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"/home/sep/tools/miniconda3/envs/pyxu/lib/python3.12/site-packages/matplotlib/sphinxext/plot_directive.py", line 552, in _run_code - exec(code, ns) - File "", line 14, in - File "/home/sep/Documents/Repositories/pyxu/src/pyxu/abc/operator.py", line 337, in __mul__ - return arithmetic.ChainRule(lhs=self, rhs=other).op() - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - File "/home/sep/Documents/Repositories/pyxu/src/pyxu/abc/arithmetic.py", line 991, in __init__ - assert lhs.dim_shape == rhs.codim_shape, "Operator dimensions are not compatible." - ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -AssertionError: Operator dimensions are not compatible. -/home/sep/Documents/Repositories/pyxu/src/pyxu/operator/ufunc.py:docstring of pyxu.operator.ufunc.Gaussian:1: WARNING: duplicate object description of pyxu.operator.Gaussian, other instance in api/operator/linop, use :no-index: for one of them -/home/sep/Documents/Repositories/pyxu/src/pyxu/opt/solver/pds.py:docstring of pyxu.opt.solver.pds.ADMM:152: WARNING: Exception occurred in plotting opt-solver-3 - from /home/sep/Documents/Repositories/pyxu/doc/api/opt.solver.rst: -Traceback (most recent call last): - File "/home/sep/tools/miniconda3/envs/pyxu/lib/python3.12/site-packages/matplotlib/sphinxext/plot_directive.py", line 552, in _run_code - exec(code, ns) - File "", line 29, in -TypeError: SquaredL2Norm.__init__() got an unexpected keyword argument 'dim' -/home/sep/Documents/Repositories/pyxu/doc/examples/GALLERY_HEADER.rst: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/examples/contributing.ipynb: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/examples/deblur.ipynb: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/examples/images/GALLERY_HEADER.rst: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/examples/stencils.ipynb: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/examples/xray.ipynb: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/fair/plugins_preview/TokamakRec.rst: WARNING: document isn't included in any toctree -/home/sep/Documents/Repositories/pyxu/doc/references.rst:5: WARNING: Citation [ProxAlg] is not referenced. -/home/sep/Documents/Repositories/pyxu/doc/references.rst:6: WARNING: Citation [FirstOrd] is not referenced. -/home/sep/Documents/Repositories/pyxu/doc/references.rst:7: WARNING: Citation [OnKerLearn] is not referenced. -/home/sep/Documents/Repositories/pyxu/doc/references.rst:8: WARNING: Citation [ProxSplit] is not referenced. -/home/sep/Documents/Repositories/pyxu/doc/references.rst:19: WARNING: Citation [P2] is not referenced. -/home/sep/Documents/Repositories/pyxu/doc/references.rst:20: WARNING: Citation [GaussProcesses] is not referenced. -/home/sep/Documents/Repositories/pyxu/doc/references.rst:21: WARNING: Citation [SubGauss] 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Binary files a/_images/sampler-1_00_00.png and b/_images/sampler-1_00_00.png differ diff --git a/_images/sampler-1_01_00.png b/_images/sampler-1_01_00.png index a8b33527..797f2691 100644 Binary files a/_images/sampler-1_01_00.png and b/_images/sampler-1_01_00.png differ diff --git a/_parse_plugins/plugins.db b/_parse_plugins/plugins.db index 4e955638..015a45b1 100644 Binary files a/_parse_plugins/plugins.db and b/_parse_plugins/plugins.db differ diff --git a/_sources/fair/plugins/index.rst b/_sources/fair/plugins/index.rst index 2880edbb..fa666d96 100644 --- a/_sources/fair/plugins/index.rst +++ b/_sources/fair/plugins/index.rst @@ -181,17 +181,17 @@ } -******* -Catalog -******* +********* +Catalogue +********* .. raw:: html -

Catalog

+

Catalogue

-**Total Registered Plugin Packages: 2** +**Total Registered Plugin Packages: 4** .. raw:: html @@ -200,7 +200,7 @@ Catalog Operator - 0 plugins in 0 packages + 5 plugins in 2 packages @@ -237,34 +237,59 @@ Catalog .. raw:: html -

pyxu-eigh

+

pyxu_eigh

-  

+  

+ +

+ + + Math + 1 + + +

+ + + .. grid-item-card:: + + .. raw:: html + +

pyxu_finufft

+ +

+ +  

+ +

- Math - 1 + Operator + 3

@@ -274,11 +299,11 @@ Catalog .. raw:: html -

pyxu-gradient-descent

+

pyxu_gradient_descent

-  

+  

    @@ -289,19 +314,44 @@ Catalog +
+ +

+ + + Solver + 1 + + +

+ + + .. grid-item-card:: + + .. raw:: html + +

pyxu_xrt

+ +

+ +  

+ +

- Solver - 1 + Operator + 2

@@ -314,6 +364,8 @@ Catalog :maxdepth: 1 :hidden: - pyxu-eigh - pyxu-gradient-descent + pyxu_eigh + pyxu_finufft + pyxu_gradient_descent + pyxu_xrt \ No newline at end of file diff --git a/_sources/fair/plugins/pyxu-eigh.rst b/_sources/fair/plugins/pyxu-eigh.rst deleted file mode 100644 index 62152e5c..00000000 --- a/_sources/fair/plugins/pyxu-eigh.rst +++ /dev/null @@ -1,244 +0,0 @@ -.. _plugins-page: - -.. |br| raw:: html - -
- -.. raw:: html - - - - -********* -pyxu-eigh -********* - - -Description -=========== - -.. raw:: html - Pyxu plugin to compute the eigenvectors and eigenvalues of a real symmetric matrix - - - -General information -=================== - -.. raw:: html - - -

- Short description: Pyxu plugin to compute the eigenvectors and eigenvalues of a real symmetric matrix -

- - -

- -

- - -

- Source code: Go to the source code repository -

- - -

- Documentation: No documentation provided by the package author -

- - - -Detailed information -==================== - -.. raw:: html - -

- Author(s): Joan Rue Queralt -

- - -

- Contact: joan.rue.q@gmail.com -

- - -

- Most recent version: 0.1.0 -

-

- Compatibility: - -

- - - -Components contributed -====================== - -.. raw:: html -

- - - Math - 1 - - -

- - - - Math (pyxu.math) - -
    - -
  • eigh - -
- - \ No newline at end of file diff --git a/_sources/fair/plugins/pyxu-gradient-descent.rst b/_sources/fair/plugins/pyxu-gradient-descent.rst deleted file mode 100644 index a8157ad9..00000000 --- a/_sources/fair/plugins/pyxu-gradient-descent.rst +++ /dev/null @@ -1,244 +0,0 @@ -.. _plugins-page: - -.. |br| raw:: html - -
- -.. raw:: html - - - - -********************* -pyxu-gradient-descent -********************* - - -Description -=========== - -.. raw:: html - An accelerated gradient descent optimizer for Pyxu - - - -General information -=================== - -.. raw:: html - - -

- Short description: An accelerated gradient descent optimizer for Pyxu -

- - -

- -

- - -

- Source code: Go to the source code repository -

- - -

- Documentation: No documentation provided by the package author -

- - - -Detailed information -==================== - -.. raw:: html - -

- Author(s): Joan Rue Queralt -

- - -

- Contact: joan.rue.q@gmail.com -

- - -

- Most recent version: 0.1.0 -

-

- Compatibility: - -

- - - -Components contributed -====================== - -.. raw:: html -

- - - Solver - 1 - - -

- - - - Solver (pyxu.solver) - -
    - -
  • GradientDescent - -
- - \ No newline at end of file diff --git a/api/index.html b/api/index.html index fc75f5a3..e1951593 100644 --- a/api/index.html +++ b/api/index.html @@ -1056,7 +1056,7 @@

Filters#<

DoG(dim_shape[, low_sigma, high_sigma, ...])

Alias of DifferenceOfGaussians().

-

Gaussian(dim_shape)

+

Gaussian(dim_shape)

Gaussian, element-wise.

Laplace(dim_shape[, mode, sampling, gpu, dtype])

@@ -1209,7 +1209,7 @@

Element-wise Operato

Exp(dim_shape[, base])

Exponential, element-wise.

-

Gaussian(dim_shape)

+

Gaussian(dim_shape)

Gaussian, element-wise.

LeakyReLU(dim_shape, alpha)

diff --git a/api/operator/linop.html b/api/operator/linop.html index e09aeec4..460b81bd 100644 --- a/api/operator/linop.html +++ b/api/operator/linop.html @@ -2065,7 +2065,7 @@

Filters

See also

-

Gaussian, Sobel, Prewitt, Scharr, StructureTensor

+

Gaussian, Sobel, Prewitt, Scharr, StructureTensor

diff --git a/build/html/WARNINGS.log b/build/html/WARNINGS.log index 7ddce4b0..6b298bca 100644 --- a/build/html/WARNINGS.log +++ b/build/html/WARNINGS.log @@ -4,16 +4,16 @@ Parsed source in `python` block: concatenations: from pyxu.opt.solver import GradientDescent block source: ModuleNotFoundError: No module named 'pyxu.opt.solver.GradientDescent' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:284: WARNING: File not found: 'api/abc.html#pyxu.abc.Operator.expr' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:451: WARNING: File not found: 'api/abc.html#pyxu.abc.LinOp.pinv' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:451: WARNING: File not found: 'api/abc.html#pyxu.abc.LinOp' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:666: WARNING: File not found: 'api/operator/linop.html#pyxu.operator.Gradient' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:668: WARNING: File not found: 'api/abc.html#pyxu.abc.ProxFunc.moreau_envelope' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:677: WARNING: File not found: 'api/operator/func.html#pyxu.operator.PositiveL1Norm' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:686: WARNING: File not found: 'api/operator/func.html#pyxu.operator.SquaredL2Norm' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:687: WARNING: File not found: 'api/abc.html#pyxu.abc.Func.asloss' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:699: WARNING: File not found: 'api/abc.html#pyxu.abc.DiffMap.estimate_diff_lipschitz' -/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:914: WARNING: File not found: 'api/abc.html#pyxu.abc.ProxDiffFunc' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:292: WARNING: File not found: 'api/abc.html#pyxu.abc.Operator.expr' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:459: WARNING: File not found: 'api/abc.html#pyxu.abc.LinOp.pinv' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:459: WARNING: File not found: 'api/abc.html#pyxu.abc.LinOp' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:689: WARNING: File not found: 'api/operator/linop.html#pyxu.operator.Gradient' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:691: WARNING: File not found: 'api/abc.html#pyxu.abc.ProxFunc.moreau_envelope' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:700: WARNING: File not found: 'api/operator/func.html#pyxu.operator.PositiveL1Norm' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:709: WARNING: File not found: 'api/operator/func.html#pyxu.operator.SquaredL2Norm' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:710: WARNING: File not found: 'api/abc.html#pyxu.abc.Operator.argshift' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:722: WARNING: File not found: 'api/abc.html#pyxu.abc.DiffMap.estimate_diff_lipschitz' +/home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/intro/tomo.ipynb:946: WARNING: File not found: 'api/abc.html#pyxu.abc.ProxDiffFunc' /home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/fair/plugins_preview/index.rst:1118: WARNING: toctree contains reference to nonexisting document 'fair/plugins_preview/TokemakRec' /home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/fair/score.rst:29: WARNING: Bullet list ends without a blank line; unexpected unindent. /home/runner/work/pyxu-org.github.io/pyxu-org.github.io/pyxu/doc/guide/algebra.ipynb:32: WARNING: File not found: 'api/abc.html#pyxu.abc.Map.apply' diff --git a/fair/contribute.html b/fair/contribute.html index 0119d27b..8e1e3145 100644 --- a/fair/contribute.html +++ b/fair/contribute.html @@ -424,9 +424,11 @@
  • Contributing to the Pyxu-FAIR
  • Developer Notes
  • Pyxu Score Explained
    • -
  • Catalog
      -
    • pyxu-eigh
      • -
    • pyxu-gradient-descent
      • +
    • Catalogue
    • Plugin Preview Catalog
        diff --git a/fair/dev_notes.html b/fair/dev_notes.html index e7dc12c5..1b932f8f 100644 --- a/fair/dev_notes.html +++ b/fair/dev_notes.html @@ -424,9 +424,11 @@
      • Contributing to the Pyxu-FAIR
      • Developer Notes
      • Pyxu Score Explained
        • -
      • Catalog
          -
        • pyxu-eigh
          • -
        • pyxu-gradient-descent
          • +
        • Catalogue
        • Plugin Preview Catalog
            diff --git a/fair/howto.html b/fair/howto.html index 12dc2d1a..232ec334 100644 --- a/fair/howto.html +++ b/fair/howto.html @@ -237,9 +237,11 @@
          • Contributing to the Pyxu-FAIR
          • Developer Notes
          • Pyxu Score Explained
            • -
          • Catalog
              -
            • pyxu-eigh
              • -
            • pyxu-gradient-descent
              • +
            • Catalogue
            • Plugin Preview Catalog
                diff --git a/fair/index.html b/fair/index.html index 569a272f..c0b99ac7 100644 --- a/fair/index.html +++ b/fair/index.html @@ -424,9 +424,11 @@
              • Contributing to the Pyxu-FAIR
              • Developer Notes
              • Pyxu Score Explained
                • -
              • Catalog
                  -
                • pyxu-eigh
                  • -
                • pyxu-gradient-descent
                  • +
                • Catalogue
                • Plugin Preview Catalog
                    diff --git a/fair/plugins/index.html b/fair/plugins/index.html index 6959314e..74cce00a 100644 --- a/fair/plugins/index.html +++ b/fair/plugins/index.html @@ -8,7 +8,7 @@ - Catalog — Pyxu Documentation + Catalogue — Pyxu Documentation @@ -61,7 +61,7 @@ - + @@ -420,9 +420,11 @@
                  • Contributing to the Pyxu-FAIR
                  • Developer Notes
                  • Pyxu Score Explained
                    • -
                  • Catalog

                    Defining the Smooth Part of the Posterior

                    # Posterior
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\ No newline at end of file
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