From c19e70352c7112d9834bff6ab71932320a23a11b Mon Sep 17 00:00:00 2001 From: FarnazH Date: Mon, 25 Dec 2023 00:01:06 +0000 Subject: [PATCH] [create-pull-request] automated change --- _cite/.cache/cache.db | Bin 45056 -> 49152 bytes _data/citations.yaml | 92 ++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 92 insertions(+) diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 59ea8e4b184ed5f3e6a954776511c890dc515fd3..078c071dbc1219f75db276e89014f77661295933 100644 GIT binary patch delta 4609 zcmcgwYiu0V72ff9AGX&!ek8W@a;^z^Kv;Wc{fZ%wIF6lU9Y3^dB`6XscXzKn6VJ}9 z=V8Y#(JnDbNHc-hvqS_!Y-mYE!92RZTJa-wTd75g+Fw-As-+cDN@-P5wc$rqwdc;p zUONqy+KR5MojqsHeSGKf-E*D!xG0lhFK%#_IUEk}4BEq#z5B!s&XOy3=fsN3+_syJ z3g4?v&guKE?}l&D_kr)v+y}l_xgT*0T$Ve*J8L zG$qDIB@#`kimt>J$ysM^w>CGeZ{Ei8CEA!I>LjX7%5gzeWW~^G&8@7z__jWo#Hpwz zPLX1mew}%*B{gkWzlCioy8S+m;{uEZ1LRn1-ebMeR9n@+HZXBRlA@BB6!p^W=4R{t zrtRMeeClKBt=~V=2GAPz)TB3aY(r52nQPNJwzcSP`*rQ8W%>M@q$o#+MZiK=bZw{l ze+A&$wwCoT>6Zbxw$`!DOWNa#QKrgRiYAo=aouZue@{)vmKC#MLsz2XIBpn8*FAKf z1w5_>C%B@By9M74FZVa@R<3gIr`+~3H^`+74UX6Qg`@nq?}qmaZjZ0lH^Z^z{_>A} zk@A=Wb^+)cn4K@aX zjr^|0mNtG@b94XMM)$+TPl82%b{FHK7S`OQO2%pJjka2B)ZfJi8hO64wJp%m+6vZe zTe0k6GS26>(Y?aQbSJTF#1!4EODN)l)I8A9+$3YQX=D^9_`t59rAB8rdO70Y{=(hl zKH_e0*SQ>bjl0a5T$)okl0#2)b7?Q@W;#Di|6)))IPYB&2L8bQwQN~UNfSa(V1 zhq2S2jl8*Fhv45LNG&6X@fQmSV*GOj1RxX;fKWgXt#c`Ik&4d%nHR{cfH2D*PLfGp(rorSGsccxkn%EQ>5;3MH&x3h&s^(iTQCV zg@zRs#RaV5xK31YN|Z+sB@`mc8ZtC0CKZW5onRFa7;WgHA|os(P)eATlo29Zzj+q@ z?=U_;z1I5Usf~A{tDWAwE|}GX5Jh7a1?ca-{O@4U8ki2aTbeuC11-(D@0|&ixEN;E z!OXrp^9)nZ<|x7*|JFpgVKS|_8^^^i?=ES9orNiK$ZTG(V6FZrFe7vY!~CrFeLBuUGI;C=YR(j=T5C?#PXVwi-tIvG*H zl15Mi1q-22oY^@o<O)<31)3FnC$l@i?O*b? z@)<*@>KCf*aIAnmFt=`{7tFbEJDnsJ9P_laH+KZv zf&ptdv&H$;Q;Q9DeOT8rKJQBYgQ}=qt(ZIIU#*}Ov1j&$<%+N;D|k9TH&jF_s!aA-_a zlEixD{O12=&-wJPUk#*o`hFiDC}cd((~L(gEkVAmt+^vB91)Hh*q}kWUG1N`$G4uN zykdQJRkhx@P>SmQ^tpS98q}%X*4ct1^2Xo@>*1>t);G>?vIqU+wAG+?kzLG~+3zd&zw*V-?i_$(5ADm&@_Gqiktp>Kv+X`4Yr3I{5ENC*K9=2)HoYMnS7K;C>QxmfYx+WpMp6PALi-GL6gE;G!AXNi z=ospPn#`JIhZPi2fLFCqF>9{r!J-D46+xZSn1K@sMM;9%*F6r2HHh}9M3#vPvvli% ztvRYl!!T>*5mAm4G&q35Mog56uEVH`hyXKS5p@D%i@Ks^O|F+n5|L3K3Pa&5us#=3 z1R3o^^r7igQx*a)kwp~7xvag}gEjf1 zkOqVv>NG&~Xv|&B-e90%kuLR63pgKb3;UUub3eXxlVOUjcV5^F7WB}h7WDY1b5J?w zy8IqfIem;>nILCeD-)y{`kGapkUiEIo3Q7ypY#kKo1h7zLW10rUOAwU9$!J>uTBiJ zGAz*?KHNG5VLJD4kA zU30W?v0Z9E^NkF3=`ng+fDaIkStKU1%k3t(`Hp_G;Oqa#X_hV=X9S$JvP4bqkeEc> zXwcBXb5KgXWE>9C2t+4EORKtHgu4^gP#+x4vOcAZNCp(9U0|}lI6t_u#Mb8Pb#eZV zf=!onDJq#nUCIfl!w@=%RTU&`42whpKUExn6*SZ>X;_UZ#;5=RjX=*OpaVq6^8^gh zpnlOoGLnD_=RyWt4CTf7At+sWe}0HP+JU5Ul{K2RB2dQ>D6kZ`clVIz)V z?FBNBv+S9TyD^?I++E#hAjd{UHTzXqtk06j=v;fpz{&8i580G&Jn%K_#-B8i%2JK`WF@b3q@7__2d9CTgOP?_=r1QlXW%#xH5 z1ABp3V=vz4Z6vywAC%JhsxsRsiO{LY1DI1H46zgEd7sRP!FB#jXQk#S%ZLZCWCO36< zlLlQUjtgyatXnNzJBM*EjBdMQ&LXAjhwa0#gF*+67S=Db?u$qZ`yhio&&^`Wwm|OT z|KxuUzjMxWlFQ-TZ<=%UIuplnRr$tlWcn(&P9Rg=sfg7VNb@gTwXleV--T6SUAQUi zkR9@)ut>foACfafB(IVV(m;@cYDNSov|3RuEVZ@`(PY*1yZ13#umgot*`#E&$Thgh zkdZ=?n32SA#wj=8b`%jaCjz5l_(VJ!7)__7R5%saIpun2_0+lQaGNnR78j*xATyB+ z$I_`}Dw}c0E(m#C$O&(G>gycXqxr`Z4uxaXDV~ZpayHoxUwRx?8*W13Y&;%_iwRLO zwaEKm!_z{{vK1dNNTK5aF&T-z`L%aTKvwvp>kzG@soQ>fAHhwU3M*gZ!tI*>W91th zxUKX{LQDpZiL?$zz}K_$|HAWiHta5+ClaC2lH29P2g|1;sccm`8HxuIsYsM}!uQ?w z4##8JLRl#lI2j6OvkBhLI4kw>HXUs}BD-t=Rb*GG>3Kl%enXv!XLB}Mik#pgJ(eQT zTJ8$7!VkiWu;2d-c>TOG=)Y>tU%3i@9%)BLa1VDP1B?uNksdA%cOjmhJPCgdyLg>X z`?dkW_TqD(3Ao|hl3Dx8Oe==oh+I=r%Gq?5JKUvTTT^e3O1h4I20kYBLD{lWn?+Myr5S!jkS=yyA}cl5G3oQ{U1 zXv7_%&$-FDnD#wBeX0{?P$s4+Ni~!52pSMvzBmq3=Q}`JNJHy%ez#L2~Bdcyim+*sY&oc+TcB(^-C9P~-%b~vk3$z30 diff --git a/_data/citations.yaml b/_data/citations.yaml index 0cc985a..db4e4b0 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,5 +1,75 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY +- id: doi:10.1093/nar/gkad1082 + title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\ + \ genes\_and diseases across species" + authors: + - Tim E Putman + - Kevin Schaper + - Nicolas Matentzoglu + - "Vincent\_P Rubinetti" + - "Faisal\_S Alquaddoomi" + - Corey Cox + - J Harry Caufield + - Glass Elsarboukh + - Sarah Gehrke + - Harshad Hegde + - "Justin\_T Reese" + - Ian Braun + - "Richard\_M Bruskiewich" + - Luca Cappelletti + - Seth Carbon + - "Anita\_R Caron" + - "Lauren\_E Chan" + - "Christopher\_G Chute" + - "Katherina\_G Cortes" + - "Vin\xEDcius De\_Souza" + - Tommaso Fontana + - "Nomi\_L Harris" + - "Emily\_L Hartley" + - Eric Hurwitz + - "Julius\_O B Jacobsen" + - Madan Krishnamurthy + - "Bryan\_J Laraway" + - "James\_A McLaughlin" + - "Julie\_A McMurry" + - "Sierra\_A T Moxon" + - "Kathleen\_R Mullen" + - "Shawn\_T O\u2019Neil" + - "Kent\_A Shefchek" + - Ray Stefancsik + - Sabrina Toro + - "Nicole\_A Vasilevsky" + - "Ramona\_L Walls" + - "Patricia\_L Whetzel" + - David Osumi-Sutherland + - Damian Smedley + - "Peter\_N Robinson" + - "Christopher\_J Mungall" + - "Melissa\_A Haendel" + - "Monica\_C Munoz-Torres" + publisher: Nucleic Acids Research + date: '2023-11-24' + link: https://doi.org/gs6kmr + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2023.10.11.560955 + title: Integration of 168,000 samples reveals global patterns of the human gut microbiome + authors: + - Richard J. Abdill + - Samantha P. Graham + - Vincent Rubinetti + - Frank W. Albert + - Casey S. Greene + - Sean Davis + - Ran Blekhman + publisher: Cold Spring Harbor Laboratory + date: '2023-10-11' + link: https://doi.org/gsvf5z + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1093/nar/gkad289 title: 'MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes' @@ -64,6 +134,28 @@ orcid: 0000-0002-4655-3773 plugin: orcid.py file: orcid.yaml +- id: doi:10.1101/2022.02.18.461833 + title: 'MolEvolvR: A web-app for characterizing proteins using molecular evolution + and phylogeny' + authors: + - Jacob D Krol + - Joseph T Burke + - Samuel Z Chen + - Lo Sosinski + - Faisal S Alquaddoomi + - Evan P Brenner + - Ethan P Wolfe + - Vince P Rubinetti + - Shaddai Amolitos + - Kellen M Reason + - John B Johnston + - Janani Ravi + publisher: Cold Spring Harbor Laboratory + date: '2022-02-22' + link: https://doi.org/gstx7j + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1186/s13059-020-02021-3 title: Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations