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High number of HGTs for one species compared to other species #81

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kcamnairb opened this issue Jul 27, 2021 · 0 comments
Open

High number of HGTs for one species compared to other species #81

kcamnairb opened this issue Jul 27, 2021 · 0 comments

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@kcamnairb
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Hi Qiyun,

I've used HGTector to look for HGTs in 16 fungal species using the pre-built default database. I was surprised that one of the species, Byssochlamys AF001, had so many more HGTs than any of the others. I copied a table below. Does this seem like it could be real to you or is this some kind of artifact? Could it be caused by not having enough closely related organisms in the database or maybe bad gene predictions from this species?

Thanks,
Brian

  # HGTs
Byssochlamys_sp AF001 1156
A_parvisclerotigenus 319
A_parasiticus 290
A_sojae 282
A_arachidicola 272
A_flavus_3357 269
A_oryzae_RIB40 259
A_persii 259
A_minisclerotigenes 241
A_flavus_70 238
A_korhogoensis 159
A_bombycis 133
A_nomius 122
A_westerdijkiae 108
A_steynii 98
A_sclerotiorum 79
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