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Appearance of the obtained plots #48

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DenisGoryunov opened this issue Dec 21, 2024 · 2 comments
Open

Appearance of the obtained plots #48

DenisGoryunov opened this issue Dec 21, 2024 · 2 comments

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@DenisGoryunov
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Hi,
I got a number of plots, but apperance for the majority of the plots requires some tuning. Can you help me please? Below is a few examples of the plots.

proportion-hets histogram
per-locus-missings boxplot
per-locus-missings histogram
n-missings col
info-dp-chroms boxplot
info-dp density
alternative-allele-frequency-on-each-chromosome violin
number-of-substitutions-of-snps col
number-of-variants-on-each-chromosome col

Regards,
Denis

@pwwang
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pwwang commented Dec 22, 2024

Do you see this example: https://github.com/pwwang/vcfstats#changing-labels-and-ticks ?

You can pass some plotnine statement to tune the plots.

@DenisGoryunov
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Thank you for your response! I'll try to manage it. As i understand, i have to make manual adjustment for each plot i got. I'm wondering if it would be possible in the future to implement some automatic appearance adjustment for all plots based on the samples/variants number in the input VCF to quickly collect statistics on the produced VCF file like e.g. in FastQC or MultiQC tools but on users provided VCF files. Or may be make several presets of graphical parameters to pass in plotline which users could easily vary for plots appearance adjustment without any knowledge of plotline syntax.

Regards,
Denis

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