DESCRIPTION

Package: MPTevol
Title: Clonal Evolutionary History and Metastatic Routines Analysis for
    Multiple Primary Tumors
Version: 0.1.0
Authors@R: c(
    person("Qinjian", "Chen", , "chenqingjian2010@163.com", role = c("aut", "cre"),
           comment = c(ORCID = "xxx")),
    person("Shixiang", "Wang", , "w_shixiang@163.com", role = "aut",
           comment = c(ORCID = "0000-0001-9855-7357"))
  )
Description: Provides a practical computation framework for dissecting the
    evolution of multiple primary tumors (MPT), reducing analysis
    complexity with modular design.
License: GPL (>= 3)
Depends: 
    R (>= 4.0)
Imports: 
    ape,
    clonevol,
    CNAqc,
    ComplexHeatmap,
    data.table,
    dndscv,
    dplyr,
    GenomicRanges,
    ggplot2,
    ggrepel,
    ggtree,
    gtools,
    magrittr,
    MesKit,
    methods,
    phangorn,
    pio,
    purrr,
    stringr,
    tidyr,
    treeio
Suggests: 
    DT,
    easypar,
    ggpubr,
    IRanges,
    knitr,
    latex2exp,
    RColorBrewer,
    rmarkdown,
    tibble
VignetteBuilder: 
    knitr
Remotes: 
    github::caravagnalab/CNAqc,
    github::hdng/clonevol,
    github::im3sanger/dndscv
biocViews:
Encoding: UTF-8
Roxygen: list(markdown = TRUE, roclets = c("collate", "namespace", "rd"))
RoxygenNote: 7.1.2
URL: https://qingjian1991.github.io/MPTevol/