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ImportError: dlopen: cannot load any more object with static TLS #107

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jpca21 opened this issue Oct 13, 2022 · 0 comments
Open

ImportError: dlopen: cannot load any more object with static TLS #107

jpca21 opened this issue Oct 13, 2022 · 0 comments

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@jpca21
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jpca21 commented Oct 13, 2022

Hello,

I installed hgtector using the "Native installation" option and a conda environment. However, when I run this program, I just received the following error, and I do not know what is this about:

$ hgtector
Traceback (most recent call last):
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/bin/hgtector", line 4, in <module>
    __import__('pkg_resources').run_script('hgtector==2.0b3', 'hgtector')
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/pkg_resources/__init__.py", line 656, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/pkg_resources/__init__.py", line 1453, in run_script
    exec(code, namespace, namespace)
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/hgtector-2.0b3-py3.10.egg/EGG-INFO/scripts/hgtector", line 96, in <module>
    main()
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/hgtector-2.0b3-py3.10.egg/EGG-INFO/scripts/hgtector", line 25, in main
    module = getattr(import_module(
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 883, in exec_module
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/hgtector-2.0b3-py3.10.egg/hgtector/analyze.py", line 22, in <module>
    from sklearn.preprocessing import StandardScaler
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/sklearn/__init__.py", line 83, in <module>
    from .utils._show_versions import show_versions
  File "/data_1/jcardenas/anaconda3/envs/hgtector-dev/lib/python3.10/site-packages/sklearn/utils/_show_versions.py", line 12, in <module>
    from ._openmp_helpers import _openmp_parallelism_enabled
ImportError: dlopen: cannot load any more object with static TLS

I include the list (conda list --explicit) from the current hgtector-dev environment I utilized:

# This file may be used to create an environment using:
# $ conda create --name <env> --file <this file>
# platform: linux-64
@EXPLICIT
https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.9.24-ha878542_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.36.1-hea4e1c9_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-12.1.0-hdcd56e2_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-12.1.0-ha89aaad_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/mysql-common-8.0.25-ha770c72_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/tzdata-2022e-h191b570_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-12.1.0-h69a702a_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgomp-12.1.0-h8d9b700_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-12.1.0-h8d9b700_16.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.3.2-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.18.1-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/expat-2.4.9-h27087fc_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.1-h36c2ea0_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/icu-67.1-he1b5a44_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/jpeg-9e-h166bdaf_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.0.9-h166bdaf_7.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-h516909a_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.21-pthreads_h78a6416_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libunistring-0.9.10-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libuuid-2.32.1-h7f98852_1000.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libwebp-base-1.2.0-h7f98852_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.12-h166bdaf_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.3-h9c3ff4c_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.3-h27087fc_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/nspr-4.32-h9c3ff4c_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/openssl-1.1.1q-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pcre-8.45-h9c3ff4c_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxau-1.0.9-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/xorg-libxdmcp-1.1.3-h7f98852_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/xz-5.2.6-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-16_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libbrotlidec-1.0.9-h166bdaf_7.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libbrotlienc-1.0.9-h166bdaf_7.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libevent-2.1.10-h9b69904_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libidn2-2.3.3-h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libllvm11-11.1.0-he0ac6c6_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.47.0-hdcd2b5c_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.38-h753d276_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libsqlite-3.39.4-h753d276_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libssh2-1.10.0-haa6b8db_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.13-h7f98852_1004.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pcre2-10.37-hc3806b6_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-5.32.1-2_h7f98852_perl5.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/readline-8.1.2-h0f457ee_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/tk-8.6.12-h27826a3_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/zlib-1.2.12-h166bdaf_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/brotli-bin-1.0.9-h166bdaf_7.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/freetype-2.12.1-hca18f0e_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/krb5-1.19.3-h3790be6_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-16_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libclang-11.1.0-default_ha53f305_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libglib-2.74.0-h7a41b64_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/liblapack-3.9.0-16_linux64_openblas.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.9.10-h68273f3_2.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/perl-common-sense-3.75-pl5321hd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-compress-raw-bzip2-2.201-pl5321h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-compress-raw-zlib-2.202-pl5321h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/perl-exporter-5.74-pl5321hd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/perl-exporter-tiny-1.002002-pl5321hd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/perl-extutils-makemaker-7.64-pl5321hd8ed1ab_0.tar.bz2
https://conda.anaconda.org/bioconda/noarch/perl-io-zlib-1.11-pl5321hdfd78af_0.tar.bz2
https://conda.anaconda.org/bioconda/linux-64/perl-list-moreutils-xs-0.430-pl5321hec16e2b_1.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/perl-parent-0.238-pl5321hd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-scalar-list-utils-1.63-pl5321h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-storable-3.15-pl5321h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.39.4-h4ff8645_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/wget-1.20.3-ha56f1ee_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/zstd-1.4.9-ha95c52a_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/boost-cpp-1.70.0-h7b93d67_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/brotli-1.0.9-h166bdaf_7.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/dbus-1.13.6-h5008d03_3.tar.bz2
https://conda.anaconda.org/bioconda/linux-64/entrez-direct-16.2-he881be0_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.0-hc2a2eb6_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.74.0-h6239696_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/gstreamer-1.18.5-h9f60fe5_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.85.0-h7bff187_0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/libpq-12.9-h16c4e8d_3.conda
https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.2.0-hbd63e13_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libxkbcommon-1.0.3-he3ba5ed_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/mysql-libs-8.0.25-h935591d_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/nss-3.78-h2350873_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/perl-carp-1.50-pl5321hd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-encode-3.19-pl5321h166bdaf_0.tar.bz2
https://conda.anaconda.org/bioconda/noarch/perl-list-moreutils-0.430-pl5321hdfd78af_0.tar.bz2
https://conda.anaconda.org/bioconda/noarch/perl-types-serialiser-1.01-pl5321hdfd78af_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/python-3.10.0-h62f1059_3_cpython.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/certifi-2022.9.24-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/curl-7.85.0-h7bff187_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/cycler-0.11.0-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/bioconda/linux-64/diamond-0.9.36-h56fc30b_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/glib-2.74.0-h6239696_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.12-hddcbb42_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/libwebp-1.2.0-h3452ae3_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/munkres-1.1.4-pyh9f0ad1d_0.tar.bz2
https://conda.anaconda.org/bioconda/linux-64/perl-io-compress-2.201-pl5321h87f3376_0.tar.bz2
https://conda.anaconda.org/bioconda/linux-64/perl-json-xs-2.34-pl5321h9f5acd7_5.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/perl-pathtools-3.75-pl5321h166bdaf_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/pyparsing-3.0.9-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-2_cp310.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/pytz-2022.4-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/threadpoolctl-3.1.0-pyh8a188c0_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/wheel-0.37.1-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/gst-plugins-base-1.14.5-h0935bb2_2.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/kiwisolver-1.4.4-py310hbf28c38_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/numpy-1.23.3-py310h53a5b5f_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/packaging-21.3-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/bioconda/noarch/perl-archive-tar-2.40-pl5321hdfd78af_0.tar.bz2
https://conda.anaconda.org/bioconda/noarch/perl-json-4.09-pl5321hdfd78af_0.tar.bz2
https://repo.anaconda.com/pkgs/main/linux-64/pillow-9.2.0-py310hace64e9_1.conda
https://conda.anaconda.org/conda-forge/linux-64/pyqt5-sip-4.19.18-py310h122e73d_8.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/python-dateutil-2.8.2-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pyyaml-6.0-py310h5764c6d_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/setuptools-59.8.0-py310hff52083_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/tornado-6.2-py310h5764c6d_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/unicodedata2-14.0.0-py310h5764c6d_1.tar.bz2
https://conda.anaconda.org/bioconda/linux-64/blast-2.12.0-hf3cf87c_4.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.37.4-py310h5764c6d_0.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/joblib-1.2.0-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pandas-1.3.4-py310hb5077e9_1.tar.bz2
https://conda.anaconda.org/conda-forge/noarch/pip-22.2.2-pyhd8ed1ab_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/qt-5.12.9-h763d07f_1.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/scipy-1.9.1-py310hdfbd76f_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.5.0-py310h23f4a51_0.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pyqt-impl-5.12.3-py310h1f8e252_8.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.0.1-py310h1246948_3.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pyqtchart-5.12-py310hfcd6d55_8.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pyqtwebengine-5.12.1-py310hfcd6d55_8.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/pyqt-5.12.3-py310hff52083_8.tar.bz2
https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.5.0-py310hff52083_0.tar.bz2

I am using a server with CentOS release 6.10 (Final).

Thanks in advance for your help.

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