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markers

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README.md
README.md
 
 
metadata.tsv
metadata.tsv
 
 
nj.nwk
nj.nwk
 
 
pcoa.qzv
pcoa.qzv
 
 
pcoa1-10.txt.bz2
pcoa1-10.txt.bz2
 
 
profile.tsv.bz2
profile.tsv.bz2
 
 

README.md

Markers

The 400 global marker genes for inferring phylogenetic relationships of bacterial and archaeal genomes. Originally implemented in PhyloPhlAn.

  • metadata.tsv: Annotations of the markers.
  • profile.tsv.bz2: Presence (1) and absence (0) of the marker genes in the selected genomes.
  • nj.nwk: Neighbor joining (NJ) tree based on the Jaccard distance matrix inferred from the profile.
  • pcoa1-10.txt: Principal coordinate analysis (PCoA) of the genomes based on the Jaccard distance matrix. To save disk space, only coordinates of the top 10 axes were included. This file can be directly imported as type PCoAResult by QIIME 2.
  • pcoa.qzv: Interactive visualization of the PCoA result. This file was generated using QIIME 2. To display this file, navigate to https://view.qiime2.org/, and drag & drop the file as indicated.