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examples/diagnostics_and_criticism/model_averaging.ipynb
The body_fat.csv from pm.get_data("body_fat.csv") is not found.
body_fat.csv
pm.get_data("body_fat.csv")
───────────────────────────────────── Error running examples/diagnostics_and_criticism/model_averaging.ipynb ───────────────────────────────────── --------------------------------------------------------------------------- Exception encountered at "In [4]": --------------------------------------------------------------------------- FileNotFoundError Traceback (most recent call last) Cell In[4], line 2 1 try: ----> 2 d = pd.read_csv(os.path.join("..", "data", "body_fat.csv")) 3 except FileNotFoundError: File ~/micromamba/envs/pymc-examples/lib/python3.11/site-packages/pandas/io/parsers/readers.py:1026, in read_csv(filepath_or_buffer, sep, delimiter, header, names, index_col, usecols, dtype, engine, converters, true_values, false_values, skipinitialspace, skiprows, skipfooter, nrows, na_values, keep_default_na, na_filter, verbose, skip_blank_lines, parse_dates, infer_datetime_format, keep_date_col, date_parser, date_format, dayfirst, cache_dates, iterator, chunksize, compression, thousands, decimal, lineterminator, quotechar, quoting, doublequote, escapechar, comment, encoding, encoding_errors, dialect, on_bad_lines, delim_whitespace, low_memory, memory_map, float_precision, storage_options, dtype_backend) 1024 kwds.update(kwds_defaults) -> 1026 return _read(filepath_or_buffer, kwds) File ~/micromamba/envs/pymc-examples/lib/python3.11/site-packages/pandas/io/parsers/readers.py:620, in _read(filepath_or_buffer, kwds) 619 # Create the parser. --> 620 parser = TextFileReader(filepath_or_buffer, **kwds) 622 if chunksize or iterator: File ~/micromamba/envs/pymc-examples/lib/python3.11/site-packages/pandas/io/parsers/readers.py:1620, in TextFileReader.__init__(self, f, engine, **kwds) 1619 self.handles: IOHandles | None = None -> 1620 self._engine = self._make_engine(f, self.engine) File ~/micromamba/envs/pymc-examples/lib/python3.11/site-packages/pandas/io/parsers/readers.py:1880, in TextFileReader._make_engine(self, f, engine) 1879 mode += "b" -> 1880 self.handles = get_handle( 1881 f, 1882 mode, 1883 encoding=self.options.get("encoding", None), 1884 compression=self.options.get("compression", None), 1885 memory_map=self.options.get("memory_map", False), 1886 is_text=is_text, 1887 errors=self.options.get("encoding_errors", "strict"), 1888 storage_options=self.options.get("storage_options", None), 1889 ) 1890 assert self.handles is not None File ~/micromamba/envs/pymc-examples/lib/python3.11/site-packages/pandas/io/common.py:873, in get_handle(path_or_buf, mode, encoding, compression, memory_map, is_text, errors, storage_options) 871 if ioargs.encoding and "b" not in ioargs.mode: 872 # Encoding --> 873 handle = open( 874 handle, 875 ioargs.mode, 876 encoding=ioargs.encoding, 877 errors=errors, 878 newline="", 879 ) 880 else: 881 # Binary mode FileNotFoundError: [Errno 2] No such file or directory: '../data/body_fat.csv' During handling of the above exception, another exception occurred: HTTPError Traceback (most recent call last) Cell In[4], line 4 2 d = pd.read_csv(os.path.join("..", "data", "body_fat.csv")) 3 except FileNotFoundError: ----> 4 d = pd.read_csv(pm.get_data("body_fat.csv")) 6 d.head() File ~/micromamba/envs/pymc-examples/lib/python3.11/site-packages/pymc/data.py:67, in get_data(filename) 55 def get_data(filename): 56 """Return a BytesIO object for a package data file. 57 58 Parameters (...) 65 BytesIO of the data 66 """ ---> 67 with urllib.request.urlopen(BASE_URL.format(filename=filename)) as handle: 68 content = handle.read() 69 return io.BytesIO(content) File ~/micromamba/envs/pymc-examples/lib/python3.11/urllib/request.py:216, in urlopen(url, data, timeout, cafile, capath, cadefault, context) 214 else: 215 opener = _opener --> 216 return opener.open(url, data, timeout) File ~/micromamba/envs/pymc-examples/lib/python3.11/urllib/request.py:525, in OpenerDirector.open(self, fullurl, data, timeout) 523 for processor in self.process_response.get(protocol, []): 524 meth = getattr(processor, meth_name) --> 525 response = meth(req, response) 527 return response File ~/micromamba/envs/pymc-examples/lib/python3.11/urllib/request.py:634, in HTTPErrorProcessor.http_response(self, request, response) 631 # According to RFC 2616, "2xx" code indicates that the client's 632 # request was successfully received, understood, and accepted. 633 if not (200 <= code < 300): --> 634 response = self.parent.error( 635 'http', request, response, code, msg, hdrs) 637 return response File ~/micromamba/envs/pymc-examples/lib/python3.11/urllib/request.py:563, in OpenerDirector.error(self, proto, *args) 561 if http_err: 562 args = (dict, 'default', 'http_error_default') + orig_args --> 563 return self._call_chain(*args) File ~/micromamba/envs/pymc-examples/lib/python3.11/urllib/request.py:496, in OpenerDirector._call_chain(self, chain, kind, meth_name, *args) 494 for handler in handlers: 495 func = getattr(handler, meth_name) --> 496 result = func(*args) 497 if result is not None: 498 return result File ~/micromamba/envs/pymc-examples/lib/python3.11/urllib/request.py:643, in HTTPDefaultErrorHandler.http_error_default(self, req, fp, code, msg, hdrs) 642 def http_error_default(self, req, fp, code, msg, hdrs): --> 643 raise HTTPError(req.full_url, code, msg, hdrs, fp) HTTPError: HTTP Error 404: Not Found
The text was updated successfully, but these errors were encountered:
cc @aloctavodia who will have the file used which looks like wasn't commited as part of the PR
Sorry, something went wrong.
Could also look back in the pymc commit history to grab
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The
body_fat.csv
frompm.get_data("body_fat.csv")
is not found.The text was updated successfully, but these errors were encountered: