diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 59ea8e4..35df281 100644 Binary files a/_cite/.cache/cache.db and b/_cite/.cache/cache.db differ diff --git a/_data/citations.yaml b/_data/citations.yaml index 0cc985a..0e483e3 100644 --- a/_data/citations.yaml +++ b/_data/citations.yaml @@ -1,5 +1,75 @@ # DO NOT EDIT, GENERATED AUTOMATICALLY +- id: doi:10.1093/nar/gkad1082 + title: "The Monarch Initiative in 2024: an analytic platform integrating phenotypes,\ + \ genes\_and diseases across species" + authors: + - Tim E Putman + - Kevin Schaper + - Nicolas Matentzoglu + - "Vincent\_P Rubinetti" + - "Faisal\_S Alquaddoomi" + - Corey Cox + - J Harry Caufield + - Glass Elsarboukh + - Sarah Gehrke + - Harshad Hegde + - "Justin\_T Reese" + - Ian Braun + - "Richard\_M Bruskiewich" + - Luca Cappelletti + - Seth Carbon + - "Anita\_R Caron" + - "Lauren\_E Chan" + - "Christopher\_G Chute" + - "Katherina\_G Cortes" + - "Vin\xEDcius De\_Souza" + - Tommaso Fontana + - "Nomi\_L Harris" + - "Emily\_L Hartley" + - Eric Hurwitz + - "Julius\_O B Jacobsen" + - Madan Krishnamurthy + - "Bryan\_J Laraway" + - "James\_A McLaughlin" + - "Julie\_A McMurry" + - "Sierra\_A T Moxon" + - "Kathleen\_R Mullen" + - "Shawn\_T O\u2019Neil" + - "Kent\_A Shefchek" + - Ray Stefancsik + - Sabrina Toro + - "Nicole\_A Vasilevsky" + - "Ramona\_L Walls" + - "Patricia\_L Whetzel" + - David Osumi-Sutherland + - Damian Smedley + - "Peter\_N Robinson" + - "Christopher\_J Mungall" + - "Melissa\_A Haendel" + - "Monica\_C Munoz-Torres" + publisher: Nucleic Acids Research + date: '2023-11-24' + link: https://doi.org/gs6kmr + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2023.10.11.560955 + title: Integration of 168,000 samples reveals global patterns of the human gut microbiome + authors: + - Richard J. Abdill + - Samantha P. Graham + - Vincent Rubinetti + - Frank W. Albert + - Casey S. Greene + - Sean Davis + - Ran Blekhman + publisher: Cold Spring Harbor Laboratory + date: '2023-10-11' + link: https://doi.org/gsvf5z + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1093/nar/gkad289 title: 'MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes' @@ -64,6 +134,28 @@ orcid: 0000-0002-4655-3773 plugin: orcid.py file: orcid.yaml +- id: doi:10.1101/2022.02.18.461833 + title: 'MolEvolvR: A web-app for characterizing proteins using molecular evolution + and phylogeny' + authors: + - Jacob D Krol + - Joseph T Burke + - Samuel Z Chen + - Lo M Sosinski + - Faisal S Alquaddoomi + - Evan P Brenner + - Ethan P Wolfe + - Vincent P Rubinetti + - Shaddai Amolitos + - Kellen M Reason + - John B Johnston + - Janani Ravi + publisher: Cold Spring Harbor Laboratory + date: '2022-02-22' + link: https://doi.org/gstx7j + orcid: 0000-0002-4655-3773 + plugin: orcid.py + file: orcid.yaml - id: doi:10.1186/s13059-020-02021-3 title: Compressing gene expression data using multiple latent space dimensionalities learns complementary biological representations