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DESCRIPTION
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DESCRIPTION
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Package: amplicon
Type: Package
Title: Statistics and visualization for amplicon data
Version: 0.1.1
Date: 2019-4-8
Author: Yong-Xin Liu
Maintainer: Yong-Xin Liu <[email protected]>
Description: A basic statistics and plotting pipeline for amplicon data.
1. Alpha boxplot with LSD.test / anova;
2. Alpha rarefraction curve in samples and groups with standard error;
3. PCoA plot with confidence ellipse and Adonis p-value;
4. Constrained PCoA / CCA with variant, p-value and confidence ellipse;
5. Taxonomy stackplot in group and sample.
0.1.1 add beta_cpcoa_dis.R support constrained distance matrix
License: GPL-2
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Roxygen: list(markdown = TRUE)
URL: https://github.com/microbiota http://bailab.genetics.ac.cn http://www.ehbio.com/
MailingList: metagenome <[email protected]>
BugReports: https://github.com/microbiota
Packaged: 2018-12-09 23:59:59 UTC; windows
Depends:
R (>= 3.5.0),
ggplot2
Imports:
ggrepel,
agricolae,
vegan,
dplyr,
reshape2
Suggests:
phyloseq,
microbiome,
metagenomeSeq,
ggpubr,
ggsci,
BiocManager,
Matrix,
knitr,
rmarkdown