime ulaR__3prime 0 4407317 4407514 -1 1151 0.16666666666666666 198 33 "transcriptional repressor for the L-ascorbate utilization (ula) divergent operon" +BW25113_4192 ulaG 0 4408378 4409442 -1 2484 0.10516431924882629 1065 112 "L-ascorbate 6-phosphate lactonase" +BW25113_4192__5prime ulaG__5prime 0 4409443 4409640 -1 21 0.010101010101010102 198 2 "L-ascorbate 6-phosphate lactonase" +BW25113_4192__3prime ulaG__3prime 0 4408180 4408377 -1 158 0.050505050505050504 198 10 "L-ascorbate 6-phosphate lactonase" +BW25113_4193 ulaA 0 4409797 4411194 1 4939 0.13304721030042918 1398 186 "L-ascorbate-specific enzyme IIC permease component of PTS" +BW25113_4193__5prime ulaA__5prime 0 4409599 4409796 1 1053 0.18181818181818182 198 36 "L-ascorbate-specific enzyme IIC permease component of PTS" +BW25113_4193__3prime ulaA__3prime 0 4411195 4411392 1 637 0.12121212121212122 198 24 "L-ascorbate-specific enzyme IIC permease component of PTS" +BW25113_4194 ulaB 0 4411210 4411515 1 809 0.10784313725490197 306 33 "L-ascorbate-specific enzyme IIB component of PTS" +BW25113_4194__5prime ulaB__5prime 0 4411012 4411209 1 291 0.09595959595959595 198 19 "L-ascorbate-specific enzyme IIB component of PTS" +BW25113_4194__3prime ulaB__3prime 0 4411516 4411713 1 766 0.16666666666666666 198 33 "L-ascorbate-specific enzyme IIB component of PTS" +BW25113_4195 ulaC 0 4411525 4411989 1 1888 0.16344086021505377 465 76 "L-ascorbate-specific enzyme IIA component of PTS" +BW25113_4195__5prime ulaC__5prime 0 4411327 4411524 1 324 0.08585858585858586 198 17 "L-ascorbate-specific enzyme IIA component of PTS" +BW25113_4195__3prime ulaC__3prime 0 4411990 4412187 1 444 0.1414141414141414 198 28 "L-ascorbate-specific enzyme IIA component of PTS" +BW25113_4196 ulaD 0 4412003 4412653 1 2107 0.12442396313364056 651 81 "3-keto-L-gulonate 6-phosphate decarboxylase" +BW25113_4196__5prime ulaD__5prime 0 4411805 4412002 1 999 0.19696969696969696 198 39 "3-keto-L-gulonate 6-phosphate decarboxylase" +BW25113_4196__3prime ulaD__3prime 0 4412654 4412851 1 603 0.13131313131313133 198 26 "3-keto-L-gulonate 6-phosphate decarboxylase" +BW25113_4197 ulaE 0 4412663 4413517 1 1956 0.11812865497076024 855 101 "L-xylulose 5-phosphate 3-epimerase" +BW25113_4197__5prime ulaE__5prime 0 4412465 4412662 1 654 0.08080808080808081 198 16 "L-xylulose 5-phosphate 3-epimerase" +BW25113_4197__3prime ulaE__3prime 0 4413518 4413715 1 558 0.13131313131313133 198 26 "L-xylulose 5-phosphate 3-epimerase" +BW25113_4198 ulaF 0 4413517 4414203 1 3021 0.17903930131004367 687 123 "L-ribulose 5-phosphate 4-epimerase" +BW25113_4198__5prime ulaF__5prime 0 4413319 4413516 1 358 0.09595959595959595 198 19 "L-ribulose 5-phosphate 4-epimerase" +BW25113_4198__3prime ulaF__3prime 0 4414204 4414401 1 1043 0.21717171717171718 198 43 "L-ribulose 5-phosphate 4-epimerase" +BW25113_4199 yjfY 0 4414333 4414608 -1 2789 0.286231884057971 276 79 "YhcN family protein and periplasmic" +BW25113_4199__5prime yjfY__5prime 0 4414609 4414806 -1 502 0.13131313131313133 198 26 "YhcN family protein and periplasmic" +BW25113_4199__3prime yjfY__3prime 0 4414135 4414332 -1 1188 0.22727272727272727 198 45 "YhcN family protein and periplasmic" +BW25113_4200 rpsF 0 4414935 4415330 1 12 0.005050505050505051 396 2 "30S ribosomal subunit protein S6" +BW25113_4200__5prime rpsF__5prime 0 4414737 4414934 1 448 0.06060606060606061 198 12 "30S ribosomal subunit protein S6" +BW25113_4200__3prime rpsF__3prime 0 4415331 4415528 1 6 0.005050505050505051 198 1 "30S ribosomal subunit protein S6" +BW25113_4201 priB 0 4415337 4415651 1 6 0.0031746031746031746 315 1 "primosomal protein N" +BW25113_4201__5prime priB__5prime 0 4415139 4415336 1 12 0.010101010101010102 198 2 "primosomal protein N" +BW25113_4201__3prime priB__3prime 0 4415652 4415849 1 10 0.010101010101010102 198 2 "primosomal protein N" +BW25113_4202 rpsR 0 4415656 4415883 1 111 0.043859649122807015 228 10 "30S ribosomal subunit protein S18" +BW25113_4202__5prime rpsR__5prime 0 4415458 4415655 1 0 0.0 198 0 "30S ribosomal subunit protein S18" +BW25113_4202__3prime rpsR__3prime 0 4415884 4416081 1 263 0.10606060606060606 198 21 "30S ribosomal subunit protein S18" +BW25113_4203 rplI 0 4415925 4416374 1 961 0.14888888888888888 450 67 "50S ribosomal subunit protein L9" +BW25113_4203__5prime rplI__5prime 0 4415727 4415924 1 111 0.050505050505050504 198 10 "50S ribosomal subunit protein L9" +BW25113_4203__3prime rplI__3prime 0 4416375 4416572 1 1955 0.3282828282828283 198 65 "50S ribosomal subunit protein L9" +BW25113_4204 yjfZ 0 4416445 4417239 -1 11399 0.38113207547169814 795 303 "uncharacterized protein" +BW25113_4204__5prime yjfZ__5prime 0 4417240 4417437 -1 1758 0.15656565656565657 198 31 "uncharacterized protein" +BW25113_4204__3prime yjfZ__3prime 0 4416247 4416444 -1 526 0.1717171717171717 198 34 "uncharacterized protein" +BW25113_4205 ytfA 0 4417511 4417912 1 4285 0.23880597014925373 402 96 "4417510_4417912" +BW25113_4205__5prime ytfA__5prime 0 4417313 4417510 1 2237 0.25252525252525254 198 50 "4417510_4417912" +BW25113_4205__3prime ytfA__3prime 0 4417913 4418110 1 870 0.15151515151515152 198 30 "4417510_4417912" +BW25113_4206 ytfB 0 4417896 4418534 -1 2136 0.12519561815336464 639 80 "OapA family protein" +BW25113_4206__5prime ytfB__5prime 0 4418535 4418732 -1 880 0.14646464646464646 198 29 "OapA family protein" +BW25113_4206__3prime ytfB__3prime 0 4417698 4417895 -1 3638 0.3838383838383838 198 76 "OapA family protein" +BW25113_4207 fklB 0 4418752 4419372 1 1724 0.11755233494363929 621 73 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_4207__5prime fklB__5prime 0 4418554 4418751 1 836 0.13636363636363635 198 27 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_4207__3prime fklB__3prime 0 4419373 4419570 1 133 0.050505050505050504 198 10 "FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" +BW25113_4208 cycA 0 4419681 4421093 1 3313 0.10898796886058032 1413 154 "D-alanine/D-serine/glycine transporter" +BW25113_4208__5prime cycA__5prime 0 4419483 4419680 1 498 0.09090909090909091 198 18 "D-alanine/D-serine/glycine transporter" +BW25113_4208__3prime cycA__3prime 0 4421094 4421291 1 460 0.09090909090909091 198 18 "D-alanine/D-serine/glycine transporter" +4421105_4421130 4421105_4421130 0 4421106 4421130 1 7 0.04 25 1 "4421105_4421130" +4421105_4421130__5prime 4421105_4421130__5prime 0 4420908 4421105 1 866 0.17676767676767677 198 35 "4421105_4421130" +4421105_4421130__3prime 4421105_4421130__3prime 0 4421131 4421328 1 473 0.09595959595959595 198 19 "4421105_4421130" +BW25113_4209 ytfE 0 4421138 4421800 -1 1240 0.0784313725490196 663 52 "iron-sulfur cluster repair protein RIC" +BW25113_4209__5prime ytfE__5prime 0 4421801 4421998 -1 178 0.06060606060606061 198 12 "iron-sulfur cluster repair protein RIC" +BW25113_4209__3prime ytfE__3prime 0 4420940 4421137 -1 712 0.16161616161616163 198 32 "iron-sulfur cluster repair protein RIC" +BW25113_4210 ytfF 0 4421908 4422873 -1 2653 0.11594202898550725 966 112 "DMT transporter family inner membrane protein" +BW25113_4210__5prime ytfF__5prime 0 4422874 4423071 -1 288 0.09595959595959595 198 19 "DMT transporter family inner membrane protein" +BW25113_4210__3prime ytfF__3prime 0 4421710 4421907 -1 195 0.050505050505050504 198 10 "DMT transporter family inner membrane protein" +BW25113_4211 qorB 0 4422981 4423841 -1 2193 0.1254355400696864 861 108 "NAD(P)H:quinone oxidoreductase" +BW25113_4211__5prime qorB__5prime 0 4423842 4424039 -1 46 0.015151515151515152 198 3 "NAD(P)H:quinone oxidoreductase" +BW25113_4211__3prime qorB__3prime 0 4422783 4422980 -1 456 0.08080808080808081 198 16 "NAD(P)H:quinone oxidoreductase" +BW25113_4212 ytfH 0 4423930 4424310 1 514 0.08398950131233596 381 32 "DUF24 family HxlR-type putative transcriptional regulator" +BW25113_4212__5prime ytfH__5prime 0 4423732 4423929 1 39 0.025252525252525252 198 5 "DUF24 family HxlR-type putative transcriptional regulator" +BW25113_4212__3prime ytfH__3prime 0 4424311 4424508 1 1068 0.17676767676767677 198 35 "DUF24 family HxlR-type putative transcriptional regulator" +4424312_4424423 4424312_4424423 0 4424313 4424423 1 774 0.2702702702702703 111 30 "4424312_4424423" +4424312_4424423__5prime 4424312_4424423__5prime 0 4424115 4424312 1 352 0.12121212121212122 198 24 "4424312_4424423" +4424312_4424423__3prime 4424312_4424423__3prime 0 4424424 4424621 1 441 0.045454545454545456 198 9 "4424312_4424423" +BW25113_4213 cpdB 0 4424439 4426382 -1 13242 0.227880658436214 1944 443 '"2'':3''-cyclic-nucleotide 2''-phosphodiesterase"' +BW25113_4213__5prime cpdB__5prime 0 4426383 4426580 -1 1832 0.2676767676767677 198 53 '"2'':3''-cyclic-nucleotide 2''-phosphodiesterase"' +BW25113_4213__3prime cpdB__3prime 0 4424241 4424438 -1 940 0.20707070707070707 198 41 '"2'':3''-cyclic-nucleotide 2''-phosphodiesterase"' +4425719_4426369 4425719_4426369 0 4425720 4426369 1 7656 0.32461538461538464 650 211 "4425719_4426369" +4425719_4426369__5prime 4425719_4426369__5prime 0 4425522 4425719 1 1280 0.25252525252525254 198 50 "4425719_4426369" +4425719_4426369__3prime 4425719_4426369__3prime 0 4426370 4426567 1 1715 0.26262626262626265 198 52 "4425719_4426369" +BW25113_4214 cysQ 0 4426572 4427312 1 6890 0.2550607287449393 741 189 '"3''(2'') and 5''-bisphosphate nucleotidase"' +BW25113_4214__5prime cysQ__5prime 0 4426374 4426571 1 1703 0.25252525252525254 198 50 '"3''(2'') and 5''-bisphosphate nucleotidase"' +BW25113_4214__3prime cysQ__3prime 0 4427313 4427510 1 346 0.10606060606060606 198 21 '"3''(2'') and 5''-bisphosphate nucleotidase"' +BW25113_4215 ytfI 0 4427524 4428462 1 2673 0.14589989350372737 939 137 "uncharacterized protein" +BW25113_4215__5prime ytfI__5prime 0 4427326 4427523 1 262 0.08585858585858586 198 17 "uncharacterized protein" +BW25113_4215__3prime ytfI__3prime 0 4428463 4428660 1 3124 0.3787878787878788 198 75 "uncharacterized protein" +BW25113_4216 ytfJ 0 4428525 4429079 -1 5103 0.24504504504504504 555 136 "putative transcriptional regulator" +BW25113_4216__5prime ytfJ__5prime 0 4429080 4429277 -1 646 0.0707070707070707 198 14 "putative transcriptional regulator" +BW25113_4216__3prime ytfJ__3prime 0 4428327 4428524 -1 797 0.1717171717171717 198 34 "putative transcriptional regulator" +BW25113_4217 ytfK 0 4429404 4429610 1 1458 0.1932367149758454 207 40 "DUF1107 family protein" +BW25113_4217__5prime ytfK__5prime 0 4429206 4429403 1 1212 0.16161616161616163 198 32 "DUF1107 family protein" +BW25113_4217__3prime ytfK__3prime 0 4429611 4429808 1 899 0.14646464646464646 198 29 "DUF1107 family protein" +BW25113_4218 ytfL 0 4429689 4431032 -1 3722 0.1212797619047619 1344 163 "UPF0053 family inner membrane protein" +BW25113_4218__5prime ytfL__5prime 0 4431033 4431230 -1 400 0.10606060606060606 198 21 "UPF0053 family inner membrane protein" +BW25113_4218__3prime ytfL__3prime 0 4429491 4429688 -1 950 0.14646464646464646 198 29 "UPF0053 family inner membrane protein" +4431209_4431307 4431209_4431307 0 4431210 4431307 1 182 0.11224489795918367 98 11 "4431209_4431307" +4431209_4431307__5prime 4431209_4431307__5prime 0 4431012 4431209 1 399 0.10606060606060606 198 21 "4431209_4431307" +4431209_4431307__3prime 4431209_4431307__3prime 0 4431308 4431505 1 490 0.12626262626262627 198 25 "4431209_4431307" +BW25113_4219 msrA 0 4431355 4431993 -1 1889 0.13458528951486698 639 86 "methionine sulfoxide reductase A" +BW25113_4219__5prime msrA__5prime 0 4431994 4432191 -1 234 0.06060606060606061 198 12 "methionine sulfoxide reductase A" +BW25113_4219__3prime msrA__3prime 0 4431157 4431354 -1 275 0.06565656565656566 198 13 "methionine sulfoxide reductase A" +BW25113_4220 tamA 0 4432199 4433932 1 5506 0.1314878892733564 1734 228 "translocation and assembly module for autotransporter export and outer membrane subunit" +BW25113_4220__5prime tamA__5prime 0 4432001 4432198 1 218 0.050505050505050504 198 10 "translocation and assembly module for autotransporter export and outer membrane subunit" +BW25113_4220__3prime tamA__3prime 0 4433933 4434130 1 444 0.09090909090909091 198 18 "translocation and assembly module for autotransporter export and outer membrane subunit" +BW25113_4221 tamB 0 4433929 4437708 1 14830 0.1544973544973545 3780 584 "translocation and assembly module for autotransporter export and inner membrane subunit" +BW25113_4221__5prime tamB__5prime 0 4433731 4433928 1 91 0.03535353535353535 198 7 "translocation and assembly module for autotransporter export and inner membrane subunit" +BW25113_4221__3prime tamB__3prime 0 4437709 4437906 1 881 0.23737373737373738 198 47 "translocation and assembly module for autotransporter export and inner membrane subunit" +BW25113_4222 ytfP 0 4437711 4438052 1 1617 0.2309941520467836 342 79 "GGCT-like protein" +BW25113_4222__5prime ytfP__5prime 0 4437513 4437710 1 1298 0.24242424242424243 198 48 "GGCT-like protein" +BW25113_4222__3prime ytfP__3prime 0 4438053 4438250 1 592 0.1111111111111111 198 22 "GGCT-like protein" +BW25113_4224 chpS 0 4438264 4438515 1 582 0.0873015873015873 252 22 "antitoxin of the ChpBS toxin-antitoxin system" +BW25113_4224__5prime chpS__5prime 0 4438066 4438263 1 605 0.09595959595959595 198 19 "antitoxin of the ChpBS toxin-antitoxin system" +BW25113_4224__3prime chpS__3prime 0 4438516 4438713 1 870 0.13636363636363635 198 27 "antitoxin of the ChpBS toxin-antitoxin system" +BW25113_4225 chpB 0 4438509 4438859 1 1597 0.16809116809116809 351 59 "toxin of the ChpB-ChpS toxin-antitoxin system" +BW25113_4225__5prime chpB__5prime 0 4438311 4438508 1 331 0.07575757575757576 198 15 "toxin of the ChpB-ChpS toxin-antitoxin system" +BW25113_4225__3prime chpB__3prime 0 4438860 4439057 1 104 0.04040404040404041 198 8 "toxin of the ChpB-ChpS toxin-antitoxin system" +BW25113_4226 ppa 0 4438939 4439469 -1 20 0.0018832391713747645 531 1 "inorganic pyrophosphatase" +BW25113_4226__5prime ppa__5prime 0 4439470 4439667 -1 357 0.11616161616161616 198 23 "inorganic pyrophosphatase" +BW25113_4226__3prime ppa__3prime 0 4438741 4438938 -1 797 0.18686868686868688 198 37 "inorganic pyrophosphatase" +BW25113_4227 ytfQ 0 4439779 4440735 1 1907 0.08150470219435736 957 78 "galactofuranose binding proteint: periplasmic-binding component of ABC superfamily" +BW25113_4227__5prime ytfQ__5prime 0 4439581 4439778 1 550 0.10606060606060606 198 21 "galactofuranose binding proteint: periplasmic-binding component of ABC superfamily" +BW25113_4227__3prime ytfQ__3prime 0 4440736 4440933 1 576 0.15656565656565657 198 31 "galactofuranose binding proteint: periplasmic-binding component of ABC superfamily" +4440760_4440845 4440760_4440845 0 4440761 4440845 1 306 0.17647058823529413 85 15 "4440760_4440845" +4440760_4440845__5prime 4440760_4440845__5prime 0 4440563 4440760 1 811 0.10101010101010101 198 20 "4440760_4440845" +4440760_4440845__3prime 4440760_4440845__3prime 0 4440846 4441043 1 680 0.15656565656565657 198 31 "4440760_4440845" +BW25113_4485 ytfR 0 4440875 4442377 1 2924 0.09248170326014638 1503 139 "putative ABC superfamily sugar transporter ATP-binding subunit" +BW25113_4485__5prime ytfR__5prime 0 4440677 4440874 1 887 0.15656565656565657 198 31 "putative ABC superfamily sugar transporter ATP-binding subunit" +BW25113_4485__3prime ytfR__3prime 0 4442378 4442575 1 327 0.09595959595959595 198 19 "putative ABC superfamily sugar transporter ATP-binding subunit" +BW25113_4230 ytfT 0 4442388 4443413 1 1656 0.08284600389863547 1026 85 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_4230__5prime ytfT__5prime 0 4442190 4442387 1 389 0.10606060606060606 198 21 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_4230__3prime ytfT__3prime 0 4443414 4443611 1 392 0.1414141414141414 198 28 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_4231 yjfF 0 4443400 4444395 1 2858 0.11345381526104417 996 113 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_4231__5prime yjfF__5prime 0 4443202 4443399 1 312 0.1111111111111111 198 22 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_4231__3prime yjfF__3prime 0 4444396 4444593 1 468 0.12626262626262627 198 25 "inner membrane putative ABC superfamily sugar transporter permease" +BW25113_4232 fbp 0 4444428 4445426 -1 3001 0.12112112112112113 999 121 "fructose-1 and 6-bisphosphatase I" +BW25113_4232__5prime fbp__5prime 0 4445427 4445624 -1 300 0.11616161616161616 198 23 "fructose-1 and 6-bisphosphatase I" +BW25113_4232__3prime fbp__3prime 0 4444230 4444427 -1 389 0.11616161616161616 198 23 "fructose-1 and 6-bisphosphatase I" +BW25113_4233 mpl 0 4445602 4446975 1 4225 0.14410480349344978 1374 198 "UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase" +BW25113_4233__5prime mpl__5prime 0 4445404 4445601 1 293 0.1111111111111111 198 22 "UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase" +BW25113_4233__3prime mpl__3prime 0 4446976 4447173 1 386 0.10606060606060606 198 21 "UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase" +4447001_4447085 4447001_4447085 0 4447002 4447085 1 105 0.10714285714285714 84 9 "4447001_4447085" +4447001_4447085__5prime 4447001_4447085__5prime 0 4446804 4447001 1 447 0.14646464646464646 198 29 "4447001_4447085" +4447001_4447085__3prime 4447001_4447085__3prime 0 4447086 4447283 1 654 0.10101010101010101 198 20 "4447001_4447085" +BW25113_4234 yjgA 0 4447131 4447682 -1 1898 0.11775362318840579 552 65 "ribosome-associated UPF0307 family protein" +BW25113_4234__5prime yjgA__5prime 0 4447683 4447880 -1 623 0.11616161616161616 198 23 "ribosome-associated UPF0307 family protein" +BW25113_4234__3prime yjgA__3prime 0 4446933 4447130 -1 359 0.10101010101010101 198 20 "ribosome-associated UPF0307 family protein" +BW25113_4235 pmbA 0 4447776 4449128 1 5204 0.13821138211382114 1353 187 "putative antibiotic peptide MccB17 maturation peptidase" +BW25113_4235__5prime pmbA__5prime 0 4447578 4447775 1 270 0.0707070707070707 198 14 "putative antibiotic peptide MccB17 maturation peptidase" +BW25113_4235__3prime pmbA__3prime 0 4449129 4449326 1 887 0.2222222222222222 198 44 "putative antibiotic peptide MccB17 maturation peptidase" +BW25113_4236 cybC 0 4449307 4449672 1 987 0.1366120218579235 366 50 "4449306_4449672" +BW25113_4236__5prime cybC__5prime 0 4449109 4449306 1 784 0.18181818181818182 198 36 "4449306_4449672" +BW25113_4236__3prime cybC__3prime 0 4449673 4449870 1 528 0.16161616161616163 198 32 "4449306_4449672" +BW25113_4237 nrdG 0 4449717 4450181 -1 1606 0.12688172043010754 465 59 "anaerobic ribonucleotide reductase activating protein" +BW25113_4237__5prime nrdG__5prime 0 4450182 4450379 -1 450 0.1111111111111111 198 22 "anaerobic ribonucleotide reductase activating protein" +BW25113_4237__3prime nrdG__3prime 0 4449519 4449716 -1 646 0.1414141414141414 198 28 "anaerobic ribonucleotide reductase activating protein" +4450231_4450315 4450231_4450315 0 4450232 4450315 1 190 0.11904761904761904 84 10 "4450231_4450315" +4450231_4450315__5prime 4450231_4450315__5prime 0 4450034 4450231 1 834 0.15151515151515152 198 30 "4450231_4450315" +4450231_4450315__3prime 4450231_4450315__3prime 0 4450316 4450513 1 449 0.07575757575757576 198 15 "4450231_4450315" +BW25113_4238 nrdD 0 4450339 4452477 -1 5646 0.11079943899018233 2139 237 "anaerobic ribonucleoside-triphosphate reductase" +BW25113_4238__5prime nrdD__5prime 0 4452478 4452675 -1 214 0.04040404040404041 198 8 "anaerobic ribonucleoside-triphosphate reductase" +BW25113_4238__3prime nrdD__3prime 0 4450141 4450338 -1 971 0.15656565656565657 198 31 "anaerobic ribonucleoside-triphosphate reductase" +BW25113_4239 treC 0 4452871 4454526 -1 4090 0.10386473429951691 1656 172 "trehalose-6-P hydrolase" +BW25113_4239__5prime treC__5prime 0 4454527 4454724 -1 278 0.08080808080808081 198 16 "trehalose-6-P hydrolase" +BW25113_4239__3prime treC__3prime 0 4452673 4452870 -1 105 0.045454545454545456 198 9 "trehalose-6-P hydrolase" +BW25113_4240 treB 0 4454576 4455997 -1 3352 0.12376933895921238 1422 176 "fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component" +BW25113_4240__5prime treB__5prime 0 4455998 4456195 -1 122 0.050505050505050504 198 10 "fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component" +BW25113_4240__3prime treB__3prime 0 4454378 4454575 -1 634 0.1111111111111111 198 22 "fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component" +BW25113_4241 treR 0 4456116 4457063 -1 3912 0.14556962025316456 948 138 "trehalose 6-phosphate-inducible trehalose regulon transcriptional repressor" +BW25113_4241__5prime treR__5prime 0 4457064 4457261 -1 2494 0.3282828282828283 198 65 "trehalose 6-phosphate-inducible trehalose regulon transcriptional repressor" +BW25113_4241__3prime treR__3prime 0 4455918 4456115 -1 101 0.04040404040404041 198 8 "trehalose 6-phosphate-inducible trehalose regulon transcriptional repressor" +BW25113_4702 mgtL 0 4457248 4457301 1 839 0.48148148148148145 54 26 "regulatory leader peptide for mgtA" +BW25113_4702__5prime mgtL__5prime 0 4457050 4457247 1 1955 0.2727272727272727 198 54 "regulatory leader peptide for mgtA" +BW25113_4702__3prime mgtL__3prime 0 4457302 4457499 1 4792 0.48484848484848486 198 96 "regulatory leader peptide for mgtA" +BW25113_4242 mgtA 0 4457442 4460138 1 12844 0.19021134593993325 2697 513 "magnesium transporter" +BW25113_4242__5prime mgtA__5prime 0 4457244 4457441 1 5033 0.5555555555555556 198 110 "magnesium transporter" +BW25113_4242__3prime mgtA__3prime 0 4460139 4460336 1 555 0.12626262626262627 198 25 "magnesium transporter" +4460197_4460285 4460197_4460285 0 4460198 4460285 1 193 0.10227272727272728 88 9 "4460197_4460285" +4460197_4460285__5prime 4460197_4460285__5prime 0 4460000 4460197 1 572 0.15151515151515152 198 30 "4460197_4460285" +4460197_4460285__3prime 4460197_4460285__3prime 0 4460286 4460483 1 139 0.050505050505050504 198 10 "4460197_4460285" +BW25113_4243 ridA 0 4460344 4460730 -1 377 0.06201550387596899 387 24 "enamine/imine deaminase and reaction intermediate detoxification" +BW25113_4243__5prime ridA__5prime 0 4460731 4460928 -1 324 0.10101010101010101 198 20 "enamine/imine deaminase and reaction intermediate detoxification" +BW25113_4243__3prime ridA__3prime 0 4460146 4460343 -1 555 0.12626262626262627 198 25 "enamine/imine deaminase and reaction intermediate detoxification" +BW25113_4244 pyrI 0 4460803 4461264 -1 1083 0.12337662337662338 462 57 "aspartate carbamoyltransferase and regulatory subunit" +BW25113_4244__5prime pyrI__5prime 0 4461265 4461462 -1 376 0.10606060606060606 198 21 "aspartate carbamoyltransferase and regulatory subunit" +BW25113_4244__3prime pyrI__3prime 0 4460605 4460802 -1 335 0.10606060606060606 198 21 "aspartate carbamoyltransferase and regulatory subunit" +BW25113_4245 pyrB 0 4461277 4462212 -1 1970 0.11538461538461539 936 108 "aspartate carbamoyltransferase and catalytic subunit" +BW25113_4245__5prime pyrB__5prime 0 4462213 4462410 -1 578 0.12626262626262627 198 25 "aspartate carbamoyltransferase and catalytic subunit" +BW25113_4245__3prime pyrB__3prime 0 4461079 4461276 -1 331 0.12626262626262627 198 25 "aspartate carbamoyltransferase and catalytic subunit" +BW25113_4246 pyrL 0 4462216 4462350 -1 449 0.1259259259259259 135 17 "pyrBI operon leader peptide" +BW25113_4246__5prime pyrL__5prime 0 4462351 4462548 -1 273 0.08080808080808081 198 16 "pyrBI operon leader peptide" +BW25113_4246__3prime pyrL__3prime 0 4462018 4462215 -1 552 0.11616161616161616 198 23 "pyrBI operon leader peptide" +BW25113_4248 yjgH 0 4462631 4463026 -1 964 0.09848484848484848 396 39 "UPF0131 family protein" +BW25113_4248__5prime yjgH__5prime 0 4463027 4463224 -1 321 0.045454545454545456 198 9 "UPF0131 family protein" +BW25113_4248__3prime yjgH__3prime 0 4462433 4462630 -1 770 0.13636363636363635 198 27 "UPF0131 family protein" +BW25113_4249 bdcA 0 4463157 4463870 -1 1242 0.09103641456582633 714 65 "c-di-GMP-binding biofilm dispersal mediator protein" +BW25113_4249__5prime bdcA__5prime 0 4463871 4464068 -1 495 0.09090909090909091 198 18 "c-di-GMP-binding biofilm dispersal mediator protein" +BW25113_4249__3prime bdcA__3prime 0 4462959 4463156 -1 226 0.045454545454545456 198 9 "c-di-GMP-binding biofilm dispersal mediator protein" +BW25113_4251 bdcR 0 4463941 4464534 1 3906 0.22895622895622897 594 136 "transcriptional repressor for divergent bdcA" +BW25113_4251__5prime bdcR__5prime 0 4463743 4463940 1 341 0.09090909090909091 198 18 "transcriptional repressor for divergent bdcA" +BW25113_4251__3prime bdcR__3prime 0 4464535 4464732 1 548 0.12121212121212122 198 24 "transcriptional repressor for divergent bdcA" +4464650_4464651 4464650_4464651 0 4464651 4464651 1 0 0.0 1 0 "4464650_4464651" +4464650_4464651__5prime 4464650_4464651__5prime 0 4464453 4464650 1 1476 0.18686868686868688 198 37 "4464650_4464651" +4464650_4464651__3prime 4464650_4464651__3prime 0 4464652 4464849 1 1823 0.3484848484848485 198 69 "4464650_4464651" +BW25113_4252 tabA 0 4464679 4465131 1 4617 0.38852097130242824 453 176 "biofilm modulator regulated by toxins; DUF386 family protein and cupin superfamily" +BW25113_4252__5prime tabA__5prime 0 4464481 4464678 1 515 0.12626262626262627 198 25 "biofilm modulator regulated by toxins; DUF386 family protein and cupin superfamily" +BW25113_4252__3prime tabA__3prime 0 4465132 4465329 1 510 0.12121212121212122 198 24 "biofilm modulator regulated by toxins; DUF386 family protein and cupin superfamily" +BW25113_4253 yjgL 0 4465254 4467068 1 6549 0.12672176308539945 1815 230 "uncharacterized protein" +BW25113_4253__5prime yjgL__5prime 0 4465056 4465253 1 2260 0.35353535353535354 198 70 "uncharacterized protein" +BW25113_4253__3prime yjgL__3prime 0 4467069 4467266 1 1869 0.21717171717171718 198 43 "uncharacterized protein" +BW25113_4254 argI 0 4467124 4468128 -1 4533 0.16318407960199005 1005 164 "ornithine carbamoyltransferase 1" +BW25113_4254__5prime argI__5prime 0 4468129 4468326 -1 529 0.09090909090909091 198 18 "ornithine carbamoyltransferase 1" +BW25113_4254__3prime argI__3prime 0 4466926 4467123 -1 930 0.13131313131313133 198 26 "ornithine carbamoyltransferase 1" +BW25113_4255 rraB 0 4468290 4468706 1 973 0.09352517985611511 417 39 "protein inhibitor of RNase E" +BW25113_4255__5prime rraB__5prime 0 4468092 4468289 1 516 0.08080808080808081 198 16 "protein inhibitor of RNase E" +BW25113_4255__3prime rraB__3prime 0 4468707 4468904 1 702 0.1717171717171717 198 34 "protein inhibitor of RNase E" +4468755_4468789 4468755_4468789 0 4468756 4468789 1 86 0.14705882352941177 34 5 "4468755_4468789" +4468755_4468789__5prime 4468755_4468789__5prime 0 4468558 4468755 1 758 0.1414141414141414 198 28 "4468755_4468789" +4468755_4468789__3prime 4468755_4468789__3prime 0 4468790 4468987 1 323 0.13636363636363635 198 27 "4468755_4468789" +BW25113_4256 yjgM 0 4468851 4469354 -1 6051 0.3392857142857143 504 171 "putative acetyltransferase" +BW25113_4256__5prime yjgM__5prime 0 4469355 4469552 -1 949 0.16666666666666666 198 33 "putative acetyltransferase" +BW25113_4256__3prime yjgM__3prime 0 4468653 4468850 -1 705 0.13131313131313133 198 26 "putative acetyltransferase" +BW25113_4257 yjgN 0 4469547 4470743 1 6844 0.22639933166248954 1197 271 "DUF898 family inner membrane protein" +BW25113_4257__5prime yjgN__5prime 0 4469349 4469546 1 949 0.16666666666666666 198 33 "DUF898 family inner membrane protein" +BW25113_4257__3prime yjgN__3prime 0 4470744 4470941 1 59 0.025252525252525252 198 5 "DUF898 family inner membrane protein" +4470755_4470773 4470755_4470773 0 4470756 4470773 1 12 0.1111111111111111 18 2 "4470755_4470773" +4470755_4470773__5prime 4470755_4470773__5prime 0 4470558 4470755 1 2028 0.25252525252525254 198 50 "4470755_4470773" +4470755_4470773__3prime 4470755_4470773__3prime 0 4470774 4470971 1 47 0.015151515151515152 198 3 "4470755_4470773" +BW25113_4258 valS 0 4470799 4473654 -1 61 0.0010504201680672268 2856 3 "valyl-tRNA synthetase" +BW25113_4258__5prime valS__5prime 0 4473655 4473852 -1 0 0.0 198 0 "valyl-tRNA synthetase" +BW25113_4258__3prime valS__3prime 0 4470601 4470798 -1 646 0.1414141414141414 198 28 "valyl-tRNA synthetase" +BW25113_4259 holC 0 4473654 4474097 -1 145 0.02027027027027027 444 9 "DNA polymerase III and chi subunit" +BW25113_4259__5prime holC__5prime 0 4474098 4474295 -1 1269 0.25252525252525254 198 50 "DNA polymerase III and chi subunit" +BW25113_4259__3prime holC__3prime 0 4473456 4473653 -1 0 0.0 198 0 "DNA polymerase III and chi subunit" +4474149_4474233 4474149_4474233 0 4474150 4474233 1 922 0.42857142857142855 84 36 "4474149_4474233" +4474149_4474233__5prime 4474149_4474233__5prime 0 4473952 4474149 1 285 0.06060606060606061 198 12 "4474149_4474233" +4474149_4474233__3prime 4474149_4474233__3prime 0 4474234 4474431 1 462 0.13636363636363635 198 27 "4474149_4474233" +BW25113_4260 pepA 0 4474257 4475768 -1 4661 0.14417989417989419 1512 218 "multifunctional aminopeptidase A: a cyteinylglycinase and transcription regulator and site-specific recombination factor" +BW25113_4260__5prime pepA__5prime 0 4475769 4475966 -1 242 0.08585858585858586 198 17 "multifunctional aminopeptidase A: a cyteinylglycinase and transcription regulator and site-specific recombination factor" +BW25113_4260__3prime pepA__3prime 0 4474059 4474256 -1 1155 0.2222222222222222 198 44 "multifunctional aminopeptidase A: a cyteinylglycinase and transcription regulator and site-specific recombination factor" +BW25113_4261 lptF 0 4476035 4477135 1 0 0.0 1101 0 "lipopolysaccharide export ABC permease of the LptBFGC export complex" +BW25113_4261__5prime lptF__5prime 0 4475837 4476034 1 19 0.010101010101010102 198 2 "lipopolysaccharide export ABC permease of the LptBFGC export complex" +BW25113_4261__3prime lptF__3prime 0 4477136 4477333 1 0 0.0 198 0 "lipopolysaccharide export ABC permease of the LptBFGC export complex" +BW25113_4262 lptG 0 4477135 4478217 1 52 0.00554016620498615 1083 6 "lipopolysaccharide export ABC permease of the LptBFGC export complex" +BW25113_4262__5prime lptG__5prime 0 4476937 4477134 1 0 0.0 198 0 "lipopolysaccharide export ABC permease of the LptBFGC export complex" +BW25113_4262__3prime lptG__3prime 0 4478218 4478415 1 394 0.11616161616161616 198 23 "lipopolysaccharide export ABC permease of the LptBFGC export complex" +4478321_4478357 4478321_4478357 0 4478322 4478357 1 159 0.16666666666666666 36 6 "4478321_4478357" +4478321_4478357__5prime 4478321_4478357__5prime 0 4478124 4478321 1 134 0.05555555555555555 198 11 "4478321_4478357" +4478321_4478357__3prime 4478321_4478357__3prime 0 4478358 4478555 1 832 0.1111111111111111 198 22 "4478321_4478357" +BW25113_4263 yjgR 0 4478378 4479880 -1 4381 0.11842980705256155 1503 178 "DUF853 family protein with NTPase fold" +BW25113_4263__5prime yjgR__5prime 0 4479881 4480078 -1 695 0.08080808080808081 198 16 "DUF853 family protein with NTPase fold" +BW25113_4263__3prime yjgR__3prime 0 4478180 4478377 -1 376 0.1111111111111111 198 22 "DUF853 family protein with NTPase fold" +BW25113_4264 idnR 0 4479958 4480956 -1 8441 0.26126126126126126 999 261 "transcriptional repressor and 5-gluconate-binding" +BW25113_4264__5prime idnR__5prime 0 4480957 4481154 -1 940 0.21212121212121213 198 42 "transcriptional repressor and 5-gluconate-binding" +BW25113_4264__3prime idnR__3prime 0 4479760 4479957 -1 205 0.06565656565656566 198 13 "transcriptional repressor and 5-gluconate-binding" +BW25113_4265 idnT 0 4481023 4482342 -1 8749 0.23484848484848486 1320 310 "L-idonate and D-gluconate transporter" +BW25113_4265__5prime idnT__5prime 0 4482343 4482540 -1 772 0.15656565656565657 198 31 "L-idonate and D-gluconate transporter" +BW25113_4265__3prime idnT__3prime 0 4480825 4481022 -1 1783 0.26262626262626265 198 52 "L-idonate and D-gluconate transporter" +BW25113_4266 idnO 0 4482404 4483168 -1 6258 0.28627450980392155 765 219 "5-keto-D-gluconate-5-reductase" +BW25113_4266__5prime idnO__5prime 0 4483169 4483366 -1 1897 0.24242424242424243 198 48 "5-keto-D-gluconate-5-reductase" +BW25113_4266__3prime idnO__3prime 0 4482206 4482403 -1 837 0.13636363636363635 198 27 "5-keto-D-gluconate-5-reductase" +BW25113_4267 idnD 0 4483192 4484223 -1 15805 0.34108527131782945 1032 352 "L-idonate 5-dehydrogenase and NAD-binding" +BW25113_4267__5prime idnD__5prime 0 4484224 4484421 -1 1970 0.2676767676767677 198 53 "L-idonate 5-dehydrogenase and NAD-binding" +BW25113_4267__3prime idnD__3prime 0 4482994 4483191 -1 1689 0.25757575757575757 198 51 "L-idonate 5-dehydrogenase and NAD-binding" +BW25113_4268 idnK 0 4484440 4485003 1 5751 0.3049645390070922 564 172 "D-gluconate kinase and thermosensitive" +BW25113_4268__5prime idnK__5prime 0 4484242 4484439 1 1950 0.2474747474747475 198 49 "D-gluconate kinase and thermosensitive" +BW25113_4268__3prime idnK__3prime 0 4485004 4485201 1 325 0.045454545454545456 198 9 "D-gluconate kinase and thermosensitive" +BW25113_4269 ahr 0 4485007 4486026 -1 2610 0.10588235294117647 1020 108 "aldehyde reductase and NADPH-dependent and Zn-containing and broad specificity" +BW25113_4269__5prime ahr__5prime 0 4486027 4486224 -1 1148 0.11616161616161616 198 23 "aldehyde reductase and NADPH-dependent and Zn-containing and broad specificity" +BW25113_4269__3prime ahr__3prime 0 4484809 4485006 -1 3187 0.398989898989899 198 79 "aldehyde reductase and NADPH-dependent and Zn-containing and broad specificity" +BW25113_4270 leuX 0 4486222 4486306 1 87 0.023529411764705882 85 2 "tRNA-Leu" +BW25113_4270__5prime leuX__5prime 0 4486024 4486221 1 1138 0.1111111111111111 198 22 "tRNA-Leu" +BW25113_4270__3prime leuX__3prime 0 4486307 4486504 1 1008 0.18686868686868688 198 37 "tRNA-Leu" +BW25113_4271 intB 0 4486492 4487757 1 12115 0.3380726698262243 1266 428 "4486491_4487757" +BW25113_4271__5prime intB__5prime 0 4486294 4486491 1 939 0.18181818181818182 198 36 "4486491_4487757" +BW25113_4271__3prime intB__3prime 0 4487758 4487955 1 943 0.23737373737373738 198 47 "4486491_4487757" +BW25113_4272 insC1 0 4488089 4488454 1 1725 0.28688524590163933 366 105 "IS2 repressor TnpA" +BW25113_4272__5prime insC1__5prime 0 4487891 4488088 1 3540 0.3787878787878788 198 75 "IS2 repressor TnpA" +BW25113_4272__3prime insC1__3prime 0 4488455 4488652 1 418 0.21212121212121213 198 42 "IS2 repressor TnpA" +BW25113_4273 insD1 0 4488412 4489317 1 3415 0.25386313465783666 906 230 "IS2 transposase TnpB" +BW25113_4273__5prime insD1__5prime 0 4488214 4488411 1 336 0.16666666666666666 198 33 "IS2 transposase TnpB" +BW25113_4273__3prime insD1__3prime 0 4489318 4489515 1 2183 0.37373737373737376 198 74 "IS2 transposase TnpB" +BW25113_4575 yjgX 0 4489410 4490608 -1 7001 0.21267723102585487 1199 255 "4489409_4490608" +BW25113_4575__5prime yjgX__5prime 0 4490609 4490806 -1 988 0.18686868686868688 198 37 "4489409_4490608" +BW25113_4575__3prime yjgX__3prime 0 4489212 4489409 -1 2565 0.45454545454545453 198 90 "4489409_4490608" +BW25113_4277 yjgZ 0 4491077 4491406 1 826 0.15757575757575756 330 52 "uncharacterized protein" +BW25113_4277__5prime yjgZ__5prime 0 4490879 4491076 1 623 0.1414141414141414 198 28 "uncharacterized protein" +BW25113_4277__3prime yjgZ__3prime 0 4491407 4491604 1 800 0.21717171717171718 198 43 "uncharacterized protein" +4491906_4493332 4491906_4493332 0 4491907 4493332 -1 4883 0.14305750350631136 1426 204 "4491906_4493332" +4491906_4493332__5prime 4491906_4493332__5prime 0 4493333 4493530 -1 324 0.08080808080808081 198 16 "4491906_4493332" +4491906_4493332__3prime 4491906_4493332__3prime 0 4491709 4491906 -1 236 0.07575757575757576 198 15 "4491906_4493332" +BW25113_4278 insG 0 4491920 4493248 -1 4543 0.1474793077501881 1329 196 "IS4 transposase" +BW25113_4278__5prime insG__5prime 0 4493249 4493446 -1 356 0.04040404040404041 198 8 "IS4 transposase" +BW25113_4278__3prime insG__3prime 0 4491722 4491919 -1 225 0.07575757575757576 198 15 "IS4 transposase" +BW25113_4279 yjhB 0 4493875 4495092 1 6755 0.17980295566502463 1218 219 "putative transporter" +BW25113_4279__5prime yjhB__5prime 0 4493677 4493874 1 750 0.20707070707070707 198 41 "putative transporter" +BW25113_4279__3prime yjhB__3prime 0 4495093 4495290 1 1026 0.23232323232323232 198 46 "putative transporter" +BW25113_4280 yjhC 0 4495104 4496222 1 10637 0.2779267202859696 1119 311 "putative oxidoreductase" +BW25113_4280__5prime yjhC__5prime 0 4494906 4495103 1 599 0.13131313131313133 198 26 "putative oxidoreductase" +BW25113_4280__3prime yjhC__3prime 0 4496223 4496420 1 1137 0.20202020202020202 198 40 "putative oxidoreductase" +BW25113_4655 ythA 0 4496265 4496390 1 361 0.15079365079365079 126 19 "uncharacterized protein" +BW25113_4655__5prime ythA__5prime 0 4496067 4496264 1 1983 0.3333333333333333 198 66 "uncharacterized protein" +BW25113_4655__3prime ythA__3prime 0 4496391 4496588 1 5368 0.5303030303030303 198 105 "uncharacterized protein" +BW25113_4281 yjhD 0 4496443 4496673 -1 6337 0.4935064935064935 231 114 "4496442_4496673" +BW25113_4281__5prime yjhD__5prime 0 4496674 4496871 -1 5280 0.4696969696969697 198 93 "4496442_4496673" +BW25113_4281__3prime yjhD__3prime 0 4496245 4496442 -1 1893 0.26262626262626265 198 52 "4496442_4496673" +BW25113_4282 yjhE 0 4496678 4496926 1 5161 0.42570281124497994 249 106 "4496677_4496926" +BW25113_4282__5prime yjhE__5prime 0 4496480 4496677 1 6316 0.51010101010101 198 101 "4496677_4496926" +BW25113_4282__3prime yjhE__3prime 0 4496927 4497124 1 4967 0.4797979797979798 198 95 "4496677_4496926" +BW25113_4623 insO 0 4497014 4499610 1 10315 0.20177127454755486 2597 524 "4497013_4499610" +BW25113_4623__5prime insO__5prime 0 4496816 4497013 1 5813 0.4898989898989899 198 97 "4497013_4499610" +BW25113_4623__3prime insO__3prime 0 4499611 4499808 1 867 0.20202020202020202 198 40 "4497013_4499610" +4497275_4498496 4497275_4498496 0 4497276 4498496 -1 4657 0.23095823095823095 1221 282 "4497275_4498496" +4497275_4498496__5prime 4497275_4498496__5prime 0 4498497 4498694 -1 267 0.08585858585858586 198 17 "4497275_4498496" +4497275_4498496__3prime 4497275_4498496__3prime 0 4497078 4497275 -1 1668 0.29797979797979796 198 59 "4497275_4498496" +BW25113_4284 insI1 0 4497283 4498434 -1 4599 0.24305555555555555 1152 280 "IS30 transposase" +BW25113_4284__5prime insI1__5prime 0 4498435 4498632 -1 154 0.045454545454545456 198 9 "IS30 transposase" +BW25113_4284__3prime insI1__3prime 0 4497085 4497282 -1 1572 0.2727272727272727 198 54 "IS30 transposase" +4498180_4499511 4498180_4499511 0 4498181 4499511 1 4621 0.17655897821187078 1331 235 "4498180_4499511" +4498180_4499511__5prime 4498180_4499511__5prime 0 4497983 4498180 1 563 0.20202020202020202 198 40 "4498180_4499511" +4498180_4499511__3prime 4498180_4499511__3prime 0 4499512 4499709 1 948 0.15656565656565657 198 31 "4498180_4499511" +BW25113_4561 insM 0 4498493 4498759 -1 395 0.08614232209737828 267 23 "4498492_4498759" +BW25113_4561__5prime insM__5prime 0 4498760 4498957 -1 884 0.19696969696969696 198 39 "4498492_4498759" +BW25113_4561__3prime insM__3prime 0 4498295 4498492 -1 518 0.16161616161616163 198 32 "4498492_4498759" +4498496_4498823 4498496_4498823 0 4498497 4498823 -1 649 0.1162079510703364 327 38 "4498496_4498823" +4498496_4498823__5prime 4498496_4498823__5prime 0 4498824 4499021 -1 693 0.15151515151515152 198 30 "4498496_4498823" +4498496_4498823__3prime 4498496_4498823__3prime 0 4498299 4498496 -1 481 0.14646464646464646 198 29 "4498496_4498823" +BW25113_4286 yjhV 0 4499621 4499950 1 1026 0.14242424242424243 330 47 "4499620_4499950" +BW25113_4286__5prime yjhV__5prime 0 4499423 4499620 1 1118 0.16666666666666666 198 33 "4499620_4499950" +BW25113_4286__3prime yjhV__3prime 0 4499951 4500148 1 489 0.08585858585858586 198 17 "4499620_4499950" +BW25113_4287 fecE 0 4500507 4501274 -1 2669 0.15364583333333334 768 118 "iron-dicitrate transporter subunit" +BW25113_4287__5prime fecE__5prime 0 4501275 4501472 -1 294 0.0707070707070707 198 14 "iron-dicitrate transporter subunit" +BW25113_4287__3prime fecE__3prime 0 4500309 4500506 -1 992 0.23737373737373738 198 47 "iron-dicitrate transporter subunit" +BW25113_4288 fecD 0 4501275 4502231 -1 2680 0.13688610240334378 957 131 "iron-dicitrate transporter subunit" +BW25113_4288__5prime fecD__5prime 0 4502232 4502429 -1 929 0.1717171717171717 198 34 "iron-dicitrate transporter subunit" +BW25113_4288__3prime fecD__3prime 0 4501077 4501274 -1 335 0.05555555555555555 198 11 "iron-dicitrate transporter subunit" +BW25113_4289 fecC 0 4502228 4503226 -1 4627 0.18018018018018017 999 180 "iron-dicitrate transporter subunit" +BW25113_4289__5prime fecC__5prime 0 4503227 4503424 -1 476 0.14646464646464646 198 29 "iron-dicitrate transporter subunit" +BW25113_4289__3prime fecC__3prime 0 4502030 4502227 -1 738 0.20202020202020202 198 40 "iron-dicitrate transporter subunit" +BW25113_4290 fecB 0 4503223 4504125 -1 2262 0.11517165005537099 903 104 "iron-dicitrate transporter subunit" +BW25113_4290__5prime fecB__5prime 0 4504126 4504323 -1 529 0.18181818181818182 198 36 "iron-dicitrate transporter subunit" +BW25113_4290__3prime fecB__3prime 0 4503025 4503222 -1 204 0.05555555555555555 198 11 "iron-dicitrate transporter subunit" +BW25113_4291 fecA 0 4504170 4506494 -1 10250 0.16774193548387098 2325 390 "ferric citrate outer membrane transporter" +BW25113_4291__5prime fecA__5prime 0 4506495 4506692 -1 438 0.08585858585858586 198 17 "ferric citrate outer membrane transporter" +BW25113_4291__3prime fecA__3prime 0 4503972 4504169 -1 305 0.10101010101010101 198 20 "ferric citrate outer membrane transporter" +BW25113_4292 fecR 0 4506581 4507534 -1 2931 0.1289308176100629 954 123 "FecI pro-sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator" +BW25113_4292__5prime fecR__5prime 0 4507535 4507732 -1 1048 0.16666666666666666 198 33 "FecI pro-sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator" +BW25113_4292__3prime fecR__3prime 0 4506383 4506580 -1 1101 0.14646464646464646 198 29 "FecI pro-sigma factor; transmembrane signal transducer for ferric citrate transport; periplasmic FecA:ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator" +4507124_4507458 4507124_4507458 0 4507125 4507458 1 795 0.11377245508982035 334 38 "4507124_4507458" +4507124_4507458__5prime 4507124_4507458__5prime 0 4506927 4507124 1 800 0.16666666666666666 198 33 "4507124_4507458" +4507124_4507458__3prime 4507124_4507458__3prime 0 4507459 4507656 1 1139 0.16666666666666666 198 33 "4507124_4507458" +BW25113_4293 fecI 0 4507531 4508052 -1 1797 0.12643678160919541 522 66 "RNA polymerase and sigma 19 factor" +BW25113_4293__5prime fecI__5prime 0 4508053 4508250 -1 140 0.04040404040404041 198 8 "RNA polymerase and sigma 19 factor" +BW25113_4293__3prime fecI__3prime 0 4507333 4507530 -1 718 0.1414141414141414 198 28 "RNA polymerase and sigma 19 factor" +BW25113_4294 insA 0 4508344 4508619 1 1270 0.2318840579710145 276 64 "IS1 repressor TnpA" +BW25113_4294__5prime insA__5prime 0 4508146 4508343 1 394 0.10101010101010101 198 20 "IS1 repressor TnpA" +BW25113_4294__3prime insA__3prime 0 4508620 4508817 1 513 0.09595959595959595 198 19 "IS1 repressor TnpA" +BW25113_4576 insB1 0 4508538 4509041 1 1732 0.12896825396825398 504 65 "4508537_4509041" +BW25113_4576__5prime insB1__5prime 0 4508340 4508537 1 1114 0.2727272727272727 198 54 "4508537_4509041" +BW25113_4576__3prime insB1__3prime 0 4509042 4509239 1 336 0.10101010101010101 198 20 "4508537_4509041" +4509006_4509801 4509006_4509801 0 4509007 4509801 1 2009 0.13584905660377358 795 108 "4509006_4509801" +4509006_4509801__5prime 4509006_4509801__5prime 0 4508809 4509006 1 985 0.16666666666666666 198 33 "4509006_4509801" +4509006_4509801__3prime 4509006_4509801__3prime 0 4509802 4509999 1 355 0.09090909090909091 198 18 "4509006_4509801" +BW25113_4295 yjhU 0 4509155 4510141 -1 2687 0.13069908814589665 987 129 "putative DNA-binding transcriptional regulator; KpLE2 phage-like element" +BW25113_4295__5prime yjhU__5prime 0 4510142 4510339 -1 595 0.17676767676767677 198 35 "putative DNA-binding transcriptional regulator; KpLE2 phage-like element" +BW25113_4295__3prime yjhU__3prime 0 4508957 4509154 -1 301 0.10606060606060606 198 21 "putative DNA-binding transcriptional regulator; KpLE2 phage-like element" +BW25113_4296 yjhF 0 4510488 4511837 -1 18090 0.3251851851851852 1350 439 "putative transporter" +BW25113_4296__5prime yjhF__5prime 0 4511838 4512035 -1 4666 0.4444444444444444 198 88 "putative transporter" +BW25113_4296__3prime yjhF__3prime 0 4510290 4510487 -1 1174 0.22727272727272727 198 45 "putative transporter" +BW25113_4297 yjhG 0 4511944 4513911 -1 14446 0.22306910569105692 1968 439 "putative dehydratase" +BW25113_4297__5prime yjhG__5prime 0 4513912 4514109 -1 563 0.11616161616161616 198 23 "putative dehydratase" +BW25113_4297__3prime yjhG__3prime 0 4511746 4511943 -1 3922 0.398989898989899 198 79 "putative dehydratase" +BW25113_4298 yjhH 0 4513922 4514827 -1 6584 0.2130242825607064 906 193 "putative lyase/synthase" +BW25113_4298__5prime yjhH__5prime 0 4514828 4515025 -1 1855 0.40404040404040403 198 80 "putative lyase/synthase" +BW25113_4298__3prime yjhH__3prime 0 4513724 4513921 -1 768 0.22727272727272727 198 45 "putative lyase/synthase" +BW25113_4299 yjhI 0 4514832 4515620 -1 10654 0.33713561470215464 789 266 "putative DNA-binding transcriptional regulator" +BW25113_4299__5prime yjhI__5prime 0 4515621 4515818 -1 6077 0.48484848484848486 198 96 "putative DNA-binding transcriptional regulator" +BW25113_4299__3prime yjhI__3prime 0 4514634 4514831 -1 3905 0.42424242424242425 198 84 "putative DNA-binding transcriptional regulator" +BW25113_4300 sgcR 0 4515923 4516705 -1 7493 0.2796934865900383 783 219 "putative DNA-binding transcriptional regulator" +BW25113_4300__5prime sgcR__5prime 0 4516706 4516903 -1 504 0.10606060606060606 198 21 "putative DNA-binding transcriptional regulator" +BW25113_4300__3prime sgcR__3prime 0 4515725 4515922 -1 5312 0.3333333333333333 198 66 "putative DNA-binding transcriptional regulator" +BW25113_4301 sgcE 0 4516722 4517354 -1 2571 0.1674565560821485 633 106 "putative epimerase" +BW25113_4301__5prime sgcE__5prime 0 4517355 4517552 -1 554 0.13131313131313133 198 26 "putative epimerase" +BW25113_4301__3prime sgcE__3prime 0 4516524 4516721 -1 1165 0.1919191919191919 198 38 "putative epimerase" +BW25113_4302 sgcA 0 4517366 4517797 -1 1444 0.14583333333333334 432 63 "putative phosphotransferase enzyme IIA component" +BW25113_4302__5prime sgcA__5prime 0 4517798 4517995 -1 547 0.09090909090909091 198 18 "putative phosphotransferase enzyme IIA component" +BW25113_4302__3prime sgcA__3prime 0 4517168 4517365 -1 1092 0.18181818181818182 198 36 "putative phosphotransferase enzyme IIA component" +BW25113_4624 ryjB 0 4517794 4517883 1 102 0.044444444444444446 90 4 "novel sRNA and function unknown" +BW25113_4624__5prime ryjB__5prime 0 4517596 4517793 1 892 0.1919191919191919 198 38 "novel sRNA and function unknown" +BW25113_4624__3prime ryjB__3prime 0 4517884 4518081 1 569 0.10606060606060606 198 21 "novel sRNA and function unknown" +BW25113_4303 sgcQ 0 4517928 4518734 -1 1644 0.07434944237918216 807 60 "putative nucleoside triphosphatase" +BW25113_4303__5prime sgcQ__5prime 0 4518735 4518932 -1 435 0.09090909090909091 198 18 "putative nucleoside triphosphatase" +BW25113_4303__3prime sgcQ__3prime 0 4517730 4517927 -1 646 0.1111111111111111 198 22 "putative nucleoside triphosphatase" +4518471_4519239 4518471_4519239 0 4518472 4519239 1 2883 0.15364583333333334 768 118 "4518471_4519239" +4518471_4519239__5prime 4518471_4519239__5prime 0 4518274 4518471 1 329 0.06060606060606061 198 12 "4518471_4519239" +4518471_4519239__3prime 4518471_4519239__3prime 0 4519240 4519437 1 524 0.15656565656565657 198 31 "4518471_4519239" +BW25113_4304 sgcC 0 4518747 4520060 -1 4889 0.15601217656012176 1314 205 "putative PTS system EIIC permease component" +BW25113_4304__5prime sgcC__5prime 0 4520061 4520258 -1 566 0.14646464646464646 198 29 "putative PTS system EIIC permease component" +BW25113_4304__3prime sgcC__3prime 0 4518549 4518746 -1 436 0.09595959595959595 198 19 "putative PTS system EIIC permease component" +BW25113_4565 sgcB 0 4520072 4520350 -1 761 0.13978494623655913 279 39 "putative enzyme IIB component of PTS" +BW25113_4565__5prime sgcB__5prime 0 4520351 4520548 -1 1128 0.23232323232323232 198 46 "putative enzyme IIB component of PTS" +BW25113_4565__3prime sgcB__3prime 0 4519874 4520071 -1 827 0.13636363636363635 198 27 "putative enzyme IIB component of PTS" +BW25113_4305 sgcX 0 4520347 4521468 -1 6235 0.19518716577540107 1122 219 "putative endoglucanase with Zn-dependent exopeptidase domain" +BW25113_4305__5prime sgcX__5prime 0 4521469 4521666 -1 297 0.09595959595959595 198 19 "putative endoglucanase with Zn-dependent exopeptidase domain" +BW25113_4305__3prime sgcX__3prime 0 4520149 4520346 -1 634 0.15151515151515152 198 30 "putative endoglucanase with Zn-dependent exopeptidase domain" +BW25113_4656 yjhY 0 4521867 4522127 -1 1103 0.1532567049808429 261 40 "4521866_4522127" +BW25113_4656__5prime yjhY__5prime 0 4522128 4522325 -1 359 0.06565656565656566 198 13 "4521866_4522127" +BW25113_4656__3prime yjhY__3prime 0 4521669 4521866 -1 764 0.15151515151515152 198 30 "4521866_4522127" +BW25113_4306 yjhP 0 4522254 4523000 -1 1755 0.09370816599732262 747 70 "putative methyltransferase" +BW25113_4306__5prime yjhP__5prime 0 4523001 4523198 -1 977 0.2222222222222222 198 44 "putative methyltransferase" +BW25113_4306__3prime yjhP__3prime 0 4522056 4522253 -1 780 0.1414141414141414 198 28 "putative methyltransferase" +BW25113_4307 yjhQ 0 4523056 4523601 -1 2340 0.18681318681318682 546 102 "putative acetyltransferase" +BW25113_4307__5prime yjhQ__5prime 0 4523602 4523799 -1 1552 0.3282828282828283 198 65 "putative acetyltransferase" +BW25113_4307__3prime yjhQ__3prime 0 4522858 4523055 -1 617 0.1111111111111111 198 22 "putative acetyltransferase" +BW25113_4566 yjhX 0 4523613 4523870 -1 2279 0.3488372093023256 258 90 "UPF0386 family protein" +BW25113_4566__5prime yjhX__5prime 0 4523871 4524068 -1 2017 0.3686868686868687 198 73 "UPF0386 family protein" +BW25113_4566__3prime yjhX__3prime 0 4523415 4523612 -1 856 0.14646464646464646 198 29 "UPF0386 family protein" +BW25113_4657 yjhZ 0 4524247 4524492 -1 5987 0.4105691056910569 246 101 "4524246_4524492" +BW25113_4657__5prime yjhZ__5prime 0 4524493 4524690 -1 8552 0.5909090909090909 198 117 "4524246_4524492" +BW25113_4657__3prime yjhZ__3prime 0 4524049 4524246 -1 1796 0.30808080808080807 198 61 "4524246_4524492" +BW25113_4308 yjhR 0 4524608 4525848 1 34346 0.44963738920225627 1241 558 "4524607_4525848" +BW25113_4308__5prime yjhR__5prime 0 4524410 4524607 1 6622 0.5555555555555556 198 110 "4524607_4525848" +BW25113_4308__3prime yjhR__3prime 0 4525849 4526046 1 1543 0.19696969696969696 198 39 "4524607_4525848" +4526221_4526247 4526221_4526247 0 4526222 4526247 1 123 0.2692307692307692 26 7 "4526221_4526247" +4526221_4526247__5prime 4526221_4526247__5prime 0 4526024 4526221 1 3078 0.26262626262626265 198 52 "4526221_4526247" +4526221_4526247__3prime 4526221_4526247__3prime 0 4526248 4526445 1 1400 0.30303030303030304 198 60 "4526221_4526247" +BW25113_4309 nanS 0 4526431 4527411 -1 21800 0.4230377166156983 981 415 "9-O-acetyl N-acetylneuraminic acid esterase" +BW25113_4309__5prime nanS__5prime 0 4527412 4527609 -1 3588 0.45454545454545453 198 90 "9-O-acetyl N-acetylneuraminic acid esterase" +BW25113_4309__3prime nanS__3prime 0 4526233 4526430 -1 1237 0.26262626262626265 198 52 "9-O-acetyl N-acetylneuraminic acid esterase" +BW25113_4310 nanM 0 4527476 4528582 -1 26875 0.45799457994579945 1107 507 "N-acetylneuraminic acid mutarotase" +BW25113_4310__5prime nanM__5prime 0 4528583 4528780 -1 4499 0.48484848484848486 198 96 "N-acetylneuraminic acid mutarotase" +BW25113_4310__3prime nanM__3prime 0 4527278 4527475 -1 10587 0.5151515151515151 198 102 "N-acetylneuraminic acid mutarotase" +BW25113_4311 nanC 0 4528602 4529318 -1 17316 0.4769874476987448 717 342 "N-acetylnuraminic acid outer membrane channel protein" +BW25113_4311__5prime nanC__5prime 0 4529319 4529516 -1 477 0.10606060606060606 198 21 "N-acetylnuraminic acid outer membrane channel protein" +BW25113_4311__3prime nanC__3prime 0 4528404 4528601 -1 11074 0.6616161616161617 198 131 "N-acetylnuraminic acid outer membrane channel protein" +BW25113_4312 fimB 0 4530774 4531376 1 13005 0.41127694859038144 603 248 "tyrosine recombinase/inversion of on/off regulator of fimA" +BW25113_4312__5prime fimB__5prime 0 4530576 4530773 1 1339 0.23737373737373738 198 47 "tyrosine recombinase/inversion of on/off regulator of fimA" +BW25113_4312__3prime fimB__3prime 0 4531377 4531574 1 280 0.08080808080808081 198 16 "tyrosine recombinase/inversion of on/off regulator of fimA" +BW25113_4313 fimE 0 4531854 4532450 1 9194 0.3852596314907873 597 230 "tyrosine recombinase/inversion of on/off regulator of fimA" +BW25113_4313__5prime fimE__5prime 0 4531656 4531853 1 1221 0.20707070707070707 198 41 "tyrosine recombinase/inversion of on/off regulator of fimA" +BW25113_4313__3prime fimE__3prime 0 4532451 4532648 1 154 0.05555555555555555 198 11 "tyrosine recombinase/inversion of on/off regulator of fimA" +BW25113_4314 fimA 0 4532932 4533480 1 3445 0.26229508196721313 549 144 "major type 1 subunit fimbrin (pilin)" +BW25113_4314__5prime fimA__5prime 0 4532734 4532931 1 311 0.10606060606060606 198 21 "major type 1 subunit fimbrin (pilin)" +BW25113_4314__3prime fimA__3prime 0 4533481 4533678 1 846 0.22727272727272727 198 45 "major type 1 subunit fimbrin (pilin)" +BW25113_4315 fimI 0 4533545 4534084 1 7019 0.3333333333333333 540 180 "fimbrial protein involved in type 1 pilus biosynthesis" +BW25113_4315__5prime fimI__5prime 0 4533347 4533544 1 1564 0.35353535353535354 198 70 "fimbrial protein involved in type 1 pilus biosynthesis" +BW25113_4315__3prime fimI__3prime 0 4534085 4534282 1 6887 0.5252525252525253 198 104 "fimbrial protein involved in type 1 pilus biosynthesis" +BW25113_4316 fimC 0 4534121 4534846 1 12452 0.3581267217630854 726 260 "periplasmic chaperone" +BW25113_4316__5prime fimC__5prime 0 4533923 4534120 1 3641 0.47474747474747475 198 94 "periplasmic chaperone" +BW25113_4316__3prime fimC__3prime 0 4534847 4535044 1 2000 0.31313131313131315 198 62 "periplasmic chaperone" +BW25113_4317 fimD 0 4534913 4537549 1 60622 0.4194160030337505 2637 1106 "fimbrial usher outer membrane porin protein; FimCD chaperone-usher" +BW25113_4317__5prime fimD__5prime 0 4534715 4534912 1 1227 0.2676767676767677 198 53 "fimbrial usher outer membrane porin protein; FimCD chaperone-usher" +BW25113_4317__3prime fimD__3prime 0 4537550 4537747 1 679 0.1111111111111111 198 22 "fimbrial usher outer membrane porin protein; FimCD chaperone-usher" +BW25113_4318 fimF 0 4537559 4538089 1 1169 0.096045197740113 531 51 "minor component of type 1 fimbriae" +BW25113_4318__5prime fimF__5prime 0 4537361 4537558 1 579 0.13636363636363635 198 27 "minor component of type 1 fimbriae" +BW25113_4318__3prime fimF__3prime 0 4538090 4538287 1 590 0.14646464646464646 198 29 "minor component of type 1 fimbriae" +BW25113_4319 fimG 0 4538102 4538605 1 1273 0.15674603174603174 504 79 "minor component of type 1 fimbriae" +BW25113_4319__5prime fimG__5prime 0 4537904 4538101 1 468 0.12121212121212122 198 24 "minor component of type 1 fimbriae" +BW25113_4319__3prime fimG__3prime 0 4538606 4538803 1 354 0.12626262626262627 198 25 "minor component of type 1 fimbriae" +BW25113_4320 fimH 0 4538625 4539527 1 6193 0.2059800664451827 903 186 "minor component of type 1 fimbriae" +BW25113_4320__5prime fimH__5prime 0 4538427 4538624 1 502 0.15656565656565657 198 31 "minor component of type 1 fimbriae" +BW25113_4320__3prime fimH__3prime 0 4539528 4539725 1 894 0.17676767676767677 198 35 "minor component of type 1 fimbriae" +4539599_4539635 4539599_4539635 0 4539600 4539635 1 48 0.1111111111111111 36 4 "4539599_4539635" +4539599_4539635__5prime 4539599_4539635__5prime 0 4539402 4539599 1 1098 0.23737373737373738 198 47 "4539599_4539635" +4539599_4539635__3prime 4539599_4539635__3prime 0 4539636 4539833 1 826 0.13636363636363635 198 27 "4539599_4539635" +BW25113_4321 gntP 0 4539770 4541113 -1 5178 0.16220238095238096 1344 218 "fructuronate transporter" +BW25113_4321__5prime gntP__5prime 0 4541114 4541311 -1 238 0.04040404040404041 198 8 "fructuronate transporter" +BW25113_4321__3prime gntP__3prime 0 4539572 4539769 -1 742 0.12121212121212122 198 24 "fructuronate transporter" +BW25113_4322 uxuA 0 4541453 4542637 1 4631 0.1620253164556962 1185 192 "mannonate hydrolase" +BW25113_4322__5prime uxuA__5prime 0 4541255 4541452 1 281 0.09090909090909091 198 18 "mannonate hydrolase" +BW25113_4322__3prime uxuA__3prime 0 4542638 4542835 1 770 0.16161616161616163 198 32 "mannonate hydrolase" +BW25113_4323 uxuB 0 4542718 4544178 1 3787 0.11156741957563313 1461 163 "D-mannonate oxidoreductase and NAD-dependent" +BW25113_4323__5prime uxuB__5prime 0 4542520 4542717 1 505 0.1111111111111111 198 22 "D-mannonate oxidoreductase and NAD-dependent" +BW25113_4323__3prime uxuB__3prime 0 4544179 4544376 1 172 0.045454545454545456 198 9 "D-mannonate oxidoreductase and NAD-dependent" +4544321_4544355 4544321_4544355 0 4544322 4544355 1 128 0.17647058823529413 34 6 "4544321_4544355" +4544321_4544355__5prime 4544321_4544355__5prime 0 4544124 4544321 1 157 0.06060606060606061 198 12 "4544321_4544355" +4544321_4544355__3prime 4544321_4544355__3prime 0 4544356 4544553 1 374 0.08080808080808081 198 16 "4544321_4544355" +BW25113_4324 uxuR 0 4544393 4545166 1 2968 0.1925064599483204 774 149 "fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor" +BW25113_4324__5prime uxuR__5prime 0 4544195 4544392 1 226 0.050505050505050504 198 10 "fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor" +BW25113_4324__3prime uxuR__3prime 0 4545167 4545364 1 1382 0.2878787878787879 198 57 "fructuronate-inducible hexuronate regulon transcriptional repressor; autorepressor" +BW25113_4325 yjiC 0 4545307 4546137 -1 7365 0.2888086642599278 831 240 "uncharacterized protein" +BW25113_4325__5prime yjiC__5prime 0 4546138 4546335 -1 431 0.1414141414141414 198 28 "uncharacterized protein" +BW25113_4325__3prime yjiC__3prime 0 4545109 4545306 -1 1537 0.3181818181818182 198 63 "uncharacterized protein" +BW25113_4326 iraD 0 4546810 4547202 1 4017 0.2595419847328244 393 102 "RpoS stabilzer after DNA damage and anti-RssB factor" +BW25113_4326__5prime iraD__5prime 0 4546612 4546809 1 5786 0.4494949494949495 198 89 "RpoS stabilzer after DNA damage and anti-RssB factor" +BW25113_4326__3prime iraD__3prime 0 4547203 4547400 1 1131 0.16161616161616163 198 32 "RpoS stabilzer after DNA damage and anti-RssB factor" +BW25113_4327 hypT 0 4547195 4548106 -1 2402 0.10087719298245613 912 92 "hypochlorite-responsive transcription factor" +BW25113_4327__5prime hypT__5prime 0 4548107 4548304 -1 795 0.13131313131313133 198 26 "hypochlorite-responsive transcription factor" +BW25113_4327__3prime hypT__3prime 0 4546997 4547194 -1 2513 0.3333333333333333 198 66 "hypochlorite-responsive transcription factor" +BW25113_4328 iadA 0 4548171 4549343 -1 3616 0.12276214833759591 1173 144 "isoaspartyl dipeptidase" +BW25113_4328__5prime iadA__5prime 0 4549344 4549541 -1 830 0.16161616161616163 198 32 "isoaspartyl dipeptidase" +BW25113_4328__3prime iadA__3prime 0 4547973 4548170 -1 237 0.08585858585858586 198 17 "isoaspartyl dipeptidase" +BW25113_4329 yjiG 0 4549356 4549817 -1 1372 0.11688311688311688 462 54 "SpmB family inner membrane protein" +BW25113_4329__5prime yjiG__5prime 0 4549818 4550015 -1 379 0.10101010101010101 198 20 "SpmB family inner membrane protein" +BW25113_4329__3prime yjiG__3prime 0 4549158 4549355 -1 563 0.13636363636363635 198 27 "SpmB family inner membrane protein" +BW25113_4330 yjiH 0 4549814 4550497 -1 937 0.07309941520467836 684 50 "nucleoside recognition pore and gate family putative inner membrane transporter" +BW25113_4330__5prime yjiH__5prime 0 4550498 4550695 -1 213 0.030303030303030304 198 6 "nucleoside recognition pore and gate family putative inner membrane transporter" +BW25113_4330__3prime yjiH__3prime 0 4549616 4549813 -1 449 0.09595959595959595 198 19 "nucleoside recognition pore and gate family putative inner membrane transporter" +BW25113_4331 kptA 0 4550747 4551301 1 1685 0.14414414414414414 555 80 '"RNA 2''-phosphotransferase"' +BW25113_4331__5prime kptA__5prime 0 4550549 4550746 1 174 0.025252525252525252 198 5 '"RNA 2''-phosphotransferase"' +BW25113_4331__3prime kptA__3prime 0 4551302 4551499 1 1349 0.18181818181818182 198 36 '"RNA 2''-phosphotransferase"' +BW25113_4332 yjiJ 0 4551314 4552492 -1 3559 0.12044105173876166 1179 142 "DUF1228 family putative inner membrane MFS superfamily transporter" +BW25113_4332__5prime yjiJ__5prime 0 4552493 4552690 -1 441 0.13636363636363635 198 27 "DUF1228 family putative inner membrane MFS superfamily transporter" +BW25113_4332__3prime yjiJ__3prime 0 4551116 4551313 -1 362 0.11616161616161616 198 23 "DUF1228 family putative inner membrane MFS superfamily transporter" +BW25113_4333 yjiK 0 4552560 4553420 -1 2871 0.1521486643437863 861 131 "SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase" +BW25113_4333__5prime yjiK__5prime 0 4553421 4553618 -1 2189 0.3787878787878788 198 75 "SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase" +BW25113_4333__3prime yjiK__3prime 0 4552362 4552559 -1 559 0.12626262626262627 198 25 "SdiA-regulated family putative membrane-anchored protein; putative phytase-like esterase" +BW25113_4334 yjiL 0 4553739 4554506 -1 2816 0.14192708333333334 768 109 "putative ATPase and activator of (R)-hydroxyglutaryl-CoA dehydratase" +BW25113_4334__5prime yjiL__5prime 0 4554507 4554704 -1 531 0.13131313131313133 198 26 "putative ATPase and activator of (R)-hydroxyglutaryl-CoA dehydratase" +BW25113_4334__3prime yjiL__3prime 0 4553541 4553738 -1 1416 0.2828282828282828 198 56 "putative ATPase and activator of (R)-hydroxyglutaryl-CoA dehydratase" +BW25113_4335 yjiM 0 4554516 4555667 -1 2510 0.08159722222222222 1152 94 "putative 2-hydroxyglutaryl-CoA dehydratase" +BW25113_4335__5prime yjiM__5prime 0 4555668 4555865 -1 84 0.03535353535353535 198 7 "putative 2-hydroxyglutaryl-CoA dehydratase" +BW25113_4335__3prime yjiM__3prime 0 4554318 4554515 -1 525 0.1414141414141414 198 28 "putative 2-hydroxyglutaryl-CoA dehydratase" +BW25113_4336 yjiN 0 4555783 4557063 -1 1520 0.0624512099921936 1281 80 "zinc-type alcohol dehydrogenase-like protein" +BW25113_4336__5prime yjiN__5prime 0 4557064 4557261 -1 278 0.06565656565656566 198 13 "zinc-type alcohol dehydrogenase-like protein" +BW25113_4336__3prime yjiN__3prime 0 4555585 4555782 -1 95 0.030303030303030304 198 6 "zinc-type alcohol dehydrogenase-like protein" +BW25113_4337 mdtM 0 4557104 4558336 -1 2600 0.11192214111922141 1233 138 "multidrug efflux system protein" +BW25113_4337__5prime mdtM__5prime 0 4558337 4558534 -1 469 0.17676767676767677 198 35 "multidrug efflux system protein" +BW25113_4337__3prime mdtM__3prime 0 4556906 4557103 -1 230 0.045454545454545456 198 9 "multidrug efflux system protein" +BW25113_4339 yjiP 0 4558815 4559735 1 6752 0.18132464712269272 921 167 "4558814_4559735" +BW25113_4339__5prime yjiP__5prime 0 4558617 4558814 1 197 0.06060606060606061 198 12 "4558814_4559735" +BW25113_4339__3prime yjiP__3prime 0 4559736 4559933 1 281 0.09090909090909091 198 18 "4558814_4559735" +4559762_4559861 4559762_4559861 0 4559763 4559861 1 188 0.08080808080808081 99 8 "4559762_4559861" +4559762_4559861__5prime 4559762_4559861__5prime 0 4559565 4559762 1 653 0.14646464646464646 198 29 "4559762_4559861" +4559762_4559861__3prime 4559762_4559861__3prime 0 4559862 4560059 1 398 0.09090909090909091 198 18 "4559762_4559861" +BW25113_4340 yjiR 0 4559979 4561391 -1 4402 0.12880396319886767 1413 182 "putative DNA-binding transcriptional regulator/putative aminotransferase" +BW25113_4340__5prime yjiR__5prime 0 4561392 4561589 -1 699 0.20707070707070707 198 41 "putative DNA-binding transcriptional regulator/putative aminotransferase" +BW25113_4340__3prime yjiR__3prime 0 4559781 4559978 -1 363 0.09090909090909091 198 18 "putative DNA-binding transcriptional regulator/putative aminotransferase" +BW25113_4341 yjiS 0 4561568 4561732 1 2190 0.2909090909090909 165 48 "DUF1127 family protein" +BW25113_4341__5prime yjiS__5prime 0 4561370 4561567 1 846 0.23232323232323232 198 46 "DUF1127 family protein" +BW25113_4341__3prime yjiS__3prime 0 4561733 4561930 1 927 0.22727272727272727 198 45 "DUF1127 family protein" +BW25113_4342 yjiT 0 4562231 4563733 1 14613 0.2375249500998004 1503 357 "4562230_4563733" +BW25113_4342__5prime yjiT__5prime 0 4562033 4562230 1 318 0.05555555555555555 198 11 "4562230_4563733" +BW25113_4342__3prime yjiT__3prime 0 4563734 4563931 1 1037 0.21212121212121213 198 42 "4562230_4563733" +BW25113_4486 yjiV 0 4563736 4566672 1 10602 0.15968675519237316 2937 469 "4563735_4566672" +BW25113_4486__5prime yjiV__5prime 0 4563538 4563735 1 219 0.07575757575757576 198 15 "4563735_4566672" +BW25113_4486__3prime yjiV__3prime 0 4566673 4566870 1 1778 0.32323232323232326 198 64 "4563735_4566672" +BW25113_4345 mcrC 0 4566729 4567775 -1 5940 0.2072588347659981 1047 217 "5-methylcytosine-specific restriction enzyme McrBC and subunit McrC" +BW25113_4345__5prime mcrC__5prime 0 4567776 4567973 -1 3707 0.4292929292929293 198 85 "5-methylcytosine-specific restriction enzyme McrBC and subunit McrC" +BW25113_4345__3prime mcrC__3prime 0 4566531 4566728 -1 1980 0.3484848484848485 198 69 "5-methylcytosine-specific restriction enzyme McrBC and subunit McrC" +BW25113_4346 mcrB 0 4567775 4569154 -1 17654 0.32681159420289857 1380 451 "5-methylcytosine-specific restriction enzyme McrBC and subunit McrB" +BW25113_4346__5prime mcrB__5prime 0 4569155 4569352 -1 2544 0.3181818181818182 198 63 "5-methylcytosine-specific restriction enzyme McrBC and subunit McrB" +BW25113_4346__3prime mcrB__3prime 0 4567577 4567774 -1 3246 0.4292929292929293 198 85 "5-methylcytosine-specific restriction enzyme McrBC and subunit McrB" +BW25113_4347 symE 0 4569316 4569657 -1 3720 0.3654970760233918 342 125 "toxic peptide regulated by antisense sRNA symR" +BW25113_4347__5prime symE__5prime 0 4569658 4569855 -1 3195 0.18181818181818182 198 36 "toxic peptide regulated by antisense sRNA symR" +BW25113_4347__3prime symE__3prime 0 4569118 4569315 -1 2658 0.3484848484848485 198 69 "toxic peptide regulated by antisense sRNA symR" +BW25113_4625 symR 0 4569652 4569728 1 3180 0.45454545454545453 77 35 "sRNA antisense regulator destabilizing divergent and overlapping symE mRNA" +BW25113_4625__5prime symR__5prime 0 4569454 4569651 1 2729 0.3787878787878788 198 75 "sRNA antisense regulator destabilizing divergent and overlapping symE mRNA" +BW25113_4625__3prime symR__3prime 0 4569729 4569926 1 348 0.06060606060606061 198 12 "sRNA antisense regulator destabilizing divergent and overlapping symE mRNA" +BW25113_4348 hsdS 0 4569885 4571279 -1 10229 0.2057347670250896 1395 287 "specificity determinant for hsdM and hsdR" +BW25113_4348__5prime hsdS__5prime 0 4571280 4571477 -1 892 0.15656565656565657 198 31 "specificity determinant for hsdM and hsdR" +BW25113_4348__3prime hsdS__3prime 0 4569687 4569884 -1 3170 0.17676767676767677 198 35 "specificity determinant for hsdM and hsdR" +BW25113_4349 hsdM 0 4571276 4572865 -1 5527 0.11572327044025157 1590 184 "DNA methyltransferase M" +BW25113_4349__5prime hsdM__5prime 0 4572866 4573063 -1 689 0.13131313131313133 198 26 "DNA methyltransferase M" +BW25113_4349__3prime hsdM__3prime 0 4571078 4571275 -1 1087 0.26262626262626265 198 52 "DNA methyltransferase M" +BW25113_4350 hsdR 0 4573066 4576632 -1 7889 0.09896271376506868 3567 353 "4573065_4576632" +BW25113_4350__5prime hsdR__5prime 0 4576633 4576830 -1 516 0.09595959595959595 198 19 "4573065_4576632" +BW25113_4350__3prime hsdR__3prime 0 4572868 4573065 -1 886 0.1414141414141414 198 28 "4573065_4576632" +4575296_4575297 4575296_4575297 0 4575297 4575297 1 0 0.0 1 0 "4575296_4575297" +4575296_4575297__5prime 4575296_4575297__5prime 0 4575099 4575296 1 264 0.06565656565656566 198 13 "4575296_4575297" +4575296_4575297__3prime 4575296_4575297__3prime 0 4575298 4575495 1 253 0.045454545454545456 198 9 "4575296_4575297" +BW25113_4351 mrr 0 4576766 4577680 1 2494 0.12131147540983607 915 111 "methylated adenine and cytosine restriction protein" +BW25113_4351__5prime mrr__5prime 0 4576568 4576765 1 624 0.11616161616161616 198 23 "methylated adenine and cytosine restriction protein" +BW25113_4351__3prime mrr__3prime 0 4577681 4577878 1 774 0.2222222222222222 198 44 "methylated adenine and cytosine restriction protein" +4577688_4577715 4577688_4577715 0 4577689 4577715 1 84 0.25925925925925924 27 7 "4577688_4577715" +4577688_4577715__5prime 4577688_4577715__5prime 0 4577491 4577688 1 289 0.12121212121212122 198 24 "4577688_4577715" +4577688_4577715__3prime 4577688_4577715__3prime 0 4577716 4577913 1 794 0.2222222222222222 198 44 "4577688_4577715" +BW25113_4352 yjiA 0 4577726 4578682 -1 3467 0.1588296760710554 957 152 "GTP-binding protein and putative GTPase" +BW25113_4352__5prime yjiA__5prime 0 4578683 4578880 -1 252 0.06060606060606061 198 12 "GTP-binding protein and putative GTPase" +BW25113_4352__3prime yjiA__3prime 0 4577528 4577725 -1 289 0.13131313131313133 198 26 "GTP-binding protein and putative GTPase" +BW25113_4353 yjiX 0 4578693 4578896 -1 213 0.058823529411764705 204 12 "DUF466 family protein" +BW25113_4353__5prime yjiX__5prime 0 4578897 4579094 -1 1359 0.24242424242424243 198 48 "DUF466 family protein" +BW25113_4353__3prime yjiX__3prime 0 4578495 4578692 -1 588 0.12121212121212122 198 24 "DUF466 family protein" +BW25113_4354 yjiY 0 4578946 4581096 -1 12129 0.1910739191073919 2151 411 "putative transporter" +BW25113_4354__5prime yjiY__5prime 0 4581097 4581294 -1 1234 0.21717171717171718 198 43 "putative transporter" +BW25113_4354__3prime yjiY__3prime 0 4578748 4578945 -1 332 0.07575757575757576 198 15 "putative transporter" +BW25113_4355 tsr 0 4581474 4583129 1 4689 0.12681159420289856 1656 210 "methyl-accepting chemotaxis protein I and serine sensor receptor" +BW25113_4355__5prime tsr__5prime 0 4581276 4581473 1 159 0.04040404040404041 198 8 "methyl-accepting chemotaxis protein I and serine sensor receptor" +BW25113_4355__3prime tsr__3prime 0 4583130 4583327 1 558 0.1111111111111111 198 22 "methyl-accepting chemotaxis protein I and serine sensor receptor" +4583142_4583168 4583142_4583168 0 4583143 4583168 1 49 0.15384615384615385 26 4 "4583142_4583168" +4583142_4583168__5prime 4583142_4583168__5prime 0 4582945 4583142 1 353 0.07575757575757576 198 15 "4583142_4583168" +4583142_4583168__3prime 4583142_4583168__3prime 0 4583169 4583366 1 688 0.12121212121212122 198 24 "4583142_4583168" +BW25113_4356 yjjL 0 4583178 4584539 -1 6154 0.18795888399412627 1362 256 "L-galactonate transporter" +BW25113_4356__5prime yjjL__5prime 0 4584540 4584737 -1 1918 0.2676767676767677 198 53 "L-galactonate transporter" +BW25113_4356__3prime yjjL__3prime 0 4582980 4583177 -1 241 0.0707070707070707 198 14 "L-galactonate transporter" +BW25113_4357 yjjM 0 4584754 4585668 -1 12120 0.25245901639344265 915 231 "yjjMN operon transcriptional activator" +BW25113_4357__5prime yjjM__5prime 0 4585669 4585866 -1 566 0.1414141414141414 198 28 "yjjMN operon transcriptional activator" +BW25113_4357__3prime yjjM__3prime 0 4584556 4584753 -1 1968 0.2777777777777778 198 55 "yjjMN operon transcriptional activator" +BW25113_4358 yjjN 0 4585807 4586829 1 5755 0.19550342130987292 1023 200 "L-galactonate oxidoreductase" +BW25113_4358__5prime yjjN__5prime 0 4585609 4585806 1 1010 0.21212121212121213 198 42 "L-galactonate oxidoreductase" +BW25113_4358__3prime yjjN__3prime 0 4586830 4587027 1 798 0.15656565656565657 198 31 "L-galactonate oxidoreductase" +4586913_4586952 4586913_4586952 0 4586914 4586952 1 346 0.38461538461538464 39 15 "4586913_4586952" +4586913_4586952__5prime 4586913_4586952__5prime 0 4586716 4586913 1 353 0.1111111111111111 198 22 "4586913_4586952" +4586913_4586952__3prime 4586913_4586952__3prime 0 4586953 4587150 1 1848 0.26262626262626265 198 52 "4586913_4586952" +BW25113_4359 opgB 0 4586967 4589258 -1 9235 0.14354275741710296 2292 329 "phosphoglycerol transferases I and II" +BW25113_4359__5prime opgB__5prime 0 4589259 4589456 -1 744 0.14646464646464646 198 29 "phosphoglycerol transferases I and II" +BW25113_4359__3prime opgB__3prime 0 4586769 4586966 -1 689 0.16666666666666666 198 33 "phosphoglycerol transferases I and II" +BW25113_4360 yjjA 0 4589512 4590006 -1 2008 0.15151515151515152 495 75 "putative DUF2501 family periplasmic protein" +BW25113_4360__5prime yjjA__5prime 0 4590007 4590204 -1 389 0.09595959595959595 198 19 "putative DUF2501 family periplasmic protein" +BW25113_4360__3prime yjjA__3prime 0 4589314 4589511 -1 674 0.11616161616161616 198 23 "putative DUF2501 family periplasmic protein" +BW25113_4361 dnaC 0 4590055 4590792 -1 45 0.0027100271002710027 738 2 "DNA biosynthesis protein" +BW25113_4361__5prime dnaC__5prime 0 4590793 4590990 -1 72 0.015151515151515152 198 3 "DNA biosynthesis protein" +BW25113_4361__3prime dnaC__3prime 0 4589857 4590054 -1 906 0.16666666666666666 198 33 "DNA biosynthesis protein" +BW25113_4362 dnaT 0 4590795 4591334 -1 23 0.001851851851851852 540 1 "DNA biosynthesis protein (primosomal protein I)" +BW25113_4362__5prime dnaT__5prime 0 4591335 4591532 -1 303 0.045454545454545456 198 9 "DNA biosynthesis protein (primosomal protein I)" +BW25113_4362__3prime dnaT__3prime 0 4590597 4590794 -1 68 0.015151515151515152 198 3 "DNA biosynthesis protein (primosomal protein I)" +BW25113_4363 yjjB 0 4591441 4591914 -1 1183 0.10970464135021098 474 52 "DUF3815 family inner membrane protein" +BW25113_4363__5prime yjjB__5prime 0 4591915 4592112 -1 862 0.1717171717171717 198 34 "DUF3815 family inner membrane protein" +BW25113_4363__3prime yjjB__3prime 0 4591243 4591440 -1 182 0.025252525252525252 198 5 "DUF3815 family inner membrane protein" +BW25113_4364 yjjP 0 4591905 4592675 -1 5453 0.22957198443579765 771 177 "4591904_4592675" +BW25113_4364__5prime yjjP__5prime 0 4592676 4592873 -1 2601 0.37373737373737376 198 74 "4591904_4592675" +BW25113_4364__3prime yjjP__3prime 0 4591707 4591904 -1 869 0.17676767676767677 198 35 "4591904_4592675" +4592325_4592326 4592325_4592326 0 4592326 4592326 1 0 0.0 1 0 "4592325_4592326" +4592325_4592326__5prime 4592325_4592326__5prime 0 4592128 4592325 1 549 0.10101010101010101 198 20 "4592325_4592326" +4592325_4592326__3prime 4592325_4592326__3prime 0 4592327 4592524 1 1283 0.25757575757575757 198 51 "4592325_4592326" +BW25113_4365 yjjQ 0 4593294 4594019 1 22611 0.4628099173553719 726 336 "putative transcriptional regulator" +BW25113_4365__5prime yjjQ__5prime 0 4593096 4593293 1 3725 0.36363636363636365 198 72 "putative transcriptional regulator" +BW25113_4365__3prime yjjQ__3prime 0 4594020 4594217 1 4785 0.4797979797979798 198 95 "putative transcriptional regulator" +BW25113_4366 bglJ 0 4593977 4594654 1 16306 0.48525073746312686 678 329 "bgl operon transcriptional activator" +BW25113_4366__5prime bglJ__5prime 0 4593779 4593976 1 5626 0.4696969696969697 198 93 "bgl operon transcriptional activator" +BW25113_4366__3prime bglJ__3prime 0 4594655 4594852 1 3257 0.29797979797979796 198 59 "bgl operon transcriptional activator" +BW25113_4367 fhuF 0 4594692 4595480 -1 4754 0.16603295310519645 789 131 "ferric iron reductase involved in ferric hydroximate transport" +BW25113_4367__5prime fhuF__5prime 0 4595481 4595678 -1 129 0.045454545454545456 198 9 "ferric iron reductase involved in ferric hydroximate transport" +BW25113_4367__3prime fhuF__3prime 0 4594494 4594691 -1 3958 0.37373737373737376 198 74 "ferric iron reductase involved in ferric hydroximate transport" +BW25113_4567 yjjZ 0 4595621 4595857 1 577 0.10126582278481013 237 24 "uncharacterized protein" +BW25113_4567__5prime yjjZ__5prime 0 4595423 4595620 1 176 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_4567__3prime yjjZ__3prime 0 4595858 4596055 1 402 0.11616161616161616 198 23 "uncharacterized protein" +BW25113_4368 leuV 0 4595896 4595982 -1 273 0.19540229885057472 87 17 "tRNA-Leu" +BW25113_4368__5prime leuV__5prime 0 4595983 4596180 -1 403 0.10606060606060606 198 21 "tRNA-Leu" +BW25113_4368__3prime leuV__3prime 0 4595698 4595895 -1 237 0.05555555555555555 198 11 "tRNA-Leu" +BW25113_4369 leuP 0 4596017 4596103 -1 220 0.1839080459770115 87 16 "tRNA-Leu" +BW25113_4369__5prime leuP__5prime 0 4596104 4596301 -1 348 0.09595959595959595 198 19 "tRNA-Leu" +BW25113_4369__3prime leuP__3prime 0 4595819 4596016 -1 324 0.09595959595959595 198 19 "tRNA-Leu" +BW25113_4370 leuQ 0 4596132 4596218 -1 116 0.11494252873563218 87 10 "tRNA-Leu" +BW25113_4370__5prime leuQ__5prime 0 4596219 4596416 -1 416 0.12121212121212122 198 24 "tRNA-Leu" +BW25113_4370__3prime leuQ__3prime 0 4595934 4596131 -1 524 0.15151515151515152 198 30 "tRNA-Leu" +4596374_4596466 4596374_4596466 0 4596375 4596466 1 155 0.09782608695652174 92 9 "4596374_4596466" +4596374_4596466__5prime 4596374_4596466__5prime 0 4596177 4596374 1 426 0.12626262626262627 198 25 "4596374_4596466" +4596374_4596466__3prime 4596374_4596466__3prime 0 4596467 4596664 1 461 0.1111111111111111 198 22 "4596374_4596466" +BW25113_4371 rsmC 0 4596486 4597517 -1 2449 0.09593023255813954 1032 99 "16S rRNA m(2)G1207 methyltransferase and SAM-dependent" +BW25113_4371__5prime rsmC__5prime 0 4597518 4597715 -1 403 0.08080808080808081 198 16 "16S rRNA m(2)G1207 methyltransferase and SAM-dependent" +BW25113_4371__3prime rsmC__3prime 0 4596288 4596485 -1 467 0.12626262626262627 198 25 "16S rRNA m(2)G1207 methyltransferase and SAM-dependent" +BW25113_4372 holD 0 4597620 4598033 1 37 0.007246376811594203 414 3 "DNA polymerase III and psi subunit" +BW25113_4372__5prime holD__5prime 0 4597422 4597619 1 619 0.13131313131313133 198 26 "DNA polymerase III and psi subunit" +BW25113_4372__3prime holD__3prime 0 4598034 4598231 1 702 0.16161616161616163 198 32 "DNA polymerase III and psi subunit" +BW25113_4373 rimI 0 4598002 4598448 1 1453 0.12304250559284116 447 55 "ribosomal-protein-S18-alanine N-acetyltransferase" +BW25113_4373__5prime rimI__5prime 0 4597804 4598001 1 0 0.0 198 0 "ribosomal-protein-S18-alanine N-acetyltransferase" +BW25113_4373__3prime rimI__3prime 0 4598449 4598646 1 517 0.1111111111111111 198 22 "ribosomal-protein-S18-alanine N-acetyltransferase" +BW25113_4374 yjjG 0 4598463 4599140 1 1788 0.11651917404129794 678 79 "dUMP phosphatase" +BW25113_4374__5prime yjjG__5prime 0 4598265 4598462 1 878 0.13131313131313133 198 26 "dUMP phosphatase" +BW25113_4374__3prime yjjG__3prime 0 4599141 4599338 1 223 0.06060606060606061 198 12 "dUMP phosphatase" +BW25113_4375 prfC 0 4599231 4600820 1 6535 0.1440251572327044 1590 229 "peptide chain release factor RF-3" +BW25113_4375__5prime prfC__5prime 0 4599033 4599230 1 676 0.10606060606060606 198 21 "peptide chain release factor RF-3" +BW25113_4375__3prime prfC__3prime 0 4600821 4601018 1 382 0.06565656565656566 198 13 "peptide chain release factor RF-3" +BW25113_4376 osmY 0 4601213 4601818 1 1823 0.15181518151815182 606 92 "periplasmic protein" +BW25113_4376__5prime osmY__5prime 0 4601015 4601212 1 670 0.13131313131313133 198 26 "periplasmic protein" +BW25113_4376__3prime osmY__3prime 0 4601819 4602016 1 713 0.21212121212121213 198 42 "periplasmic protein" +BW25113_4568 ytjA 0 4601945 4602106 1 561 0.13580246913580246 162 22 "uncharacterized protein" +BW25113_4568__5prime ytjA__5prime 0 4601747 4601944 1 789 0.18686868686868688 198 37 "uncharacterized protein" +BW25113_4568__3prime ytjA__3prime 0 4602107 4602304 1 573 0.1111111111111111 198 22 "uncharacterized protein" +BW25113_4377 yjjU 0 4602228 4603301 1 2931 0.12476722532588454 1074 134 "putative patatin-like family phospholipase" +BW25113_4377__5prime yjjU__5prime 0 4602030 4602227 1 232 0.045454545454545456 198 9 "putative patatin-like family phospholipase" +BW25113_4377__3prime yjjU__3prime 0 4603302 4603499 1 277 0.06565656565656566 198 13 "putative patatin-like family phospholipase" +BW25113_4378 yjjV 0 4603298 4604077 1 1592 0.09743589743589744 780 76 "putative DNase" +BW25113_4378__5prime yjjV__5prime 0 4603100 4603297 1 250 0.08080808080808081 198 16 "putative DNase" +BW25113_4378__3prime yjjV__3prime 0 4604078 4604275 1 757 0.2222222222222222 198 44 "putative DNase" +4604073_4604461 4604073_4604461 0 4604074 4604461 1 1708 0.2036082474226804 388 79 "4604073_4604461" +4604073_4604461__5prime 4604073_4604461__5prime 0 4603876 4604073 1 724 0.14646464646464646 198 29 "4604073_4604461" +4604073_4604461__3prime 4604073_4604461__3prime 0 4604462 4604659 1 639 0.12626262626262627 198 25 "4604073_4604461" +BW25113_4379 yjjW 0 4604497 4605360 -1 4734 0.21412037037037038 864 185 "putative pyruvate formate lyase activating enzyme" +BW25113_4379__5prime yjjW__5prime 0 4605361 4605558 -1 274 0.0707070707070707 198 14 "putative pyruvate formate lyase activating enzyme" +BW25113_4379__3prime yjjW__3prime 0 4604299 4604496 -1 1058 0.17676767676767677 198 35 "putative pyruvate formate lyase activating enzyme" +BW25113_4380 yjjI 0 4605332 4606882 -1 3499 0.10186976144422953 1551 158 "DUF3029 family protein and putative glycine radical enzyme" +BW25113_4380__5prime yjjI__5prime 0 4606883 4607080 -1 443 0.09595959595959595 198 19 "DUF3029 family protein and putative glycine radical enzyme" +BW25113_4380__3prime yjjI__3prime 0 4605134 4605331 -1 1300 0.2777777777777778 198 55 "DUF3029 family protein and putative glycine radical enzyme" +4606485_4606486 4606485_4606486 0 4606486 4606486 1 0 0.0 1 0 "4606485_4606486" +4606485_4606486__5prime 4606485_4606486__5prime 0 4606288 4606485 1 86 0.03535353535353535 198 7 "4606485_4606486" +4606485_4606486__3prime 4606485_4606486__3prime 0 4606487 4606684 1 794 0.13131313131313133 198 26 "4606485_4606486" +BW25113_4381 deoC 0 4607140 4607919 1 1672 0.07948717948717948 780 62 "2-deoxyribose-5-phosphate aldolase and NAD(P)-linked" +BW25113_4381__5prime deoC__5prime 0 4606942 4607139 1 461 0.07575757575757576 198 15 "2-deoxyribose-5-phosphate aldolase and NAD(P)-linked" +BW25113_4381__3prime deoC__3prime 0 4607920 4608117 1 434 0.1111111111111111 198 22 "2-deoxyribose-5-phosphate aldolase and NAD(P)-linked" +4607933_4608015 4607933_4608015 0 4607934 4608015 1 305 0.23170731707317074 82 19 "4607933_4608015" +4607933_4608015__5prime 4607933_4608015__5prime 0 4607736 4607933 1 329 0.06060606060606061 198 12 "4607933_4608015" +4607933_4608015__3prime 4607933_4608015__3prime 0 4608016 4608213 1 290 0.06060606060606061 198 12 "4607933_4608015" +BW25113_4382 deoA 0 4608046 4609368 1 3414 0.10884353741496598 1323 144 "thymidine phosphorylase" +BW25113_4382__5prime deoA__5prime 0 4607848 4608045 1 425 0.11616161616161616 198 23 "thymidine phosphorylase" +BW25113_4382__3prime deoA__3prime 0 4609369 4609566 1 477 0.12121212121212122 198 24 "thymidine phosphorylase" +BW25113_4383 deoB 0 4609420 4610643 1 3929 0.14869281045751634 1224 182 "phosphopentomutase" +BW25113_4383__5prime deoB__5prime 0 4609222 4609419 1 275 0.06565656565656566 198 13 "phosphopentomutase" +BW25113_4383__3prime deoB__3prime 0 4610644 4610841 1 340 0.08585858585858586 198 17 "phosphopentomutase" +BW25113_4384 deoD 0 4610700 4611419 1 3548 0.17916666666666667 720 129 "purine-nucleoside phosphorylase" +BW25113_4384__5prime deoD__5prime 0 4610502 4610699 1 581 0.1717171717171717 198 34 "purine-nucleoside phosphorylase" +BW25113_4384__3prime deoD__3prime 0 4611420 4611617 1 270 0.06565656565656566 198 13 "purine-nucleoside phosphorylase" +BW25113_4385 yjjJ 0 4611586 4612917 1 2813 0.10285285285285285 1332 137 "putative protein kinase" +BW25113_4385__5prime yjjJ__5prime 0 4611388 4611585 1 213 0.0707070707070707 198 14 "putative protein kinase" +BW25113_4385__3prime yjjJ__3prime 0 4612918 4613115 1 980 0.1414141414141414 198 28 "putative protein kinase" +BW25113_4386 lplA 0 4612918 4613934 -1 3172 0.12684365781710916 1017 129 "lipoate-protein ligase A" +BW25113_4386__5prime lplA__5prime 0 4613935 4614132 -1 1362 0.12626262626262627 198 25 "lipoate-protein ligase A" +BW25113_4386__3prime lplA__3prime 0 4612720 4612917 -1 340 0.06565656565656566 198 13 "lipoate-protein ligase A" +BW25113_4387 ytjB 0 4613962 4614606 -1 3308 0.15813953488372093 645 102 "SMP_2 family putative membrane-anchored periplasmic protein" +BW25113_4387__5prime ytjB__5prime 0 4614607 4614804 -1 566 0.15151515151515152 198 30 "SMP_2 family putative membrane-anchored periplasmic protein" +BW25113_4387__3prime ytjB__3prime 0 4613764 4613961 -1 510 0.11616161616161616 198 23 "SMP_2 family putative membrane-anchored periplasmic protein" +BW25113_4388 serB 0 4614712 4615680 1 2905 0.13209494324045407 969 128 "3-phosphoserine phosphatase" +BW25113_4388__5prime serB__5prime 0 4614514 4614711 1 1116 0.23737373737373738 198 47 "3-phosphoserine phosphatase" +BW25113_4388__3prime serB__3prime 0 4615681 4615878 1 1097 0.15151515151515152 198 30 "3-phosphoserine phosphatase" +BW25113_4389 radA 0 4615729 4617111 1 5266 0.14172089660159073 1383 196 "DNA repair protein" +BW25113_4389__5prime radA__5prime 0 4615531 4615728 1 1194 0.18181818181818182 198 36 "DNA repair protein" +BW25113_4389__3prime radA__3prime 0 4617112 4617309 1 446 0.12121212121212122 198 24 "DNA repair protein" +BW25113_4390 nadR 0 4617132 4618364 1 4313 0.14193025141930252 1233 175 "trifunctional protein: nicotinamide mononucleotide adenylyltransferase and ribosylnicotinamide kinase and transcriptional repressor" +BW25113_4390__5prime nadR__5prime 0 4616934 4617131 1 432 0.08585858585858586 198 17 "trifunctional protein: nicotinamide mononucleotide adenylyltransferase and ribosylnicotinamide kinase and transcriptional repressor" +BW25113_4390__3prime nadR__3prime 0 4618365 4618562 1 353 0.1111111111111111 198 22 "trifunctional protein: nicotinamide mononucleotide adenylyltransferase and ribosylnicotinamide kinase and transcriptional repressor" +4618511_4618661 4618511_4618661 0 4618512 4618661 1 394 0.12 150 18 "4618511_4618661" +4618511_4618661__5prime 4618511_4618661__5prime 0 4618314 4618511 1 760 0.09090909090909091 198 18 "4618511_4618661" +4618511_4618661__3prime 4618511_4618661__3prime 0 4618662 4618859 1 699 0.12626262626262627 198 25 "4618511_4618661" +BW25113_4391 yjjK 0 4618672 4620339 -1 4785 0.10731414868105515 1668 179 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_4391__5prime yjjK__5prime 0 4620340 4620537 -1 687 0.13131313131313133 198 26 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_4391__3prime yjjK__3prime 0 4618474 4618671 -1 467 0.13636363636363635 198 27 "putative transporter subunit of ABC superfamily: ATP-binding component" +BW25113_4392 slt 0 4620550 4622487 1 6142 0.14035087719298245 1938 272 "lytic murein transglycosylase and soluble" +BW25113_4392__5prime slt__5prime 0 4620352 4620549 1 680 0.12626262626262627 198 25 "lytic murein transglycosylase and soluble" +BW25113_4392__3prime slt__3prime 0 4622488 4622685 1 588 0.1717171717171717 198 34 "lytic murein transglycosylase and soluble" +BW25113_4393 trpR 0 4622577 4622903 1 1183 0.15902140672782875 327 52 "transcriptional repressor and tryptophan-binding" +BW25113_4393__5prime trpR__5prime 0 4622379 4622576 1 435 0.15151515151515152 198 30 "transcriptional repressor and tryptophan-binding" +BW25113_4393__3prime trpR__3prime 0 4622904 4623101 1 533 0.13636363636363635 198 27 "transcriptional repressor and tryptophan-binding" +4622907_4623047 4622907_4623047 0 4622908 4623047 1 409 0.11428571428571428 140 16 "4622907_4623047" +4622907_4623047__5prime 4622907_4623047__5prime 0 4622710 4622907 1 590 0.10606060606060606 198 21 "4622907_4623047" +4622907_4623047__3prime 4622907_4623047__3prime 0 4623048 4623245 1 460 0.16666666666666666 198 33 "4622907_4623047" +BW25113_4394 yjjX 0 4623050 4623562 -1 637 0.07602339181286549 513 39 "non-canonical purine NTP phosphatase and ITPase/XTPase" +BW25113_4394__5prime yjjX__5prime 0 4623563 4623760 -1 1054 0.16666666666666666 198 33 "non-canonical purine NTP phosphatase and ITPase/XTPase" +BW25113_4394__3prime yjjX__3prime 0 4622852 4623049 -1 689 0.1414141414141414 198 28 "non-canonical purine NTP phosphatase and ITPase/XTPase" +BW25113_4395 ytjC 0 4623614 4624261 1 2885 0.16666666666666666 648 108 "phosphatase" +BW25113_4395__5prime ytjC__5prime 0 4623416 4623613 1 138 0.030303030303030304 198 6 "phosphatase" +BW25113_4395__3prime ytjC__3prime 0 4624262 4624459 1 963 0.2222222222222222 198 44 "phosphatase" +BW25113_4396 rob 0 4624258 4625127 -1 4992 0.2206896551724138 870 192 "right oriC-binding transcriptional activator and AraC family" +BW25113_4396__5prime rob__5prime 0 4625128 4625325 -1 166 0.04040404040404041 198 8 "right oriC-binding transcriptional activator and AraC family" +BW25113_4396__3prime rob__3prime 0 4624060 4624257 -1 1165 0.21717171717171718 198 43 "right oriC-binding transcriptional activator and AraC family" +BW25113_4397 creA 0 4625338 4625811 1 1459 0.1877637130801688 474 89 "putative periplasmic protein" +BW25113_4397__5prime creA__5prime 0 4625140 4625337 1 166 0.04040404040404041 198 8 "putative periplasmic protein" +BW25113_4397__3prime creA__3prime 0 4625812 4626009 1 586 0.12121212121212122 198 24 "putative periplasmic protein" +BW25113_4398 creB 0 4625824 4626513 1 2660 0.1463768115942029 690 101 "response regulator in two-component regulatory system with CreC" +BW25113_4398__5prime creB__5prime 0 4625626 4625823 1 520 0.16666666666666666 198 33 "response regulator in two-component regulatory system with CreC" +BW25113_4398__3prime creB__3prime 0 4626514 4626711 1 330 0.07575757575757576 198 15 "response regulator in two-component regulatory system with CreC" +BW25113_4399 creC 0 4626513 4627937 1 4132 0.11789473684210526 1425 168 "sensory histidine kinase in two-component regulatory system with CreB or PhoB and regulator of the CreBC regulon" +BW25113_4399__5prime creC__5prime 0 4626315 4626512 1 1001 0.18686868686868688 198 37 "sensory histidine kinase in two-component regulatory system with CreB or PhoB and regulator of the CreBC regulon" +BW25113_4399__3prime creC__3prime 0 4627938 4628135 1 517 0.1111111111111111 198 22 "sensory histidine kinase in two-component regulatory system with CreB or PhoB and regulator of the CreBC regulon" +BW25113_4400 creD 0 4627995 4629347 1 6834 0.14929785661492978 1353 202 "inner membrane protein" +BW25113_4400__5prime creD__5prime 0 4627797 4627994 1 593 0.10606060606060606 198 21 "inner membrane protein" +BW25113_4400__3prime creD__3prime 0 4629348 4629545 1 150 0.06060606060606061 198 12 "inner membrane protein" +BW25113_4401 arcA 0 4629407 4630123 -1 352 0.03626220362622036 717 26 "response regulator in two-component regulatory system with ArcB or CpxA" +BW25113_4401__5prime arcA__5prime 0 4630124 4630321 -1 337 0.08080808080808081 198 16 "response regulator in two-component regulatory system with ArcB or CpxA" +BW25113_4401__3prime arcA__3prime 0 4629209 4629406 -1 455 0.09090909090909091 198 18 "response regulator in two-component regulatory system with ArcB or CpxA" +BW25113_4402 yjjY 0 4630219 4630359 1 349 0.11347517730496454 141 16 "uncharacterized protein" +BW25113_4402__5prime yjjY__5prime 0 4630021 4630218 1 82 0.03535353535353535 198 7 "uncharacterized protein" +BW25113_4402__3prime yjjY__3prime 0 4630360 4630557 1 326 0.0707070707070707 198 14 "uncharacterized protein" +BW25113_4403 yjtD 0 4630759 4631445 1 1581 0.12081513828238719 687 83 "putative methyltransferase" +BW25113_4403__5prime yjtD__5prime 0 4630561 4630758 1 107 0.025252525252525252 198 5 "putative methyltransferase" +BW25113_4403__3prime yjtD__3prime 0 4631446 4631469 1 0 0.0 24 0 "putative methyltransferase" diff --git a/tests/data/comparison/presenceabsence/expected_logfc.csv b/tests/data/comparison/presenceabsence/expected_logfc.csv index 2ac4056..75a9eac 100644 --- a/tests/data/comparison/presenceabsence/expected_logfc.csv +++ b/tests/data/comparison/presenceabsence/expected_logfc.csv @@ -1,5 +1,5 @@ Sample thrL thrA thrB thrC yaaX yaaA yaaJ talB mog satP yaaW yaaI dnaK dnaJ insL1 mokC hokC sokC nhaA nhaR insB1 insA rpsT yaaY ribF ileS lspA fkpB ispH rihC dapB carA carB caiF caiE caiD caiC caiB caiA caiT fixA fixB fixC fixX yaaU kefF kefC folA apaH apaG rsmA pdxA surA lptD djlA yabP rluA rapA polB araD araC yabI thiQ thiP thiB sgrR sgrS sgrT setA leuD leuC leuB leuA leuL leuO ilvI ilvH cra mraZ rsmH ftsL ftsI murE murF mraY murD ftsW murG murC ddlB ftsQ ftsA ftsA ftsZ lpxC secM secA mutT yacG zapD coaE guaC hofC hofB ppdD nadC ampD ampE aroP pdhR aceE aceF lpd yacH acnB yacL speD speE yacC cueO gcd hpt can yadG yadH yadI yadE panD yadD panC panB yadC yadK yadL yadM htrE yadV yadN folK pcnB gluQ dksA sfsA ligT hrpB mrcB fhuA fhuC fhuD fhuB hemL clcA erpA yadS btuF mtn dgt degP cdaR yaeH yaeI dapD glnD map tff rpsB tsf pyrH frr dxr ispU cdsA rseP bamA skp lpxD fabZ lpxA lpxB rnhB dnaE accA ldcC yaeR tilS rof yaeP yaeQ arfB nlpE yaeF proS tsaA rcsF metQ metI metN gmhB rrsH ileV alaV rrlH rrfH aspU dkgB yafC yafD yafE mltD gloB yafS rnhA dnaQ aspV yafT ykfM yafU yafF yafV ivy fadE gmhA yafJ yafK yafQ dinJ yafL rayT lfhA lafU dinB yafN yafO yafP ykfJ prfH pepD gpt frsA crl phoE proB proA thrW ykfN ykfI yafW ykfH ykfG yafX ykfF ykfB yafY ykfL ykfK yafZ ykfA perR insN insI1 eyeA ykfC insH1 mmuP mmuM afuC afuB insB1 insA insI1 insX yagB yagA yagE yagF yagG yagH yagI argF ykgS insB1 insA yagJ yagK yagL yagM yagN intF ptwF yagP ykgT paoD paoC paoB paoA yagU ykgJ ecpE ecpD ecpC ecpB ecpA ecpR ykgL ykgO ykgM ykgR ykgP eaeH insE1 insF1 ykgA ykgQ rclC rclB rclA rclR ykgE ykgF ykgG ykgH betA betB betI betT yahA yahB yahC yahD yahE yahF yahG yahI yahJ yahK yahL yahM yahN yahO prpR prpB prpC prpD prpE codB codA cynR cynT cynS cynX lacA lacY lacZ lacI mhpR mhpA mhpB mhpC mhpD mhpF mhpE mhpT yaiL frmB frmA frmR yaiO yaiX insC1 insD1 yaiP yaiS tauA tauB tauC tauD hemB yaiT insF1 insE1 yaiV ampH sbmA yaiW yaiY yaiZ ddlA iraP phoA psiF yaiC proC yaiI aroL yaiA aroM yaiE ykiA rdgC mak araJ sbcC sbcD phoB phoR brnQ proY malZ acpH queA tgt yajC secD secF yajD tsx yajI nrdR ribD ribE nusB thiL pgpA yajO dxs ispA xseB thiI yajL panE yajQ yajR cyoE cyoD cyoC cyoB cyoA ampG yajG bolA tig clpP clpX lon lon hupB ppiD ybaV fadM queC ybaE cof ybaO mdlA mdlB glnK amtB tesB ybaY ybaZ ffs ybaA ylaB ylaC maa hha tomB acrB acrA acrR mscK ybaM priC ybaN apt dnaX ybaB recR htpG adk hemH aes gsk ybaL fsr ushA ybaK chiX ybaP ybaQ copA glsA ybaT cueR ybbJ qmcA fetA fetB ybbN ybbO tesA ybbA ybbP rhsD ybbC rhsH ybbD ylbI ylbG mnmH allS allA allR gcl hyi glxR ybbW allB ybbY glxK allE allC allD fdrA ylbE ylbF ybcF purK purE lpxH ppiB cysS ybcI ybcJ folD sfmA sfmC sfmD sfmD sfmH sfmF sfmZ argU intD xisD exoD peaD renD insE1 insF1 emrE ybcK ybcL ybcM ylcH ybcN ninE ybcO rusA ylcG quuD nmpC insH1 essD rrrD rzpD rzoD rzoD borD ybcV ybcW ylcI nohD aaaD tfaD ybcY tfaX appY ompT pauD envY ybcH nfrA nfrB cusS cusR cusC cusF cusB cusA pheP ybdG nfsB ybdF ybdJ ybdK sokE hokE insL1 entD fepA fes ybdZ entF fepE fepC fepG fepD entS fepB entC entE entB entA entH cstA ybdD ybdH ybdL ybdM ybdN ybdO dsbG ahpC ahpF uspG ybdR rnk rna citT citG citX citF citE citD citC citA citB dcuC pagP cspE flc ybeM tatE lipA ybeF lipB ybeD dacA rlpA mrdB mrdA rlmH rsfS cobC nadD holA lptE leuS ybeL ybeQ ybeR djlB ybeT ybeU djlC hscC rihA gltL gltK gltJ gltI insH1 lnt ybeX ybeY ybeZ miaB ubiF glnX glnV metU glnW glnU leuW metT asnB umpH nagC nagA nagB nagE nagE glnS chiP chiQ fur uof fldA ybfE ybfF seqA pgm ybfP ybfG ybfI potE speF ybfK kdpE kdpD kdpC kdpB kdpA kdpF ybfA rhsC ybfB rhsO ybfC ybfQ ybfL ybfD ybgA phr dtpD ybgI ybgJ ybgK ybgL nei abrB ybgO ybgP ybgQ ybgD gltA sdhC sdhD sdhA sdhB sucA sucB sucC sucD mngR mngA mngB cydA cydB cydX ybgE ybgC tolQ tolR tolA tolB pal ybgF lysT valT lysW valZ lysY lysZ lysQ nadA pnuC zitB ybgS aroG gpmA galM galK galT galE modF modE acrZ modA modB modC ybhA pgl ybhD ybhH ybhI ybhJ ybhC ybhB bioA bioB bioF bioC bioD uvrB ybhK moaA moaB moaC moaD moaE ybhL ybhM ybhN clsB ybhP ybhQ ybhR ybhS ybhF ybhG ybiH rhlE ybiA dinG ybiB ybiC ybiJ ybiI ybiX fiu mcbA rlmF ybiO glnQ glnP glnH dps rhtA ompX ybiP mntS mntR ybiR ldtB ybiT ybiU ybiV ybiW ybiY fsaA moeB moeA iaaA gsiA gsiB gsiC gsiD yliE yliF rimO bssR yliI gstB dacC deoR ybjG mdfA ybjH ybjI ybjJ rcdA rybB ybjL ybjM grxA ybjC nfsA rimK ybjN potF potG potH potI ybjO rlmC artJ artM artQ artI artP ybjP ybjQ amiD ybjS ybjT ltaE poxB hcr hcp ybjE aqpZ ybjD ybjX macA macB cspD clpS clpA serW infA aat cydC cydD trxB lrp ftsK lolA rarA serS dmsA dmsB dmsC ycaC ycaD ycaM ycaN ycaK pflA pflB focA ycaO ycaP serC aroA ycaL cmk rpsA ihfB ycaI msbA lpxK ycaQ ycaR kdsB ycbJ ycbC smtA mukF mukF mukE mukB ldtD ycbK ycbL aspC ompF 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tests/data/pipeline/output/small_control_high_insertions/reverse.plot.gz.stats.ambig.csv diff --git a/tests/data/essentiality/output/small_control_high_insertions/reverse.plot.gz.stats.essen.csv b/tests/data/pipeline/output/small_control_high_insertions/reverse.plot.gz.stats.essen.csv similarity index 100% rename from tests/data/essentiality/output/small_control_high_insertions/reverse.plot.gz.stats.essen.csv rename to tests/data/pipeline/output/small_control_high_insertions/reverse.plot.gz.stats.essen.csv diff --git a/tests/py/comparison/comparison_test.py b/tests/py/comparison/comparison_test.py deleted file mode 100644 index 3520d64..0000000 --- a/tests/py/comparison/comparison_test.py +++ /dev/null @@ -1,56 +0,0 @@ -import filecmp -import os -import shutil -import unittest - -from quatradis.comparison.comparison import prep_essentiality_pipeline_output_for_comparison, run_comparisons -from quatradis.comparison.plot_logfc import PlotLogOptions - -data_dir = os.path.join('data', 'essentiality', 'output') -data_comp_dir = os.path.join('data', 'comparison') - - - -class TestComparison(unittest.TestCase): - - def setUp(self): - self.embl_file = os.path.join(data_dir, 'prepared.embl') - - - - def test_prep(self): - controls_all, controls_only_ess, conditions_all, conditions_only_ess = prep_essentiality_pipeline_output_for_comparison( - [os.path.join(data_dir, 'small_control')], [os.path.join(data_dir, 'small_case')], 'combined') - - self.assertEquals(['data/essentiality/output/small_case/combined.plot.gz.stats.all.tsv'], conditions_all) - self.assertEquals(['data/essentiality/output/small_control/combined.plot.gz.stats.all.tsv'], controls_all) - self.assertEquals(['data/essentiality/output/small_case/combined.plot.gz.stats.essen.csv'], conditions_only_ess) - self.assertEquals(['data/essentiality/output/small_control/combined.plot.gz.stats.essen.csv'], controls_only_ess) - - def test_small_real(self): - controls_all, controls_only_ess, conditions_all, conditions_only_ess = prep_essentiality_pipeline_output_for_comparison( - [os.path.join(data_dir, 'small_control')], [os.path.join(data_dir, 'small_case')], 'combined') - - options = PlotLogOptions(genome_length=50000, minimum_logfc=1, maximum_pvalue=1, maximum_qvalue=1, minimum_logcpm=1, window_size=100, - span_gaps=0, report_decreased_insertions=True, minimum_block=1) - - run_comparisons(controls_all, conditions_all, controls_only_ess, conditions_only_ess, self.embl_file, comparison_options=options, prefix='testoutput', verbose=False) - - self.assertTrue(os.path.exists('testoutput')) - shutil.rmtree("testoutput") - - def test_ignore_decreased_insertions(self): - controls_all, controls_only_ess, conditions_all, conditions_only_ess = prep_essentiality_pipeline_output_for_comparison( - [os.path.join(data_dir, 'small_control_high_insertions')], [os.path.join(data_dir, 'small_case')], 'combined') - - options = PlotLogOptions(genome_length=50000, minimum_logfc=1, maximum_pvalue=1, maximum_qvalue=1, - minimum_logcpm=1, window_size=100, - span_gaps=0, report_decreased_insertions=False, minimum_block=1) - - run_comparisons(controls_all, conditions_all, controls_only_ess, conditions_only_ess, self.embl_file, - comparison_options=options, prefix='testoutputx', verbose=False) - - self.assertTrue(os.path.exists('testoutputx')) - shutil.rmtree("testoutputx") - - diff --git a/tests/py/comparison/split_test.py b/tests/py/comparison/split_test.py new file mode 100644 index 0000000..31b36c8 --- /dev/null +++ b/tests/py/comparison/split_test.py @@ -0,0 +1,29 @@ +import filecmp +import shutil +import unittest +import os +from quatradis.comparison.split import split_plot + +data_dir = os.path.join('data', 'comparison', 'split') + + +class TestSplit(unittest.TestCase): + + def test_split_plot(self): + output_dir = os.path.join(data_dir, "small_case", "output") + + split_plot(os.path.join(data_dir, 'small_case.insert_site_plot.gz'), output_dir, minimum_threshold=5) + + self.assertTrue(os.path.exists(os.path.join(output_dir, "combined.plot.gz"))) + self.assertTrue(filecmp.cmp(os.path.join(output_dir, "combined.plot.gz"), + os.path.join(data_dir, "small_case", "combined.plot.gz"))) + + self.assertTrue(os.path.exists(os.path.join(output_dir, "forward.plot.gz"))) + self.assertTrue(filecmp.cmp(os.path.join(output_dir, "forward.plot.gz"), + os.path.join(data_dir, "small_case", "forward.plot.gz"))) + + self.assertTrue(os.path.exists(os.path.join(output_dir, "reverse.plot.gz"))) + self.assertTrue(filecmp.cmp(os.path.join(output_dir, "reverse.plot.gz"), + os.path.join(data_dir, "small_case", "reverse.plot.gz"))) + + shutil.rmtree(output_dir) diff --git a/tests/py/essentiality/prepare_input_files_test.py b/tests/py/essentiality/prepare_input_files_test.py deleted file mode 100644 index 8754f09..0000000 --- a/tests/py/essentiality/prepare_input_files_test.py +++ /dev/null @@ -1,28 +0,0 @@ -import unittest -import os -import filecmp - -from quatradis.essentiality.prepare_plot_files import PrepareInputFiles - -data_dir = os.path.join('data', 'tisp', 'prepareinputfiles') -data_expand_genes_dir = os.path.join('data', 'embl', 'expandgenes') - - -class TestPrepareInputFiles(unittest.TestCase): - - def test_small_valid_file(self): - p = PrepareInputFiles(os.path.join(data_dir, 'valid'), 1) - - self.assertTrue(p.create_all_files()) - self.assertTrue(os.path.exists(p.forward_plot_filename)) - self.assertTrue(os.path.exists(p.reverse_plot_filename)) - self.assertTrue(os.path.exists(p.combined_plot_filename)) - - self.assertTrue(filecmp.cmp(os.path.join(data_dir, 'expected_forward_plot_filename'), p.forward_plot_filename)) - self.assertTrue(filecmp.cmp(os.path.join(data_dir, 'expected_reverse_plot_filename'), p.reverse_plot_filename)) - self.assertTrue( - filecmp.cmp(os.path.join(data_dir, 'expected_combined_plot_filename'), p.combined_plot_filename)) - - os.remove(p.forward_plot_filename) - os.remove(p.reverse_plot_filename) - os.remove(p.combined_plot_filename) diff --git a/tests/scripts/comparison_test.sh b/tests/scripts/comparison_test.sh index f41e9c5..bc2168e 100755 --- a/tests/scripts/comparison_test.sh +++ b/tests/scripts/comparison_test.sh @@ -4,37 +4,29 @@ set -e # This script assumes it is run from project root dir +DATA_DIR=tests/data # Sanity test help messages echo -n "Checking 'tradis compare' help messages ... " ./tradis compare --help > /dev/null ./tradis compare figures --help > /dev/null ./tradis compare presence_absence --help > /dev/null -./tradis compare analyse --help > /dev/null ./tradis compare logfc_plot --help > /dev/null ./tradis compare gene_report --help > /dev/null +./tradis compare split --help > /dev/null +./tradis compare essentiality --help > /dev/null +./tradis compare essentiality_analysis --help > /dev/null +./tradis compare prepare_embl --help > /dev/null echo "ok" echo -n "Checking 'tradis compare presence_abscence' ... " -DATA=data/presence_absence_data -./tradis compare presence_absence \ - $DATA/reference_BW25113.embl \ - $DATA/gene_report_0008mgL.csv $DATA/gene_report_0015mgL.csv \ - $DATA/gene_report_003mgL.csv $DATA/gene_report_006mgL.csv \ - $DATA/gene_report_0125mgL.csv $DATA/gene_report_025mgL.csv \ - $DATA/gene_report_05mgL.csv $DATA/gene_report_1mgL.csv > /dev/null 2>&1 -rm -r output +PA_DATA=$DATA_DIR/comparison/presenceabsence +./tradis compare presence_absence -o $PA_DATA/output \ + $PA_DATA/reference.embl $PA_DATA/ctrl.csv $PA_DATA/gent1.csv $PA_DATA/gent5.csv $PA_DATA/gent25.csv> /dev/null 2>&1 +cmp $PA_DATA/expected_logfc.csv $PA_DATA/output/all_logfc.csv +rm -r $PA_DATA/output echo "ok" -#echo -n "Checking 'tradis compare analyse' ... " -#DATA=data/comparative_analysis_data -#./tradis compare analyse -v -a \ -# $DATA/reference_BW25113_short.embl \ -# $DATA/025mgLTricRep1.insert_site_plot_short.gz \ -# $DATA/controlLBrep1.insert_site_plot_short.gz > /dev/null 2>&1 -#rm -r output -#echo "ok" - #echo -n "Checking 'tradis compare logfc_plot' ... " #DATA=data/comparative_analysis_data && \ #./tradis compare logfc_plot -v -a \ @@ -49,4 +41,25 @@ echo "ok" #./tradis compare gene_report -v \ # $DATA/analyse $DATA/annotation.embl > /dev/null 2>&1 && \ # rm -r output -#echo "ok" \ No newline at end of file +#echo "ok" + +echo -n "Checking 'tradis compare essentiality' ... " +ESS_DATA_DIR=$DATA_DIR/comparison/essentiality +./tradis compare essentiality $ESS_DATA_DIR/combined.count.tsv +ESS_OUT=$ESS_DATA_DIR/combined.count.tsv.all.csv +if [ ! -f "$ESS_OUT" ]; then + echo "tradis compare essentiality test failed. $ESS_OUT does not exist." + exit 1 +fi +rm $ESS_DATA_DIR/combined.count.tsv.* +echo "ok" + +echo -n "Checking 'tradis compare prepare_embl' ... " +EMBL_DATA_DIR=$DATA_DIR/embl +./tradis compare prepare_embl --output valid_prepared.embl --minimum_threshold=1 --window_size=4 --window_interval=2 \ + --prime_feature_size=100 $EMBL_DATA_DIR/prepareinputfiles/valid +rm valid_prepared.embl +./tradis compare prepare_embl --output valid_prepared.embl --minimum_threshold=1 --window_size=4 --window_interval=2 \ + --prime_feature_size=100 --emblfile=$EMBL_DATA_DIR/expandgenes/one_gene $EMBL_DATA_DIR/prepareinputfiles/valid +rm valid_prepared.embl +echo "ok" \ No newline at end of file diff --git a/tests/scripts/pipeline_test.sh b/tests/scripts/pipeline_test.sh index 48ec4c0..519bb4a 100755 --- a/tests/scripts/pipeline_test.sh +++ b/tests/scripts/pipeline_test.sh @@ -4,7 +4,7 @@ set -e # This script assumes it is run from project root dir -ESSENTIALITY_DATA_DIR=tests/data/essentiality/input +PIPELINE_DATA_DIR=tests/data/pipeline/input MAPPER_DATA_DIR=tests/data/util/mapper # Sanity test help messages @@ -20,6 +20,6 @@ rm -f $MAPPER_DATA_DIR/smallref.fa.* && rm -r temp_test .snakemake echo "ok" echo -n "Checking 'tradis pipeline compare' ... " -./tradis pipeline compare --output_dir temp_test --annotations $ESSENTIALITY_DATA_DIR/annotation.embl --condition_files $ESSENTIALITY_DATA_DIR/small_case.insert_site_plot.gz $ESSENTIALITY_DATA_DIR/small_case_2.insert_site_plot.gz --control_files $ESSENTIALITY_DATA_DIR/small_control.insert_site_plot.gz $ESSENTIALITY_DATA_DIR/small_control_high_insertions.insert_site_plot.gz > /dev/null 2>&1 +./tradis pipeline compare --output_dir temp_test --annotations $PIPELINE_DATA_DIR/annotation.embl --condition_files $PIPELINE_DATA_DIR/small_case.insert_site_plot.gz $PIPELINE_DATA_DIR/small_case_2.insert_site_plot.gz --control_files $PIPELINE_DATA_DIR/small_control.insert_site_plot.gz $PIPELINE_DATA_DIR/small_control_high_insertions.insert_site_plot.gz > /dev/null 2>&1 rm -r temp_test .snakemake echo "ok" \ No newline at end of file diff --git a/tests/scripts/utils_test.sh b/tests/scripts/utils_test.sh index c09b2e5..be2fd67 100755 --- a/tests/scripts/utils_test.sh +++ b/tests/scripts/utils_test.sh @@ -6,8 +6,6 @@ set -e # This script assumes it is run from project root dir DATA_DIR=tests/data MAPPER_DATA_DIR=$DATA_DIR/util/mapper -EMBL_DATA_DIR=$DATA_DIR/embl -ESS_DATA_DIR=$DATA_DIR/essentiality/input # Sanity test help messages echo -n "Checking 'tradis utils' help messages ... " @@ -15,9 +13,8 @@ echo -n "Checking 'tradis utils' help messages ... " ./tradis utils index --help > /dev/null ./tradis utils annotation --help > /dev/null ./tradis utils artemis_project --help > /dev/null -./tradis utils gene_reports --help > /dev/null -./tradis utils prepare_embl --help > /dev/null -./tradis utils essentiality --help > /dev/null +./tradis utils extract_names --help > /dev/null +./tradis utils tags --help > /dev/null echo "ok" echo -n "Checking 'tradis utils index' ... " @@ -29,16 +26,4 @@ rm testsmaltref.* rm testminimapref echo "ok" -echo -n "Checking 'tradis utils prepare_embl' ... " -./tradis utils prepare_embl --output valid_prepared.embl --minimum_threshold=1 --window_size=4 --window_interval=2 \ - --prime_feature_size=100 $EMBL_DATA_DIR/prepareinputfiles/valid -rm valid_prepared.embl -./tradis utils prepare_embl --output valid_prepared.embl --minimum_threshold=1 --window_size=4 --window_interval=2 \ - --prime_feature_size=100 --emblfile=$EMBL_DATA_DIR/expandgenes/one_gene $EMBL_DATA_DIR/prepareinputfiles/valid -rm valid_prepared.embl -echo "ok" -echo -n "Checking 'tradis utils essentiality' ... " -./tradis utils essentiality --output_dir=output_essential --minimum_threshold=1 $ESS_DATA_DIR/small_case.insert_site_plot.gz $ESS_DATA_DIR/annotation.embl -rm -r output_essential -echo "ok"